BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015366
         (408 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1
          Length = 585

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 328 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 382

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL+ ++   GD  D F EA RR  A++   A RV
Sbjct: 383 VALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVF-EA-RRTEAKKWQNAPRV 434


>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1
          Length = 587

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +     + S+SH +   Q L   +  ++  F
Sbjct: 330 PADYFRILVQQFEVQLQQYRQQIEELENHLAT---QASNSHITP--QDLSMAMQKIYQTF 384

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F EA RR  A++   A RV
Sbjct: 385 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF-EA-RRTEAKKWQNAPRV 436


>sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1
          Length = 361

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167
           +V+SNVH FFVHVAAK ESIHQY+E+M+   L+
Sbjct: 79  RVMSNVHDFFVHVAAKVESIHQYIESMRYGSLS 111


>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1
          Length = 599

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 12/109 (11%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 342 PADYFRILVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 396

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEA 192
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F      ET R EA
Sbjct: 397 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF------ETRRAEA 439


>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus
           GN=Nup98 PE=1 SV=2
          Length = 1816

 Score = 32.3 bits (72), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 230 TSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFA 289
           TSA  S+++ GGL  F    + P     +S F+ PATS   S+ FG G S   S+S    
Sbjct: 39  TSAFGSSNNTGGL--FGNSQTKPGGLFGTSSFSQPATST--STGFGFGTSTGTSNSLFGT 94

Query: 290 AST-LSLFGSTVPSFGSTTSAGASLFSTPFASGIL 323
           A+T  SLF S   +F      G   F T  +SG L
Sbjct: 95  ANTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGL 129


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,079,715
Number of Sequences: 539616
Number of extensions: 5696864
Number of successful extensions: 38635
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 490
Number of HSP's that attempted gapping in prelim test: 30864
Number of HSP's gapped (non-prelim): 5653
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)