BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015364
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
           Lattice)
 pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
           Lattice)
          Length = 325

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 260 QVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE 319
           ++ E+E+ +  Y +   EE LA+TR  NS    +        +Q  ++ C+Q V+ + QE
Sbjct: 149 KMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQ-KTQE 207

Query: 320 RGAKPFEFV-RTVPCY 334
           +  K  E V +T P Y
Sbjct: 208 KYEKVLEDVGKTTPQY 223


>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
 pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
          Length = 307

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 260 QVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE 319
           ++ E+E+ +  Y +   EE LA+TR  NS    +        +Q  ++ C+Q V+ + QE
Sbjct: 149 KMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQ-KTQE 207

Query: 320 RGAKPFEFV-RTVPCY 334
           +  K  E V +T P Y
Sbjct: 208 KYEKVLEDVGKTTPQY 223


>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
           Lattice)
 pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
           Lattice)
 pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
           Lattice)
 pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
           Lattice)
          Length = 308

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 260 QVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE 319
           ++ E+E+ +  Y +   EE LA+TR  NS    +        +Q  ++ C+Q V+ + QE
Sbjct: 149 KMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQ-KTQE 207

Query: 320 RGAKPFEFV-RTVPCY 334
           +  K  E V +T P Y
Sbjct: 208 KYEKVLEDVGKTTPQY 223


>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
 pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
 pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
 pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
 pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
 pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
 pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
 pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
 pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
          Length = 337

 Score = 32.0 bits (71), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 260 QVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQE 319
           ++ E+E+ +  Y +   EE LA+TR  NS    +        +   ++ CRQ V+ + QE
Sbjct: 146 KMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQ-KTQE 204

Query: 320 RGAKPFEFV-RTVPCY 334
           +  K  E V +T P Y
Sbjct: 205 KYEKVLEDVGKTTPQY 220


>pdb|3NVL|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
           Trypanosoma Brucei
 pdb|3NVL|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
           Trypanosoma Brucei
          Length = 571

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 247 LALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVF 290
           LA  K LPRRK + V     G GP + +YD   +A T   +++F
Sbjct: 25  LAAHKTLPRRKLVLVVLDGVGIGPRD-EYDAVHVAKTPLMDALF 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,466,889
Number of Sequences: 62578
Number of extensions: 540480
Number of successful extensions: 1063
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 7
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)