Query 015366
Match_columns 408
No_of_seqs 77 out of 79
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0774 Transcription factor P 94.8 0.39 8.5E-06 48.3 11.8 75 94-173 118-193 (334)
2 PF13634 Nucleoporin_FG: Nucle 93.7 0.28 6.1E-06 42.2 7.3 8 292-299 86-93 (113)
3 KOG3091 Nuclear pore complex, 93.4 0.23 5.1E-06 53.0 7.5 19 258-276 36-55 (508)
4 KOG3091 Nuclear pore complex, 93.0 0.32 6.9E-06 52.0 7.8 23 259-281 74-96 (508)
5 PF06013 WXG100: Proteins of 1 92.5 1.8 3.9E-05 32.6 9.2 78 87-168 7-84 (86)
6 PF13634 Nucleoporin_FG: Nucle 92.3 0.72 1.6E-05 39.7 7.6 52 258-317 39-93 (113)
7 PF14644 DUF4456: Domain of un 89.9 2.3 5.1E-05 40.0 9.2 84 86-177 39-124 (208)
8 PF00435 Spectrin: Spectrin re 89.5 7.8 0.00017 29.6 11.1 66 92-168 2-67 (105)
9 PF14644 DUF4456: Domain of un 86.3 5.9 0.00013 37.3 9.4 72 130-207 53-125 (208)
10 smart00150 SPEC Spectrin repea 85.0 15 0.00033 28.0 11.1 66 95-171 2-67 (101)
11 PF03961 DUF342: Protein of un 84.8 7.9 0.00017 40.1 10.3 78 87-168 330-408 (451)
12 PF10392 COG5: Golgi transport 82.8 13 0.00027 32.7 9.4 33 85-117 10-52 (132)
13 PRK04406 hypothetical protein; 82.4 3.6 7.8E-05 33.7 5.4 54 98-160 4-57 (75)
14 KOG1924 RhoA GTPase effector D 82.3 1.1E+02 0.0023 35.8 19.7 29 5-33 364-392 (1102)
15 KOG0811 SNARE protein PEP12/VA 81.6 3.7 8E-05 41.0 6.3 61 99-168 174-234 (269)
16 PF06103 DUF948: Bacterial pro 74.4 30 0.00064 28.1 8.6 64 88-163 16-79 (90)
17 PRK04325 hypothetical protein; 73.4 23 0.0005 28.9 7.6 46 107-161 11-56 (74)
18 PF13256 DUF4047: Domain of un 73.4 38 0.00082 30.9 9.6 72 89-171 25-100 (125)
19 PF12210 Hrs_helical: Hepatocy 73.2 18 0.00039 31.6 7.2 50 97-147 1-51 (96)
20 KOG4571 Activating transcripti 72.9 85 0.0018 32.2 13.0 80 74-173 213-293 (294)
21 PRK04863 mukB cell division pr 72.6 15 0.00033 44.2 8.9 93 78-170 429-534 (1486)
22 PF04156 IncA: IncA protein; 71.8 19 0.00041 32.6 7.5 64 90-155 87-150 (191)
23 PF01544 CorA: CorA-like Mg2+ 69.7 95 0.0021 28.8 11.8 27 88-114 115-141 (292)
24 PF05055 DUF677: Protein of un 69.4 17 0.00038 37.2 7.5 59 5-117 263-321 (336)
25 PF14728 PHTB1_C: PTHB1 C-term 69.3 45 0.00097 34.7 10.5 64 95-163 218-282 (377)
26 PRK10920 putative uroporphyrin 68.9 43 0.00093 35.1 10.3 90 93-193 101-190 (390)
27 PF10458 Val_tRNA-synt_C: Valy 68.4 26 0.00056 27.5 6.7 64 90-162 3-66 (66)
28 PF02181 FH2: Formin Homology 67.9 53 0.0012 32.6 10.3 76 93-177 276-351 (370)
29 PRK13879 conjugal transfer pro 67.5 45 0.00097 33.2 9.6 38 72-117 28-71 (253)
30 PF10168 Nup88: Nuclear pore c 67.3 23 0.0005 39.6 8.4 98 86-185 538-636 (717)
31 PRK00846 hypothetical protein; 65.4 19 0.0004 30.1 5.6 53 101-162 9-61 (77)
32 PRK02793 phi X174 lysis protei 65.3 13 0.00029 30.1 4.6 48 104-160 7-54 (72)
33 TIGR02780 TrbJ_Ti P-type conju 65.3 53 0.0011 31.8 9.5 77 85-170 31-113 (246)
34 PRK13182 racA polar chromosome 64.5 41 0.00089 31.5 8.3 64 91-165 85-148 (175)
35 PF15035 Rootletin: Ciliary ro 64.4 66 0.0014 30.4 9.7 27 90-116 15-41 (182)
36 smart00498 FH2 Formin Homology 63.9 84 0.0018 32.6 11.2 71 95-174 279-349 (432)
37 PF07106 TBPIP: Tat binding pr 63.7 85 0.0018 28.3 10.0 72 92-170 80-159 (169)
38 PF08172 CASP_C: CASP C termin 63.5 1.5E+02 0.0034 29.2 12.4 26 89-114 4-29 (248)
39 cd00176 SPEC Spectrin repeats, 62.8 98 0.0021 26.4 10.9 25 93-117 2-26 (213)
40 PRK02119 hypothetical protein; 62.3 20 0.00044 29.1 5.2 48 104-160 8-55 (73)
41 PRK11546 zraP zinc resistance 62.2 68 0.0015 29.6 9.1 68 87-170 50-117 (143)
42 TIGR02473 flagell_FliJ flagell 62.1 91 0.002 26.4 9.4 38 133-170 66-103 (141)
43 PRK10963 hypothetical protein; 61.8 10 0.00023 35.9 4.0 65 92-165 38-104 (223)
44 PF10805 DUF2730: Protein of u 60.9 52 0.0011 28.2 7.7 65 92-163 36-100 (106)
45 PRK05689 fliJ flagellar biosyn 60.3 1E+02 0.0022 26.9 9.5 40 132-171 68-107 (147)
46 PRK10884 SH3 domain-containing 60.2 1.4E+02 0.003 28.7 11.2 63 90-164 92-154 (206)
47 PRK06975 bifunctional uroporph 57.3 94 0.002 34.3 10.7 52 142-193 424-475 (656)
48 PF04102 SlyX: SlyX; InterPro 57.1 55 0.0012 26.1 6.8 27 134-160 24-50 (69)
49 KOG3647 Predicted coiled-coil 56.7 28 0.00061 35.7 6.1 42 130-171 114-155 (338)
50 PLN03230 acetyl-coenzyme A car 56.3 19 0.00041 38.5 5.1 36 75-114 61-96 (431)
51 PF04156 IncA: IncA protein; 55.2 1E+02 0.0022 27.9 9.0 69 92-169 82-150 (191)
52 PF04375 HemX: HemX; InterPro 55.0 1.4E+02 0.003 30.6 10.9 24 171-194 162-185 (372)
53 PF02561 FliS: Flagellar prote 54.9 1.2E+02 0.0025 26.1 8.9 65 95-170 47-120 (122)
54 PF08700 Vps51: Vps51/Vps67; 54.7 33 0.00072 27.1 5.2 39 132-170 41-79 (87)
55 PRK00295 hypothetical protein; 54.5 31 0.00066 27.7 4.9 47 106-161 6-52 (68)
56 PRK07720 fliJ flagellar biosyn 54.1 1.4E+02 0.0031 26.1 9.5 74 94-170 33-106 (146)
57 PRK09039 hypothetical protein; 54.1 81 0.0017 32.2 9.0 30 88-117 43-72 (343)
58 PF05700 BCAS2: Breast carcino 54.1 1.4E+02 0.0031 28.4 10.2 26 137-162 177-202 (221)
59 PF04912 Dynamitin: Dynamitin 54.0 1.5E+02 0.0033 30.4 11.0 73 98-170 209-282 (388)
60 PRK00736 hypothetical protein; 53.7 70 0.0015 25.7 6.8 46 106-160 6-51 (68)
61 TIGR03017 EpsF chain length de 53.0 2.1E+02 0.0046 29.0 11.8 24 93-116 173-196 (444)
62 KOG4603 TBP-1 interacting prot 52.9 1E+02 0.0022 30.0 8.8 43 75-117 70-112 (201)
63 PF07765 KIP1: KIP1-like prote 52.7 52 0.0011 27.6 6.1 62 84-150 11-72 (74)
64 COG1579 Zn-ribbon protein, pos 52.5 69 0.0015 31.7 8.0 65 90-161 58-122 (239)
65 KOG3366 Mitochondrial F1F0-ATP 52.4 26 0.00056 33.4 4.8 83 75-186 55-137 (172)
66 KOG4302 Microtubule-associated 52.4 51 0.0011 37.0 7.8 43 73-119 100-142 (660)
67 PF00435 Spectrin: Spectrin re 51.6 90 0.0019 23.7 7.0 63 92-159 42-104 (105)
68 PF11172 DUF2959: Protein of u 51.3 2E+02 0.0043 28.2 10.6 49 132-180 61-113 (201)
69 PF07445 priB_priC: Primosomal 51.1 23 0.0005 32.8 4.3 23 93-115 147-169 (173)
70 TIGR03545 conserved hypothetic 50.8 98 0.0021 33.9 9.5 39 97-147 190-228 (555)
71 smart00503 SynN Syntaxin N-ter 50.5 1.4E+02 0.003 24.4 9.2 68 89-165 6-73 (117)
72 PRK14139 heat shock protein Gr 50.4 73 0.0016 30.3 7.5 51 130-180 85-140 (185)
73 PF08614 ATG16: Autophagy prot 50.1 1.2E+02 0.0027 28.0 8.9 34 135-168 144-177 (194)
74 PF04136 Sec34: Sec34-like fam 50.1 1.3E+02 0.0029 27.4 8.9 59 94-168 3-61 (157)
75 PF11559 ADIP: Afadin- and alp 49.9 1.3E+02 0.0029 26.5 8.7 70 93-171 68-137 (151)
76 PF15188 CCDC-167: Coiled-coil 49.8 98 0.0021 26.4 7.4 26 92-117 6-31 (85)
77 PF09537 DUF2383: Domain of un 49.7 24 0.00052 29.2 3.8 55 92-155 32-86 (111)
78 PRK09039 hypothetical protein; 49.5 99 0.0021 31.6 8.8 64 98-170 137-204 (343)
79 COG3923 PriC Primosomal replic 49.5 25 0.00054 33.5 4.2 28 89-116 145-172 (175)
80 COG2900 SlyX Uncharacterized p 49.1 38 0.00082 28.3 4.7 53 102-163 5-57 (72)
81 PRK14147 heat shock protein Gr 49.0 83 0.0018 29.4 7.6 80 89-179 41-125 (172)
82 PF15070 GOLGA2L5: Putative go 48.8 1.1E+02 0.0023 34.1 9.5 94 86-179 348-461 (617)
83 PF12325 TMF_TATA_bd: TATA ele 47.9 2E+02 0.0044 25.6 9.5 74 87-173 19-92 (120)
84 KOG1656 Protein involved in gl 47.7 1.3E+02 0.0028 29.9 8.8 90 94-184 71-162 (221)
85 PF02520 DUF148: Domain of unk 47.5 44 0.00096 28.2 5.1 39 130-168 60-98 (113)
86 PF14942 Muted: Organelle biog 47.1 1.5E+02 0.0033 27.2 8.8 32 132-163 56-87 (145)
87 PF11336 DUF3138: Protein of u 46.9 68 0.0015 34.9 7.4 27 93-119 27-53 (514)
88 TIGR01010 BexC_CtrB_KpsE polys 46.8 3.1E+02 0.0067 27.4 14.3 25 6-30 173-197 (362)
89 KOG0804 Cytoplasmic Zn-finger 46.6 1.5E+02 0.0032 32.4 9.8 69 87-157 335-404 (493)
90 PF06013 WXG100: Proteins of 1 46.1 78 0.0017 23.6 5.8 69 89-161 16-84 (86)
91 PF09849 DUF2076: Uncharacteri 46.1 30 0.00065 34.2 4.4 29 88-116 45-73 (247)
92 PRK14143 heat shock protein Gr 45.8 1E+02 0.0023 30.4 8.0 57 130-187 120-184 (238)
93 TIGR03007 pepcterm_ChnLen poly 45.7 1.9E+02 0.0042 29.9 10.3 23 8-30 166-188 (498)
94 PF07426 Dynactin_p22: Dynacti 45.6 1.4E+02 0.0031 28.0 8.5 75 91-170 87-161 (174)
95 KOG1850 Myosin-like coiled-coi 45.3 3.3E+02 0.0072 28.9 11.7 34 74-111 135-168 (391)
96 PF10152 DUF2360: Predicted co 45.0 32 0.0007 31.1 4.1 33 86-118 9-41 (148)
97 PTZ00446 vacuolar sorting prot 45.0 46 0.001 31.9 5.4 89 94-184 77-166 (191)
98 PRK14900 valS valyl-tRNA synth 44.9 58 0.0013 38.0 7.1 28 89-116 840-867 (1052)
99 PF04102 SlyX: SlyX; InterPro 44.3 96 0.0021 24.7 6.3 30 135-164 18-47 (69)
100 cd09237 V_ScBro1_like Protein- 44.1 69 0.0015 32.3 6.7 11 158-168 311-321 (356)
101 PF06120 Phage_HK97_TLTM: Tail 44.0 2.3E+02 0.0049 29.1 10.3 71 89-170 39-109 (301)
102 PF04124 Dor1: Dor1-like famil 44.0 79 0.0017 31.7 7.1 71 94-169 10-80 (338)
103 KOG2196 Nuclear porin [Nuclear 43.9 2.3E+02 0.005 28.7 10.0 60 44-115 36-95 (254)
104 PF05524 PEP-utilisers_N: PEP- 43.8 88 0.0019 26.5 6.4 28 90-117 34-61 (123)
105 PRK12718 flgL flagellar hook-a 43.7 87 0.0019 34.0 7.7 69 93-170 52-126 (510)
106 PRK10929 putative mechanosensi 43.6 1.8E+02 0.0039 34.6 10.7 61 94-170 176-236 (1109)
107 PF04799 Fzo_mitofusin: fzo-li 43.6 2.1E+02 0.0046 27.3 9.4 62 86-167 108-169 (171)
108 PF02050 FliJ: Flagellar FliJ 43.5 1.6E+02 0.0036 23.2 8.9 25 146-170 63-87 (123)
109 KOG0040 Ca2+-binding actin-bun 43.4 45 0.00096 41.2 5.9 88 79-168 2090-2178(2399)
110 KOG2574 mRNA splicing factor P 43.4 38 0.00083 36.5 5.0 63 129-206 287-350 (492)
111 PF10359 Fmp27_WPPW: RNA pol I 43.3 1.1E+02 0.0023 32.5 8.3 69 95-170 167-235 (475)
112 PRK09841 cryptic autophosphory 43.1 5.1E+02 0.011 28.9 15.8 27 4-30 268-294 (726)
113 PF13097 CENP-U: CENP-A nucleo 43.1 2.4E+02 0.0052 27.1 9.6 55 90-168 107-161 (175)
114 PF12018 DUF3508: Domain of un 42.7 1.9E+02 0.0041 28.6 9.4 80 91-171 9-91 (281)
115 KOG3719 Carnitine O-acyltransf 42.7 20 0.00044 39.5 2.9 49 69-117 11-61 (638)
116 PF10146 zf-C4H2: Zinc finger- 42.7 3.4E+02 0.0074 26.7 12.0 19 93-111 27-45 (230)
117 cd00179 SynN Syntaxin N-termin 42.7 1.8E+02 0.0039 25.0 8.3 31 87-117 2-32 (151)
118 PRK11637 AmiB activator; Provi 42.7 1.6E+02 0.0035 30.3 9.3 40 131-170 92-131 (428)
119 TIGR00383 corA magnesium Mg(2+ 42.6 2.6E+02 0.0057 27.0 10.2 29 88-116 139-167 (318)
120 KOG2991 Splicing regulator [RN 41.8 1.4E+02 0.0031 30.7 8.4 59 94-164 139-199 (330)
121 PRK14155 heat shock protein Gr 41.5 1.3E+02 0.0029 29.0 7.9 82 89-181 36-128 (208)
122 KOG2065 Gamma-tubulin ring com 41.4 1.2E+02 0.0025 33.7 8.2 36 82-117 84-119 (679)
123 PF11932 DUF3450: Protein of u 41.2 2.5E+02 0.0055 26.9 9.8 26 90-115 41-66 (251)
124 PF08913 VBS: Vinculin Binding 40.7 2.7E+02 0.0059 25.0 10.6 81 94-182 3-100 (125)
125 PF14576 SEO_N: Sieve element 40.1 38 0.00082 34.4 4.2 26 89-114 250-275 (286)
126 KOG1301 Vesicle trafficking pr 39.8 1.9E+02 0.0042 32.3 9.5 80 71-158 299-381 (621)
127 TIGR00996 Mtu_fam_mce virulenc 39.7 1E+02 0.0022 29.5 6.9 15 102-116 168-182 (291)
128 TIGR03017 EpsF chain length de 39.7 2.8E+02 0.0062 28.1 10.3 26 5-30 173-198 (444)
129 COG0598 CorA Mg2+ and Co2+ tra 39.6 3.4E+02 0.0074 27.0 10.7 28 90-117 146-173 (322)
130 TIGR01005 eps_transp_fam exopo 38.9 1.6E+02 0.0034 32.5 8.9 26 5-30 196-221 (754)
131 KOG1924 RhoA GTPase effector D 38.9 2.7E+02 0.0058 32.8 10.7 63 93-161 896-958 (1102)
132 TIGR02284 conserved hypothetic 38.5 2.9E+02 0.0062 24.6 11.1 52 92-152 31-82 (139)
133 KOG0250 DNA repair protein RAD 38.4 2.1E+02 0.0046 34.1 10.1 33 5-37 322-354 (1074)
134 KOG2391 Vacuolar sorting prote 38.2 3.8E+02 0.0082 28.5 10.9 84 75-160 191-278 (365)
135 PRK11519 tyrosine kinase; Prov 38.2 1.3E+02 0.0027 33.4 8.1 25 92-116 268-292 (719)
136 PF04508 Pox_A_type_inc: Viral 38.1 33 0.00072 23.1 2.3 21 1-21 3-23 (23)
137 PF07462 MSP1_C: Merozoite sur 37.9 1.3E+02 0.0028 33.5 7.9 24 155-179 220-244 (574)
138 KOG2724 Nuclear pore complex c 37.9 1.2E+02 0.0026 33.0 7.5 19 188-206 174-193 (487)
139 PRK13729 conjugal transfer pil 37.8 56 0.0012 35.4 5.2 8 335-342 288-295 (475)
140 PF10158 LOH1CR12: Tumour supp 36.4 3.3E+02 0.0071 24.7 10.0 33 82-114 22-54 (131)
141 PF08946 Osmo_CC: Osmosensory 36.3 39 0.00084 26.1 2.7 27 88-114 9-35 (46)
142 PRK12717 flgL flagellar hook-a 36.1 1.4E+02 0.0031 32.2 7.9 69 93-170 52-126 (523)
143 COG3416 Uncharacterized protei 36.0 61 0.0013 32.1 4.7 31 88-118 45-75 (233)
144 PF05600 DUF773: Protein of un 35.7 1.4E+02 0.003 32.3 7.7 89 78-171 118-213 (507)
145 KOG0161 Myosin class II heavy 35.5 1.6E+02 0.0035 37.1 9.0 27 2-28 1771-1797(1930)
146 KOG3630 Nuclear pore complex, 35.1 98 0.0021 37.3 6.9 10 311-320 553-562 (1405)
147 TIGR03513 GldL_gliding gliding 35.0 1.6E+02 0.0035 28.8 7.3 32 70-113 121-152 (202)
148 PRK00888 ftsB cell division pr 34.9 1.2E+02 0.0025 26.2 5.8 38 133-170 32-71 (105)
149 KOG4484 Uncharacterized conser 34.8 2.9E+02 0.0062 26.9 8.8 57 100-170 26-82 (199)
150 PF12273 RCR: Chitin synthesis 34.7 22 0.00047 31.0 1.4 15 350-364 1-15 (130)
151 PF10168 Nup88: Nuclear pore c 34.6 3.3E+02 0.0072 30.9 10.7 15 89-103 556-570 (717)
152 PF05335 DUF745: Protein of un 34.5 2.1E+02 0.0046 27.4 8.0 27 90-116 66-92 (188)
153 KOG0994 Extracellular matrix g 34.5 2E+02 0.0043 35.1 9.1 13 93-105 1203-1215(1758)
154 PRK05724 acetyl-CoA carboxylas 34.5 88 0.0019 32.2 5.8 22 93-114 5-26 (319)
155 PRK10929 putative mechanosensi 34.4 3.1E+02 0.0067 32.8 10.7 72 88-160 55-134 (1109)
156 TIGR02231 conserved hypothetic 34.4 4E+02 0.0086 28.3 10.7 41 130-170 126-166 (525)
157 PRK10807 paraquat-inducible pr 34.4 1.2E+02 0.0026 33.0 7.1 58 89-146 434-491 (547)
158 PRK10636 putative ABC transpor 34.3 1.8E+02 0.0039 31.8 8.4 25 91-115 563-587 (638)
159 COG0497 RecN ATPase involved i 34.3 4.3E+02 0.0094 29.4 11.2 42 130-171 320-364 (557)
160 PF04380 BMFP: Membrane fusoge 34.2 2.6E+02 0.0057 22.9 8.8 74 83-161 2-76 (79)
161 PF10234 Cluap1: Clusterin-ass 34.1 1.7E+02 0.0037 29.5 7.6 62 106-179 159-223 (267)
162 PF05266 DUF724: Protein of un 33.6 2.2E+02 0.0048 27.1 7.9 30 137-166 154-183 (190)
163 COG2959 HemX Uncharacterized e 33.6 3.4E+02 0.0073 29.1 9.9 58 136-193 131-188 (391)
164 PRK04325 hypothetical protein; 33.5 82 0.0018 25.7 4.4 22 93-114 11-32 (74)
165 TIGR01010 BexC_CtrB_KpsE polys 33.5 1.9E+02 0.0042 28.8 8.0 24 93-116 172-195 (362)
166 PF14723 SSFA2_C: Sperm-specif 33.2 2E+02 0.0043 27.8 7.5 29 87-115 98-129 (179)
167 PF11887 DUF3407: Protein of u 33.2 1.4E+02 0.0029 29.4 6.7 58 91-157 42-99 (267)
168 TIGR00513 accA acetyl-CoA carb 33.0 59 0.0013 33.3 4.3 21 94-114 6-26 (316)
169 PRK14161 heat shock protein Gr 32.8 2.1E+02 0.0045 27.1 7.5 18 150-167 27-44 (178)
170 PF10147 CR6_interact: Growth 32.7 5E+02 0.011 25.7 10.8 52 131-182 124-183 (217)
171 PF10475 DUF2450: Protein of u 32.6 3.4E+02 0.0074 26.6 9.3 59 94-171 31-89 (291)
172 PLN03181 glycosyltransferase; 32.4 48 0.001 35.7 3.6 50 86-168 325-374 (453)
173 PF03993 DUF349: Domain of Unk 32.3 1.9E+02 0.004 22.3 6.1 30 86-115 19-48 (77)
174 PF13874 Nup54: Nucleoporin co 32.3 1.6E+02 0.0035 26.2 6.5 65 93-170 29-93 (141)
175 TIGR00293 prefoldin, archaeal 32.3 3.2E+02 0.0069 23.3 10.8 84 87-170 9-121 (126)
176 COG1283 NptA Na+/phosphate sym 32.0 1.8E+02 0.0038 32.2 7.8 28 86-114 355-382 (533)
177 PF07200 Mod_r: Modifier of ru 31.9 50 0.0011 29.0 3.2 39 141-179 54-92 (150)
178 cd00446 GrpE GrpE is the adeni 31.9 2.8E+02 0.0061 24.3 7.8 82 89-181 8-96 (137)
179 PF12041 DELLA: Transcriptiona 31.9 68 0.0015 26.9 3.7 43 99-141 15-61 (73)
180 PF05377 FlaC_arch: Flagella a 31.9 1.9E+02 0.0042 23.0 6.0 30 136-165 15-44 (55)
181 PF09731 Mitofilin: Mitochondr 31.7 3E+02 0.0065 29.4 9.4 16 136-151 252-267 (582)
182 PF08650 DASH_Dad4: DASH compl 31.6 2.2E+02 0.0048 23.8 6.6 49 131-179 14-72 (72)
183 PF08385 DHC_N1: Dynein heavy 31.6 2.3E+02 0.0049 29.5 8.3 75 94-170 294-378 (579)
184 PF10186 Atg14: UV radiation r 31.5 3.3E+02 0.0071 25.6 8.7 23 93-115 65-87 (302)
185 PRK08027 flgL flagellar hook-a 31.5 2.1E+02 0.0045 28.7 7.7 77 94-179 53-136 (317)
186 PF07426 Dynactin_p22: Dynacti 31.5 2.1E+02 0.0046 26.8 7.4 59 98-161 5-66 (174)
187 PF07889 DUF1664: Protein of u 31.4 1.5E+02 0.0033 26.8 6.2 67 90-168 42-108 (126)
188 cd00176 SPEC Spectrin repeats, 31.2 3.3E+02 0.0072 23.2 9.5 70 89-163 38-107 (213)
189 KOG0810 SNARE protein Syntaxin 31.1 1.5E+02 0.0033 30.1 6.8 75 93-170 35-110 (297)
190 TIGR00012 L29 ribosomal protei 31.0 82 0.0018 24.1 3.8 29 151-179 7-37 (55)
191 PRK14150 heat shock protein Gr 31.0 2.6E+02 0.0056 26.7 7.9 81 88-179 60-148 (193)
192 PRK00295 hypothetical protein; 30.9 98 0.0021 24.8 4.4 22 93-114 7-28 (68)
193 PRK05729 valS valyl-tRNA synth 30.9 2E+02 0.0042 32.8 8.3 65 89-162 809-873 (874)
194 PRK14145 heat shock protein Gr 30.9 2.4E+02 0.0052 27.3 7.7 49 130-179 98-151 (196)
195 PF12841 YvrJ: YvrJ protein fa 30.7 74 0.0016 23.4 3.3 22 92-113 16-37 (38)
196 PLN03229 acetyl-coenzyme A car 30.6 61 0.0013 37.0 4.3 36 75-114 82-117 (762)
197 KOG2689 Predicted ubiquitin re 30.6 6.3E+02 0.014 26.2 11.1 53 131-193 127-179 (290)
198 PF14712 Snapin_Pallidin: Snap 30.6 2.9E+02 0.0063 22.3 8.1 24 141-164 63-86 (92)
199 COG2882 FliJ Flagellar biosynt 30.5 3E+02 0.0065 25.6 8.0 41 131-171 67-107 (148)
200 PRK11637 AmiB activator; Provi 30.4 5.1E+02 0.011 26.7 10.6 20 95-114 44-63 (428)
201 TIGR02550 flagell_flgL flagell 30.3 2.2E+02 0.0047 27.4 7.5 77 94-179 52-135 (306)
202 KOG0517 Beta-spectrin [Cytoske 30.2 2.6E+02 0.0057 35.7 9.4 93 98-194 1382-1484(2473)
203 PRK14154 heat shock protein Gr 30.2 2.8E+02 0.0061 27.0 8.2 51 130-180 105-164 (208)
204 PRK14158 heat shock protein Gr 30.2 5.1E+02 0.011 25.0 10.2 42 130-171 35-76 (194)
205 PF15070 GOLGA2L5: Putative go 30.1 3E+02 0.0065 30.7 9.3 91 90-182 413-517 (617)
206 cd07686 F-BAR_Fer The F-BAR (F 30.1 3.1E+02 0.0068 27.0 8.5 75 87-170 65-141 (234)
207 PF09125 COX2-transmemb: Cytoc 30.0 25 0.00054 26.2 0.8 22 347-368 12-33 (38)
208 PRK08870 flgL flagellar hook-a 30.0 2.4E+02 0.0052 28.9 8.0 69 93-170 52-126 (404)
209 TIGR02338 gimC_beta prefoldin, 30.0 99 0.0021 26.3 4.6 28 87-114 77-104 (110)
210 PF01496 V_ATPase_I: V-type AT 29.9 3.2E+02 0.0069 30.5 9.5 26 146-171 258-283 (759)
211 TIGR00383 corA magnesium Mg(2+ 29.8 3.3E+02 0.0072 26.4 8.7 15 101-115 145-159 (318)
212 TIGR00208 fliS flagellar biosy 29.7 3.9E+02 0.0084 23.5 9.5 38 132-169 75-121 (124)
213 PRK04406 hypothetical protein; 29.7 1E+02 0.0022 25.3 4.4 24 90-113 24-47 (75)
214 PRK14549 50S ribosomal protein 29.5 1.3E+02 0.0029 24.2 5.0 30 150-179 13-45 (69)
215 PF02601 Exonuc_VII_L: Exonucl 29.5 5.5E+02 0.012 25.2 10.3 32 86-117 153-184 (319)
216 PRK10325 heat shock protein Gr 29.5 2.6E+02 0.0057 26.7 7.7 81 89-180 62-150 (197)
217 PF10018 Med4: Vitamin-D-recep 29.4 2.2E+02 0.0047 26.5 7.0 62 91-162 2-63 (188)
218 PF05546 She9_MDM33: She9 / Md 29.4 5E+02 0.011 25.6 9.6 64 91-168 2-65 (207)
219 PRK00736 hypothetical protein; 29.3 1.1E+02 0.0024 24.6 4.4 27 88-114 16-42 (68)
220 PRK14160 heat shock protein Gr 29.3 2.8E+02 0.006 27.1 7.9 42 130-171 56-97 (211)
221 PRK14151 heat shock protein Gr 29.2 2.8E+02 0.0061 26.1 7.7 50 130-179 73-130 (176)
222 PF13801 Metal_resist: Heavy-m 29.1 2.8E+02 0.006 22.0 6.8 48 138-190 48-95 (125)
223 PRK09546 zntB zinc transporter 29.1 4.4E+02 0.0095 26.0 9.5 27 89-115 148-174 (324)
224 TIGR03185 DNA_S_dndD DNA sulfu 29.1 3.4E+02 0.0074 29.7 9.5 35 130-164 423-457 (650)
225 PRK00409 recombination and DNA 29.1 3.2E+02 0.0069 31.1 9.4 10 72-81 475-484 (782)
226 PRK02793 phi X174 lysis protei 29.1 1.1E+02 0.0024 24.9 4.4 27 88-114 19-45 (72)
227 TIGR00634 recN DNA repair prot 29.0 2.1E+02 0.0046 30.7 7.8 41 130-170 324-367 (563)
228 PRK05771 V-type ATP synthase s 28.7 4E+02 0.0086 29.1 9.9 23 93-115 45-67 (646)
229 KOG4427 E3 ubiquitin protein l 28.5 5.3E+02 0.012 30.4 10.9 72 88-171 35-106 (1096)
230 TIGR02977 phageshock_pspA phag 28.5 4E+02 0.0086 25.3 8.7 21 94-114 55-75 (219)
231 PF14235 DUF4337: Domain of un 28.5 85 0.0018 29.0 4.2 30 86-115 68-97 (157)
232 PF11207 DUF2989: Protein of u 28.4 1.2E+02 0.0025 29.6 5.2 62 99-175 60-123 (203)
233 PF04568 IATP: Mitochondrial A 28.3 1E+02 0.0022 26.9 4.4 26 89-114 74-99 (100)
234 PLN02943 aminoacyl-tRNA ligase 27.9 3E+02 0.0065 32.0 9.1 65 89-162 887-951 (958)
235 PLN02718 Probable galacturonos 27.8 3E+02 0.0064 31.0 8.7 40 100-145 193-232 (603)
236 PF03938 OmpH: Outer membrane 27.8 2.9E+02 0.0064 24.0 7.3 29 86-114 31-59 (158)
237 COG5384 Mpp10 U3 small nucleol 27.7 55 0.0012 35.4 3.2 22 93-114 274-295 (569)
238 PRK09546 zntB zinc transporter 27.6 2.8E+02 0.0061 27.4 7.9 14 101-114 153-166 (324)
239 PRK12804 flagellin; Provisiona 27.6 2.8E+02 0.0061 27.4 7.9 81 93-179 49-137 (301)
240 PF07061 Swi5: Swi5; InterPro 27.5 1.5E+02 0.0033 24.8 5.1 46 94-143 3-48 (83)
241 PF03792 PBC: PBC domain; Int 27.2 3.2E+02 0.0068 26.7 7.8 61 101-166 129-190 (191)
242 COG1340 Uncharacterized archae 27.2 3.8E+02 0.0083 27.6 8.8 42 130-171 202-243 (294)
243 TIGR02338 gimC_beta prefoldin, 27.2 3.9E+02 0.0085 22.7 9.6 42 129-170 61-102 (110)
244 PF11568 Med29: Mediator compl 27.1 3.1E+02 0.0068 25.6 7.5 66 2-115 8-73 (148)
245 PRK14141 heat shock protein Gr 27.0 3.1E+02 0.0067 26.7 7.8 51 130-180 84-147 (209)
246 PF09789 DUF2353: Uncharacteri 26.8 5.1E+02 0.011 26.9 9.7 71 92-164 31-101 (319)
247 TIGR00606 rad50 rad50. This fa 26.6 2.8E+02 0.0061 33.0 8.8 70 92-168 793-862 (1311)
248 PHA02562 46 endonuclease subun 26.6 4.8E+02 0.01 27.2 9.7 35 137-171 215-249 (562)
249 TIGR03007 pepcterm_ChnLen poly 26.5 3.6E+02 0.0077 28.0 8.7 26 91-116 161-186 (498)
250 KOG1760 Molecular chaperone Pr 26.4 1.4E+02 0.003 27.5 5.0 24 91-114 30-53 (131)
251 PHA03185 UL14 tegument protein 26.4 6.5E+02 0.014 25.0 13.2 90 98-200 65-163 (214)
252 cd09238 V_Alix_like_1 Protein- 26.4 2.6E+02 0.0057 28.2 7.6 24 89-112 197-220 (339)
253 COG1422 Predicted membrane pro 26.4 3.9E+02 0.0084 26.3 8.3 53 90-166 71-123 (201)
254 TIGR01834 PHA_synth_III_E poly 26.4 4.6E+02 0.01 27.3 9.3 33 86-118 251-284 (320)
255 PRK10803 tol-pal system protei 26.4 2.2E+02 0.0048 27.9 6.8 41 131-171 57-101 (263)
256 COG2433 Uncharacterized conser 26.3 3.5E+02 0.0075 30.7 8.9 21 94-114 418-438 (652)
257 COG5293 Predicted ATPase [Gene 26.2 1.9E+02 0.0041 32.0 6.7 93 74-171 325-428 (591)
258 KOG2189 Vacuolar H+-ATPase V0 26.1 5.5E+02 0.012 30.1 10.5 40 131-170 88-127 (829)
259 PRK14163 heat shock protein Gr 26.1 2.8E+02 0.0061 27.2 7.4 33 139-171 44-76 (214)
260 cd02683 MIT_1 MIT: domain cont 26.0 3.6E+02 0.0079 21.9 8.1 26 92-117 18-43 (77)
261 PF02646 RmuC: RmuC family; I 26.0 2.1E+02 0.0045 28.6 6.6 27 89-115 4-30 (304)
262 PRK14162 heat shock protein Gr 25.8 3.3E+02 0.0072 26.2 7.7 79 90-179 63-148 (194)
263 PRK10093 primosomal replicatio 25.7 1E+02 0.0022 29.3 4.2 27 89-115 141-167 (171)
264 PF04129 Vps52: Vps52 / Sac2 f 25.5 7.1E+02 0.015 26.8 10.9 83 91-182 14-104 (508)
265 PRK14143 heat shock protein Gr 25.5 3.7E+02 0.0079 26.6 8.1 42 130-171 62-103 (238)
266 PF11593 Med3: Mediator comple 25.5 8.6E+02 0.019 26.1 13.8 30 141-170 64-93 (379)
267 CHL00198 accA acetyl-CoA carbo 25.5 3.3E+02 0.0071 28.3 8.1 20 95-114 10-29 (322)
268 PTZ00464 SNF-7-like protein; P 25.5 1.2E+02 0.0026 29.3 4.8 92 93-186 70-164 (211)
269 PRK06663 flagellar hook-associ 25.5 2.7E+02 0.0059 28.9 7.6 69 93-170 53-127 (419)
270 PF14282 FlxA: FlxA-like prote 25.4 4.3E+02 0.0094 22.6 7.8 55 97-156 18-72 (106)
271 PF07851 TMPIT: TMPIT-like pro 25.4 4.5E+02 0.0097 27.4 9.0 27 91-117 11-37 (330)
272 KOG4807 F-actin binding protei 25.4 4.1E+02 0.0088 29.1 8.9 85 87-171 294-400 (593)
273 PF04012 PspA_IM30: PspA/IM30 25.3 4.7E+02 0.01 24.3 8.5 73 94-171 54-127 (221)
274 PF05008 V-SNARE: Vesicle tran 25.2 3.4E+02 0.0073 21.3 7.9 26 90-115 24-49 (79)
275 PRK14158 heat shock protein Gr 25.2 3E+02 0.0066 26.4 7.3 56 130-186 93-155 (194)
276 PF06103 DUF948: Bacterial pro 25.2 3.7E+02 0.008 21.7 7.1 55 90-149 25-79 (90)
277 PRK12803 flagellin; Provisiona 25.1 3E+02 0.0065 28.3 7.7 76 96-180 55-137 (335)
278 PF13747 DUF4164: Domain of un 25.1 3.1E+02 0.0067 23.1 6.6 66 94-165 4-69 (89)
279 cd07657 F-BAR_Fes_Fer The F-BA 25.0 4.2E+02 0.0091 25.8 8.4 74 89-170 67-140 (237)
280 PF03276 Gag_spuma: Spumavirus 24.9 1E+03 0.022 26.9 11.9 18 336-353 315-332 (582)
281 PRK10697 DNA-binding transcrip 24.8 1.2E+02 0.0026 27.2 4.2 28 90-117 80-107 (118)
282 PRK14161 heat shock protein Gr 24.8 3.6E+02 0.0079 25.5 7.7 80 90-180 43-132 (178)
283 cd09234 V_HD-PTP_like Protein- 24.8 3.5E+02 0.0076 27.2 8.1 27 89-115 193-219 (337)
284 PRK10698 phage shock protein P 24.7 5E+02 0.011 25.0 8.7 72 93-165 54-136 (222)
285 PRK14153 heat shock protein Gr 24.6 3.4E+02 0.0074 26.1 7.6 81 89-180 56-143 (194)
286 PRK02119 hypothetical protein; 24.6 1.5E+02 0.0032 24.2 4.4 22 93-114 11-32 (73)
287 cd00890 Prefoldin Prefoldin is 24.6 4.2E+02 0.009 22.1 9.9 41 130-170 82-122 (129)
288 PF12925 APP_E2: E2 domain of 24.5 1E+02 0.0022 29.8 4.1 68 5-110 32-100 (193)
289 PF10186 Atg14: UV radiation r 24.5 5.3E+02 0.011 24.3 8.8 23 5-27 26-48 (302)
290 KOG4719 Nuclear pore complex p 24.4 1.8E+02 0.004 34.3 6.6 71 226-302 938-1012(1053)
291 PF06696 Strep_SA_rep: Strepto 24.4 1.7E+02 0.0038 20.0 4.0 22 90-111 4-25 (25)
292 PRK11519 tyrosine kinase; Prov 24.3 1E+03 0.022 26.5 13.0 26 5-30 269-294 (719)
293 COG5391 Phox homology (PX) dom 24.3 1.4E+02 0.0031 32.6 5.5 73 85-161 448-520 (524)
294 PF01453 B_lectin: D-mannose b 24.2 44 0.00096 28.5 1.4 24 330-353 54-78 (114)
295 TIGR02231 conserved hypothetic 24.0 5.9E+02 0.013 27.0 9.9 28 137-164 126-153 (525)
296 TIGR01843 type_I_hlyD type I s 24.0 6.7E+02 0.015 24.7 9.7 10 346-355 400-409 (423)
297 PF08385 DHC_N1: Dynein heavy 23.9 8.3E+02 0.018 25.4 11.2 22 87-108 353-374 (579)
298 COG3685 Uncharacterized protei 23.9 1.4E+02 0.0031 28.5 4.8 29 90-118 38-66 (167)
299 PF09712 PHA_synth_III_E: Poly 23.8 2.9E+02 0.0062 27.8 7.2 21 149-169 272-292 (293)
300 PF12325 TMF_TATA_bd: TATA ele 23.7 2.8E+02 0.0061 24.7 6.4 32 137-168 80-115 (120)
301 PF14772 NYD-SP28: Sperm tail 23.7 4.4E+02 0.0095 22.1 8.5 43 129-171 52-98 (104)
302 PF04740 LXG: LXG domain of WX 23.6 4.7E+02 0.01 23.7 8.0 71 74-151 51-122 (204)
303 PRK14160 heat shock protein Gr 23.6 3.3E+02 0.0071 26.6 7.3 76 92-179 87-166 (211)
304 PF15397 DUF4618: Domain of un 23.5 2.9E+02 0.0062 27.9 7.0 68 89-168 72-139 (258)
305 PRK09841 cryptic autophosphory 23.4 2.8E+02 0.006 30.9 7.7 26 92-117 268-293 (726)
306 KOG3540 Beta amyloid precursor 23.4 2.5E+02 0.0054 31.3 7.0 34 86-119 291-326 (615)
307 smart00076 IFabd Interferon al 23.4 2.5E+02 0.0053 24.8 5.9 47 91-147 46-92 (117)
308 cd09236 V_AnPalA_UmRIM20_like 23.3 3.9E+02 0.0084 27.2 8.1 20 96-115 256-275 (353)
309 COG4942 Membrane-bound metallo 23.3 7.6E+02 0.017 26.7 10.5 31 305-335 335-366 (420)
310 TIGR01837 PHA_granule_1 poly(h 23.1 4.1E+02 0.0089 23.2 7.2 26 86-111 25-50 (118)
311 PRK14148 heat shock protein Gr 23.0 3.9E+02 0.0085 25.7 7.6 74 89-173 63-138 (195)
312 PLN02829 Probable galacturonos 23.0 4.1E+02 0.0089 30.2 8.7 43 97-145 208-250 (639)
313 PF00429 TLV_coat: ENV polypro 22.9 2E+02 0.0043 31.5 6.3 32 86-117 423-454 (561)
314 PF11157 DUF2937: Protein of u 22.9 4.9E+02 0.011 24.2 8.1 68 94-169 30-98 (167)
315 PRK12802 flagellin; Provisiona 22.8 4E+02 0.0087 26.0 7.9 83 92-180 50-139 (282)
316 cd07655 F-BAR_PACSIN The F-BAR 22.8 6E+02 0.013 24.7 9.0 27 146-172 211-238 (258)
317 PF05667 DUF812: Protein of un 22.6 3.6E+02 0.0079 30.0 8.3 38 134-171 393-430 (594)
318 smart00150 SPEC Spectrin repea 22.6 3.4E+02 0.0074 20.4 6.7 21 93-113 40-60 (101)
319 PTZ00419 valyl-tRNA synthetase 22.5 4.4E+02 0.0096 30.6 9.2 65 89-162 927-991 (995)
320 PF14523 Syntaxin_2: Syntaxin- 22.5 4.2E+02 0.0091 21.4 7.8 54 98-161 3-56 (102)
321 PF09177 Syntaxin-6_N: Syntaxi 22.5 2.6E+02 0.0056 23.2 5.6 32 86-117 34-65 (97)
322 PRK14163 heat shock protein Gr 22.4 3.9E+02 0.0085 26.2 7.6 28 153-180 111-143 (214)
323 PF10392 COG5: Golgi transport 22.3 5.3E+02 0.012 22.6 9.1 77 93-169 35-113 (132)
324 PRK14140 heat shock protein Gr 22.3 2.9E+02 0.0063 26.5 6.6 25 147-171 49-73 (191)
325 PRK14692 lagellar hook-associa 22.3 2.9E+02 0.0063 31.7 7.6 69 93-170 52-126 (749)
326 KOG0994 Extracellular matrix g 22.3 6.9E+02 0.015 31.0 10.6 23 93-115 1463-1485(1758)
327 PRK14145 heat shock protein Gr 22.3 4.5E+02 0.0097 25.4 7.9 38 134-171 44-81 (196)
328 PF14643 DUF4455: Domain of un 22.2 4.4E+02 0.0096 27.9 8.6 78 86-171 67-149 (473)
329 PF13166 AAA_13: AAA domain 22.2 8.6E+02 0.019 26.4 10.8 29 88-116 319-347 (712)
330 PF04340 DUF484: Protein of un 22.1 1.2E+02 0.0027 28.4 4.1 54 84-147 34-87 (225)
331 PRK11085 magnesium/nickel/coba 22.1 5.1E+02 0.011 26.4 8.6 61 89-170 137-197 (316)
332 cd07597 BAR_SNX8 The Bin/Amphi 22.1 7.3E+02 0.016 24.0 12.8 63 90-152 42-108 (246)
333 KOG0811 SNARE protein PEP12/VA 22.0 6.3E+02 0.014 25.6 9.1 66 89-161 19-84 (269)
334 cd07909 YciF YciF bacterial st 21.8 3.1E+02 0.0067 25.1 6.4 29 91-119 33-61 (147)
335 COG5283 Phage-related tail pro 21.8 5E+02 0.011 31.6 9.4 37 1-37 66-102 (1213)
336 PF00210 Ferritin: Ferritin-li 21.4 4.5E+02 0.0098 21.4 8.0 80 88-167 29-115 (142)
337 PF05974 DUF892: Domain of unk 21.4 4.3E+02 0.0094 23.9 7.3 29 91-119 35-63 (159)
338 PRK14156 heat shock protein Gr 21.4 3.6E+02 0.0079 25.6 7.0 78 89-179 50-131 (177)
339 PF05075 DUF684: Protein of un 21.4 3.2E+02 0.0069 27.8 7.1 83 98-193 2-112 (345)
340 PF02050 FliJ: Flagellar FliJ 21.3 4.2E+02 0.009 20.9 8.7 38 134-171 44-81 (123)
341 PRK14149 heat shock protein Gr 21.3 4E+02 0.0086 25.7 7.3 81 89-180 59-145 (191)
342 TIGR02978 phageshock_pspC phag 21.2 1.5E+02 0.0033 26.5 4.2 28 90-117 83-110 (121)
343 cd00427 Ribosomal_L29_HIP Ribo 21.1 1.6E+02 0.0035 22.6 3.9 29 151-179 8-38 (57)
344 PF12423 KIF1B: Kinesin protei 21.0 60 0.0013 24.0 1.4 28 155-182 2-36 (45)
345 PF07996 T4SS: Type IV secreti 21.0 1.2E+02 0.0025 27.6 3.5 30 90-119 18-47 (195)
346 CHL00154 rpl29 ribosomal prote 20.9 1.5E+02 0.0033 24.0 3.8 29 151-179 14-44 (67)
347 KOG4848 Extracellular matrix-a 20.9 8.4E+02 0.018 24.3 11.0 53 130-182 134-194 (225)
348 TIGR02976 phageshock_pspB phag 20.9 1.8E+02 0.0039 24.2 4.3 28 90-117 41-68 (75)
349 PF00261 Tropomyosin: Tropomyo 20.9 7.4E+02 0.016 23.7 9.6 63 90-168 126-188 (237)
350 PRK10869 recombination and rep 20.8 4.7E+02 0.01 28.4 8.6 29 143-171 335-363 (553)
351 cd07680 F-BAR_PACSIN1 The F-BA 20.8 8.4E+02 0.018 24.3 10.5 68 93-172 170-238 (258)
352 PF06705 SF-assemblin: SF-asse 20.7 1.7E+02 0.0037 28.0 4.8 33 136-168 86-118 (247)
353 PF08336 P4Ha_N: Prolyl 4-Hydr 20.7 3.5E+02 0.0075 23.6 6.3 34 135-168 15-48 (134)
354 PF00831 Ribosomal_L29: Riboso 20.7 1.7E+02 0.0037 22.6 3.9 29 151-179 9-39 (58)
355 PRK11147 ABC transporter ATPas 20.7 4.9E+02 0.011 28.3 8.7 26 89-115 567-592 (635)
356 PRK00846 hypothetical protein; 20.6 5.2E+02 0.011 21.7 7.3 6 105-110 27-32 (77)
357 PRK14154 heat shock protein Gr 20.5 4E+02 0.0086 26.0 7.2 26 146-171 63-88 (208)
358 PRK11085 magnesium/nickel/coba 20.4 7.8E+02 0.017 25.0 9.6 74 91-170 176-249 (316)
359 PRK05689 fliJ flagellar biosyn 20.4 4.8E+02 0.01 22.7 7.1 28 130-157 73-100 (147)
360 KOG1853 LIS1-interacting prote 20.3 9.8E+02 0.021 24.9 11.9 147 89-269 89-245 (333)
361 PRK06975 bifunctional uroporph 20.3 5.5E+02 0.012 28.6 9.1 37 132-168 368-404 (656)
362 TIGR01843 type_I_hlyD type I s 20.3 8.1E+02 0.018 24.1 9.5 22 146-167 207-228 (423)
363 PRK00306 50S ribosomal protein 20.2 1.7E+02 0.0036 23.1 3.9 29 151-179 11-41 (66)
364 PRK14151 heat shock protein Gr 20.1 3.9E+02 0.0084 25.2 6.9 28 144-171 29-56 (176)
365 cd07598 BAR_FAM92 The Bin/Amph 20.1 6.7E+02 0.015 24.1 8.6 80 87-170 7-100 (211)
366 PF12795 MscS_porin: Mechanose 20.0 7.6E+02 0.017 23.5 11.2 49 136-184 100-152 (240)
No 1
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=94.85 E-value=0.39 Score=48.34 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE-SIHQYVETMKTAYLADQRRR 172 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla-~LHE~Ve~lKE~YL~~rRr~ 172 (408)
+..|++=+.|+.+.+-++.+|+-.+. -.++. ++++...+..+|.-|.++.-+|. +.-|+|=.+|..||..||++
T Consensus 118 ~ElekyeqaCneftthV~nlL~eQsr--~RPi~---~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRKR 192 (334)
T KOG0774|consen 118 NELEKYEQACNEFTTHVMNLLREQSR--TRPIM---PKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRKR 192 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555556778888899999987654 34454 99999999999999999966663 45567889999999999954
Q ss_pred C
Q 015366 173 G 173 (408)
Q Consensus 173 G 173 (408)
.
T Consensus 193 R 193 (334)
T KOG0774|consen 193 R 193 (334)
T ss_pred c
Confidence 3
No 2
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=93.74 E-value=0.28 Score=42.24 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=4.2
Q ss_pred ccCCCCCC
Q 015366 292 TLSLFGST 299 (408)
Q Consensus 292 t~~~FGs~ 299 (408)
..++||..
T Consensus 86 ~~~lFG~~ 93 (113)
T PF13634_consen 86 SGGLFGQS 93 (113)
T ss_pred CCcccCCC
Confidence 44556653
No 3
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=0.23 Score=52.99 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=10.4
Q ss_pred ccccc-cCCCCCCCCCCCCC
Q 015366 258 SSLFA-TPATSASPSSLFGS 276 (408)
Q Consensus 258 ~slF~-tp~t~~~~~~lfgs 276 (408)
+++|| +|+|.+.++.+||.
T Consensus 36 g~~fgs~p~~~taTt~~fG~ 55 (508)
T KOG3091|consen 36 GGAFGSQPTTGTATTGLFGA 55 (508)
T ss_pred ccccccCCCCCCcccccccc
Confidence 35555 44555556666663
No 4
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=0.32 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=16.6
Q ss_pred cccccCCCCCCCCCCCCCCCCCC
Q 015366 259 SLFATPATSASPSSLFGSGVSPQ 281 (408)
Q Consensus 259 slF~tp~t~~~~~~lfgs~~s~~ 281 (408)
+.||+-.+++..+.+||+...-+
T Consensus 74 s~~~~s~~t~~g~g~fgs~~g~~ 96 (508)
T KOG3091|consen 74 SGFGTSTATGAGGGFFGSQSGQQ 96 (508)
T ss_pred cccccCCccCCccCcccccccee
Confidence 57888778888888888754433
No 5
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=92.46 E-value=1.8 Score=32.58 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL 166 (408)
+=+.+++..++.....++..+++|+..+....+. =.+ .+-+.....+.++++.|-.+...|..+.+.+...++.|.
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~-W~G---~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~ 82 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQAS-WQG---EAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-BTS---STSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888655321 112 235677888999999999999999999999999999987
Q ss_pred HH
Q 015366 167 AD 168 (408)
Q Consensus 167 ~~ 168 (408)
+.
T Consensus 83 ~~ 84 (86)
T PF06013_consen 83 QA 84 (86)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 6
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=92.25 E-value=0.72 Score=39.74 Aligned_cols=52 Identities=33% Similarity=0.487 Sum_probs=27.0
Q ss_pred ccccccCCC---CCCCCCCCCCCCCCCCCCCcccCCcccCCCCCCCCCCCCCCCCCcccccCC
Q 015366 258 SSLFATPAT---SASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTP 317 (408)
Q Consensus 258 ~slF~tp~t---~~~~~~lfgs~~s~~~stp~~g~~st~~~FGs~tpsf~st~~~g~slFstp 317 (408)
.+|||...+ ...+++|||..... --.+++.++||.....=. ...+++||..+
T Consensus 39 ~~LFG~~~~~~~~~~~~~LFG~~~~~------~~~~~~~~lFG~~~~~~~--~~~~~~lFG~~ 93 (113)
T PF13634_consen 39 GSLFGSTSTQTQATTTGGLFGSSNNT------QQQPSSGSLFGSTTATQQ--ATPSGGLFGQS 93 (113)
T ss_pred CccCCCCCCCCCCCCCCcccCCCCCC------CCCCCCCcccCCCCCCCC--cCCCCcccCCC
Confidence 477775554 35677777763321 123455567776443212 22245666543
No 7
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=89.93 E-value=2.3 Score=39.95 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQS-LPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~-L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
..|..+.-+-+++-+++||.|++++|..+..... -...+ +.....++...--.+.++.+...+..+++|+.
T Consensus 39 ~~~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~--------lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~ 110 (208)
T PF14644_consen 39 QSYQEQADEYHNSCLQELRNQVERLEELLPKVPE--------LVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQ 110 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556667778889999988853311 00111 11233444444445666666677777788888
Q ss_pred HHHHHh-hcCCCCC
Q 015366 165 YLADQR-RRGDGSD 177 (408)
Q Consensus 165 YL~~rR-r~GD~~D 177 (408)
+.+..| .+|+..|
T Consensus 111 h~~~LrP~LghP~~ 124 (208)
T PF14644_consen 111 HEQQLRPNLGHPDN 124 (208)
T ss_pred HHHhCCCcCCCCCC
Confidence 888877 5775543
No 8
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=89.51 E-value=7.8 Score=29.56 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
...+|+..+..+..||.+.|..|..... + ..+.++...+.+ +-.+-..+...+++|+.+.+.--.+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~-----~~~~~~~~~~~~----~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEP--G-----SDLEELEEQLKK----HKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTH--S-----SSHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--C-----CCHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999943321 1 124444444443 3333445555666666666555555
No 9
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=86.27 E-value=5.9 Score=37.31 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcchhhhHHHHHHHHHhhccCCccccCCCCC
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR-RRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNS 207 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR-r~GD~~DPFaEAdRrE~Arkraaa~RV~Pt~~lPAp~ 207 (408)
.+.+..-|+.+.+..-.|.+-| ++.+++.|...-. ++.+..+.|..-.++-...+.++...++|++.-|...
T Consensus 53 ~~elR~qv~~l~~~l~~v~~lv------~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~~~ 125 (208)
T PF14644_consen 53 LQELRNQVERLEELLPKVPELV------FESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGHPDNR 125 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCH
Confidence 4555555555555444443322 4455566655544 4666667776666667777888888999999987653
No 10
>smart00150 SPEC Spectrin repeats.
Probab=84.95 E-value=15 Score=27.97 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+|++.+.....||++.|..+....- + ..+..+...+ +.+-.+-..++..+++|+.+.+..-.+.+.
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~--~-----~d~~~~~~~~----~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDL--G-----KDLESVEALL----KKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCC--C-----CCHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 6899999999999999987753311 1 1133333333 334444445566666677766665555444
No 11
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=84.77 E-value=7.9 Score=40.05 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPD-RNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~-~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
+.+.+..++.++++.+++.+++++++.+..... +... ..+.+....++++.+.+..+-.+++.+.++++++++..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQG----KLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999855432 1111 23567788888899999999999999999988888776
Q ss_pred HHH
Q 015366 166 LAD 168 (408)
Q Consensus 166 L~~ 168 (408)
.+.
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 655
No 12
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=82.84 E-value=13 Score=32.68 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.6
Q ss_pred ccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcC
Q 015366 85 PSAFLQQTVA----------RFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 85 PSpFF~elV~----------~FEerL~~yRQqIEELEr~L~s~ 117 (408)
|..|-.+++. +.+..+......|+|++++|...
T Consensus 10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~ 52 (132)
T PF10392_consen 10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQ 52 (132)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777 78999999999999999999644
No 13
>PRK04406 hypothetical protein; Provisional
Probab=82.39 E-value=3.6 Score=33.72 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~ 160 (408)
+.+....+.|++||-.+.... ...++|..+|-.+++-.-.|-.++..|.+++++
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE---------~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQE---------QTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444556667777665442 235666777777777666666666666666554
No 14
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=82.32 E-value=1.1e+02 Score=35.80 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhhhcc
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVRSFMMLR 33 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvRsf~~lR 33 (408)
.+-+.|||.+..+.=-+-+.|-..|.+|-
T Consensus 364 e~Dl~el~~rledir~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 364 EDDLEELSGRLEDIRAEMDDANEVFELLA 392 (1102)
T ss_pred hhhHHHHHhHHHhhhhhhccHHHHHHHHH
Confidence 36788888776666666666777777664
No 15
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.65 E-value=3.7 Score=40.98 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 99 rL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
.+++..++|++||+-+.-..+ ..+||...++.+.+..=.+.+.|+..|+.|+..++.--..
T Consensus 174 ~ieeR~q~I~~lE~dI~dvN~---------IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA 234 (269)
T KOG0811|consen 174 LIEEREQAIEQLEADIIDVNE---------IFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445588899999999965432 4899999999999999999999999999999887654433
No 16
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=74.41 E-value=30 Score=28.10 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE 163 (408)
|+-.++.+..+-|.+.++.++++|+.+.-. -.++...+++.++.-..+-.+++.+..-++.+++
T Consensus 16 ~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i------------~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 16 FLIKVLKKLKKTLDEVNKTIDTLQEQVDPI------------TKEINDLLHNTNELLEDVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555667777777777788888777777322 3455667777777776666666666655554443
No 17
>PRK04325 hypothetical protein; Provisional
Probab=73.44 E-value=23 Score=28.86 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 107 IEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 107 IEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
|++||-.+.-.. .+.++|..+|-++++-.-.|..++..|.++++++
T Consensus 11 i~~LE~klAfQE---------~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQE---------DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777775442 2366777777788877777777777777776664
No 18
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=73.42 E-value=38 Score=30.87 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEE----LEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEE----LEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
|=++|+.++++..+.+++|+. |+..+... +.+.|...+....+-...+++..+.||.--.++++.
T Consensus 25 FPkTI~~L~e~A~qh~~~Il~eye~mk~~~~~~-----------Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ 93 (125)
T PF13256_consen 25 FPKTIDTLKEQAEQHKEQILHEYEGMKKKVKVT-----------SIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDY 93 (125)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999864 44444322 378999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 015366 165 YLADQRR 171 (408)
Q Consensus 165 YL~~rRr 171 (408)
|+.....
T Consensus 94 ynq~qe~ 100 (125)
T PF13256_consen 94 YNQIQEE 100 (125)
T ss_pred HHHHHHH
Confidence 9998875
No 19
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=73.16 E-value=18 Score=31.61 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc-cccchHHHHHHHHHHHHHH
Q 015366 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSS-LLQSLPQVISNVHIFFVHV 147 (408)
Q Consensus 97 EerL~~yRQqIEELEr~L~s~s~~~~S~itss-aPQ~L~~aL~n~Hq~FVaL 147 (408)
|+=+..++.+||-..+-|.+.+.+ +.++..+ +.|.|=..|.++|--.+..
T Consensus 1 ~ef~~~l~~~v~if~nRmksns~R-GrsIanDsaVqsLF~~lt~mH~~LL~~ 51 (96)
T PF12210_consen 1 EEFCNTLRSSVEIFVNRMKSNSSR-GRSIANDSAVQSLFQTLTAMHPQLLKY 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-T--GGG-HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhHhc-CCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 344667788888888888765542 3333322 5777777777777655544
No 20
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=72.90 E-value=85 Score=32.23 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=59.9
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHH
Q 015366 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQ-WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (408)
Q Consensus 74 v~Dfys~~p~~PSpFF~elV~~FEerL~~yRQ-qIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla 152 (408)
+.+-+.+..+.|-.=+.+.+++=.--..+||| +-+|.|.++.- +++|...-+++.+ |+.
T Consensus 213 ~ie~s~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge-------------~~~Le~rN~~LK~-------qa~ 272 (294)
T KOG4571|consen 213 QIEKSAHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGE-------------LEGLEKRNEELKD-------QAS 272 (294)
T ss_pred cccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH-------HHH
Confidence 34567778889999999988888778889998 56677776631 3455555555444 788
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 015366 153 SIHQYVETMKTAYLADQRRRG 173 (408)
Q Consensus 153 ~LHE~Ve~lKE~YL~~rRr~G 173 (408)
++|-+|..||+..++.++.++
T Consensus 273 ~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 273 ELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999887644
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.63 E-value=15 Score=44.22 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=70.1
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCCCCcccccchHHHHHHHHHHH
Q 015366 78 YRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD-------------RNSSSHGSSLLQSLPQVISNVHIFF 144 (408)
Q Consensus 78 ys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~-------------~~~S~itssaPQ~L~~aL~n~Hq~F 144 (408)
+-+++.++.+-+...+++|++++.+++.++.++|+.+..... +..+-+..+...+-..-+...|...
T Consensus 429 ~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~ 508 (1486)
T PRK04863 429 LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508 (1486)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHH
Confidence 667778888999999999999999999999999997733221 0011122233455566778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 145 VHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 145 VaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
-++|+++..+..++.+++..+-..++
T Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 509 RHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885554433
No 22
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.80 E-value=19 Score=32.56 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIH 155 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LH 155 (408)
++.+.++++++.+.++.+.+++.++....+...... ...++....++.+.+.+-.+..++..+.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELR--ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554432211001000 1133444455555555555555555555
No 23
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=69.65 E-value=95 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
.+...+++|.+.+..+...++++|..+
T Consensus 115 il~~~~~~~~~~l~~l~~~l~~le~~~ 141 (292)
T PF01544_consen 115 ILDEIVDDYFEVLEELEDELDELEDEL 141 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467889999999999999999999999
No 24
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=69.41 E-value=17 Score=37.20 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhccCCCCC
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKK 84 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvRsf~~lRprf~r~~~~~~~~~~~~s~~~Ga~~a~~~~~Qp~~~~~~Pv~Dfys~~p~~ 84 (408)
...|.+|.+.|.-|+.+.++|++. +.+ .
T Consensus 263 srLV~RL~deIE~~~~~v~fave~---------~~d------------------------------------~------- 290 (336)
T PF05055_consen 263 SRLVDRLEDEIEHMKALVDFAVER---------GED------------------------------------E------- 290 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------Ccc------------------------------------c-------
Confidence 345778888899999999999993 000 0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 85 PSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 85 PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.-.++.++++++....+++||||||.|+-..
T Consensus 291 --~~vk~vv~el~k~~~~f~~qleELeehv~lC 321 (336)
T PF05055_consen 291 --EAVKEVVKELKKNVESFTEQLEELEEHVYLC 321 (336)
T ss_pred --hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0135679999999999999999999998544
No 25
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=69.25 E-value=45 Score=34.71 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 95 RFEKYLGEFRQWIEELEQLILL-DPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L~s-~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE 163 (408)
++|+.|....+|-.-+|+.|.. ..++++. ..+.|...|+.-|+-++.++.++++++++++..+.
T Consensus 218 ~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~-----~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~ 282 (377)
T PF14728_consen 218 ELEEELDERAQQFRAIQRRLLTRFKDKNPA-----PLDNLDTLLEGTYRQLIALADEIEELQANLKRAGA 282 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445555556666643 2234443 26899999999999999999999999999877654
No 26
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=68.94 E-value=43 Score=35.13 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR 172 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~ 172 (408)
+.+.|.++.++.+++++||..+...+.++. ..-|-.--+|.+.+|++=-.+...|+..-..--....++
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~-----------~dWlLaEaeyLlrlA~qkL~l~~Dv~tA~alLksAD~rL 169 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQKVATISGSDA-----------KTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASL 169 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344444555555555555555554432111 123333456677777766666666666666666666677
Q ss_pred CCCCCcchhhhHHHHHHHHHh
Q 015366 173 GDGSDPFLEADRRETARQEAA 193 (408)
Q Consensus 173 GD~~DPFaEAdRrE~Arkraa 193 (408)
.+..||=+-.=|+..+++-+.
T Consensus 170 a~~~dP~l~~lR~Aia~DI~~ 190 (390)
T PRK10920 170 ADMNDPSLITVRRAITDDIAT 190 (390)
T ss_pred HhcCCcchHHHHHHHHHHHHH
Confidence 777888777767766666553
No 27
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=68.36 E-value=26 Score=27.45 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
..-+.++++++..+++.|+-++..|... . +-+-+|.++...-.. -...+-.+++.|.++++.||
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~-----~-F~~kAP~eVve~er~---kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNE-----N-FVEKAPEEVVEKERE---KLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCST-----T-HHHHS-CCHHHHHHH---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc-----c-ccccCCHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 4568899999999999999999998422 1 222467776554433 33344556677777777664
No 28
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=67.86 E-value=53 Score=32.59 Aligned_cols=76 Identities=11% Similarity=0.192 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR 172 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~ 172 (408)
++..++++..+++.++.+++.+..... . ...-......+.+.....-.++..|.+..+++++.|-+.+++.
T Consensus 276 ~~~l~~~i~~l~~~~~~~~~~l~~~~~--~-------~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 276 LDELEQDIKELEKGLEKIKKELEAIEK--D-------EEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCT--T-------SSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--c-------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777788888888888888865533 1 1112334555566666778899999999999999999999998
Q ss_pred CCCCC
Q 015366 173 GDGSD 177 (408)
Q Consensus 173 GD~~D 177 (408)
|+..+
T Consensus 347 ge~~~ 351 (370)
T PF02181_consen 347 GEDPK 351 (370)
T ss_dssp T--TT
T ss_pred CCCCC
Confidence 86544
No 29
>PRK13879 conjugal transfer protein TrbJ; Provisional
Probab=67.54 E-value=45 Score=33.16 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=30.5
Q ss_pred cchhhhccCCCCCccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 72 VPVFDFYRGLPKKPSAFLQ------QTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 72 ~Pv~Dfys~~p~~PSpFF~------elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.||+| |..|.+ +.|.++.+++++|+.||..+|+.+.-.
T Consensus 28 ipV~D--------~an~aqni~~a~~~v~q~~~Qi~Qlq~Qiqqy~nql~Nl 71 (253)
T PRK13879 28 IPVID--------GTNLSQNIMTAIESVAQTLKQIEQYQTQLQQYENMLQNT 71 (253)
T ss_pred CCeee--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47877 667754 578888999999999999999988644
No 30
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.25 E-value=23 Score=39.64 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 86 SAFLQQTVARFEKY-LGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 86 SpFF~elV~~FEer-L~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
.+++.+.++.|.++ +....+--+|+|+++..+........ .-.+++....+.+.+.=..||.|++.+.++=+.+.+.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql--~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL--KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888544 66666677888888754422000000 0133444444444444445555555555554444444
Q ss_pred HHHHHhhcCCCCCcchhhhHH
Q 015366 165 YLADQRRRGDGSDPFLEADRR 185 (408)
Q Consensus 165 YL~~rRr~GD~~DPFaEAdRr 185 (408)
--+.++..++..-+-.+++|+
T Consensus 616 ~~~vl~~l~~~~P~LS~AEr~ 636 (717)
T PF10168_consen 616 VDRVLQLLNSQLPVLSEAERE 636 (717)
T ss_pred HHHHHHHHhccCCCCCHHHHH
Confidence 444444444332234455553
No 31
>PRK00846 hypothetical protein; Provisional
Probab=65.42 E-value=19 Score=30.13 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 101 GEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 101 ~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
....+.|++||-.+.... .+.++|-.+|-++.+..-.|..++..|.++++++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe---------~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQE---------QALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344567888888776542 23455566666666655555555555555555443
No 32
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.34 E-value=13 Score=30.10 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 104 RQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (408)
Q Consensus 104 RQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~ 160 (408)
.+.|++||-.+.... .+.++|..+|-++.+-.-.|..++..|.+++++
T Consensus 7 e~Ri~~LE~~lafQe---------~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQE---------ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666665432 124555566666665555555555555555444
No 33
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=65.26 E-value=53 Score=31.84 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=52.2
Q ss_pred ccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 85 PSAFLQQ------TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYV 158 (408)
Q Consensus 85 PSpFF~e------lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~V 158 (408)
|..|.+. .|++..+++++|+.||..+|..+.-... .|..+-.-+...-.-+..|-.+...|-..+
T Consensus 31 ~an~~q~i~~aa~~~~q~~~Qi~qlqnQiq~y~nql~n~~~---------L~~~~~~~~~~~l~~l~~L~~q~q~l~~~~ 101 (246)
T TIGR02780 31 CANFSQQILTAAESVEQLNNQIQQLQNQIQRYENQLKNTMS---------LPANIWNRLESSLQKLTNIISQAQALAYDI 101 (246)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667774 4888999999999999999999865432 122222333333334446667777788888
Q ss_pred HHHHHHHHHHHh
Q 015366 159 ETMKTAYLADQR 170 (408)
Q Consensus 159 e~lKE~YL~~rR 170 (408)
+++.+.|.....
T Consensus 102 ~~~~~~f~~~y~ 113 (246)
T TIGR02780 102 ANLDDIFSQLYQ 113 (246)
T ss_pred HHHHHHHHHHCc
Confidence 888888876654
No 34
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=64.53 E-value=41 Score=31.54 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
+-.+-+|++++...++|+|||+++....+.-.+ =-|-...+=..-++.+|+.|-++|.++-+.|
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs-----------Yqll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVS-----------YQLLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346778999999999999999999766542222 1122233344567777788877777654444
No 35
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.43 E-value=66 Score=30.35 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
.++|.++..++.+||+.+.|||+.+..
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~ 41 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSA 41 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999954
No 36
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=63.88 E-value=84 Score=32.57 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015366 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGD 174 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~GD 174 (408)
..++.+..+++.++++|..+..... .. ..+ ......+.++......+++.|.+.++++++.|-+..+..|.
T Consensus 279 ~l~~~~~~l~~~~~~~e~~~~~l~~--~~------~~~-d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge 349 (432)
T smart00498 279 QLEKDVKQLERQIKNLETDLGGLSD--PE------NLD-DKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGE 349 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CC------Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456677777888888876544322 11 011 23445556666777889999999999999999999998773
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.75 E-value=85 Score=28.28 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ--------YVETMKT 163 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE--------~Ve~lKE 163 (408)
-+.++++++...++.+.+|+.-|..... . .+-.+|...+.++-+-.-.+-+||+.|++ .+++++.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~----~---~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSS----E---PTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEK 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3666777777777777777776665532 1 22577888888888888888888888875 3555555
Q ss_pred HHHHHHh
Q 015366 164 AYLADQR 170 (408)
Q Consensus 164 ~YL~~rR 170 (408)
.|..+++
T Consensus 153 ~~~~~~k 159 (169)
T PF07106_consen 153 EYKKWRK 159 (169)
T ss_pred HHHHHHH
Confidence 5554433
No 38
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.52 E-value=1.5e+02 Score=29.20 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L 114 (408)
+++-+...++++++-++-|+.||.-|
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL 29 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDL 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888999999999999877
No 39
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=62.77 E-value=98 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
..+|.+++..+..||++.|..|...
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~ 26 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSST 26 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCc
Confidence 4689999999999999999998654
No 40
>PRK02119 hypothetical protein; Provisional
Probab=62.30 E-value=20 Score=29.13 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 104 RQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (408)
Q Consensus 104 RQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~ 160 (408)
...|++||-.+.... ...++|..+|-++.+-.-.|..++..|.+++++
T Consensus 8 e~Ri~~LE~rla~QE---------~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQE---------NLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666664432 224556666666666666666666666665554
No 41
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.15 E-value=68 Score=29.62 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL 166 (408)
.=++.+.++|..++...|++|-.-..-|.++-.. +.+. ..+++ +|+.++..|++++.+++..|-
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~-~~pD--------~~kI~-------aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTA-NPPD--------SSKIN-------AVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCC--------HHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999885433333332211 1111 22333 445566666666666655554
Q ss_pred HHHh
Q 015366 167 ADQR 170 (408)
Q Consensus 167 ~~rR 170 (408)
...+
T Consensus 114 ~~~~ 117 (143)
T PRK11546 114 IAMA 117 (143)
T ss_pred HHHH
Confidence 4443
No 42
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=62.14 E-value=91 Score=26.40 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 133 LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 133 L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
...-+..+.+.....-..|+.+...|+..++.+++.++
T Consensus 66 ~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 66 YQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555656666666777777888877766
No 43
>PRK10963 hypothetical protein; Provisional
Probab=61.81 E-value=10 Score=35.94 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV--AAKAESIHQYVETMKTAY 165 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL--AArla~LHE~Ve~lKE~Y 165 (408)
+|.=-|-+|+..|++|++||..|...-. .-.+--...+++|+.-++| |..++.+.+.++.+++.|
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~Li~---------~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~~~~~~f 104 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLLME---------QAIANEDLFYRLLPLQSRLAAADSLQDMLMRLHRWARDL 104 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 3666788999999999999998854421 1234456777777777766 334444444444444443
No 44
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.92 E-value=52 Score=28.21 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE 163 (408)
=+++.++++....+.+..+|..+..... + +-..+|...|.++..-.-.+.++++.|...++-+=|
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt----~---~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPT----R---DDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC----H---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888889999999998876632 1 225566666666666666666666666555554433
No 45
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=60.30 E-value=1e+02 Score=26.94 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 132 ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
....-+.++++...+....|+.+-..|+..++.+++.+++
T Consensus 68 ~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~ 107 (147)
T PRK05689 68 NYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQR 107 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334477777777777788888888888888888888763
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.18 E-value=1.4e+02 Score=28.71 Aligned_cols=63 Identities=5% Similarity=0.110 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
...+.+.|++++..+++++++.+... +.-+++...+....+....|-.+-+.|+++++++|+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~------------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN------------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555554322 1134555666665555555555555555555555444
No 47
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=57.35 E-value=94 Score=34.35 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHh
Q 015366 142 IFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAA 193 (408)
Q Consensus 142 q~FVaLAArla~LHE~Ve~lKE~YL~~rRr~GD~~DPFaEAdRrE~Arkraa 193 (408)
+|.+.+|.+=-.|...|+......-....++.+..||=+-.=|+..+++-+.
T Consensus 424 e~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~~ 475 (656)
T PRK06975 424 EQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIER 475 (656)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4555555555555555555555555555566667888555556666665554
No 48
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.10 E-value=55 Score=26.06 Aligned_cols=27 Identities=4% Similarity=0.092 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 134 PQVISNVHIFFVHVAAKAESIHQYVET 160 (408)
Q Consensus 134 ~~aL~n~Hq~FVaLAArla~LHE~Ve~ 160 (408)
..+|-.+++-.-.|-.++..|.+++++
T Consensus 24 n~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 24 NDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444333333344444443333
No 49
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.71 E-value=28 Score=35.70 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.|.|..-+++....+..||...+.|.++|+.=|-.|=..|+|
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR 155 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888888999999999999999999888887775
No 50
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=56.34 E-value=19 Score=38.46 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=29.3
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 75 FDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 75 ~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
...|..+..+|-|.|. +||+-+.+++.+|+||++.-
T Consensus 61 ~~~~~~~~~~~~~~~l----~fe~pi~ele~ki~el~~~~ 96 (431)
T PLN03230 61 LNRFKPLKNKPKPVTL----PFEKPIVDLENRIDEVRELA 96 (431)
T ss_pred HHhcCCCCCCCCCCcc----chhhHHHHHHHHHHHHHhhh
Confidence 3456677788888875 59999999999999998864
No 51
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.22 E-value=1e+02 Score=27.90 Aligned_cols=69 Identities=12% Similarity=0.234 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~r 169 (408)
-+...++++.+..+.++++++.+..... -..++........+-+..+..+++.+.+.++++.+.+.+.+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELES---------ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777754321 13444445555555555555555555555555555555554
No 52
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=55.04 E-value=1.4e+02 Score=30.64 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=16.0
Q ss_pred hcCCCCCcchhhhHHHHHHHHHhh
Q 015366 171 RRGDGSDPFLEADRRETARQEAAA 194 (408)
Q Consensus 171 r~GD~~DPFaEAdRrE~Arkraaa 194 (408)
++.+..||=+..=|+..+++-+.=
T Consensus 162 rLa~~~dp~l~~vR~Ala~Di~~L 185 (372)
T PF04375_consen 162 RLAELDDPSLLPVRQALAQDIAAL 185 (372)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHH
Confidence 344456887777777777776653
No 53
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=54.87 E-value=1.2e+02 Score=26.06 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 015366 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA---------AKAESIHQYVETMKTAY 165 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA---------Arla~LHE~Ve~lKE~Y 165 (408)
+.-+.+..++..|.+|...|.... -.++..-|.++|+++..-- ..++.+..-++++|+.+
T Consensus 47 ~~~~~l~ka~~Ii~~L~~~Ld~e~-----------g~eia~~L~~lY~y~~~~L~~A~~~~d~~~l~~v~~~l~~l~~aW 115 (122)
T PF02561_consen 47 EKNEALQKAQDIITELQSSLDFEK-----------GGEIADNLFRLYDYMIRQLVQANLKKDPERLDEVIRILEELRDAW 115 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTT-----------THHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC-----------CcHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344455555556665555553221 2478899999999987432 34445555566666665
Q ss_pred HHHHh
Q 015366 166 LADQR 170 (408)
Q Consensus 166 L~~rR 170 (408)
-+..|
T Consensus 116 ~e~~k 120 (122)
T PF02561_consen 116 EEIAK 120 (122)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 54
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=54.70 E-value=33 Score=27.13 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 132 ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+|...+-+=|.-||..+..+..+.+.+.++++.--+...
T Consensus 41 eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 41 ELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777777777777777766665554443
No 55
>PRK00295 hypothetical protein; Provisional
Probab=54.46 E-value=31 Score=27.72 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 106 WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 106 qIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
.|++||-.+.-.. ...++|..+|-++++-.-.|-.++..|.++++++
T Consensus 6 Ri~~LE~kla~qE---------~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQD---------DTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666664432 2245555555566655555555555555555543
No 56
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=54.10 E-value=1.4e+02 Score=26.11 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+.-+++|....+..++.+..+..... .+++.........-+..+.+.....-..|+.+...|+..++.+++.++
T Consensus 33 ~~~~~~L~~L~~~~~~~~~~~~~~~~---~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~ 106 (146)
T PRK07720 33 EQVAEKLYELLKQKEDLEQAKEEKLQ---SGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNI 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555533221 122211233334455566666666666677777778888888888876
No 57
>PRK09039 hypothetical protein; Validated
Probab=54.07 E-value=81 Score=32.17 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
||.+.+..+++.|.+...+|.+|=..|...
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le 72 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLE 72 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999998877666443
No 58
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.06 E-value=1.4e+02 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 137 ISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 137 L~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
|..+.+-...+-.+.-.|-..+++|+
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 59
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.99 E-value=1.5e+02 Score=30.35 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV-AAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL-AArla~LHE~Ve~lKE~YL~~rR 170 (408)
.++..+.+.|..||+.|.......+.-.....+..|..+|+.++.-.--| -++|+.|+.+|+.+...+-+.-.
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~ 282 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE 282 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777778899999763332221000012566777777776665544 45788888888888776644433
No 60
>PRK00736 hypothetical protein; Provisional
Probab=53.67 E-value=70 Score=25.69 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 106 WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (408)
Q Consensus 106 qIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~ 160 (408)
.|++||-.+.-.. .+.++|..+|-++.+-.-.|-.+|..|.+++++
T Consensus 6 Ri~~LE~klafqe---------~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQE---------KTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667776665432 124455555555555555555555555555444
No 61
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.01 E-value=2.1e+02 Score=28.98 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 93 VARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s 116 (408)
.+-+++++.++++++++.|+.|..
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777776643
No 62
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.87 E-value=1e+02 Score=30.00 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=33.0
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 75 FDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 75 ~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.|+|+-+----.+-+-.-+.+++++++..++.+..+|.-+..+
T Consensus 70 QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 70 QDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777755333445566668899999999999999999988655
No 63
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=52.69 E-value=52 Score=27.55 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=40.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 015366 84 KPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAK 150 (408)
Q Consensus 84 ~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAAr 150 (408)
.-|+.+++++.++|++|...=+-|||=..-+.--++-+.. -=-+|-..++.+|+....||.|
T Consensus 11 ~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~-----kRp~Li~~vee~yr~YrsLAer 72 (74)
T PF07765_consen 11 KQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYK-----KRPELISLVEEFYRSYRSLAER 72 (74)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhc-----ccHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999888888711111000000000 0125677888888888888876
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=52.45 E-value=69 Score=31.74 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
..-|.++|.+++..+.+|+..|..|..... . .-..+|..-+....+--..+=..+..|+++++++
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~-----~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKLSAVKD--E-----RELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888888877732221 1 1133444444444444444444444444444444
No 65
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=52.42 E-value=26 Score=33.38 Aligned_cols=83 Identities=13% Similarity=0.228 Sum_probs=55.8
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Q 015366 75 FDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESI 154 (408)
Q Consensus 75 ~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~L 154 (408)
++||+.+. =.-.+|++||+++..++--+...-+.+..-. +.....+..+-++=..+.++++++
T Consensus 55 wa~Yrk~v-----a~a~~VD~~ek~y~slk~v~~~~~ky~~~vd------------a~~k~~~~~~ke~~~~s~~~iq~l 117 (172)
T KOG3366|consen 55 WAYYRKVV-----ANAGLVDKYEKKYDSLKPVPVDEDKYLKEVD------------AEEKAAVKEIKEYESLSKKRIQEL 117 (172)
T ss_pred HHHHHHHh-----hhhHHHHHHHHHHHhccccCCCHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77898874 4578899999999999843333333333221 233456666777777888888888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhHHH
Q 015366 155 HQYVETMKTAYLADQRRRGDGSDPFLEADRRE 186 (408)
Q Consensus 155 HE~Ve~lKE~YL~~rRr~GD~~DPFaEAdRrE 186 (408)
...++.+|.. =||.++.+++
T Consensus 118 ~k~le~v~~~------------~P~demT~ed 137 (172)
T KOG3366|consen 118 EKELEKVKSA------------RPFDEMTMED 137 (172)
T ss_pred HHHHHHHHhc------------CCcccccHHH
Confidence 8888877753 3666766554
No 66
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.41 E-value=51 Score=37.03 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=39.0
Q ss_pred chhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015366 73 PVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD 119 (408)
Q Consensus 73 Pv~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~ 119 (408)
|.-|.|..+ .+|+.++-.++++|+.+++.-++++|++-.-.++
T Consensus 100 tLke~l~~l----~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 100 TLKEQLESL----KPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred cHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688999999 8999999999999999999999999998866654
No 67
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=51.61 E-value=90 Score=23.67 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE 159 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve 159 (408)
-...|++.|...+..|+.+...-..... ..+. ....|...++.++..+-.|-..+..-.++++
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~--~~~~---~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLID--SGPE---DSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTHT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH--cCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3556666666666666666654433311 1111 2466677777777777666555554444443
No 68
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=51.26 E-value=2e+02 Score=28.18 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh-cCCCCCcch
Q 015366 132 SLPQVISNVHIFFVHVAAKAESIHQY---VETMKTAYLADQRR-RGDGSDPFL 180 (408)
Q Consensus 132 ~L~~aL~n~Hq~FVaLAArla~LHE~---Ve~lKE~YL~~rRr-~GD~~DPFa 180 (408)
+|...-+++++-|...-++.+.|+++ |+++-+.|...|+. ++-++||=+
T Consensus 61 dLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sL 113 (201)
T PF11172_consen 61 DLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASL 113 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 55665555555555555555555554 78888999999994 888888843
No 69
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=51.09 E-value=23 Score=32.82 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 015366 93 VARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~ 115 (408)
+.-+|.||+.|++-|+.||+.+.
T Consensus 147 i~a~e~RL~RCr~Ai~~iE~~I~ 169 (173)
T PF07445_consen 147 ILALEQRLQRCRQAIEKIEEQIQ 169 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888774
No 70
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.77 E-value=98 Score=33.89 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH
Q 015366 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV 147 (408)
Q Consensus 97 EerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL 147 (408)
++++++|+++|++|+.. + + ..|.+|....+.+.+..-..
T Consensus 190 ~~~~~~yk~~v~~i~~~------~----i--k~p~~i~~~~~e~d~lk~e~ 228 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKK------D----I--KNPLELQKIKEEFDKLKKEG 228 (555)
T ss_pred chhHHHHHHHHHHHHhc------c----C--CCHHHHHHHHHHHHHHHHHH
Confidence 34556666666666652 0 1 12666666666555444433
No 71
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=50.47 E-value=1.4e+02 Score=24.40 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
|.+.|+.-...|..++..|++|++....... .. +..+.+...|+.+-+ ..=.....|.+.|+.+++..
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~--~~----~~~~~~~~~l~~~~~---~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAELQKLHEELLT--PP----DADKELREKLERLID---DIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cC----chhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhH
Confidence 4457899999999999999999988754421 10 111334444444443 33344555666666665544
No 72
>PRK14139 heat shock protein GrpE; Provisional
Probab=50.45 E-value=73 Score=30.33 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcch
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRG-----DGSDPFL 180 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~G-----D~~DPFa 180 (408)
..+|-.++.++.....+.-..+..|.+.|+.....+++...++| -..+||+
T Consensus 85 ~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FD 140 (185)
T PRK14139 85 AESLLPVKDSLEAALADESGDLEKLREGVELTLKQLTSAFEKGRVVEINPVGEKFD 140 (185)
T ss_pred HHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCCC
Confidence 44555555565555433334467788999999999999988655 2357773
No 73
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.14 E-value=1.2e+02 Score=28.05 Aligned_cols=34 Identities=0% Similarity=-0.068 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 135 ~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
..++.++|=.+.|=-++..+-+++.++++.+-.+
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333444444444444333
No 74
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=50.08 E-value=1.3e+02 Score=27.42 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
++|.++|..++..++++...+ .++-..|..+.+-|..|-.+...+|+.-+++=+....+
T Consensus 3 ~~y~~~L~~~~~~~~~ll~~~----------------~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L 61 (157)
T PF04136_consen 3 RQYLDYLQQYREECDQLLDQT----------------DEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRL 61 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455666666666555543333 23355677777777788888888887766664444444
No 75
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.92 E-value=1.3e+02 Score=26.50 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.++.+..+..++.+++++|+-+...-. -...+...+..+....-.....++.+.-.++..|.+|-...|+
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~---------~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rk 137 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEE---------KERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRK 137 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666665542211 1344555666666666666667777777777778888877664
No 76
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=49.80 E-value=98 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
=+++.|+.+.+||..+|.+|+.|...
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~ 31 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRR 31 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHccc
Confidence 47899999999999999999999754
No 77
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=49.74 E-value=24 Score=29.18 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIH 155 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LH 155 (408)
+-.-|++....+++.+++|+.++...++ .|.+-...+-.+|+.++.+-+-+..-+
T Consensus 32 lk~~f~~~~~~~~~~~~~L~~~i~~~Gg---------~p~~~gs~~g~~~r~~~~ik~~~~~~d 86 (111)
T PF09537_consen 32 LKSLFQEFAQERQQHAEELQAEIQELGG---------EPEESGSFKGALHRAWMDIKSALGGDD 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-----------H----HHCHHHH-TTTHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CcCcccCHHHHHHHHHHHHHHHhcCCC
Confidence 3567889999999999999999987753 156667888899999998866444443
No 78
>PRK09039 hypothetical protein; Validated
Probab=49.48 E-value=99 Score=31.55 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ----YVETMKTAYLADQR 170 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE----~Ve~lKE~YL~~rR 170 (408)
.+++..++||+.|++.+.... ..+.++...-...++.+..+..+|+..-+ +++.+|..|....|
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le---------~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALE---------AALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345566666666666664432 12444455556667777777777776642 34555677755544
No 79
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=49.46 E-value=25 Score=33.52 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
+++-|.-+|.|++.||.-||-+|+.|..
T Consensus 145 lqqel~~~e~RlarCr~AlekiE~~l~~ 172 (175)
T COG3923 145 LQQELEAYEQRLARCRHALEKIENRLAR 172 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778899999999999999988753
No 80
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.06 E-value=38 Score=28.31 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 102 EFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (408)
Q Consensus 102 ~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE 163 (408)
...+.|+|||-.+.... .+.+.|..++-.+....-.+.++|..|-++++++..
T Consensus 5 ~lE~Ri~eLE~r~AfQE---------~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQE---------QTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445556665554331 235566666666666666777777777776665543
No 81
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.96 E-value=83 Score=29.43 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
|.++.++||++-.+..+.++++.+.-.. ....+|-.++.++-...-+.......|++.|+....++++.
T Consensus 41 ~lR~~Ad~eN~rkR~~kE~e~~~~~a~~-----------~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~k~l~~~ 109 (172)
T PRK14147 41 ALRERADLENQRKRIARDVEQARKFANE-----------KLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYKQLLKV 109 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655554443321 12445555666665555444445678999999999999999
Q ss_pred HhhcC-----CCCCcc
Q 015366 169 QRRRG-----DGSDPF 179 (408)
Q Consensus 169 rRr~G-----D~~DPF 179 (408)
..+.| -.-+||
T Consensus 110 L~~~Gv~~i~~~G~~F 125 (172)
T PRK14147 110 AADNGLTLLDPVGQPF 125 (172)
T ss_pred HHHCCCEEeCCCCCCC
Confidence 88755 335778
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.83 E-value=1.1e+02 Score=34.06 Aligned_cols=94 Identities=14% Similarity=0.219 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCC-----------CCCCCcccccchHHHHHHHHHHHHHHH
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLD------PDRN-----------SSSHGSSLLQSLPQVISNVHIFFVHVA 148 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~------s~~~-----------~S~itssaPQ~L~~aL~n~Hq~FVaLA 148 (408)
..||...+++-++.=.+.+.++++-..+-+.. .... +.+.....-++|..+|+++..-|+.+=
T Consensus 348 ~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f~~~~ 427 (617)
T PF15070_consen 348 VEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSRFMDLM 427 (617)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 35888899999988888888888765431000 0000 001111135678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hcCCCCCcc
Q 015366 149 AKAESIHQYVETMKTAYLADQR---RRGDGSDPF 179 (408)
Q Consensus 149 Arla~LHE~Ve~lKE~YL~~rR---r~GD~~DPF 179 (408)
-+.+.|.|+|+++--.++.+.- ..|++--.+
T Consensus 428 ~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly 461 (617)
T PF15070_consen 428 EEKADLKERVEKLEHRFIQLSGETDTIGEYITLY 461 (617)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCccchhhhhccc
Confidence 9999999999999998888755 256665444
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.88 E-value=2e+02 Score=25.61 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL 166 (408)
..|.-.+.+.|-.+..++.+++.|++.=... -+.|...+ .-++-.-....++..|..+++++.+.|-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l------------~~Eiv~l~-~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDEL------------REEIVKLM-EENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555669999999999999999888754322 23444433 3445556777788888888888888888
Q ss_pred HHHhhcC
Q 015366 167 ADQRRRG 173 (408)
Q Consensus 167 ~~rRr~G 173 (408)
....-.|
T Consensus 86 t~LellG 92 (120)
T PF12325_consen 86 TLLELLG 92 (120)
T ss_pred HHHHHhc
Confidence 8877666
No 84
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.71 E-value=1.3e+02 Score=29.85 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV--HVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FV--aLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.+||++|.++--...-||..+-+..+.+--..+-.+...=..+|.+.|+-.- .|=.-++.|.|+.+..+|.-=+.-+.
T Consensus 71 K~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~P 150 (221)
T KOG1656|consen 71 KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAP 150 (221)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566666666666666666554332211100000012222345666665432 11112233333344444444444445
Q ss_pred cCCCCCcchhhhH
Q 015366 172 RGDGSDPFLEADR 184 (408)
Q Consensus 172 ~GD~~DPFaEAdR 184 (408)
.|=..| |+|-+=
T Consensus 151 vg~~a~-~DEDEL 162 (221)
T KOG1656|consen 151 VGFGAD-FDEDEL 162 (221)
T ss_pred cccccc-cCHHHH
Confidence 665566 877643
No 85
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=47.51 E-value=44 Score=28.21 Aligned_cols=39 Identities=5% Similarity=0.275 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
...|+.+..++..++...-=-....|++|+++++.|=..
T Consensus 60 i~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e 98 (113)
T PF02520_consen 60 ISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEE 98 (113)
T ss_pred HHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHH
Confidence 445566666666666543334566677777777766555
No 86
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=47.06 E-value=1.5e+02 Score=27.16 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (408)
Q Consensus 132 ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE 163 (408)
.|+..+..+++-+..|..+|+.+-..+..+-+
T Consensus 56 ~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l~~ 87 (145)
T PF14942_consen 56 ILPRCIELMQQNLEQLLERLQAANSMCSRLQQ 87 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666555555555433
No 87
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=46.88 E-value=68 Score=34.87 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPD 119 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~ 119 (408)
++.++++|+.+|+|+.|||..|.+...
T Consensus 27 i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 27 IKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 678899999999999999999966543
No 88
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.76 E-value=3.1e+02 Score=27.38 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhchHHHHHhhh
Q 015366 6 AQLQERMAVVKDMLRNTEIAVRSFM 30 (408)
Q Consensus 6 ~~lqeL~~~V~~mlrntE~AvRsf~ 30 (408)
.-+++-....++-|+++|.+++.|+
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777888899999999887
No 89
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.62 E-value=1.5e+02 Score=32.42 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 87 AFLQQTVARFEK-YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY 157 (408)
Q Consensus 87 pFF~elV~~FEe-rL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~ 157 (408)
.|+.+.+.+||+ +|+.-|+..|++=.-+... .+-+.+....-+.+...+.+++.-+-.+..++..+.|.
T Consensus 335 ~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l--~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~ 404 (493)
T KOG0804|consen 335 KYYEQIMSEYEQSQLENQKQYYELLITEADSL--KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREE 404 (493)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777776 4444444433332222211 11121211223334445555555555555555554443
No 90
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=46.09 E-value=78 Score=23.60 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
+....+++++.+..++..|+.|+..-...+. .. . ...-..+...+.++.+.+..+...|...++..++.
T Consensus 16 ~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~--~a-f-~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~ 84 (86)
T PF06013_consen 16 LQAQADELQSQLQQLESSIDSLQASWQGEAA--DA-F-QDKFEEWNQAFRQLNEALEELSQALRQAAQNYEQA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS--HH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchHH--HH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788888888888888888665543221 11 1 12355677788888888888888888887776653
No 91
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=46.08 E-value=30 Score=34.22 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
||-++|-=-|+-|++.+++|+|||+.|+.
T Consensus 45 ~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 45 YLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999853
No 92
>PRK14143 heat shock protein GrpE; Provisional
Probab=45.85 E-value=1e+02 Score=30.36 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcchhhhHHHH
Q 015366 130 LQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTAYLADQRRRG-----DGSDPFLEADRRET 187 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLA---Arla~LHE~Ve~lKE~YL~~rRr~G-----D~~DPFaEAdRrE~ 187 (408)
..+|-.++.++.....++. .....|++.++.+.+.+++...++| -.-+||+ ...-|+
T Consensus 120 ~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FD-P~~HEA 184 (238)
T PRK14143 120 LSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFD-PNLHEA 184 (238)
T ss_pred HHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCC-hHHhhe
Confidence 4556666667666655442 2346788889998888888888654 2347783 334443
No 93
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.68 E-value=1.9e+02 Score=29.90 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhchHHHHHhhh
Q 015366 8 LQERMAVVKDMLRNTEIAVRSFM 30 (408)
Q Consensus 8 lqeL~~~V~~mlrntE~AvRsf~ 30 (408)
|++-....++-|+.+|.+++.|+
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677788888888888875
No 94
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=45.56 E-value=1.4e+02 Score=27.96 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+++--.|.+|......+++++++-.... +.++. ..-++...|+++++..+..-.+++.|.++++++=+.|.+.-.
T Consensus 87 ~~ILa~e~~i~~~~~~Leki~~L~pvL~---se~i~--~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~ 161 (174)
T PF07426_consen 87 QIILAEEDEIKSTAELLEKIKSLEPVLD---SESIR--NVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIIL 161 (174)
T ss_pred HHHHHccHHHHHHHHHHHHHHHhhhhcC---cHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665554444444333332 11221 133456789999999999999999999999999999987643
No 95
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=45.29 E-value=3.3e+02 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=28.2
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELE 111 (408)
Q Consensus 74 v~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELE 111 (408)
..|+=.-+ ++=|.++.++|+.+++.|.++|+..|
T Consensus 135 lre~NieL----~eKlkeL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 135 LREDNIEL----SEKLKELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555545 78899999999999999999998877
No 96
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=45.01 E-value=32 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~s 118 (408)
.+|+.+....-|++|..+.+.|+.+|..|..+.
T Consensus 9 v~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLE 41 (148)
T PF10152_consen 9 VQFLNRFASVCEEKLSDMEQRLQRLEATLNILE 41 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888889999999999999999886553
No 97
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=44.96 E-value=46 Score=31.85 Aligned_cols=89 Identities=9% Similarity=-0.025 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRG 173 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~G 173 (408)
..||++|...-.|+..||+.+-.....+-....-.+.+.=..+|.++|.-+- ..+|+.|.+.++++.+.=-+.-..++
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~EIseaLs 154 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEEINQALS 154 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678888888888888888774432211000000123333457778887763 57888888888888777666666555
Q ss_pred CC-CCcchhhhH
Q 015366 174 DG-SDPFLEADR 184 (408)
Q Consensus 174 D~-~DPFaEAdR 184 (408)
.. -|..+|.+-
T Consensus 155 ~~~~~~~DEdEL 166 (191)
T PTZ00446 155 FNLLNNVDDDEI 166 (191)
T ss_pred CCCCCCCCHHHH
Confidence 33 244556544
No 98
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=44.92 E-value=58 Score=37.97 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
+..-+.+.|++++.++++|+.+|+.|..
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n 867 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQN 867 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 5677889999999999999999999953
No 99
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.33 E-value=96 Score=24.72 Aligned_cols=30 Identities=3% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 135 QVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 135 ~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
..++.+++.......+++.|..+++.+++.
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444443
No 100
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=44.10 E-value=69 Score=32.30 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 015366 158 VETMKTAYLAD 168 (408)
Q Consensus 158 Ve~lKE~YL~~ 168 (408)
+++++..|-.+
T Consensus 311 l~~l~~ay~~y 321 (356)
T cd09237 311 FEKLKKAYNSF 321 (356)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 101
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.02 E-value=2.3e+02 Score=29.13 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
|.+=.++=-+.-.+|-..|+++-.-|..++ ...|.....++.+.....=..|+.++.+|+++|+.+-++
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms-----------~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMS-----------STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677888888999888887553 467888888999999988889999999999999888766
Q ss_pred Hh
Q 015366 169 QR 170 (408)
Q Consensus 169 rR 170 (408)
.+
T Consensus 108 ~~ 109 (301)
T PF06120_consen 108 QQ 109 (301)
T ss_pred HH
Confidence 54
No 102
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=44.01 E-value=79 Score=31.67 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~r 169 (408)
+++.+.-+...+.++++++.++....++.. ...+....+..+.+.|-.+..+++.|.+.+.++++.--...
T Consensus 10 ~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~-----~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~ 80 (338)
T PF04124_consen 10 ESLFSEPQSLSEEIASLDAQLQSLAFRNYK-----TFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFS 80 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444332221 24555677777777777777777777777777766644443
No 103
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=43.85 E-value=2.3e+02 Score=28.70 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 44 ASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 44 ~~~~~~~s~~~Ga~~a~~~~~Qp~~~~~~Pv~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
.+.+.++...+|+... -.+=++.+.+.| ..+..++-+|.. .|+=+-.|..++||=|+|..
T Consensus 36 ~tsg~a~~~~~~~sTg--~~n~~a~~st~p------~~~~~s~l~~~~----LeeliNkWs~el~~Qe~vF~ 95 (254)
T KOG2196|consen 36 STSGFTFNKTPTLSTG--FGNLTADTSTKP------SEPAPSSLTYKT----LEELINKWSLELEEQERVFL 95 (254)
T ss_pred cccccccccCcccccc--cccCCCccccCc------CCCCchhhhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444322 334444455556 233444444432 34445556666777777764
No 104
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=43.83 E-value=88 Score=26.46 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.+=+.+|++-+...++++++|.+.+...
T Consensus 34 ~~E~~rl~~Al~~~~~eL~~l~~~~~~~ 61 (123)
T PF05524_consen 34 EAEIERLEQALEKAREELEQLAERAESK 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557788888888888888887776433
No 105
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=43.69 E-value=87 Score=33.99 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV------AAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL------AArla~LHE~Ve~lKE~YL 166 (408)
+.+-..++.+|++.|+..+..|.... ..++++...|.++++..|+. +...+.|-++|+.++++-+
T Consensus 52 l~q~~~~~eQY~~Ni~~A~~~L~~~E---------stL~sv~~~L~rirel~VqA~Ngt~s~~dR~aia~El~~l~~qL~ 122 (510)
T PRK12718 52 VSQTSSMNSNYDANRKQAEQALGAQT---------NTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELV 122 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888888885442 24788899999999998876 4577888888999988888
Q ss_pred HHHh
Q 015366 167 ADQR 170 (408)
Q Consensus 167 ~~rR 170 (408)
.+--
T Consensus 123 ~laN 126 (510)
T PRK12718 123 GLAN 126 (510)
T ss_pred HHHh
Confidence 7743
No 106
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.59 E-value=1.8e+02 Score=34.65 Aligned_cols=61 Identities=8% Similarity=0.221 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
...+.+...++++++++|+.+... ..+....+.++|+ +..+++.+.++++.+++...+.|+
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~-------------~~~~~L~~~q~dl---~~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSA-------------NNRQELARLRSEL---AKKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777788888777532 2234455566665 556888888888888888777766
No 107
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.59 E-value=2.1e+02 Score=27.30 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
+..|.+|-+.-++-..+++..|.+||+.+... ++++.-.-.|=.|...|+.+++..++.|
T Consensus 108 ~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~l--------------------e~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 108 SSTFARLCQQVDQTKNELEDEIKQLEKEIQRL--------------------EEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555666666655422 2233333344468888888899999999
Q ss_pred HH
Q 015366 166 LA 167 (408)
Q Consensus 166 L~ 167 (408)
|.
T Consensus 168 L~ 169 (171)
T PF04799_consen 168 LQ 169 (171)
T ss_dssp T-
T ss_pred cc
Confidence 85
No 108
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=43.54 E-value=1.6e+02 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 146 HVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 146 aLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
.+-.+++.++..++..++.+++.++
T Consensus 63 ~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 63 QQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555666665544
No 109
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=43.44 E-value=45 Score=41.22 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=60.9
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH-
Q 015366 79 RGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY- 157 (408)
Q Consensus 79 s~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~- 157 (408)
-..+.-|.||+|.+++-.|.+|..+.+.|+|=|+-|...-.+..- .. -.++.-...+.-.|+-.+.+-..+..+|..
T Consensus 2090 ks~~v~~~pytw~t~e~Le~tw~~L~~iI~eR~~el~~E~~Rq~~-N~-klc~efa~~a~tfh~wi~etr~el~~~~sgt 2167 (2399)
T KOG0040|consen 2090 KSFNVGSNPYTWFTMEALEETWRNLQQIISERERELDKEISRQEE-ND-KLCEEFACTANTFHQWIVETRKELEDGESGT 2167 (2399)
T ss_pred HhcCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 345677899999999999999999999999999999644321111 10 256777778888888888775555555322
Q ss_pred HHHHHHHHHHH
Q 015366 158 VETMKTAYLAD 168 (408)
Q Consensus 158 Ve~lKE~YL~~ 168 (408)
+|++++.-.++
T Consensus 2168 LE~Qleal~~k 2178 (2399)
T KOG0040|consen 2168 LEDQLEALKRK 2178 (2399)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 110
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=43.41 E-value=38 Score=36.54 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHhhccCCccccCCCC
Q 015366 129 LLQSLPQVISNVHIFFVHVAAKAESIHQYV-ETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVN 206 (408)
Q Consensus 129 aPQ~L~~aL~n~Hq~FVaLAArla~LHE~V-e~lKE~YL~~rRr~GD~~DPFaEAdRrE~Arkraaa~RV~Pt~~lPAp 206 (408)
.|-||.+.+-++-..=+.|||||...|+.. ++.-..|++. -+...+||+-++.|.++-.||.|
T Consensus 287 ~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~e---------------vekK~eKl~EpPpvk~~KaLP~P 350 (492)
T KOG2574|consen 287 TPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAE---------------VEKKIEKLQEPPPVKQTKALPIP 350 (492)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHH---------------HHHHHHhhcCCCCCCcCCCCCCC
Confidence 578888888889899999999999999963 2333333333 22346788888999999999999
No 111
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=43.34 E-value=1.1e+02 Score=32.51 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
=.++|+.+++.+|+++|+.+..... .. .-+.+..-++.+.+..-.|..+++-|+..+++++..-....+
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~---~~----~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ 235 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELEL---NP----DDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQ 235 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc---cc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 3567777777777777777754321 11 134556666777776777777888888877777766554444
No 112
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.10 E-value=5.1e+02 Score=28.85 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHhhh
Q 015366 4 QKAQLQERMAVVKDMLRNTEIAVRSFM 30 (408)
Q Consensus 4 ~k~~lqeL~~~V~~mlrntE~AvRsf~ 30 (408)
..+-|++-...+++.|.++|.++..|.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788899999999999999887
No 113
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=43.08 E-value=2.4e+02 Score=27.11 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
.=++..||+.+.+|||.||- -+ -..+ +..++.++=.+|-.+-+.|+++|..=+..
T Consensus 107 DVvL~~FEk~~~eYkq~ieS---~~------------------cr~A---I~~F~~~~keqL~~~i~evq~lK~lkrkN 161 (175)
T PF13097_consen 107 DVVLSAFEKTALEYKQSIES---KI------------------CRKA---INKFYSNFKEQLIEMIKEVQELKNLKRKN 161 (175)
T ss_pred HHHHHHHHHHHHHHHHhhcc---HH------------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999987752 11 1333 44455555556777777777777654443
No 114
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=42.71 E-value=1.9e+02 Score=28.62 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV---HVAAKAESIHQYVETMKTAYLA 167 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FV---aLAArla~LHE~Ve~lKE~YL~ 167 (408)
.+.+++++.|+.....+...-..|..... +........++.+...+.++.|+-+ .+-.++...+++|+++.++|-.
T Consensus 9 ~t~~~i~~eL~~~~~l~~~yta~l~~~~~-~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~ 87 (281)
T PF12018_consen 9 ATTEHIDTELEEAQELCYRYTAVLEKQSQ-SPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEA 87 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677776666655554444432221 1111111224557777776666555 3467888899999999999988
Q ss_pred HHhh
Q 015366 168 DQRR 171 (408)
Q Consensus 168 ~rRr 171 (408)
....
T Consensus 88 ~l~~ 91 (281)
T PF12018_consen 88 QLEK 91 (281)
T ss_pred HHHH
Confidence 7664
No 115
>KOG3719 consensus Carnitine O-acyltransferase CPT2/YAT1 [Lipid transport and metabolism]
Probab=42.68 E-value=20 Score=39.52 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=40.4
Q ss_pred CCccchhhhccCCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcC
Q 015366 69 SSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFR--QWIEELEQLILLD 117 (408)
Q Consensus 69 ~~~~Pv~Dfys~~p~~PSpFF~elV~~FEerL~~yR--QqIEELEr~L~s~ 117 (408)
-+..|.+-|...+|++|-|=+.++++||-+.++-+- .|++.+|+.+..-
T Consensus 11 ~s~~pt~~~q~sLpRLPIPkL~DTl~Ryl~s~kpLl~p~q~~kt~~ti~sf 61 (638)
T KOG3719|consen 11 DSSGPTFHFQESLPRLPIPKLEDTLNRYLESLKPLLDPEQFRKTEQTIRSF 61 (638)
T ss_pred ccCCCceecccccccCCCCchhhHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999988876553 4777888877643
No 116
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.67 E-value=3.4e+02 Score=26.66 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELE 111 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELE 111 (408)
+++=|+.|.+|++.+++|+
T Consensus 27 ~e~ee~~L~e~~kE~~~L~ 45 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELL 45 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666554
No 117
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=42.66 E-value=1.8e+02 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
+-|.+.|+.-...|..++..|++|++.....
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~ 32 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQL 32 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999998877543
No 118
>PRK11637 AmiB activator; Provisional
Probab=42.66 E-value=1.6e+02 Score=30.29 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
.++...+..+.+-.-.+-.+++.+.+++++.++.+-...|
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555666666666666655544444
No 119
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=42.65 E-value=2.6e+02 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
.+...+++|...+.++..+|+++|+.+..
T Consensus 139 il~~ivd~~~~~l~~l~~~~~~le~~l~~ 167 (318)
T TIGR00383 139 IFDAIIDSYFPLLENIEDELEELEDEIIS 167 (318)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhc
Confidence 45667788999999999999999997743
No 120
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=41.77 E-value=1.4e+02 Score=30.67 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVI--SNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL--~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
+.=|+.|++|..+|.+|-+.++-. ...|..+| -.+|..|..|-..|+...+++++....
T Consensus 139 A~kEQEmqe~~sqi~~lK~qq~Ps------------~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Qne 199 (330)
T KOG2991|consen 139 ATKEQEMQECTSQIQYLKQQQQPS------------VAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNE 199 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcH------------HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445888999999999988776411 23344444 378999999999999999999887543
No 121
>PRK14155 heat shock protein GrpE; Provisional
Probab=41.53 E-value=1.3e+02 Score=29.04 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA-----AKAESIHQYVETMKT 163 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA-----Arla~LHE~Ve~lKE 163 (408)
|.++.++||+.-.+.++.++++-+.-.. ....+|-.++.++-...-+.. ..+..|.+.|+....
T Consensus 36 ~lR~~AefeN~RKR~~kE~e~~~~~a~~-----------~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k 104 (208)
T PRK14155 36 ALRYAAEAENTKRRAEREMNDARAYAIQ-----------KFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEK 104 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHH
Confidence 3455566666655555555554443311 124555556666655554432 236789999999999
Q ss_pred HHHHHHhhcC----C--CCCcchh
Q 015366 164 AYLADQRRRG----D--GSDPFLE 181 (408)
Q Consensus 164 ~YL~~rRr~G----D--~~DPFaE 181 (408)
.+++...+.| + ..++|+.
T Consensus 105 ~~~~~L~k~GV~~I~~~~G~~FDP 128 (208)
T PRK14155 105 ELLGAFERNGLKKIDPAKGDKFDP 128 (208)
T ss_pred HHHHHHHHCCCceecCCCCCCCCh
Confidence 9999988654 2 3577733
No 122
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=41.43 E-value=1.2e+02 Score=33.73 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=32.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 82 PKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 82 p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
..+|.-|+..+..-.|.-|+.||+.|-.||+.+...
T Consensus 84 ~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~ 119 (679)
T KOG2065|consen 84 DSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGN 119 (679)
T ss_pred CccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 367788999999999999999999999999998644
No 123
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.25 E-value=2.5e+02 Score=26.89 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
++.++++.++-+...+.|+.|++.+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655553
No 124
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=40.71 E-value=2.7e+02 Score=25.00 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKA-------------ESIHQYVET 160 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArl-------------a~LHE~Ve~ 160 (408)
.+|..+|.++.+.|..+=+-|...+. ..|++|...-.++-+-|-.||... ..|...|++
T Consensus 3 vdyQt~mv~~ak~ia~~a~emv~ks~--------~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~ 74 (125)
T PF08913_consen 3 VDYQTRMVEAAKEIARTAQEMVTKSR--------TNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQD 74 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 47889999999999999888865532 137788887777777777776543 256666777
Q ss_pred HHHHHHHHHh----hcCCCCCcchhh
Q 015366 161 MKTAYLADQR----RRGDGSDPFLEA 182 (408)
Q Consensus 161 lKE~YL~~rR----r~GD~~DPFaEA 182 (408)
+=+.=.++-+ ...|..|++...
T Consensus 75 LG~sc~~Lv~aag~~~~~P~d~~~k~ 100 (125)
T PF08913_consen 75 LGMSCIELVQAAGAVQSNPSDPYAKR 100 (125)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHhCcCCCCCCchhHHH
Confidence 7777777765 256777887544
No 125
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=40.15 E-value=38 Score=34.42 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L 114 (408)
+...++++.++|..|+|||||+|...
T Consensus 250 L~~I~~~Lk~qL~~C~~~I~~~E~y~ 275 (286)
T PF14576_consen 250 LSNILSHLKKQLDLCRQQIEEIEDYQ 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999988754
No 126
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.76 E-value=1.9e+02 Score=32.35 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=45.5
Q ss_pred ccchhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc---cchHHHHHHHHHHHHHH
Q 015366 71 VVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLL---QSLPQVISNVHIFFVHV 147 (408)
Q Consensus 71 ~~Pv~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaP---Q~L~~aL~n~Hq~FVaL 147 (408)
+.|+-.|.+... ..+|=++++.-|+.|..||...+|+-|.+...+. +...-+.. ..|..++.++-|.-..=
T Consensus 299 ld~~D~fW~~n~---~~pFP~VAE~Ve~eL~~Yk~~~~ei~r~~G~sg~---~e~~~~~~~Dtt~l~~aV~sLPEL~ekK 372 (621)
T KOG1301|consen 299 LDPNDKFWRRNK---GSPFPEVAENVEEELESYKNEEAEIKRKMGLSGE---DEGAIDELNDTTKLQSAVSSLPELTEKK 372 (621)
T ss_pred CCCccHHHHhcC---CCCCchHHHHHHHHHHHHHhhHHHHHhhcCCCcc---cccccccccchHHHHHHHHHhHHHHHhh
Confidence 445434444443 3345579999999999999999999996543332 11100111 14555555555543332
Q ss_pred HHHHHHHHHHH
Q 015366 148 AAKAESIHQYV 158 (408)
Q Consensus 148 AArla~LHE~V 158 (408)
|+-.+|..|
T Consensus 373 --~~ID~HtnI 381 (621)
T KOG1301|consen 373 --RLIDLHTNI 381 (621)
T ss_pred --hhHHHHHHH
Confidence 455566663
No 127
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=39.70 E-value=1e+02 Score=29.54 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhc
Q 015366 102 EFRQWIEELEQLILL 116 (408)
Q Consensus 102 ~yRQqIEELEr~L~s 116 (408)
..++-|+.++..+..
T Consensus 168 ~l~~~l~~l~~l~~~ 182 (291)
T TIGR00996 168 QLRNLLDGLAQLTAA 182 (291)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 128
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.67 E-value=2.8e+02 Score=28.10 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhh
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVRSFM 30 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvRsf~ 30 (408)
..-|++-...+++-|+..|.+++.|.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888889999999887
No 129
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=39.56 E-value=3.4e+02 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
-.++++|=..|+++..++|++|+.+...
T Consensus 146 d~i~d~~~~~le~i~~~~~~ie~~l~~~ 173 (322)
T COG0598 146 DAIVDNYFPVLEQIEDELEAIEDQLLAS 173 (322)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777788888889999999877544
No 130
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.95 E-value=1.6e+02 Score=32.47 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhh
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVRSFM 30 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvRsf~ 30 (408)
.+-|++-...+++.|+.+|.++..|+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667778888899999999887
No 131
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=38.90 E-value=2.7e+02 Score=32.81 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
++.+.+-|++..++|..||+.++..-..... =.-....|..+|+.=..--.+|-..|-+++++
T Consensus 896 ad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e------~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~l 958 (1102)
T KOG1924|consen 896 ADEIKKNLQQMENQIKKLERDLKNFKIAGNE------HDKFVEKMTSFHEKAREQYSKLSSMHGNMEKL 958 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc------hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888999999998754321111 11234455555555444444455555544443
No 132
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=38.49 E-value=2.9e+02 Score=24.59 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla 152 (408)
+-..|+++.+++++.+.||..++...++ . |.+=...+-.+|+.++.|.+-+-
T Consensus 31 lk~~f~~~~~~~~~~~~eL~~~v~~lGg-~--------p~~~gs~~g~lhr~w~~lks~~~ 82 (139)
T TIGR02284 31 LATLFRRIAGEKSAIVSELQQVVASLGG-K--------PEDHGSMVGSLHQFWGKIRATLT 82 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-C--------CCCCCcHHHHHHHHHHHHHHHHc
Confidence 3567889999999999999999987753 1 22334567889999998876553
No 133
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.42 E-value=2.1e+02 Score=34.07 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhhhcccccc
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFL 37 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvRsf~~lRprf~ 37 (408)
++.|+++++.|..+=+--|.|...+.++|..+.
T Consensus 322 ea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 322 EAKIGELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777776555
No 134
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.24 E-value=3.8e+02 Score=28.49 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=38.8
Q ss_pred hhhccCCCCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 015366 75 FDFYRGLPKKPSAFLQ---QTVARFEKYLGEFRQWIEELEQLILLDPD-RNSSSHGSSLLQSLPQVISNVHIFFVHVAAK 150 (408)
Q Consensus 75 ~Dfys~~p~~PSpFF~---elV~~FEerL~~yRQqIEELEr~L~s~s~-~~~S~itssaPQ~L~~aL~n~Hq~FVaLAAr 150 (408)
-|.=..-|.-++.... .++.-.+++|.+-++ ||+|+.....++ ++-+-.=...-+.|....+.+-+.-..|...
T Consensus 191 ~d~~~~yp~n~~~~~~irasvisa~~eklR~r~e--eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 191 DDNAEPYPPNASGKLVIRASVISAVREKLRRRRE--EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred CCCCCcCCCCcccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444555666666 666666666665444 355555433221 0000000001344444555555555555555
Q ss_pred HHHHHHHHHH
Q 015366 151 AESIHQYVET 160 (408)
Q Consensus 151 la~LHE~Ve~ 160 (408)
.+.|..++++
T Consensus 269 iDIL~~k~~e 278 (365)
T KOG2391|consen 269 IDILKSKVRE 278 (365)
T ss_pred hHHHHHHHHH
Confidence 5555555544
No 135
>PRK11519 tyrosine kinase; Provisional
Probab=38.17 E-value=1.3e+02 Score=33.43 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s 116 (408)
+++-+|+||.+.+++.++.|+.|..
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777776644
No 136
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=38.08 E-value=33 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.1
Q ss_pred ChhhHHHHHHHHHHHHHHhhc
Q 015366 1 MERQKAQLQERMAVVKDMLRN 21 (408)
Q Consensus 1 ~eR~k~~lqeL~~~V~~mlrn 21 (408)
|+|.|..|.+|.....++.||
T Consensus 3 ~~rlr~rI~dLer~L~~C~~n 23 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRRN 23 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 788999999999888888776
No 137
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=37.94 E-value=1.3e+02 Score=33.50 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCcc
Q 015366 155 HQYVETMKTAYLADQRRRG-DGSDPF 179 (408)
Q Consensus 155 HE~Ve~lKE~YL~~rRr~G-D~~DPF 179 (408)
|-=+.++||.--+ -+..| |+.+-=
T Consensus 220 hHv~tElKeii~n-K~YtG~~~~~n~ 244 (574)
T PF07462_consen 220 HHVFTELKEIIKN-KKYTGNDHAKNI 244 (574)
T ss_pred HHHHHHHHHHHhc-CCCCCCChhhhH
Confidence 3334455554333 23445 444433
No 138
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.88 E-value=1.2e+02 Score=32.97 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=10.2
Q ss_pred HHHHHhhc-cCCccccCCCC
Q 015366 188 ARQEAAAK-RVHPTLHLPVN 206 (408)
Q Consensus 188 Arkraaa~-RV~Pt~~lPAp 206 (408)
-++++... -+.|+.-++.+
T Consensus 174 v~df~~~qsg~~p~c~ltp~ 193 (487)
T KOG2724|consen 174 VEDFQAAQSGVAPTCKLTPP 193 (487)
T ss_pred hhhhhhhhcCcccccccCcc
Confidence 34555443 36666666555
No 139
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.82 E-value=56 Score=35.42 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=4.1
Q ss_pred eecCCeee
Q 015366 335 LQSNGHFI 342 (408)
Q Consensus 335 ~~~~~~~~ 342 (408)
...||+.|
T Consensus 288 C~~~G~vi 295 (475)
T PRK13729 288 CLKNGKTI 295 (475)
T ss_pred ecCCCcEE
Confidence 34466554
No 140
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=36.45 E-value=3.3e+02 Score=24.66 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 82 PKKPSAFLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 82 p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
.++=+..+.++..+|.+.|..|-+.|..=+..|
T Consensus 22 eklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L 54 (131)
T PF10158_consen 22 EKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNAL 54 (131)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688899999999999999999887766666
No 141
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=36.34 E-value=39 Score=26.15 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
-+++-.+..|+++...-++|+|||+.=
T Consensus 9 lLqe~~d~IEqkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 9 LLQEHYDNIEQKIEDIDEQIAELEAKR 35 (46)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHH
Confidence 356667889999999999999999753
No 142
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=36.08 E-value=1.4e+02 Score=32.20 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV------AAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL------AArla~LHE~Ve~lKE~YL 166 (408)
+.+-..++.+|.+-|+..+..|.... .++..+..+|+++++..|+. ....+.|.++++.++++.+
T Consensus 52 l~~~~~~l~qy~~Ni~~a~~~L~~~e---------saL~~i~~~lqr~rel~vqa~ngt~s~~dr~aia~El~~l~~~l~ 122 (523)
T PRK12717 52 LQQQQAMLDQYSGNITTIKNSLTQEE---------STLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLL 122 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777775442 35888999999999988865 4677789999999999998
Q ss_pred HHHh
Q 015366 167 ADQR 170 (408)
Q Consensus 167 ~~rR 170 (408)
..--
T Consensus 123 ~~aN 126 (523)
T PRK12717 123 GLMN 126 (523)
T ss_pred HHHh
Confidence 8854
No 143
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.00 E-value=61 Score=32.13 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s~s 118 (408)
||-|.|-=-|+-|+....+|+|||+.++...
T Consensus 45 ~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq 75 (233)
T COG3416 45 YLAQRVLIQEQALKKASTQIKELEKRIAILQ 75 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999997653
No 144
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.73 E-value=1.4e+02 Score=32.34 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=58.2
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 015366 78 YRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD-------RNSSSHGSSLLQSLPQVISNVHIFFVHVAAK 150 (408)
Q Consensus 78 ys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~-------~~~S~itssaPQ~L~~aL~n~Hq~FVaLAAr 150 (408)
+-+.+.-=-|++.+-+.+.++++.+|++.++|+.+....... ..+= .+.+.-.+|...+..+=..|-.++..
T Consensus 118 L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI-~G~nir~ELl~l~~~LP~~~~~i~~~ 196 (507)
T PF05600_consen 118 LVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGI-KGENIREELLELVKELPSLFDEIVEA 196 (507)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC-ccchhHHHHHHHHHhhHHHHHHHHHH
Confidence 444455566788888888888888888888887775532221 0110 01134567777788888888887666
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 015366 151 AESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 151 la~LHE~Ve~lKE~YL~~rRr 171 (408)
+ ..+++.-|-|.+.++.
T Consensus 197 i----~~l~~aie~Y~~f~~~ 213 (507)
T PF05600_consen 197 I----SDLQEAIEYYQAFVEF 213 (507)
T ss_pred H----HHHHHHHHHHHHHHHH
Confidence 6 3377777888888774
No 145
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=35.52 E-value=1.6e+02 Score=37.11 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHhhchHHHHHh
Q 015366 2 ERQKAQLQERMAVVKDMLRNTEIAVRS 28 (408)
Q Consensus 2 eR~k~~lqeL~~~V~~mlrntE~AvRs 28 (408)
||.|-.|+....+...+|.+.|.|.-.
T Consensus 1771 e~~k~~LE~~~kdLq~rL~e~E~~a~~ 1797 (1930)
T KOG0161|consen 1771 ERLKKSLERQVKDLQLRLDEAEQAALK 1797 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567777777777777777777776543
No 146
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.15 E-value=98 Score=37.28 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=7.6
Q ss_pred cccccCCCCC
Q 015366 311 ASLFSTPFAS 320 (408)
Q Consensus 311 ~slFstp~~~ 320 (408)
.++|++|.-|
T Consensus 553 a~~f~~pl~g 562 (1405)
T KOG3630|consen 553 ASAFGKPLFG 562 (1405)
T ss_pred cccccCccce
Confidence 6788888766
No 147
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=35.04 E-value=1.6e+02 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=17.4
Q ss_pred CccchhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 70 SVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQL 113 (408)
Q Consensus 70 ~~~Pv~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~ 113 (408)
.+.|+.|.|.+. .+|-++|+..-++++.|-..
T Consensus 121 ~i~~~~~~~~~~------------~~Y~eqm~~aa~~l~~LN~~ 152 (202)
T TIGR03513 121 TLAPMTDSYAQQ------------KKYIEQMSSLAANMEGLNTI 152 (202)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 345677766644 25555555555555554443
No 148
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.91 E-value=1.2e+02 Score=26.23 Aligned_cols=38 Identities=5% Similarity=0.188 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 015366 133 LPQVISNVHIFFVHVAAKAESIHQYVETMKT--AYLADQR 170 (408)
Q Consensus 133 L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE--~YL~~rR 170 (408)
+..-++.+++-.-.+-.+-+.|.++|+.+|+ .|++.+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3334444444444555566667777777765 4666544
No 149
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.78 E-value=2.9e+02 Score=26.92 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 100 LGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 100 L~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
..-++.||.++|++|.... .|..+ ...+-+-...|-- -...|+.....+..|..+++
T Consensus 26 ts~iK~qiRd~eRlLkk~~----------LP~~V---r~e~er~L~~Lk~-ql~~~~l~~k~rkif~ryrk 82 (199)
T KOG4484|consen 26 TSSIKNQIRDLERLLKKKD----------LPPEV---REELERKLQDLKK-QLDNHELLAKERKIFKRYRK 82 (199)
T ss_pred hHHHHHHHHHHHHHHhhcc----------CCHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999997532 13222 2222222223311 22567777777888888877
No 150
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.70 E-value=22 Score=30.99 Aligned_cols=15 Identities=40% Similarity=0.946 Sum_probs=11.1
Q ss_pred chhhHHHHHHHHHHh
Q 015366 350 NWQFFFLFIVFFFLF 364 (408)
Q Consensus 350 ~~~~~~~~~~~~~~~ 364 (408)
.|-+|.+|||++||+
T Consensus 1 RW~l~~iii~~i~l~ 15 (130)
T PF12273_consen 1 RWVLFAIIIVAILLF 15 (130)
T ss_pred CeeeHHHHHHHHHHH
Confidence 388888887776665
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.65 E-value=3.3e+02 Score=30.87 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEF 103 (408)
Q Consensus 89 F~elV~~FEerL~~y 103 (408)
....-+.+++|+...
T Consensus 556 ~~~ar~ei~~rv~~L 570 (717)
T PF10168_consen 556 QDLAREEIQRRVKLL 570 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555554433
No 152
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=34.53 E-value=2.1e+02 Score=27.36 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
+++|+++|+++.+-+..|+|...-|+.
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~ 92 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQ 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999988888888777753
No 153
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.51 E-value=2e+02 Score=35.14 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQ 105 (408)
Q Consensus 93 V~~FEerL~~yRQ 105 (408)
+.++|++|++.|.
T Consensus 1203 f~~me~kl~~ir~ 1215 (1758)
T KOG0994|consen 1203 FLDMEEKLEEIRA 1215 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777665
No 154
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=34.47 E-value=88 Score=32.17 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L 114 (408)
.-+||+-+.+++.+|+||++.-
T Consensus 5 ~l~fe~~i~~l~~~i~~l~~~~ 26 (319)
T PRK05724 5 YLDFEKPIAELEAKIEELRAVA 26 (319)
T ss_pred hhhhhhHHHHHHHHHHHHHhhh
Confidence 3489999999999999998753
No 155
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=34.45 E-value=3.1e+02 Score=32.84 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCCCCCCCCC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQ-------LILLDPDRNSSSH-GSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE 159 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr-------~L~s~s~~~~S~i-tssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve 159 (408)
-+.+-.++++++.++|+++|++-.+ .+..... ..... ...+..+|...+.....-...+..+++...+++.
T Consensus 55 ~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~-~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~ 133 (1109)
T PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD-EPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAR 133 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc-ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344456666677777766655443 3332211 11111 1122455666555555555555556665555553
Q ss_pred H
Q 015366 160 T 160 (408)
Q Consensus 160 ~ 160 (408)
+
T Consensus 134 ~ 134 (1109)
T PRK10929 134 E 134 (1109)
T ss_pred H
Confidence 3
No 156
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.39 E-value=4e+02 Score=28.25 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=19.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+.++...+..+.+-.-.+-.++..+.++++++++..-.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444444444444455555554444433
No 157
>PRK10807 paraquat-inducible protein B; Provisional
Probab=34.36 E-value=1.2e+02 Score=32.97 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVH 146 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVa 146 (408)
+.+++++.+.-|...++.++++++.+.....--.+......+++|..+|+++....-.
T Consensus 434 le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~ 491 (547)
T PRK10807 434 LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQG 491 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666666667777777777776643211000100112345555555555554443
No 158
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.32 E-value=1.8e+02 Score=31.76 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
+-+++.|+++..+.++|++||..|.
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466788888888888888888874
No 159
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.26 E-value=4.3e+02 Score=29.42 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=28.7
Q ss_pred ccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 130 LQSLPQVISN---VHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 130 PQ~L~~aL~n---~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+.+|..-..+ -.+.......+++.|++++++++++|+...+.
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~ 364 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEA 364 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455443333 33344555667889999999999999998774
No 160
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=34.21 E-value=2.6e+02 Score=22.90 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSL-PQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 83 ~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L-~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
.-|.++|.++...+.+-+...+.-.+|+|+.+...-.+.-+. ..-+ ..-.+.+.+.....-.|++.|..+|..+
T Consensus 2 ~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~k-----ldlVtREEFd~q~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 2 QDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSK-----LDLVTREEFDAQKAVLARTREKLEALEARLAAL 76 (79)
T ss_pred CCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999998888899999885331100000 0000 2344445555555555556665555554
No 161
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.13 E-value=1.7e+02 Score=29.54 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCcc
Q 015366 106 WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR---RGDGSDPF 179 (408)
Q Consensus 106 qIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr---~GD~~DPF 179 (408)
.|+++|++|... .+.+..-+++..+....|++.-+.|.++|++-|..+=..++| +-..+=.|
T Consensus 159 e~~~iE~~l~~a------------i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAf 223 (267)
T PF10234_consen 159 ELNEIEKALKEA------------IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAF 223 (267)
T ss_pred CHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 456666666422 456666777777778888888888888888777776666554 33444444
No 162
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.63 E-value=2.2e+02 Score=27.05 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 137 ISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 137 L~n~Hq~FVaLAArla~LHE~Ve~lKE~YL 166 (408)
++....-...+-+.++.|.+.+++++-.|-
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555566666666655553
No 163
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=33.60 E-value=3.4e+02 Score=29.08 Aligned_cols=58 Identities=26% Similarity=0.207 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHh
Q 015366 136 VISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAA 193 (408)
Q Consensus 136 aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~GD~~DPFaEAdRrE~Arkraa 193 (408)
=+-..-|+.+.||+|==.+...|+..-..--....++-+.+||=+-+-|+..+++=+.
T Consensus 131 WllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~NdP~l~~~R~Aia~Dia~ 188 (391)
T COG2959 131 WLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAMNDPSLIAVRRAIANDIAA 188 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 4556668888888876666666666555544555567778888877777766665443
No 164
>PRK04325 hypothetical protein; Provisional
Probab=33.50 E-value=82 Score=25.68 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L 114 (408)
+.+.|.++..-...||+|-..|
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv 32 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATV 32 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 165
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.50 E-value=1.9e+02 Score=28.80 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 93 VARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s 116 (408)
.+-.|+++.++++..++.|+-|..
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777766644
No 166
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=33.24 E-value=2e+02 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 015366 87 AFLQQTVARFEKY---LGEFRQWIEELEQLIL 115 (408)
Q Consensus 87 pFF~elV~~FEer---L~~yRQqIEELEr~L~ 115 (408)
+-+.++++.||.. ++.||.+++|||.+|-
T Consensus 98 ~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~l~ 129 (179)
T PF14723_consen 98 ELYSCTVQELQQMRRSLNSFREQMMDLELHLM 129 (179)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344678888764 6788999999999993
No 167
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=33.22 E-value=1.4e+02 Score=29.43 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY 157 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~ 157 (408)
+++.+++.++..++.-|+++..+....++ +-.+|..++++.-...-.|+.+=+.|++-
T Consensus 42 ~~l~~ln~~~~~l~~~l~~l~~v~~~~a~---------aapdL~~~l~~~~~~s~tL~~~~~~L~~l 99 (267)
T PF11887_consen 42 TLLATLNPRLPQLREDLRNLADVADTYAD---------AAPDLLDALDNLTTTSRTLVDQRQQLDAL 99 (267)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33555555666666666666666555433 12455555555555555554444444443
No 168
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=33.04 E-value=59 Score=33.33 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015366 94 ARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L 114 (408)
-+||+.+.+++.+|+||++.-
T Consensus 6 ~~fe~~i~~l~~~~~~l~~~~ 26 (316)
T TIGR00513 6 LDFEKPIAELEAKIESLRARS 26 (316)
T ss_pred hhhhHHHHHHHHHHHHHHhhh
Confidence 379999999999999998864
No 169
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.79 E-value=2.1e+02 Score=27.07 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015366 150 KAESIHQYVETMKTAYLA 167 (408)
Q Consensus 150 rla~LHE~Ve~lKE~YL~ 167 (408)
+++.+.++++++|+.||.
T Consensus 27 ei~~l~~e~~elkd~~lR 44 (178)
T PRK14161 27 EITALKAEIEELKDKLIR 44 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 170
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=32.72 E-value=5e+02 Score=25.66 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HhhcC---CCCCc-chhh
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETM---KTAYLAD-QRRRG---DGSDP-FLEA 182 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l---KE~YL~~-rRr~G---D~~DP-FaEA 182 (408)
+.|...|.++-+..-.+=+++..-..+.... |+.-++. |++.| |.+|| |.|+
T Consensus 124 k~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~em 183 (217)
T PF10147_consen 124 KEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEM 183 (217)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHH
Confidence 5566666666666665555555554443322 3444444 44566 77777 6555
No 171
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.56 E-value=3.4e+02 Score=26.64 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+.+|++.+.+.++.+-+|.+|. ..+.+-++.|++-=.+++.|++++++.-..-.+.||.
T Consensus 31 ~~i~~~~ekLs~~ldvVe~~L~-------------------~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~ 89 (291)
T PF10475_consen 31 EDIEELQEKLSHYLDVVEKKLS-------------------REISEKSDSFFQAMSSVQELQDELEEALVICKNLRRN 89 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666663 2233344444444466666666666666666666664
No 172
>PLN03181 glycosyltransferase; Provisional
Probab=32.44 E-value=48 Score=35.73 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
.-|..++|++||+=|+.|+ |+|+.... |++= ..|.+||+...++|+|
T Consensus 325 ~GyW~~iv~~~e~~~~~y~----~~er~~~~--------------------lrrr---------hae~~~~~y~~~re~~ 371 (453)
T PLN03181 325 EGYWAEIVGRLDNITERYL----EMEREDAT--------------------LRRR---------HAEKVSERYAAFREEA 371 (453)
T ss_pred eeeHHHHHhHHHHHHHHHH----Hhhhcchh--------------------hhhh---------hhhhhhhhhhhhhhhh
Confidence 3478899999999999886 66773322 2222 2467889999999999
Q ss_pred HHH
Q 015366 166 LAD 168 (408)
Q Consensus 166 L~~ 168 (408)
|..
T Consensus 372 ~~~ 374 (453)
T PLN03181 372 LKG 374 (453)
T ss_pred hcc
Confidence 984
No 173
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=32.34 E-value=1.9e+02 Score=22.27 Aligned_cols=30 Identities=30% Similarity=0.302 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
..||.+.-..+++-+...+.-|+++|.+..
T Consensus 19 ~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~ 48 (77)
T PF03993_consen 19 KEFFEEQDAEREENLEKKEALIEEAEALAE 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777788888888888888888887774
No 174
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.31 E-value=1.6e+02 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
|.-|++=..+.+.|.++++++-... .+|...+..+...-....+|++.+..+-.++-..+|...+
T Consensus 29 i~GF~dL~~R~~~Q~~~~~~~~~~l-------------~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 29 IIGFEDLKKRVEAQEEEIAQHRERL-------------KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp -----------------HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555554322 3344445555555666677888877777777777766654
No 175
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.28 E-value=3.2e+02 Score=23.26 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CC--CCC--CCCccc--c--------------------cchHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDP---DR--NSS--SHGSSL--L--------------------QSLPQVI 137 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s---~~--~~S--~itssa--P--------------------Q~L~~aL 137 (408)
+.|++-++.+..++.+++..|++++..+.... .. ... ++|+.. + -++..+.
T Consensus 9 ~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~ 88 (126)
T TIGR00293 9 QILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAI 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHH
Confidence 34566677777777777777777777663321 11 100 222111 1 3455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 138 SNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 138 ~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+-+.+---.+-..+..|.+.++++++++...+.
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666666666666555543
No 176
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=31.96 E-value=1.8e+02 Score=32.17 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
.+|+++ -.+..+++.++.+.++++++-+
T Consensus 355 ~~~~~~-~~~~~~~i~~~e~~vd~~~~~I 382 (533)
T COG1283 355 YEYIEG-DAKKVKEIRKLEDAVDRLYEEI 382 (533)
T ss_pred HHHHhc-chHHHHHHHHHHHHHHHHHHHH
Confidence 344444 4444444445555555554444
No 177
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.91 E-value=50 Score=28.97 Aligned_cols=39 Identities=5% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 015366 141 HIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF 179 (408)
Q Consensus 141 Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~GD~~DPF 179 (408)
..-+..+=+++...++.+..+++.|-..+++..+..++|
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344455556667777777777777777777544444444
No 178
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=31.89 E-value=2.8e+02 Score=24.29 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAYL 166 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA--Arla~LHE~Ve~lKE~YL 166 (408)
+.++.++||+.-.+.++.++++...... ....+|-.++.++-...-+.- ..+..+.+.++.+.+.++
T Consensus 8 ~~r~~ae~~N~rkr~~~e~~~~~~~~~~-----------~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l~ 76 (137)
T cd00446 8 LLRALAEFENYRKRTEREREEARKYAIE-----------KFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQLL 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776554311 123444444444444433322 245678888999999999
Q ss_pred HHHhhcC-----CCCCcchh
Q 015366 167 ADQRRRG-----DGSDPFLE 181 (408)
Q Consensus 167 ~~rRr~G-----D~~DPFaE 181 (408)
+...+.| ...+||+.
T Consensus 77 ~~L~~~Gv~~i~~~g~~FDp 96 (137)
T cd00446 77 DVLEKHGVEKIEPEGEPFDP 96 (137)
T ss_pred HHHHHCCCEEECCCCCCCCH
Confidence 8877533 34468843
No 179
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=31.87 E-value=68 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcc----cccchHHHHHHHH
Q 015366 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSS----LLQSLPQVISNVH 141 (408)
Q Consensus 99 rL~~yRQqIEELEr~L~s~s~~~~S~itss----aPQ~L~~aL~n~H 141 (408)
+|....|++|+||.+|....+..-++..++ .|-||..=++.+-
T Consensus 15 dmadVAQkLEqLE~vmg~~~~d~ls~lasDTVhyNPSDLs~WvesML 61 (73)
T PF12041_consen 15 DMADVAQKLEQLEMVMGNAQEDGLSQLASDTVHYNPSDLSSWVESML 61 (73)
T ss_dssp GHHHHHHHHHHHHHHHTT---------HCCHCCS-TTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccchHHHhhhhhhccChHHHHHHHHHHH
Confidence 588899999999999953322112222222 4778877666553
No 180
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.86 E-value=1.9e+02 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 136 VISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 136 aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
.+..+..-.-.+...++.|.+.|+++=+.|
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555566667777777776666655
No 181
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.68 E-value=3e+02 Score=29.38 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 015366 136 VISNVHIFFVHVAAKA 151 (408)
Q Consensus 136 aL~n~Hq~FVaLAArl 151 (408)
.+...|+-+.+|..++
T Consensus 252 ~i~~a~~~i~~L~~~l 267 (582)
T PF09731_consen 252 LIAHAKERIDALQKEL 267 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 182
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=31.64 E-value=2.2e+02 Score=23.76 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh-------hcCCCCCcc
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQY---VETMKTAYLADQR-------RRGDGSDPF 179 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~---Ve~lKE~YL~~rR-------r~GD~~DPF 179 (408)
+-|-.-++++++...-|=-.+++|..+ ++.+-+.+-+|+| ..|+..||+
T Consensus 14 sRIi~NvekLNEsv~~lN~~l~eIn~~N~~le~~~qm~enY~~nv~fnLe~t~~~~~P~ 72 (72)
T PF08650_consen 14 SRIIGNVEKLNESVAELNQELEEINRANKNLEIVAQMWENYQRNVQFNLEATGNKKEPL 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 334556778888888888888888766 5555666666655 388888886
No 183
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=31.62 E-value=2.3e+02 Score=29.45 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV----------HVAAKAESIHQYVETMKT 163 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FV----------aLAArla~LHE~Ve~lKE 163 (408)
++|++....|++.+++||+.+...-...=... .++++.-..+.++...+. ....=++.++++|+.+|+
T Consensus 294 ~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~~~--~s~~~~~~ll~~f~~L~~Rp~I~~~l~~~~~~ll~~~~~ei~~~~~ 371 (579)
T PF08385_consen 294 EEWERDFSEFRERIEDLERRLANILRQAFDDC--SSPEEAFRLLQKFKSLLNRPRIRKALQEKYEQLLQQFKEEIDQLKK 371 (579)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CCHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999998843210000000 113333333333322211 111225667777888888
Q ss_pred HHHHHHh
Q 015366 164 AYLADQR 170 (408)
Q Consensus 164 ~YL~~rR 170 (408)
.|.+.+.
T Consensus 372 ~f~~~~~ 378 (579)
T PF08385_consen 372 IFDNQKE 378 (579)
T ss_pred HHHhccc
Confidence 8887763
No 184
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.54 E-value=3.3e+02 Score=25.63 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 015366 93 VARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~ 115 (408)
+.+-++++...+..|+++.+.+.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~ 87 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIE 87 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666554
No 185
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=31.52 E-value=2.1e+02 Score=28.67 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV------AAKAESIHQYVETMKTAYLA 167 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL------AArla~LHE~Ve~lKE~YL~ 167 (408)
++...++.+|++-|...+..|.... ..++.+...|+++.+.-|+. +...+.|.++++.++++.+.
T Consensus 53 ~~~~~~~~qy~~n~~~a~~~l~~~e---------~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~aia~Ei~~l~~~l~~ 123 (317)
T PRK08027 53 SQAQAQNSQYTLARTFATQKVSLEE---------SVLSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLN 123 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888888888887776541 34788899999999988865 34667888889999998888
Q ss_pred HHhh-cCCCCCcc
Q 015366 168 DQRR-RGDGSDPF 179 (408)
Q Consensus 168 ~rRr-~GD~~DPF 179 (408)
.--. .++.+=.|
T Consensus 124 ~aNt~~~nG~ylF 136 (317)
T PRK08027 124 LANTTDGNGRYIF 136 (317)
T ss_pred HHcccCCCCCccc
Confidence 7542 23444444
No 186
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=31.50 E-value=2.1e+02 Score=26.80 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA---KAESIHQYVETM 161 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAA---rla~LHE~Ve~l 161 (408)
..|..+...|++||+.+--... ... ..+..+...|.+++......++ ++..+..+++++
T Consensus 5 ~~l~~Le~Ri~~LE~~v~G~~~-~~~----~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL 66 (174)
T PF07426_consen 5 SALDILEKRIEELERRVYGENG-SKE----GQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEEL 66 (174)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccc----CCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3466677778999999942211 111 1255666677777776666654 344444445555
No 187
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.41 E-value=1.5e+02 Score=26.76 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
.+.++..-++|.+.-.-|...-+||.. -.+.|-..|+.+.+.=-.+..+|..+++.++.++..--..
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLsq------------RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLSQ------------RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555555555555555531 1344555555555555555555555555555555444333
No 188
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=31.18 E-value=3.3e+02 Score=23.17 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE 163 (408)
..+-...|++.+...+..++++...-........ .....|...+..++.-.-.|...++..+..++..-+
T Consensus 38 ~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-----~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~ 107 (213)
T cd00176 38 LLKKHEALEAELAAHEERVEALNELGEQLIEEGH-----PDAEEIQERLEELNQRWEELRELAEERRQRLEEALD 107 (213)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777765433322111 125678888888888888887777777766666533
No 189
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.13 E-value=1.5e+02 Score=30.13 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHG-SSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~it-ssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
++.|-++....|..|+.|++.+......++...+ ...-+.+...|++..+.|...|-++. .+++.+.+...+.++
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik---~kL~~~e~~~~~~~~ 110 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIK---TKLKALEKENEADET 110 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccc
Confidence 4555566677777777777766332211111000 02357788899999999998876654 445555555544443
No 190
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=31.03 E-value=82 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcCCCCCcc
Q 015366 151 AESIHQYVETMKTAYLADQ--RRRGDGSDPF 179 (408)
Q Consensus 151 la~LHE~Ve~lKE~YL~~r--Rr~GD~~DPF 179 (408)
.++|++++.++|+.+.++| +..|...||-
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~~~~ 37 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLAKPH 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 5789999999999999998 4577776764
No 191
>PRK14150 heat shock protein GrpE; Provisional
Probab=30.98 E-value=2.6e+02 Score=26.66 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV---AAKAESIHQYVETMKTA 164 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL---AArla~LHE~Ve~lKE~ 164 (408)
.|.++.++||+.=.+.++.++++...-.. ....+|-.++.++...+-+. ...+..|++.|+.....
T Consensus 60 ~~lR~~AefeN~rkR~~kE~~~~~~~a~~-----------~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~ 128 (193)
T PRK14150 60 SVLRARAEVENIRRRAEQDVEKAHKFALE-----------KFANELLPVIDNLERALQAADKENEALKALIEGVELTLKS 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 34556777777776666666666554421 12456666777776666432 23467899999999999
Q ss_pred HHHHHhhcC-----CCCCcc
Q 015366 165 YLADQRRRG-----DGSDPF 179 (408)
Q Consensus 165 YL~~rRr~G-----D~~DPF 179 (408)
+++...++| -..+||
T Consensus 129 l~~~L~~~Gv~~i~~~G~~F 148 (193)
T PRK14150 129 LLDTVAKFGVEVVGPVGEPF 148 (193)
T ss_pred HHHHHHHCCCeeeCCCCCCC
Confidence 999888654 235777
No 192
>PRK00295 hypothetical protein; Provisional
Probab=30.93 E-value=98 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L 114 (408)
+.+.|.++..-...||+|-..|
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v 28 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555
No 193
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=30.92 E-value=2e+02 Score=32.80 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
+.+-+++.|++++.++++|+.+|+.|...+ .-.-+|+++ ++.-.+-...+-++++.|.+.++.+|
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~------F~~KAP~~v---ve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEG------FVAKAPEEV---VEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hhhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556678888888888888888888885321 111245444 33334444455556666666666654
No 194
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.86 E-value=2.4e+02 Score=27.25 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcc
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRG-----DGSDPF 179 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~G-----D~~DPF 179 (408)
..+|-.++.++-...-+ ......|++.|+.....+++...+.| ...+||
T Consensus 98 ~~~LLpV~DnLerAl~~-~~~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~F 151 (196)
T PRK14145 98 ILELLPVMDNFERALAS-SGDYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIF 151 (196)
T ss_pred HHHHHhHHhHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 44455556666555543 34567788999999999999988644 234677
No 195
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=30.71 E-value=74 Score=23.43 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQL 113 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~ 113 (408)
+.-|+|++|.+...-|++|.+.
T Consensus 16 LL~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 16 LLVRIEKKLDELTESINELSEA 37 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999998764
No 196
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=30.65 E-value=61 Score=37.02 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=29.9
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 75 FDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 75 ~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
...|..+...|-|+|. +||+-+.++..+|+||.+.-
T Consensus 82 ~~~~~~~~~~~~~~~l----dfEkpi~ele~ki~el~~~~ 117 (762)
T PLN03229 82 LSHFKPLKEKPKPVTL----DFEKPLVDLEKKIVDVRKMA 117 (762)
T ss_pred hhccCCCCCCCCCCCc----chhhHHHHHHHHHHHHHhhh
Confidence 3457778888999875 49999999999999998753
No 197
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=6.3e+02 Score=26.17 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHh
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAA 193 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~GD~~DPFaEAdRrE~Arkraa 193 (408)
+++..+++++.+-++..+++ .....=.+-+++|-...|. -|+||.|++.+++.
T Consensus 127 ~~~~~a~~r~q~~e~~~~~q--kRrreK~e~~eaRqRV~~~--------Ie~DKaeRka~~e~ 179 (290)
T KOG2689|consen 127 DEMSAAKRRLQDDEMRRAAQ--KRRREKAEDEEARQRVLRQ--------IERDKAERKAKYEN 179 (290)
T ss_pred cHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHH--------HHHhHHHHHHHhcc
Confidence 78899999999999987432 2222112233333333331 26678887777775
No 198
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.55 E-value=2.9e+02 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.312 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 141 HIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 141 Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
++=.+.+=.++..||++++++|+.
T Consensus 63 ~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 63 VKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666666654
No 199
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=30.51 E-value=3e+02 Score=25.59 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+....-|..++...-+....+..++..|++..+.+.+.+++
T Consensus 67 ~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~ 107 (148)
T COG2882 67 QNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIE 107 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666677777888888888888888877663
No 200
>PRK11637 AmiB activator; Provisional
Probab=30.40 E-value=5.1e+02 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 015366 95 RFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L 114 (408)
.-++++.+.+++|+++++-+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i 63 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSV 63 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 201
>TIGR02550 flagell_flgL flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC.
Probab=30.28 E-value=2.2e+02 Score=27.43 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYLA 167 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAA------rla~LHE~Ve~lKE~YL~ 167 (408)
++=..++.+|.+-|++....|.... .++..+...|.++.+..+..+. ..+.+.++++.++++.+.
T Consensus 52 ~~~~~~~~~~~~n~~~~~~~l~~~~---------~~L~~i~~~l~~~~~~~v~a~ngt~~~~~~~~ia~e~~~l~~~i~~ 122 (306)
T TIGR02550 52 NQELAQLEQYQKNIDDAKNWLSQTE---------TALSSVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVN 122 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777778777775442 3488899999999998887654 677888999999998888
Q ss_pred HHhhc-CCCCCcc
Q 015366 168 DQRRR-GDGSDPF 179 (408)
Q Consensus 168 ~rRr~-GD~~DPF 179 (408)
.-... -+.+-.|
T Consensus 123 ~~Nt~~~~G~ylF 135 (306)
T TIGR02550 123 LANTKDGNGRYIF 135 (306)
T ss_pred HHCCCCCCCceee
Confidence 76543 4455556
No 202
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=30.23 E-value=2.6e+02 Score=35.69 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE----------TMKTAYLA 167 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve----------~lKE~YL~ 167 (408)
+.++..++|+++||..|++... +...+ +..+|-+..+.+-.-..-.+.+|+.|..... ++.+.=++
T Consensus 1382 qs~~D~~~~l~~le~qL~S~D~--G~DL~--Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~~~ 1457 (2473)
T KOG0517|consen 1382 QSLADAKKKLDELESQLQSDDT--GKDLT--SVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETTLA 1457 (2473)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--CcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHHHH
Confidence 3444556677777777765432 32222 2333333333333344445555655544433 33444455
Q ss_pred HHhhcCCCCCcchhhhHHHHHHHHHhh
Q 015366 168 DQRRRGDGSDPFLEADRRETARQEAAA 194 (408)
Q Consensus 168 ~rRr~GD~~DPFaEAdRrE~Arkraaa 194 (408)
..+|.-+-.+|-.+..+.-.+.++.+.
T Consensus 1458 v~~Rf~~L~~Pl~~R~~~Le~S~e~hQ 1484 (2473)
T KOG0517|consen 1458 VLERFEDLLGPLQERRKQLEASKELHQ 1484 (2473)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555666667788788777777777664
No 203
>PRK14154 heat shock protein GrpE; Provisional
Probab=30.22 E-value=2.8e+02 Score=27.03 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC----CC--CCcch
Q 015366 130 LQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTAYLADQRRRG----DG--SDPFL 180 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLA---Arla~LHE~Ve~lKE~YL~~rRr~G----D~--~DPFa 180 (408)
..+|=.++.++-...-+.. ..+..|.+.|+...+.+++...+.| |. .+||+
T Consensus 105 ~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~FD 164 (208)
T PRK14154 105 ITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFD 164 (208)
T ss_pred HHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCC
Confidence 3444445555555543322 2467889999999999999988655 43 58883
No 204
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.18 E-value=5.1e+02 Score=24.96 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+.+....+.++.+-...+-.+++.+.++.-.++..|=|+|||
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR 76 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKR 76 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777666666666666666666666677777776
No 205
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.13 E-value=3e+02 Score=30.72 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHhh-cCC--CCCCCCCCcccccchHHHHH----HHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGE-------FRQWIEELEQLIL-LDP--DRNSSSHGSSLLQSLPQVIS----NVHIFFVHVAAKAESIH 155 (408)
Q Consensus 90 ~elV~~FEerL~~-------yRQqIEELEr~L~-s~s--~~~~S~itssaPQ~L~~aL~----n~Hq~FVaLAArla~LH 155 (408)
+..+++.+.+.+. .+-++|.||..+. ..+ +..+-.++ ..+.=..++. .-.++++.||..-+.+.
T Consensus 413 q~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~--ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk 490 (617)
T PF15070_consen 413 QEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYIT--LYQSQRAVLKQRHQEKEEYISRLAQDREEMK 490 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhc--cccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4445566655554 3457788887553 222 22333332 1222222333 23457889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhh
Q 015366 156 QYVETMKTAYLADQRRRGDGSDPFLEA 182 (408)
Q Consensus 156 E~Ve~lKE~YL~~rRr~GD~~DPFaEA 182 (408)
.++.++++.-+.+...+++.-..|.++
T Consensus 491 ~kl~elq~lv~~l~~~~~e~~~k~l~a 517 (617)
T PF15070_consen 491 VKLLELQELVLRLVGDHNEWHSKFLAA 517 (617)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 999999998887766555555666554
No 206
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=30.09 E-value=3.1e+02 Score=26.99 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF-VHVAAKAES-IHQYVETMKTA 164 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~F-VaLAArla~-LHE~Ve~lKE~ 164 (408)
.=+.++++.-|.--.+-++-.|+|+..+...-. ...++. ..+.+.|+-+ -.|-.+... .-+.|+++|..
T Consensus 65 ~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~--------~l~~~~-~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~ 135 (234)
T cd07686 65 KSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLT--------MMIKDK-QQVKKSYIGVHQQIEAEMYKVTKTELEKLKCS 135 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346777888888777777888887765532100 011222 2233333333 455555545 34669999999
Q ss_pred HHHHHh
Q 015366 165 YLADQR 170 (408)
Q Consensus 165 YL~~rR 170 (408)
|-..++
T Consensus 136 Y~~~~~ 141 (234)
T cd07686 136 YRQLTK 141 (234)
T ss_pred HHHHHH
Confidence 999988
No 207
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=29.97 E-value=25 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=17.6
Q ss_pred cccchhhHHHHHHHHHHhhccc
Q 015366 347 KEKNWQFFFLFIVFFFLFTTGW 368 (408)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~ 368 (408)
-||.|-+|-|+.++.|+...|+
T Consensus 12 YEr~Wi~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 12 YERGWIAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 4889999999988888766554
No 208
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=29.96 E-value=2.4e+02 Score=28.88 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYL 166 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAA------rla~LHE~Ve~lKE~YL 166 (408)
+++-..++++|.+-|++.+..|.... .++..+...|+++.+..++.+. ....+-++++.++++-+
T Consensus 52 l~~~~~~~~qy~~n~~~~~~~l~~~~---------~~L~~i~~~l~~~r~~~v~a~n~t~s~~~r~aia~e~~~l~~~l~ 122 (404)
T PRK08870 52 LSQQSALLDQYTKNINLARNRLQQEE---------STLGSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLL 122 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44455677778888888888886542 3488999999999998887643 66788889999999888
Q ss_pred HHHh
Q 015366 167 ADQR 170 (408)
Q Consensus 167 ~~rR 170 (408)
..--
T Consensus 123 ~~~N 126 (404)
T PRK08870 123 NLAN 126 (404)
T ss_pred HHHh
Confidence 8755
No 209
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.95 E-value=99 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
.|+...+.++|+++..++.+++++|+.|
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544
No 210
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=29.90 E-value=3.2e+02 Score=30.49 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 146 HVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 146 aLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
..+.++..+++++...|+.|-...+.
T Consensus 258 ~~~~~l~~~~~~l~~~~~~~~~~~~~ 283 (759)
T PF01496_consen 258 KYAEELEAWYEYLRKEKEIYEALNKF 283 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777788888888777665553
No 211
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.78 E-value=3.3e+02 Score=26.35 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhh
Q 015366 101 GEFRQWIEELEQLIL 115 (408)
Q Consensus 101 ~~yRQqIEELEr~L~ 115 (408)
..|...++++|+.+.
T Consensus 145 d~~~~~l~~l~~~~~ 159 (318)
T TIGR00383 145 DSYFPLLENIEDELE 159 (318)
T ss_pred hccHHHHHHHHHHHH
Confidence 345555666665553
No 212
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=29.73 E-value=3.9e+02 Score=23.47 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 015366 132 SLPQVISNVHIFFVHV---------AAKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 132 ~L~~aL~n~Hq~FVaL---------AArla~LHE~Ve~lKE~YL~~r 169 (408)
+|+.-|..+|+|.+.- .+.++++-.-++++|+.+.+..
T Consensus 75 eiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~~l~~Lr~aW~e~~ 121 (124)
T TIGR00208 75 ELSASLGALYDYMYRRLVQANIKNDTSKLAEVEGYVRDFRDAWKEAI 121 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888999988854 3345555555667777665543
No 213
>PRK04406 hypothetical protein; Provisional
Probab=29.71 E-value=1e+02 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQL 113 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~ 113 (408)
.++|+...+-|.+-.++|++|++.
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 214
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=29.54 E-value=1.3e+02 Score=24.20 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhcCC-CCCcc
Q 015366 150 KAESIHQYVETMKTAYLADQ--RRRGD-GSDPF 179 (408)
Q Consensus 150 rla~LHE~Ve~lKE~YL~~r--Rr~GD-~~DPF 179 (408)
-.++|.+++.++|+.|.++| +..|. ..||-
T Consensus 13 s~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~ 45 (69)
T PRK14549 13 SPEEREEKLEELKLELLKERAQAAMGGAPENPG 45 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcCccccH
Confidence 35889999999999999998 46777 78875
No 215
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.50 E-value=5.5e+02 Score=25.17 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
..+..++...++.+|..+++.++.+.+.+...
T Consensus 153 ~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~ 184 (319)
T PF02601_consen 153 DELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQ 184 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555566666666666666666666666543
No 216
>PRK10325 heat shock protein GrpE; Provisional
Probab=29.46 E-value=2.6e+02 Score=26.69 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV---AAKAESIHQYVETMKTAY 165 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL---AArla~LHE~Ve~lKE~Y 165 (408)
|.++.++||++=.+.++.++++.+.-.. ....+|-.++.++...+-+. ...+..|++.|+.....+
T Consensus 62 ~lR~~Ae~eN~rkR~~ke~~~~~~~a~~-----------~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~l 130 (197)
T PRK10325 62 ILRVKAEMENLRRRTELDIEKAHKFALE-----------KFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSM 130 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHH
Confidence 4455666666666666666665554321 12456666777777665432 135688999999999999
Q ss_pred HHHHhhcC-----CCCCcch
Q 015366 166 LADQRRRG-----DGSDPFL 180 (408)
Q Consensus 166 L~~rRr~G-----D~~DPFa 180 (408)
++.....| ...+||+
T Consensus 131 ~~~L~~~Gv~~i~~~G~~FD 150 (197)
T PRK10325 131 LDVVRKFGVEVIAETNVPLD 150 (197)
T ss_pred HHHHHHCcCeeeCCCCCCCC
Confidence 99988544 3457883
No 217
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.40 E-value=2.2e+02 Score=26.49 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
++++.+.+.-.++.+.+++|++|...... .+.|...+.++.+-...+..+|...+..+..+=
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l~~hq~~~~~----------I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEELQEHQENQAR----------IQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788888888888888864422 667777777777777777777777776666554
No 218
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=29.39 E-value=5e+02 Score=25.59 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
++..+|+..|...+..|-..=+.|....+ .+ .++++-.....+-.+++...+++.+.|+.|-+.
T Consensus 2 ~~~~~~~~~~d~lq~~i~~as~~lNd~TG--Ys------------~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~a 65 (207)
T PF05546_consen 2 QLSKKLSFYMDSLQETIFTASQALNDVTG--YS------------EIEKLKKSIEELEDELEAARQEVREAKAAYDDA 65 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccC--hH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998888876543 22 344445555555667788888888888888776
No 219
>PRK00736 hypothetical protein; Provisional
Probab=29.35 E-value=1.1e+02 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
|-.++|+...+-|.+-.++|++|++.|
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 220
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.31 E-value=2.8e+02 Score=27.12 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=26.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
..+|..-+..+.+-...+-.+++.+.+++-.++..|=|+|||
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666765
No 221
>PRK14151 heat shock protein GrpE; Provisional
Probab=29.21 E-value=2.8e+02 Score=26.13 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcc
Q 015366 130 LQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTAYLADQRRRG-----DGSDPF 179 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLA---Arla~LHE~Ve~lKE~YL~~rRr~G-----D~~DPF 179 (408)
..+|-.++.++-...-+.- ..+..+++.|+.....+++...+.| -..+||
T Consensus 73 ~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~F 130 (176)
T PRK14151 73 AGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLKRYQLEAVDPHGEPF 130 (176)
T ss_pred HHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 4445555555555544321 2357889999999999998887644 235777
No 222
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=29.11 E-value=2.8e+02 Score=22.01 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhHHHHHHH
Q 015366 138 SNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQ 190 (408)
Q Consensus 138 ~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~GD~~DPFaEAdRrE~Ark 190 (408)
.++++..-..-.++..+.+++.+.++++.++... |+|++.+-++..++
T Consensus 48 ~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~-----~~~D~~~i~a~~~~ 95 (125)
T PF13801_consen 48 AKLRALMDEFRQEMRALRQELRAARQELRALLAA-----PPPDEAAIEALLEE 95 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----SSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHH
No 223
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.11 E-value=4.4e+02 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
+..++++|...+.+...++|++|..+.
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~ 174 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLL 174 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677999999999999999999885
No 224
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.10 E-value=3.4e+02 Score=29.66 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
.+.|...++++..-.-.+-+++..+.++++.+++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555566655555544443
No 225
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.08 E-value=3.2e+02 Score=31.12 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=4.2
Q ss_pred cchhhhccCC
Q 015366 72 VPVFDFYRGL 81 (408)
Q Consensus 72 ~Pv~Dfys~~ 81 (408)
.|++....|.
T Consensus 475 ~~~Ykl~~G~ 484 (782)
T PRK00409 475 RPTYRLLIGI 484 (782)
T ss_pred cEEEEEeeCC
Confidence 3444444444
No 226
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.08 E-value=1.1e+02 Score=24.85 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
|-.++|+...+-+.+-+++|++|++.|
T Consensus 19 fQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 19 FQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455544444
No 227
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.03 E-value=2.1e+02 Score=30.70 Aligned_cols=41 Identities=5% Similarity=0.070 Sum_probs=25.5
Q ss_pred ccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 130 LQSLPQVISNVHIF---FVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~---FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+++|....+++.+- +......++.+.++++++++.|...-.
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~ 367 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAV 367 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444443333 333445788888888888888887754
No 228
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=28.66 E-value=4e+02 Score=29.15 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 015366 93 VARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~ 115 (408)
..++++++.++++.++.|++...
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~~~ 67 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSYLP 67 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Confidence 56667778888888888777764
No 229
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.51 E-value=5.3e+02 Score=30.45 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~ 167 (408)
+.+.++..|-.|=.--+..+||.|..+..+. .++.+.+++....|.-+|-++-..|..+|.-.|..-+
T Consensus 35 ~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~------------~d~~~~~erv~~~~l~var~ll~q~r~ie~~~e~~~~ 102 (1096)
T KOG4427|consen 35 FIQRVLRSYLVRKKAQIEIQEEFDNLFSCDS------------VDLTKVLERVARPFLPVARSLLVQHRKIEAREERLEQ 102 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------------cchHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556677777776666677778888885432 4677899999999999999999999999999999999
Q ss_pred HHhh
Q 015366 168 DQRR 171 (408)
Q Consensus 168 ~rRr 171 (408)
.||.
T Consensus 103 iCr~ 106 (1096)
T KOG4427|consen 103 ICRK 106 (1096)
T ss_pred HHHH
Confidence 9994
No 230
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.51 E-value=4e+02 Score=25.26 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015366 94 ARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L 114 (408)
.++|.++.+++..|++.|+..
T Consensus 55 k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 55 KELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888865
No 231
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=28.45 E-value=85 Score=28.97 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
.+.|.+.+++|+++..+|++.-+|||+.-.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~ 97 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAK 97 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999764
No 232
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=28.43 E-value=1.2e+02 Score=29.62 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC
Q 015366 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR--RRGDG 175 (408)
Q Consensus 99 rL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR--r~GD~ 175 (408)
.++.|+++||..-+.- +...+..=..=-+.|++-...++.|-++.++-++.||-+++ |.||.
T Consensus 60 ~le~Y~kCielAa~Iq---------------~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~ 123 (203)
T PF11207_consen 60 ALEKYSKCIELAAQIQ---------------HIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRFGDQ 123 (203)
T ss_pred HHHHHHHHHHHHhcCe---------------eechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhccCcH
Confidence 5677888887643311 22223322333467888889999999999999999999988 77864
No 233
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.31 E-value=1e+02 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L 114 (408)
+.+|=++.++++..-++.|++||++|
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555555888888888876
No 234
>PLN02943 aminoacyl-tRNA ligase
Probab=27.88 E-value=3e+02 Score=31.99 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
+.+-+.+.|++++.++++|+.+|+.|.-. . .-.-+|.++.. .-.+-...+-.+++.|.+++++++
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~-----~-F~~KAP~evv~---~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSP-----K-FVEKAPEDVVR---GVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----h-hhhcCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888999999999999888888422 1 11134544433 333323344445555555555554
No 235
>PLN02718 Probable galacturonosyltransferase
Probab=27.77 E-value=3e+02 Score=31.00 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHH
Q 015366 100 LGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV 145 (408)
Q Consensus 100 L~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FV 145 (408)
..+.|++|.|+|+.|..... .++.|+.....|+.+-+...
T Consensus 193 ~~el~~~i~e~~~~l~~~~~------d~~lp~~~~~~~~~m~~~~~ 232 (603)
T PLN02718 193 VKELRLRTKELERAVGDATK------DKDLSKSALQRMKSMEVTLY 232 (603)
T ss_pred HHHHHHHHHHHHHHHhcccC------CCCCCHhHHHHHHHHHHHHH
Confidence 45778899999999953321 22457777777777776665
No 236
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.77 E-value=2.9e+02 Score=23.99 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L 114 (408)
++.+.+...++++....++++++.+++-+
T Consensus 31 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el 59 (158)
T PF03938_consen 31 SPAGKDAQAKLQEKFKALQKELQAKQKEL 59 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888777777766
No 237
>COG5384 Mpp10 U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis]
Probab=27.72 E-value=55 Score=35.39 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L 114 (408)
+..||++-.+.++||||||+.+
T Consensus 274 LSS~Ek~q~~m~eqIeeLE~e~ 295 (569)
T COG5384 274 LSSFEKQQIEMDEQIEELEKEL 295 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999977
No 238
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.64 E-value=2.8e+02 Score=27.37 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 015366 101 GEFRQWIEELEQLI 114 (408)
Q Consensus 101 ~~yRQqIEELEr~L 114 (408)
..|-..+|++|..+
T Consensus 153 d~~~~~l~~i~~~l 166 (324)
T PRK09546 153 DHASEFIEELHDKI 166 (324)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555566666555
No 239
>PRK12804 flagellin; Provisional
Probab=27.61 E-value=2.8e+02 Score=27.36 Aligned_cols=81 Identities=9% Similarity=0.087 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA-------KAESIHQYVETMKTAY 165 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAA-------rla~LHE~Ve~lKE~Y 165 (408)
+.++..++..|++-+.-+...+..... ....++.+...|.++.+.-++.+. ..+.|.++++.++++.
T Consensus 49 ~~~l~~~~~~~~~~~~n~~~~~s~l~~------ad~~l~~i~~~l~r~rel~v~a~n~gt~s~~dr~~i~~E~~~l~~~i 122 (301)
T PRK12804 49 SEKMRGQIRGLEMASKNAQDGISLIQT------AEGALTETHSILQRVRELVVQAGNTGTQDGTDLGAIQDEIKALVDEI 122 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666655555554432210 013478899999999999988753 7888999999999999
Q ss_pred HHHHh-hcCCCCCcc
Q 015366 166 LADQR-RRGDGSDPF 179 (408)
Q Consensus 166 L~~rR-r~GD~~DPF 179 (408)
+..-. ...+.+..|
T Consensus 123 ~~~an~~~~nG~~lf 137 (301)
T PRK12804 123 DGISDRTEFNGKKLL 137 (301)
T ss_pred HHHHHhCCCCCeeee
Confidence 88865 344555666
No 240
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=27.51 E-value=1.5e+02 Score=24.81 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIF 143 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~ 143 (408)
+.+++++..++++++++|+.+.-....-.. ..-+.+...++.+|+|
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~~~l~~----~~~~~v~~hI~lLheY 48 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELEAELIE----DPEKIVKRHIKLLHEY 48 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CHHHHHHHHHHHHHHH
Confidence 344555555555555555555332110000 1235566677777776
No 241
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.25 E-value=3.2e+02 Score=26.67 Aligned_cols=61 Identities=11% Similarity=0.250 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 015366 101 GEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKA-ESIHQYVETMKTAYL 166 (408)
Q Consensus 101 ~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArl-a~LHE~Ve~lKE~YL 166 (408)
+.|+...+.+.++|...+. -.+++ +.++-..|..+|.-|..+--+| +..=|.|=.+|-.||
T Consensus 129 ~ac~eF~~hV~~lLreQs~--~RPIs---~keiE~m~~~i~~Kf~~iq~qLKQstCEaVm~LRsRfl 190 (191)
T PF03792_consen 129 QACNEFTEHVMNLLREQSE--FRPIS---PKEIERMVNIIHRKFSKIQMQLKQSTCEAVMILRSRFL 190 (191)
T ss_pred HHhhhhHHHHHHHHHHhcc--cCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456666677765544 34565 8999999999999999884444 344556777777776
No 242
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.20 E-value=3.8e+02 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
...|..-...+|+-||....++..+|+.+..++..+..+.++
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ 243 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888888888888888777777777663
No 243
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.16 E-value=3.9e+02 Score=22.69 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=28.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 129 LLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 129 aPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
..+++..++.++..-.-.+-.++..|.++.+.+++.+-+.++
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776666666777777777777666666655
No 244
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=27.07 E-value=3.1e+02 Score=25.61 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHhhchHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhccCC
Q 015366 2 ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGL 81 (408)
Q Consensus 2 eR~k~~lqeL~~~V~~mlrntE~AvRsf~~lRprf~r~~~~~~~~~~~~s~~~Ga~~a~~~~~Qp~~~~~~Pv~Dfys~~ 81 (408)
.|-|..|..|++-+..|||.+-..++ + + ...|++. .|.. .-.|
T Consensus 8 ~kvK~Lv~~LreSl~~~~k~AA~~l~--q----n------~~~D~g~-----~~~~------------~d~~-------- 50 (148)
T PF11568_consen 8 SKVKSLVGPLRESLSNLMKTAAQNLQ--Q----N------SLVDNGT-----RGKS------------SDEP-------- 50 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H----h------ccccccc-----cccc------------ccCc--------
Confidence 46688888888888899988766665 1 1 1223331 1111 1112
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 82 PKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 82 p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
+.||++-|++|-..=++||.+|.
T Consensus 51 -----------~~RFdK~lEeFysiCDQIEl~L~ 73 (148)
T PF11568_consen 51 -----------VPRFDKNLEEFYSICDQIELHLK 73 (148)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999883
No 245
>PRK14141 heat shock protein GrpE; Provisional
Probab=27.03 E-value=3.1e+02 Score=26.73 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcch
Q 015366 130 LQSLPQVISNVHIFFVHVA--------AKAESIHQYVETMKTAYLADQRRRG-----DGSDPFL 180 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLA--------Arla~LHE~Ve~lKE~YL~~rRr~G-----D~~DPFa 180 (408)
..+|-.++.++....-+.- ..+..|++.|+.....+++...++| -..++|+
T Consensus 84 ~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FD 147 (209)
T PRK14141 84 ARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGVKKLDPEGQKFD 147 (209)
T ss_pred HHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
Confidence 4444555555555544321 2367889999999889988877533 3356773
No 246
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.84 E-value=5.1e+02 Score=26.89 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
.++++.+|.+.+++.++|++......++..-.+. ..-..|...+..-.+-=-.|-..+..|.+++.+++..
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~--~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPE--KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3777777777777777777765433322111110 1235677777777777778888888888887777665
No 247
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.61 E-value=2.8e+02 Score=33.01 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
++.++.+++...+++|+++|.-+..... . ...++|..-+..+..-.-.+-.++..+.+..+.+++..-.+
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~---~----~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL---D----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc---c----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888899999999999988874422 1 12566666666666666655444444444444444444333
No 248
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.56 E-value=4.8e+02 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 137 ISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 137 L~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+..+.+-+..+-.+...++.+++.+++...+.+..
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555566666677777777777777776643
No 249
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.53 E-value=3.6e+02 Score=27.97 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
...+-+|+++.++++++++.|..+..
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888888887754
No 250
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.44 E-value=1.4e+02 Score=27.52 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L 114 (408)
..++.++.++..-|.+||.||-..
T Consensus 30 ~R~~~lk~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 30 SRKDDLKADIKEAKTEIENLEDAS 53 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999998744
No 251
>PHA03185 UL14 tegument protein; Provisional
Probab=26.43 E-value=6.5e+02 Score=25.00 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHhhc
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV-HVAAKAESIHQY----VETMKTAYLADQRRR 172 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FV-aLAArla~LHE~----Ve~lKE~YL~~rRr~ 172 (408)
.||...+|.|.-|+.++-.+ .++..+|..-..|.- .+..+++...|+ .+.|.+.-.+..-..
T Consensus 65 aRve~VeQKar~Iq~rVEeQ-------------~a~r~iL~~hRRyL~pdf~e~lD~~ED~l~ekEd~L~dA~~~~~~~~ 131 (214)
T PHA03185 65 ARLEMLRQHAACVKIRVEEQ-------------AERRDFLIAHRRYLDPALGERLDEAEDRLADQEEQLEEAAANACLLS 131 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 35666666666666666432 233444443333221 233333333333 333333333332223
Q ss_pred CCC--CCcchhhhHHHHHHHHHh--hccCCcc
Q 015366 173 GDG--SDPFLEADRRETARQEAA--AKRVHPT 200 (408)
Q Consensus 173 GD~--~DPFaEAdRrE~Arkraa--a~RV~Pt 200 (408)
||. .+=...-+-++-.-||+. +++|+|-
T Consensus 132 Gdg~~~~~wl~e~DEaLLt~W~Le~aP~v~~~ 163 (214)
T PHA03185 132 GDGDPADGWMSPEDSDLLIMWQLGSAPAVRPG 163 (214)
T ss_pred CCCCcccccccccHHHHHHHHHHhcCCCCCCC
Confidence 443 222333334566788887 4566643
No 252
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=26.40 E-value=2.6e+02 Score=28.23 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQ 112 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr 112 (408)
+.+++++.+.=-.+=++-+++|..
T Consensus 197 Lr~~l~~l~~lk~eR~~l~~~Lk~ 220 (339)
T cd09238 197 LRSNLEELEALGNERAGIEDMMKA 220 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554433333333444433
No 253
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.36 E-value=3.9e+02 Score=26.26 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL 166 (408)
||...++.++|+++++.++|.-+ ..+ ..+|+++++- |.+-..++.|-+|++|.
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~----~~d--------------~~~lkkLq~~------qmem~~~Q~elmk~qfk 123 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQE----SGD--------------MKKLKKLQEK------QMEMMDDQRELMKMQFK 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hCC--------------HHHHHHHHHH------HHHHHHHHHHHHHHhhh
No 254
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.36 E-value=4.6e+02 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCC
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEE-LEQLILLDP 118 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEE-LEr~L~s~s 118 (408)
++=|.+..-++-+-+.+||++-.| +|..|...+
T Consensus 251 S~efak~~G~lvna~m~lr~~~qe~~e~~L~~Ln 284 (320)
T TIGR01834 251 SEENAKVHGKFINALMRLRIQQQEIVEALLKMLN 284 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555566666667777775544 566666553
No 255
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.36 E-value=2.2e+02 Score=27.90 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQY----VETMKTAYLADQRR 171 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~----Ve~lKE~YL~~rRr 171 (408)
.+|..-|+.+.+-.-.|=+++|.+.-+ .+++|+.|+++.+|
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555554444 34456677766554
No 256
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.28 E-value=3.5e+02 Score=30.73 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015366 94 ARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L 114 (408)
..++++|..|+.++|.||...
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~ 438 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEEN 438 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 257
>COG5293 Predicted ATPase [General function prediction only]
Probab=26.19 E-value=1.9e+02 Score=32.00 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=56.4
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCCcccccchHHHHHHHHHHHHHHH---
Q 015366 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD--RNSSSHGSSLLQSLPQVISNVHIFFVHVA--- 148 (408)
Q Consensus 74 v~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~--~~~S~itssaPQ~L~~aL~n~Hq~FVaLA--- 148 (408)
|..||+.+..--..||++-+.+.|.+|......+.++-+.....-. ++. ....+.+..++.+-+--..||
T Consensus 325 v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~-----g~~e~y~~l~ee~~~~~~elae~~ 399 (591)
T COG5293 325 VIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNR-----GVFEKYQTLCEEIIALRGELAELE 399 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHhhhHHHHH
Confidence 5667777777777888888888888887777666655443321100 111 125666666665554444443
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhh
Q 015366 149 ------AKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 149 ------Arla~LHE~Ve~lKE~YL~~rRr 171 (408)
.|++.+.++++.+|+.-|..-+|
T Consensus 400 ~rie~l~k~~~~~~~i~~lkhe~l~~~~r 428 (591)
T COG5293 400 YRIEPLRKLHALDQYIGTLKHECLDLEER 428 (591)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777766554
No 258
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=26.08 E-value=5.5e+02 Score=30.05 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 131 Q~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
...+..|..+-+.+..+-.++-++.+.-+++|..|+++..
T Consensus 88 ~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E 127 (829)
T KOG2189|consen 88 APPPREIIDLEEQLEKLESELRELNANKEALKANYNELLE 127 (829)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456777888888888888999999999999999988744
No 259
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.07 E-value=2.8e+02 Score=27.18 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 139 NVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 139 n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.+.+-...+-.+++.+++++..++..|-|+|||
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR 76 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRR 76 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555554555555555554
No 260
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.04 E-value=3.6e+02 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
..-+|++-+..|++-|+-|-+.+...
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e 43 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGT 43 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhC
Confidence 34579999999999999999998765
No 261
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=26.00 E-value=2.1e+02 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
+.+++.-+.++|..+++.|++++....
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~ 30 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRS 30 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888887764
No 262
>PRK14162 heat shock protein GrpE; Provisional
Probab=25.75 E-value=3.3e+02 Score=26.17 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAYLA 167 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA--Arla~LHE~Ve~lKE~YL~ 167 (408)
.++.++||++-.++++.++++.+.-.. ....+|-.++.++-...-+.. ..+..|.+.|+.....+++
T Consensus 63 lR~~AEfeN~rkR~~kE~e~~~~~a~~-----------~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~ 131 (194)
T PRK14162 63 LRSQAEIQNMQNRYAKERAQLIKYESQ-----------SLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVK 131 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444443211 124555556666665554321 2357788999999999999
Q ss_pred HHhhcC-----CCCCcc
Q 015366 168 DQRRRG-----DGSDPF 179 (408)
Q Consensus 168 ~rRr~G-----D~~DPF 179 (408)
...+.| -..++|
T Consensus 132 vL~~~GV~~I~~~G~~F 148 (194)
T PRK14162 132 ALKDHGVTEIKADGEKF 148 (194)
T ss_pred HHHHCCCEEeCCCCCCC
Confidence 887644 345677
No 263
>PRK10093 primosomal replication protein N''; Provisional
Probab=25.74 E-value=1e+02 Score=29.33 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
+++-+.-+|.||++||+-+..+|+.+.
T Consensus 141 lq~el~alegRL~RCrqAl~~IE~~Ie 167 (171)
T PRK10093 141 LHREVEAYEGRLARCRHALEKIENVLA 167 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999874
No 264
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=25.54 E-value=7.1e+02 Score=26.75 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD-- 168 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~-- 168 (408)
+-+.++.++++.|...++.||..|..-- .-+..++.-|+.+++-...|-.+|..-..-.+.+.+..-+.
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq---------~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~i 84 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQ---------NDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVI 84 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 3456666788888888888888874321 12677888888888888888888776555444443322222
Q ss_pred -----Hh-hcCCCCCcchhh
Q 015366 169 -----QR-RRGDGSDPFLEA 182 (408)
Q Consensus 169 -----rR-r~GD~~DPFaEA 182 (408)
+. ..|+..+.|.+.
T Consensus 85 pP~lI~~I~~~~v~e~~~~~ 104 (508)
T PF04129_consen 85 PPDLIRSICEGPVNEQYIEE 104 (508)
T ss_pred CHHHHHhHhcCCCCHHHHHH
Confidence 11 266677766665
No 265
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.53 E-value=3.7e+02 Score=26.64 Aligned_cols=42 Identities=5% Similarity=0.057 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.++....+..+.+-...+-.+++.+.++.-.++..|-|+|||
T Consensus 62 ~~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR 103 (238)
T PRK14143 62 AADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKR 103 (238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544455555555555555555555556665
No 266
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.52 E-value=8.6e+02 Score=26.09 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 141 HIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 141 Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
.|-|.++=+||-+|-++++++-+.|-++.=
T Consensus 64 qeKFl~IR~KlleL~~~lQ~lS~df~~LqP 93 (379)
T PF11593_consen 64 QEKFLLIRSKLLELYNKLQELSSDFQKLQP 93 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 356788888888888888888888877643
No 267
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=25.51 E-value=3.3e+02 Score=28.26 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 015366 95 RFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 95 ~FEerL~~yRQqIEELEr~L 114 (408)
+||+.+.+++.+|+||++.-
T Consensus 10 ~fe~~i~el~~~i~~l~~~~ 29 (322)
T CHL00198 10 DFMKPLAELESQVEELSKLA 29 (322)
T ss_pred chhhhHHHHHHHHHHHHhhh
Confidence 69999999999999998863
No 268
>PTZ00464 SNF-7-like protein; Provisional
Probab=25.50 E-value=1.2e+02 Score=29.32 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR 172 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~ 172 (408)
=..||++|..+..+...||+++-.....+-....-.+.+.=..+|..+|.-+ . ..+|+.|.+.++++.+.--+.-..+
T Consensus 70 KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i-~-id~Vd~l~Dei~E~~e~~~EI~e~L 147 (211)
T PTZ00464 70 KRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL-N-VDKVEDLQDELADLYEDTQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777777766332210000000012333355777888776 3 4688888888888877766666654
Q ss_pred CC---CCCcchhhhHHH
Q 015366 173 GD---GSDPFLEADRRE 186 (408)
Q Consensus 173 GD---~~DPFaEAdRrE 186 (408)
+. ..|.+.|.+=.+
T Consensus 148 s~~~~~~~~~DEdELe~ 164 (211)
T PTZ00464 148 GRAYDVPDDIDEDEMLG 164 (211)
T ss_pred hCCCCCCCCCCHHHHHH
Confidence 42 124566665543
No 269
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=25.47 E-value=2.7e+02 Score=28.94 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYL 166 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAA------rla~LHE~Ve~lKE~YL 166 (408)
+++=..++.+|.+-|+.....|.... .+++.+...|+++.+.-|+.+. ..+.|-++++.++++-+
T Consensus 53 l~~~~~~~~qy~~ni~~a~s~L~~~d---------saL~~i~~~l~~~rel~v~a~n~t~s~~dr~aia~e~~~l~~~l~ 123 (419)
T PRK06663 53 YKSRLFKLDRYQKNIDDGKDRLRYAE---------GYLQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLV 123 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777888877776442 3588899999999998887543 46688888999988888
Q ss_pred HHHh
Q 015366 167 ADQR 170 (408)
Q Consensus 167 ~~rR 170 (408)
..--
T Consensus 124 ~~aN 127 (419)
T PRK06663 124 DIAN 127 (419)
T ss_pred HHHh
Confidence 7754
No 270
>PF14282 FlxA: FlxA-like protein
Probab=25.43 E-value=4.3e+02 Score=22.64 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ 156 (408)
Q Consensus 97 EerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE 156 (408)
..++..++++|.+|+..|........ ..+..-...+..+..-...|=++++.|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~-----~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSD-----LDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654432111 11344444445555444444444444443
No 271
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.40 E-value=4.5e+02 Score=27.43 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
+=..+.|+.-..|++.+||++++....
T Consensus 11 ~efq~Lqethr~Y~qKleel~~lQ~~C 37 (330)
T PF07851_consen 11 KEFQELQETHRSYKQKLEELSKLQDKC 37 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777788888889888887544
No 272
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=25.39 E-value=4.1e+02 Score=29.11 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc--cccchHHHHHHHHHHHH-------------------
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSS--LLQSLPQVISNVHIFFV------------------- 145 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itss--aPQ~L~~aL~n~Hq~FV------------------- 145 (408)
.=+.+-|..++.+|...|-+.|.+|.-+.+..++..-+.-.+ ++.-==.+|+.-||--|
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888887766655332111000 01111113444444333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 146 -HVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 146 -aLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
-||...+..-..|+.||.+|.+.+.|
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeR 400 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMER 400 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 23444444455577788888877654
No 273
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.31 E-value=4.7e+02 Score=24.30 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 94 ARFEKYLGEFRQWIEELEQLI-LLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L-~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.++|.++.+++..|+++|... .+...++. +.-...-.....+.+..-.+-..++.+...++.+|..+.....+
T Consensus 54 ~~le~~~~~~~~~~~~~~~~A~~Al~~g~e-----dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQAELALAAGRE-----DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 274
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.24 E-value=3.4e+02 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
.+++.+.|..|.++...|++||--+.
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888887777775
No 275
>PRK14158 heat shock protein GrpE; Provisional
Probab=25.24 E-value=3e+02 Score=26.44 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcC----C--CCCcchhhhHHH
Q 015366 130 LQSLPQVISNVHIFFVHVA-AKAESIHQYVETMKTAYLADQRRRG----D--GSDPFLEADRRE 186 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLA-Arla~LHE~Ve~lKE~YL~~rRr~G----D--~~DPFaEAdRrE 186 (408)
..+|-.++.++-...-+.- ..+..|.+.|+.....+++...+.| + ..+||+ ++.-|
T Consensus 93 ~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FD-P~~HE 155 (194)
T PRK14158 93 ILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFD-PAYHQ 155 (194)
T ss_pred HHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCC-hHHhh
Confidence 4444455555555443221 2357789999999999999888655 3 367884 33433
No 276
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.15 E-value=3.7e+02 Score=21.74 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA 149 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAA 149 (408)
.+++++.++.+...+++++++-+-+...-. +. ....+|+...++++...|-+++.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~-~~----n~l~~dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLH-NT----NELLEDVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH----HHHHHHHHHHHHhHHHHHHHHHH
Confidence 455666666666666665555443321110 00 01356777777777777766643
No 277
>PRK12803 flagellin; Provisional
Probab=25.10 E-value=3e+02 Score=28.34 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 015366 96 FEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 96 FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA------Arla~LHE~Ve~lKE~YL~~r 169 (408)
-..++.+|.+-|.+....|+... ..++++...|+++.|.-|+.+ ...+.|.++++.++++.+..-
T Consensus 55 ~i~~l~q~~~Ni~~a~s~lqtae---------~aL~~i~~~LqrirELavqA~Ngt~s~~dR~ai~~Ei~qL~~~i~~ia 125 (335)
T PRK12803 55 QIRGLSQASRNTSKAINFIQTTE---------GNLNEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIA 125 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777776542 248899999999999999884 578899999999999998886
Q ss_pred h-hcCCCCCcch
Q 015366 170 R-RRGDGSDPFL 180 (408)
Q Consensus 170 R-r~GD~~DPFa 180 (408)
. ..-+.+..|.
T Consensus 126 n~t~fnG~~lf~ 137 (335)
T PRK12803 126 DQAQYNQMHMLS 137 (335)
T ss_pred HhCCcCCeeecc
Confidence 6 3445566663
No 278
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.08 E-value=3.1e+02 Score=23.12 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~Y 165 (408)
..+|+.+..+.+-|..||.-+...-+... ....+..-++.++.=.-.||.+|...-.+.+++++.=
T Consensus 4 ~~le~al~rL~~aid~LE~~v~~r~~~~~------~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 4 YSLEAALTRLEAAIDRLEKAVDRRLERDR------KRDELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788888999999999988843221111 1246667777777777777777777777666665543
No 279
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=24.97 E-value=4.2e+02 Score=25.75 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
|..+++..|..-.+.++..|+|+..+...-. ....++.....+..+.-..+-..+..+.+.|++.|..|=.+
T Consensus 67 W~~iL~ete~~A~~~~~~ae~l~~~i~~~l~--------~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~ 138 (237)
T cd07657 67 WKEIMDSTDQLSKLIKQHAEALESGTLDKLT--------LLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKL 138 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999998888888888887632100 12455555666666666677778888999999999999998
Q ss_pred Hh
Q 015366 169 QR 170 (408)
Q Consensus 169 rR 170 (408)
+|
T Consensus 139 ~~ 140 (237)
T cd07657 139 LE 140 (237)
T ss_pred HH
Confidence 87
No 280
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=24.88 E-value=1e+03 Score=26.95 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=11.8
Q ss_pred ecCCeeeeecccccchhh
Q 015366 336 QSNGHFILSDKKEKNWQF 353 (408)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~ 353 (408)
-.++-..|.-..-.+|.-
T Consensus 315 ~g~~GL~L~p~ec~sW~~ 332 (582)
T PF03276_consen 315 GGHLGLALTPNECGSWAS 332 (582)
T ss_pred cCCCccccCccccccHHH
Confidence 445556677777778864
No 281
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=24.82 E-value=1.2e+02 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.+++++.++++....+.|.++|+++.+.
T Consensus 80 ~~~l~~~~~~~~~~e~Rlr~mE~yVTS~ 107 (118)
T PRK10697 80 SELLDEVDRELAAGEQRLREMERYVTSD 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4678899999999999999999999654
No 282
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.76 E-value=3.6e+02 Score=25.48 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA----AKAESIHQYVETMKTAY 165 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA----Arla~LHE~Ve~lKE~Y 165 (408)
.++.++||+.-.+.++.+++..+.-.. ....+|-.++.++.....+.- ..+..+.+.|+.....+
T Consensus 43 lR~~AefeN~rkR~~ke~~~~~~~a~~-----------~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l 111 (178)
T PRK14161 43 IRTTAEIDNTRKRLEKARDEAKDYAIA-----------TFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDEL 111 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHH
Confidence 445677777766666666665543321 123455555566555544321 12567889999999999
Q ss_pred HHHHhhcC----CC--CCcch
Q 015366 166 LADQRRRG----DG--SDPFL 180 (408)
Q Consensus 166 L~~rRr~G----D~--~DPFa 180 (408)
++...+.| +. .+||+
T Consensus 112 ~~vL~~~Gv~~I~~~~G~~FD 132 (178)
T PRK14161 112 DKVFHKHHIEEIKPEIGSMFD 132 (178)
T ss_pred HHHHHHCCCEEecCCCCCCCC
Confidence 99888766 43 58883
No 283
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=24.75 E-value=3.5e+02 Score=27.24 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
+.+++++.+.=-.+=++-+++|+...+
T Consensus 193 Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 193 LKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666655555666666655443
No 284
>PRK10698 phage shock protein PspA; Provisional
Probab=24.65 E-value=5e+02 Score=25.01 Aligned_cols=72 Identities=7% Similarity=0.089 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCC----------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILL-DPDRNSSSHG----------SSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s-~s~~~~S~it----------ssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
-.++|.++..++..|++.|+.-.. ...++.. .. ....+.|..-+..+.+....|-.++..|..+|+++
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed-LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAELALRKEKED-LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999998886522 2111110 00 00122333335555555556666666666666666
Q ss_pred HHHH
Q 015366 162 KTAY 165 (408)
Q Consensus 162 KE~Y 165 (408)
|...
T Consensus 133 k~k~ 136 (222)
T PRK10698 133 RARQ 136 (222)
T ss_pred HHHH
Confidence 4433
No 285
>PRK14153 heat shock protein GrpE; Provisional
Probab=24.63 E-value=3.4e+02 Score=26.13 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV--AAKAESIHQYVETMKTAYL 166 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL--AArla~LHE~Ve~lKE~YL 166 (408)
|.++.++||++-.+.++.++++.+.-.. ....+|-.++.++....-+. -..+..|++.|+.....++
T Consensus 56 ~lR~~AEfeN~rKR~~kE~e~~~~~a~~-----------~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvemi~k~~~ 124 (194)
T PRK14153 56 LFRLAAEFDNFRKRTAREMEENRKFVLE-----------QVLLDLLEVTDNFERALESARTAEDMNSIVEGIEMVSKQFF 124 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3455666666666666655555443311 12334444455544443321 1235788999999999999
Q ss_pred HHHhhcC-----CCCCcch
Q 015366 167 ADQRRRG-----DGSDPFL 180 (408)
Q Consensus 167 ~~rRr~G-----D~~DPFa 180 (408)
+...+.| -..+||+
T Consensus 125 ~vL~k~Gv~~I~~~G~~FD 143 (194)
T PRK14153 125 SILEKYGLERIECEGEEFD 143 (194)
T ss_pred HHHHHCCCeeeCCCCCCCC
Confidence 9888544 3467883
No 286
>PRK02119 hypothetical protein; Provisional
Probab=24.62 E-value=1.5e+02 Score=24.24 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015366 93 VARFEKYLGEFRQWIEELEQLI 114 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L 114 (408)
+.+.|.++..-...||+|-..|
T Consensus 11 i~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 287
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.60 E-value=4.2e+02 Score=22.12 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=26.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
-.++..++..+.+---.+-.++..+.+.+.++++.+-..+.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677666666666666666666666666666655543
No 288
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=24.47 E-value=1e+02 Score=29.79 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=47.4
Q ss_pred HHHHHH-HHHHHHHHhhchHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhccCCCC
Q 015366 5 KAQLQE-RMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPK 83 (408)
Q Consensus 5 k~~lqe-L~~~V~~mlrntE~AvRsf~~lRprf~r~~~~~~~~~~~~s~~~Ga~~a~~~~~Qp~~~~~~Pv~Dfys~~p~ 83 (408)
|.+|++ .+..+.++||.=|.|-.-|..|+..... || -.|-..+
T Consensus 32 k~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk----------------~A------------------e~~k~~m-- 75 (193)
T PF12925_consen 32 KERLEEKHRERMTKVMKEWSEAEERYKELPKADPK----------------KA------------------EQFKKEM-- 75 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHH----------------HH------------------HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh----------------hh------------------hHHHHHH--
Confidence 344443 4578889999999999988766422211 01 1122333
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 84 KPSAFLQQTVARFEKYLGEFRQWIEEL 110 (408)
Q Consensus 84 ~PSpFF~elV~~FEerL~~yRQqIEEL 110 (408)
.+.|+++|..+|+.-..-|++++++
T Consensus 76 --~~rFQ~~v~aLE~e~~~er~qL~~~ 100 (193)
T PF12925_consen 76 --TQRFQKTVQALEQEAAAERQQLVET 100 (193)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999885
No 289
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.45 E-value=5.3e+02 Score=24.26 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhchHHHHH
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVR 27 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvR 27 (408)
+..|++++.....+-+..|.++.
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 290
>KOG4719 consensus Nuclear pore complex protein [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=1.8e+02 Score=34.33 Aligned_cols=71 Identities=25% Similarity=0.370 Sum_probs=42.4
Q ss_pred cCCCcccccccCCCCCCcccccCCCCCCccccccccccCCCCC----CCCCCCCCCCCCCCCCCcccCCcccCCCCCCCC
Q 015366 226 VAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSA----SPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVP 301 (408)
Q Consensus 226 s~p~~s~~ps~s~~s~~s~f~tpssaps~t~s~slF~tp~t~~----~~~~lfgs~~s~~~stp~~g~~st~~~FGs~tp 301 (408)
..|+...+|+.++++.|+.-.-|. |+. ..+||.-+.++ -+++.||..- +.-+.|.+|-.|...+||+-+|
T Consensus 938 n~p~~~~tps~ss~ssf~~~tg~n--psa---s~~fggitntatnal~ps~~fga~~-~s~~~~~~~n~ss~fafgsg~p 1011 (1053)
T KOG4719|consen 938 NTPTSGTTPSSSAGSSFVFGTGPN--PSA---SPAFGGITNTATNALFPSGSFGAVS-SSSQPPVFGNQSSQFAFGSGTP 1011 (1053)
T ss_pred CCccccccCCcccccccccccCCC--cCc---ccccccccccccccccccccccccc-CCCCCCccCCcchhhcccCCCC
Confidence 355555667655555555433333 333 37899655553 2455688633 3334777888888889988555
Q ss_pred C
Q 015366 302 S 302 (408)
Q Consensus 302 s 302 (408)
.
T Consensus 1012 ~ 1012 (1053)
T KOG4719|consen 1012 P 1012 (1053)
T ss_pred C
Confidence 4
No 291
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=24.36 E-value=1.7e+02 Score=19.99 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELE 111 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELE 111 (408)
+--+.+||.+|..+++...+.|
T Consensus 4 qakla~YqaeLa~vqk~na~~~ 25 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKANADYE 25 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3446677777777777665543
No 292
>PRK11519 tyrosine kinase; Provisional
Probab=24.25 E-value=1e+03 Score=26.54 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhh
Q 015366 5 KAQLQERMAVVKDMLRNTEIAVRSFM 30 (408)
Q Consensus 5 k~~lqeL~~~V~~mlrntE~AvRsf~ 30 (408)
.+-|++-...+++-|+.+|.++..|+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888899999999999887
No 293
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=24.25 E-value=1.4e+02 Score=32.58 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 85 PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 85 PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
=..++++=++++++.|+.+.+..+++++.+.-+-....+.. =.++..++..+++.++..|-+.=.++..|++.
T Consensus 448 ~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~~~----~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~ 520 (524)
T COG5391 448 SIESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVR----NSDLEKILKSVADSHIEWAEENLEIWKSVKEQ 520 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888888888888888877777643211111111 36888999999999999988888888777654
No 294
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=24.17 E-value=44 Score=28.46 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=18.4
Q ss_pred eceeeeecCCeeeeeccc-ccchhh
Q 015366 330 FQYLQLQSNGHFILSDKK-EKNWQF 353 (408)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~-~~~~~~ 353 (408)
--||.||.+|.|+|.|+. ..-||-
T Consensus 54 ~~~~~L~~~GNlvl~d~~~~~lW~S 78 (114)
T PF01453_consen 54 GCYLVLQDDGNLVLYDSSGNVLWQS 78 (114)
T ss_dssp SEEEEEETTSEEEEEETTSEEEEES
T ss_pred CeEEEEeCCCCEEEEeecceEEEee
Confidence 357999999999999853 344775
No 295
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.02 E-value=5.9e+02 Score=27.01 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 137 ISNVHIFFVHVAAKAESIHQYVETMKTA 164 (408)
Q Consensus 137 L~n~Hq~FVaLAArla~LHE~Ve~lKE~ 164 (408)
+..+.+.+-.+..++..+++++.++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERR 153 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444433
No 296
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.97 E-value=6.7e+02 Score=24.70 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=4.9
Q ss_pred ccccchhhHH
Q 015366 346 KKEKNWQFFF 355 (408)
Q Consensus 346 ~~~~~~~~~~ 355 (408)
.++.-|++++
T Consensus 400 ~~~~~~~~~l 409 (423)
T TIGR01843 400 GERTVIEYLL 409 (423)
T ss_pred CCccHHHHHH
Confidence 3444465544
No 297
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=23.94 E-value=8.3e+02 Score=25.40 Aligned_cols=22 Identities=9% Similarity=0.339 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIE 108 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIE 108 (408)
+++.++++.|+++|..++...+
T Consensus 353 ~~~~~ll~~~~~ei~~~~~~f~ 374 (579)
T PF08385_consen 353 EKYEQLLQQFKEEIDQLKKIFD 374 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666555555555443
No 298
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.89 E-value=1.4e+02 Score=28.46 Aligned_cols=29 Identities=34% Similarity=0.232 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDP 118 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s 118 (408)
-+|-..||+-+.+-+.||+.||+++-..+
T Consensus 38 ~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g 66 (167)
T COG3685 38 PELKAAIEKHLEETKGQIERLEQVFERLG 66 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999997744
No 299
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=23.80 E-value=2.9e+02 Score=27.80 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015366 149 AKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 149 Arla~LHE~Ve~lKE~YL~~r 169 (408)
+.|..||++|.++|.+-.+++
T Consensus 272 ~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 272 SEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356666777766666555443
No 300
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.69 E-value=2.8e+02 Score=24.74 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 015366 137 ISNVHIFFVHV----AAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 137 L~n~Hq~FVaL----AArla~LHE~Ve~lKE~YL~~ 168 (408)
++.-|++-..| .-++++|...|+++|+-|...
T Consensus 80 l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 80 LQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 346777788899999999754
No 301
>PF14772 NYD-SP28: Sperm tail
Probab=23.66 E-value=4.4e+02 Score=22.06 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 015366 129 LLQSLPQVISNVHIFFVHVAAK----AESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 129 aPQ~L~~aL~n~Hq~FVaLAAr----la~LHE~Ve~lKE~YL~~rRr 171 (408)
-|++|..-|+.+.+.|-.+=.+ +..|.+.++..-++|....|+
T Consensus 52 ~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~~~lr~ 98 (104)
T PF14772_consen 52 KPQELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQYVKALRK 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999976544 556677788888899888876
No 302
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.64 E-value=4.7e+02 Score=23.72 Aligned_cols=71 Identities=7% Similarity=0.139 Sum_probs=37.9
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc-chHHHHHHHHHHHHHHHHHH
Q 015366 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQ-SLPQVISNVHIFFVHVAAKA 151 (408)
Q Consensus 74 v~Dfys~~p~~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ-~L~~aL~n~Hq~FVaLAArl 151 (408)
...||..+-..=..++..+++.|++++..++.-++++|..- ..-+..+.++ +|...+.+..+.+..+-..+
T Consensus 51 iK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~~-------~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~ 122 (204)
T PF04740_consen 51 IKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSSS-------NAIIDEDFLESELKKKLNQLKEQIEDLQDEI 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccc-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777765222245666666777777766666655554210 0111123344 66666666666666554444
No 303
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.61 E-value=3.3e+02 Score=26.60 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+.+.||++-.+.++.++++.+.-.. ....+|-.++.++....-+ ...+..|++.|+....++++...+
T Consensus 87 ~~AefeN~RKR~~kE~e~~~~~a~e-----------~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~kql~~vL~k 154 (211)
T PRK14160 87 TVAEYDNYRKRTAKEKEGIYSDACE-----------DVLKELLPVLDNLERAAAV-EGSVEDLKKGIEMTVKQFKTSLEK 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554333211 1234445555555555432 345678999999999999998886
Q ss_pred cC----CCCCcc
Q 015366 172 RG----DGSDPF 179 (408)
Q Consensus 172 ~G----D~~DPF 179 (408)
+| +...||
T Consensus 155 ~GVe~I~~~G~F 166 (211)
T PRK14160 155 LGVEEISTEGEF 166 (211)
T ss_pred CCCEEeCCCCCC
Confidence 55 334477
No 304
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.49 E-value=2.9e+02 Score=27.92 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
+++.-+++|..|...++|.++|+..+..... -...|..-+. |+|=|. |-+++.|+.+|+.+|+..-+.
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~---------el~~L~TYkD--~EYPvK-~vqIa~L~rqlq~lk~~qqdE 139 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQE---------ELNFLSTYKD--HEYPVK-AVQIANLVRQLQQLKDSQQDE 139 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhh--hhhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888889999999988853311 1344455555 666664 247777777777777765544
No 305
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.45 E-value=2.8e+02 Score=30.86 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
+++-+++||.+.+++.++.|+.|..-
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446777888888888888877543
No 306
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.44 E-value=2.5e+02 Score=31.26 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcCCC
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEEL--EQLILLDPD 119 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEEL--Er~L~s~s~ 119 (408)
.+-||++|..+|+....-||||.|+ +|+..+.++
T Consensus 291 nqhFQ~~v~sLEee~a~erqqlvetH~~RV~AmlNd 326 (615)
T KOG3540|consen 291 NQHFQKTVSSLEEEAARERQQLVETHEARVEAMLND 326 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999985 566666654
No 307
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=23.37 E-value=2.5e+02 Score=24.84 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV 147 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL 147 (408)
.++++| +....+|+++||.++.-..+....+. .+ .....+..||-.+
T Consensus 46 t~le~~---l~~L~~Ql~~Le~Cl~~~~~~~~~~~-----~~--~~~l~lk~YF~rI 92 (117)
T smart00076 46 TLLESL---LNELHQQLNHLEACLKQEMEEEDTPL-----PR--NTHLALRKYFQRI 92 (117)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhcccccCCc-----cc--cchHHHHHHHHHH
Confidence 345555 45556999999999964433222211 11 2345566666554
No 308
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=23.33 E-value=3.9e+02 Score=27.17 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 015366 96 FEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 96 FEerL~~yRQqIEELEr~L~ 115 (408)
|++.|..|..-+++|++.+.
T Consensus 256 f~~eL~kf~~~~~~l~~~~~ 275 (353)
T cd09236 256 FDKRLAKYDKDLDAVSEEAQ 275 (353)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 44555555555555555554
No 309
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.31 E-value=7.6e+02 Score=26.71 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=19.4
Q ss_pred CCCCCCcccccCCC-CCceeEEEeeeeceeee
Q 015366 305 STTSAGASLFSTPF-ASGILILFSFKFQYLQL 335 (408)
Q Consensus 305 st~~~g~slFstp~-~~~~~~~~~~~~~~~~~ 335 (408)
..+++|.-+|--.| |-|-.++.-.-=-|+-|
T Consensus 335 ~A~AdG~VvyA~~l~GYG~vvIldhG~gy~sl 366 (420)
T COG4942 335 KAIADGRVVYADWLRGYGLVVILDHGGGYHSL 366 (420)
T ss_pred eeecCceEEechhhccCceEEEEEcCCccEEE
Confidence 34567899999998 44555555544444444
No 310
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.14 E-value=4.1e+02 Score=23.25 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELE 111 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELE 111 (408)
..||.++|.+=|..-.+-+..|+++=
T Consensus 25 ~k~~~~LVkkGe~~~ee~k~~~~e~~ 50 (118)
T TIGR01837 25 SKFFNRLVKEGELAEKRGQKRFDESV 50 (118)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 46777888877777777666666543
No 311
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.99 E-value=3.9e+02 Score=25.72 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAYL 166 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA--Arla~LHE~Ve~lKE~YL 166 (408)
|.++.++||+.-.+.++.++++.+.-...- ..+|-.++.++....-+.. ..+..|++.|+.....++
T Consensus 63 ~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~-----------~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~ 131 (195)
T PRK14148 63 ALRAKAEMENIRKRAERDVSNARKFGIEKF-----------AKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKMLV 131 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcC
Q 015366 167 ADQRRRG 173 (408)
Q Consensus 167 ~~rRr~G 173 (408)
+...+.|
T Consensus 132 ~vL~k~G 138 (195)
T PRK14148 132 DILKKNG 138 (195)
T ss_pred HHHHHCC
No 312
>PLN02829 Probable galacturonosyltransferase
Probab=22.97 E-value=4.1e+02 Score=30.16 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHH
Q 015366 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV 145 (408)
Q Consensus 97 EerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FV 145 (408)
|+-+.+.|++|.|+|+.|..... .++.|......|+.+.+...
T Consensus 208 ~~l~~el~~~i~e~~r~l~~a~~------d~~lp~~~~~~~~~m~~~i~ 250 (639)
T PLN02829 208 PHFTRELRLRIKEVQRVLGDASK------DSDLPKNANEKLKAMEQTLA 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC------CCCCChhHHHHHHHHHHHHH
Confidence 45567889999999999953321 22457777777777766654
No 313
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=22.90 E-value=2e+02 Score=31.51 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
...|.++...+|+++++..+-|+.||..|.+.
T Consensus 423 ~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl 454 (561)
T PF00429_consen 423 TQQYRQLSNALEEDLQALEDSISALQEQLTSL 454 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999887544
No 314
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=22.86 E-value=4.9e+02 Score=24.21 Aligned_cols=68 Identities=12% Similarity=0.023 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHI-FFVHVAAKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 94 ~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq-~FVaLAArla~LHE~Ve~lKE~YL~~r 169 (408)
.+.+-.+.+.++++++.|+.-....+ . ..+.+-..+.+--| .|-+-|..++.+-++.++++++..++.
T Consensus 30 QrL~g~~~e~~~~v~~F~~~A~~~f~--~------~~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~ 98 (167)
T PF11157_consen 30 QRLGGHLDELRRQVAGFQATAARYFG--G------DREALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALA 98 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--C------CHHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666677766665543311 1 13344444433334 778888889999999999988888773
No 315
>PRK12802 flagellin; Provisional
Probab=22.85 E-value=4e+02 Score=25.98 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 015366 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAY 165 (408)
Q Consensus 92 lV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA------Arla~LHE~Ve~lKE~Y 165 (408)
.+.++..++..|.+-+..+...+..... ....+..+...|.++.+.-++.+ ...+.|.++++.++++-
T Consensus 50 ~~~~~~~~~~~~~q~~~n~~~~~s~l~~------ad~~l~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~ei~~l~~~i 123 (282)
T PRK12802 50 IATRQTSQIRGQTQAIKNANDGISIAQT------AEGALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEI 123 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3557777777777666666555433210 01347888999999999888774 37788889999999988
Q ss_pred HHHHh-hcCCCCCcch
Q 015366 166 LADQR-RRGDGSDPFL 180 (408)
Q Consensus 166 L~~rR-r~GD~~DPFa 180 (408)
+..-. ...+.+..|.
T Consensus 124 ~~~an~t~~nG~~lf~ 139 (282)
T PRK12802 124 TRIATSTTLNGKNLLD 139 (282)
T ss_pred HHHHHhCCcCCeeeeC
Confidence 88866 3455666774
No 316
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=22.83 E-value=6e+02 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 015366 146 HVAAKAESIHQY-VETMKTAYLADQRRR 172 (408)
Q Consensus 146 aLAArla~LHE~-Ve~lKE~YL~~rRr~ 172 (408)
.+..+++.+.++ |.-+|+....+.+..
T Consensus 211 ~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l 238 (258)
T cd07655 211 QVFDKCQEFEEKRLDFFKEILLSYHRHL 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555554 666666666666543
No 317
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.61 E-value=3.6e+02 Score=29.97 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 134 PQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 134 ~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
..-|.++.....+-+.|+..|..+-+..|..-++..|+
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~ 430 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRR 430 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44567888888888899999999888777776666553
No 318
>smart00150 SPEC Spectrin repeats.
Probab=22.57 E-value=3.4e+02 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQL 113 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~ 113 (408)
...|++.|..++..|+.+...
T Consensus 40 ~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 40 HEALEAELEAHEERVEALNEL 60 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 456666666666666666554
No 319
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=22.50 E-value=4.4e+02 Score=30.59 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lK 162 (408)
+..-+++.|++++.++++|+.+|+.|.-.. .-.-+|.++ +++-.+-...+=++++.|.+.++++|
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~------F~~kAp~~v---ve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPN------YEDKVPEDV---RKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hhhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888888888874221 111245443 33333333444556666666666665
No 320
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=22.49 E-value=4.2e+02 Score=21.42 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
..|..+-+.|..||+.+...+. +.|-...-+++|+.-...-..+..+.+.|.++
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt----------~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l 56 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGT----------PRDSQELREKIHQLIQKTNQLIKEISELLKKL 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-S----------SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCC----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888876643 23334444444444444433344444444333
No 321
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.46 E-value=2.6e+02 Score=23.21 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
++-+..+-.+++..++.++.+++|||+.+...
T Consensus 34 ~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~iv 65 (97)
T PF09177_consen 34 SEELKWLKRELRNALQSIEWDLEDLEEAVRIV 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999764
No 322
>PRK14163 heat shock protein GrpE; Provisional
Probab=22.41 E-value=3.9e+02 Score=26.21 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-----CCCCcch
Q 015366 153 SIHQYVETMKTAYLADQRRRG-----DGSDPFL 180 (408)
Q Consensus 153 ~LHE~Ve~lKE~YL~~rRr~G-----D~~DPFa 180 (408)
.|.+.|+.+...++....++| -..+||+
T Consensus 111 ~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FD 143 (214)
T PRK14163 111 ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFD 143 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCC
Confidence 588888998888888887644 2346773
No 323
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=22.35 E-value=5.3e+02 Score=22.57 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEEL--EQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (408)
Q Consensus 93 V~~FEerL~~yRQqIEEL--Er~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~r 169 (408)
+.+....++++.++|+++ +++.................+.|...++.++..+-.|-.+|..=|++++.+..+.-+.+
T Consensus 35 l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 35 LKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 677777777777777653 22221111000000000124555666666666666666666666666666655555443
No 324
>PRK14140 heat shock protein GrpE; Provisional
Probab=22.32 E-value=2.9e+02 Score=26.50 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 147 VAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 147 LAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
+-.+++.+.+++..++..|=|+|||
T Consensus 49 l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 49 LEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455554
No 325
>PRK14692 lagellar hook-associated protein FlgL; Provisional
Probab=22.28 E-value=2.9e+02 Score=31.73 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYL 166 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA------Arla~LHE~Ve~lKE~YL 166 (408)
++.-..++.+|++-|+.....|.... .+++.+...|+++.+..|+.| ...+.|.++++.++++.+
T Consensus 52 L~s~i~~l~Qy~~Ni~~A~s~L~~tE---------taL~sI~~iLqr~ReLaVqAaNGT~S~~dR~AIA~El~~L~eqLl 122 (749)
T PRK14692 52 LEYEIKTLEQVKESTSRAQEMTQNSM---------KALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIV 122 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777775431 358889999999999888765 456789999999999998
Q ss_pred HHHh
Q 015366 167 ADQR 170 (408)
Q Consensus 167 ~~rR 170 (408)
..-.
T Consensus 123 ~iAN 126 (749)
T PRK14692 123 QLAN 126 (749)
T ss_pred HHhc
Confidence 8855
No 326
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.27 E-value=6.9e+02 Score=30.99 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 015366 93 VARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~ 115 (408)
..++|+..++.+.-|+++-..|.
T Consensus 1463 ~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666666553
No 327
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.26 E-value=4.5e+02 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 134 PQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 134 ~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
...+..+.+-...+-.+++.++++.-.++..|=|+|||
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR 81 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKR 81 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444555555555666666666666666665
No 328
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=22.21 E-value=4.4e+02 Score=27.93 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH----HHHHHHH-HHHHH
Q 015366 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA----AKAESIH-QYVET 160 (408)
Q Consensus 86 SpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA----Arla~LH-E~Ve~ 160 (408)
.+.++++=+...+.....+++|++++.-|..... .-...|..+|++..+..+.+| ..|+.+- .++.+
T Consensus 67 ~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~--------~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~ 138 (473)
T PF14643_consen 67 IQDLLELWDEVAEHSQKRKQWIKELDEDLEELEK--------ERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAME 138 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 5677777788888888888999999888854432 113566777777777777665 4455543 33777
Q ss_pred HHHHHHHHHhh
Q 015366 161 MKTAYLADQRR 171 (408)
Q Consensus 161 lKE~YL~~rRr 171 (408)
+++..|..||.
T Consensus 139 iN~~ll~Nrra 149 (473)
T PF14643_consen 139 INQALLGNRRA 149 (473)
T ss_pred HHHHHHHhHHH
Confidence 77777777773
No 329
>PF13166 AAA_13: AAA domain
Probab=22.17 E-value=8.6e+02 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILL 116 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s 116 (408)
.++..+..++..+..++..|+.+.+.|..
T Consensus 319 ~~~~~~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 319 EFEEDKEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556888888888888888888777743
No 330
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=22.11 E-value=1.2e+02 Score=28.41 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHH
Q 015366 84 KPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV 147 (408)
Q Consensus 84 ~PSpFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaL 147 (408)
.|.+= ..+|.=-|.+++..|+++++||+.|...-. .-.+-..+++++|+.-++|
T Consensus 34 ~ph~~-~~avSL~erQ~~~LR~~~~~L~~~l~~Li~---------~Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 34 LPHPS-GGAVSLVERQLERLRERNRQLEEQLEELIE---------NARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 34442 458888999999999999999999964421 1234455677777766655
No 331
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=22.07 E-value=5.1e+02 Score=26.37 Aligned_cols=61 Identities=10% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
+...|+++-.-++.....||++|+.+-.. +. . .++..++ .++..+.+.+.++|+..+..
T Consensus 137 ld~iVd~~ad~lE~~~~~ld~ls~~if~~----~~--~----~~~~~~l-----------~~i~~l~~~~~~~r~~l~~~ 195 (316)
T PRK11085 137 FETKIEQLADEIENIYSDLEKLSRVIMEG----HQ--G----DEYDEAL-----------STLAELEDIGWKVRLCLMDT 195 (316)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccC----CC--c----hhHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 56778888888899999999999988421 11 0 1222222 34566666666777776666
Q ss_pred Hh
Q 015366 169 QR 170 (408)
Q Consensus 169 rR 170 (408)
+|
T Consensus 196 ~r 197 (316)
T PRK11085 196 QR 197 (316)
T ss_pred HH
Confidence 66
No 332
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.06 E-value=7.3e+02 Score=24.03 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--C--CCcccccchHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSS--S--HGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S--~--itssaPQ~L~~aL~n~Hq~FVaLAArla 152 (408)
..+++++++|.++.-.-..++.+.|...++.... + ...+....|...+..+-.-|..++...+
T Consensus 42 ~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~~~~s~~~~ 108 (246)
T cd07597 42 RVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHFQLLSDLSE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777665431110 0 0112346677777777777766655543
No 333
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=6.3e+02 Score=25.57 Aligned_cols=66 Identities=9% Similarity=0.119 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l 161 (408)
|+++....-.-+....+++-.||+.+...+.++- +|. |...++..+..=.++...+..+--++.++
T Consensus 19 ~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~d------s~~-lr~kl~~~~~~~~~~vkdt~~~lke~~~~ 84 (269)
T KOG0811|consen 19 FQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSD------SPE-LRDKLHQERLNANQLVKDTSALLKEIDTL 84 (269)
T ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccc------cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888999999999999987765332 254 77777777777666655444444333333
No 334
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=21.79 E-value=3.1e+02 Score=25.08 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPD 119 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~ 119 (408)
+|-+.|++-+.+-++||+-||+++...+.
T Consensus 33 eLk~~l~~H~~eT~~qi~rLe~if~~lg~ 61 (147)
T cd07909 33 ELKEAFESHLEETEGQVERLEQIFESLGE 61 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999987643
No 335
>COG5283 Phage-related tail protein [Function unknown]
Probab=21.79 E-value=5e+02 Score=31.63 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=31.1
Q ss_pred ChhhHHHHHHHHHHHHHHhhchHHHHHhhhhcccccc
Q 015366 1 MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFL 37 (408)
Q Consensus 1 ~eR~k~~lqeL~~~V~~mlrntE~AvRsf~~lRprf~ 37 (408)
||.+|.-+++++..|++.=|+|..--..|+.+--+++
T Consensus 66 meK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~t 102 (1213)
T COG5283 66 MEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYT 102 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999888888886666555
No 336
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=21.43 E-value=4.5e+02 Score=21.37 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCC---cc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDR-NSSSHG---SS---LLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (408)
Q Consensus 88 FF~elV~~FEerL~~yRQqIEELEr~L~s~s~~-~~S~it---ss---aPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~ 160 (408)
-|-.+..-|++...+.+..++++...+...++. ..+... .. ...++...|+..-+.--.+...+..+++..++
T Consensus 29 ~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~ 108 (142)
T PF00210_consen 29 NFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPEWTDPREALEAALEDEKEIIEEYRELIKLAEK 108 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788888888899999988888666431 111000 00 01355666666666666666666666666666
Q ss_pred HHHHHHH
Q 015366 161 MKTAYLA 167 (408)
Q Consensus 161 lKE~YL~ 167 (408)
.++..+.
T Consensus 109 ~~D~~t~ 115 (142)
T PF00210_consen 109 EGDPETA 115 (142)
T ss_dssp TTSHHHH
T ss_pred cCCHHHH
Confidence 5444443
No 337
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=21.42 E-value=4.3e+02 Score=23.88 Aligned_cols=29 Identities=34% Similarity=0.258 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPD 119 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~ 119 (408)
+|-+.||+.+.+-++||+-||+++...+.
T Consensus 35 ~L~~~l~~h~~eT~~q~~rLe~~~~~lg~ 63 (159)
T PF05974_consen 35 ELKAALEEHLEETEQQIERLEQIFEALGA 63 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45788999999999999999999988753
No 338
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.39 E-value=3.6e+02 Score=25.57 Aligned_cols=78 Identities=10% Similarity=0.179 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
|.++.++||+.=.+.++.++++.+.-.. ....+|-.++.++-..+-+ ......+++.|+.....+++.
T Consensus 50 ~lR~~AEfeN~rKR~~rE~e~~~~~a~~-----------~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~k~l~~~ 117 (177)
T PRK14156 50 YLRAHAEMQNIQRRANEERQQLQRYRSQ-----------DLAKAILPSLDNLERALAV-EGLTDDVKKGLEMVQESLIQA 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhC-cccchhHHHHHHHHHHHHHHH
Confidence 3455777777776666666665554421 1234455555555555432 234467889999999999999
Q ss_pred HhhcC----CCCCcc
Q 015366 169 QRRRG----DGSDPF 179 (408)
Q Consensus 169 rRr~G----D~~DPF 179 (408)
..+.| +. .||
T Consensus 118 L~~~GV~~i~~-~~F 131 (177)
T PRK14156 118 LKEEGVEEVAV-DSF 131 (177)
T ss_pred HHHCCCeecCC-CCC
Confidence 88766 44 488
No 339
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=21.37 E-value=3.2e+02 Score=27.82 Aligned_cols=83 Identities=19% Similarity=0.365 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
Q 015366 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY------------VETMKTAY 165 (408)
Q Consensus 98 erL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~------------Ve~lKE~Y 165 (408)
++|.++.++|++|++.|... ..+|..-|.. +++|+.++..+..|-.. ++.-|++|
T Consensus 2 ~~l~~l~~~i~~L~~k~~~~------------f~~lk~fi~e-~~f~~~i~~~~~~L~~~m~d~~~~~~~~s~~~F~~~y 68 (345)
T PF05075_consen 2 EKLKELEKKIKELSEKMSAH------------FDDLKAFITE-NNFYMEIISPASTLMKYMRDCLKHPGKESIENFREAY 68 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHH------------HHHHHHHcch-hhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 57889999999999998533 5677776665 67777777777776554 44445554
Q ss_pred HHH---------Hhh-cCCCCCcchhh------hHHHHHHHHHh
Q 015366 166 LAD---------QRR-RGDGSDPFLEA------DRRETARQEAA 193 (408)
Q Consensus 166 L~~---------rRr-~GD~~DPFaEA------dRrE~Arkraa 193 (408)
-.. ... .-|.+||..-| ++++.=+||..
T Consensus 69 ~~~~Pl~l~y~l~s~L~~~~TNPl~~am~ad~~~~~~tf~kW~~ 112 (345)
T PF05075_consen 69 EKNSPLELAYTLMSLLEQKSTNPLKMAMDADKLKTKATFEKWKK 112 (345)
T ss_pred hcCCHHHHHHHHHHHHcccCCCHHHHHHhcCccchHHHHHHHHH
Confidence 322 001 45789998655 44566666664
No 340
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=21.29 E-value=4.2e+02 Score=20.92 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 134 PQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 134 ~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
..-+.+...+...|...+..+...++.++...-..+..
T Consensus 44 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 44 VAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777666653
No 341
>PRK14149 heat shock protein GrpE; Provisional
Probab=21.27 E-value=4e+02 Score=25.69 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAYL 166 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLA--Arla~LHE~Ve~lKE~YL 166 (408)
|.++.++||++-.+.++.++++-..-.. ....+|-.++.++-...-+.- .....|.+.|+...+.++
T Consensus 59 ~lR~~AefEN~rKR~~kE~e~~~~~a~~-----------~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~ 127 (191)
T PRK14149 59 YLRVHADFENVKKRLERDKSMALEYAYE-----------KIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLH 127 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 4566777777777777777766554321 123444455555554443221 245678899999999999
Q ss_pred HHHhhcC----CCCCcch
Q 015366 167 ADQRRRG----DGSDPFL 180 (408)
Q Consensus 167 ~~rRr~G----D~~DPFa 180 (408)
+...+.| +...+|+
T Consensus 128 ~vL~k~GV~~I~~~G~FD 145 (191)
T PRK14149 128 EVLARHGIEGIECLEEFD 145 (191)
T ss_pred HHHHHCCCEEeCCCCCCC
Confidence 9988655 3345673
No 342
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=21.19 E-value=1.5e+02 Score=26.48 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.+++++.++++....+.|.+||+++.+.
T Consensus 83 ~~~l~~~~~~~~~~e~Rl~~mE~yVTS~ 110 (121)
T TIGR02978 83 RQALREVKREFRDLERRLRNMERYVTSD 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4568888899999999999999999654
No 343
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=21.09 E-value=1.6e+02 Score=22.58 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcCCCCCcc
Q 015366 151 AESIHQYVETMKTAYLADQ--RRRGDGSDPF 179 (408)
Q Consensus 151 la~LHE~Ve~lKE~YL~~r--Rr~GD~~DPF 179 (408)
.+.|.+++.++|+.|.++| ...|...||-
T Consensus 8 ~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~~ 38 (57)
T cd00427 8 DEELQEKLDELKKELFNLRFQKATGQLENPH 38 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCcH
Confidence 4789999999999999998 4577777764
No 344
>PF12423 KIF1B: Kinesin protein 1B; InterPro: IPR022140 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. KIF1B is an anterograde motor for transport of mitochondria in axons of neuronal cells.
Probab=21.01 E-value=60 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHh-------hcCCCCCcchhh
Q 015366 155 HQYVETMKTAYLADQR-------RRGDGSDPFLEA 182 (408)
Q Consensus 155 HE~Ve~lKE~YL~~rR-------r~GD~~DPFaEA 182 (408)
.+|+..|+|-|-++.. ......|||-|.
T Consensus 2 ~nRl~~MRemYq~~~~~~~~~~~~~~~~~DPF~e~ 36 (45)
T PF12423_consen 2 ENRLFDMREMYQQYKENDFPEYDQHFKEDDPFYEP 36 (45)
T ss_pred ccHHHHHHHHHHHHHhcCCccccccCCCCCCCCCC
Confidence 4678888888866621 245568999876
No 345
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=20.95 E-value=1.2e+02 Score=27.60 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPD 119 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~ 119 (408)
.+-+.++.+++.++++||+++++.+.+..+
T Consensus 18 ~~q~~~~~~q~~q~~~Ql~~~k~q~~s~tG 47 (195)
T PF07996_consen 18 AQQLAQWKQQLEQLKQQLQQAKQQYNSLTG 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456888999999999999999999865443
No 346
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=20.92 E-value=1.5e+02 Score=23.97 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcCCCCCcc
Q 015366 151 AESIHQYVETMKTAYLADQ--RRRGDGSDPF 179 (408)
Q Consensus 151 la~LHE~Ve~lKE~YL~~r--Rr~GD~~DPF 179 (408)
+++|.+++.++|+.|.++| ...|.-.||-
T Consensus 14 ~~eL~~~l~elk~elf~LRfq~atgql~n~~ 44 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLKKATRQNFKPH 44 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccChH
Confidence 5788999999999999998 4688777774
No 347
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=20.89 E-value=8.4e+02 Score=24.29 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHhhcC---CCCCc-chhh
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETM---KTAYL-ADQRRRG---DGSDP-FLEA 182 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~l---KE~YL-~~rRr~G---D~~DP-FaEA 182 (408)
-++|...|.++-|..+.+-+++..=.++.+.- ++.-. +.++..| |.+|| |.|+
T Consensus 134 e~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~em 194 (225)
T KOG4848|consen 134 EAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEM 194 (225)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHH
Confidence 47888888888888887766655444332221 22222 2244566 66776 5555
No 348
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.88 E-value=1.8e+02 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLD 117 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~ 117 (408)
.+.++++.++.+..++.|+-||+.|..+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd~e 68 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLERILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4557888889999999999999999654
No 349
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.88 E-value=7.4e+02 Score=23.68 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 90 ~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
..-+++-|+|+..+...|.+||.-|... ...|..+-........+...+.++|..+++.+.+.
T Consensus 126 E~~Le~aEeR~e~~E~ki~eLE~el~~~----------------~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 126 EQELERAEERAEAAESKIKELEEELKSV----------------GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHH----------------HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777888888887777543 23344444455555556666666666666665554
No 350
>PRK10869 recombination and repair protein; Provisional
Probab=20.84 E-value=4.7e+02 Score=28.39 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 143 FFVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 143 ~FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.+-..-.+++.|.++++++++.|+.....
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~ 363 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQK 363 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556778888888888888887654
No 351
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=20.83 E-value=8.4e+02 Score=24.30 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 015366 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY-VETMKTAYLADQRR 171 (408)
Q Consensus 93 V~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~-Ve~lKE~YL~~rRr 171 (408)
++++.++++.+++..++-+.--.. .+++|-..-..-.+-..++..+.+.++++ |.-+|+.++...+.
T Consensus 170 ~eK~~~k~~k~~~~~~~sk~~Y~~------------~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~ 237 (258)
T cd07680 170 QKKLQDKVDKCKQDVQKTQEKYEK------------VLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888777665531 25566666555566666788888888886 89999999999886
Q ss_pred c
Q 015366 172 R 172 (408)
Q Consensus 172 ~ 172 (408)
+
T Consensus 238 l 238 (258)
T cd07680 238 L 238 (258)
T ss_pred c
Confidence 5
No 352
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.67 E-value=1.7e+02 Score=28.01 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 136 VISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 136 aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
....+...+-.|..++..||+.|++.|+.-...
T Consensus 86 ~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ 118 (247)
T PF06705_consen 86 KQEQLQSRLDSLNDRIEALEEEIQEEKEERPQD 118 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444455566678888888888877776654443
No 353
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=20.66 E-value=3.5e+02 Score=23.58 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 135 ~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
..++++..|...+-.|+..|+..++++|...-..
T Consensus 15 ~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~ 48 (134)
T PF08336_consen 15 ELISNLRNYIEELQEKLDTLKRFLDEMKREHEKA 48 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666676666667777766666666554433
No 354
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=20.66 E-value=1.7e+02 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCCCCcc
Q 015366 151 AESIHQYVETMKTAYLADQR--RRGDGSDPF 179 (408)
Q Consensus 151 la~LHE~Ve~lKE~YL~~rR--r~GD~~DPF 179 (408)
.++|.+++.++|+.|.++|= ..|...||-
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~ 39 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKATGQLENPH 39 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 57899999999999999876 478777775
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=20.66 E-value=4.9e+02 Score=28.30 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~ 115 (408)
..+ +++.|+++..+.++|++||..|.
T Consensus 567 ~~~-~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 567 QRE-LEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 88899999999999999998884
No 356
>PRK00846 hypothetical protein; Provisional
Probab=20.59 E-value=5.2e+02 Score=21.73 Aligned_cols=6 Identities=50% Similarity=0.523 Sum_probs=2.2
Q ss_pred HHHHHH
Q 015366 105 QWIEEL 110 (408)
Q Consensus 105 QqIEEL 110 (408)
..||+|
T Consensus 27 ~tIe~L 32 (77)
T PRK00846 27 QALTEL 32 (77)
T ss_pred HHHHHH
Confidence 333333
No 357
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.51 E-value=4e+02 Score=26.04 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 146 HVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 146 aLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
.+-.+++.++++...++..|=|+|||
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666665
No 358
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.44 E-value=7.8e+02 Score=25.04 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015366 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (408)
Q Consensus 91 elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rR 170 (408)
+-+-+.++.+...|..+-.+++.+..... +.. .+.+....++.+.+=...+...++.++|++..+.+.|++..-
T Consensus 176 ~~i~~l~~~~~~~r~~l~~~~r~l~~l~~--~~~----~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~ 249 (316)
T PRK11085 176 STLAELEDIGWKVRLCLMDTQRALNFLVR--KAR----LPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFIN 249 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44778888888888888888887754322 110 122222334444444555677779999999999999998743
No 359
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.36 E-value=4.8e+02 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=16.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 130 LQSLPQVISNVHIFFVHVAAKAESIHQY 157 (408)
Q Consensus 130 PQ~L~~aL~n~Hq~FVaLAArla~LHE~ 157 (408)
...|..++..+.+....+..+|+...+.
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~ 100 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKY 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555444
No 360
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=20.35 E-value=9.8e+02 Score=24.87 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 015366 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSS--SHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY------VET 160 (408)
Q Consensus 89 F~elV~~FEerL~~yRQqIEELEr~L~s~s~~~~S--~itssaPQ~L~~aL~n~Hq~FVaLAArla~LHE~------Ve~ 160 (408)
|-+.+..+|.++.+.+.+-|+|-+.+.-+..+|-- ..-+...-.|..-=+++++.....|=-=-+|.|+ |+.
T Consensus 89 ~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqR 168 (333)
T KOG1853|consen 89 FYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQR 168 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHhhccCCccccCCCCCCCCCcccCCcccccCCCccCCCcccccc-cCCC
Q 015366 161 MKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVIS-ASSG 239 (408)
Q Consensus 161 lKE~YL~~rRr~GD~~DPFaEAdRrE~Arkraaa~RV~Pt~~lPAp~QP~tq~a~~~~sa~~~~ts~p~~s~~ps-~s~~ 239 (408)
+|+.-..+|+. -+-..+|.+.++.|.|.- +-+--.- ++-.+.-+.|+ ++++
T Consensus 169 LkdEardlrqe------------lavr~kq~E~pR~~~Pss-~~~er~d---------------tavqa~~slP~tP~~~ 220 (333)
T KOG1853|consen 169 LKDEARDLRQE------------LAVRTKQTERPRIVEPSS-VEAERTD---------------TAVQAPESLPDTPSPG 220 (333)
T ss_pred HHHHHHHHHHH------------HHHHHhhccCCCcCCccc-hhhhhcc---------------hhhcCcccCCCCCCCC
Q ss_pred CCCcccccCCCCCCccccccccc-cCCCCCC
Q 015366 240 GGLSLFSTPSSAPASSMSSSLFA-TPATSAS 269 (408)
Q Consensus 240 s~~s~f~tpssaps~t~s~slF~-tp~t~~~ 269 (408)
+.-.-|.+|-+-+ ..|| +|-||..
T Consensus 221 gs~~~f~~pr~~d------~~~g~~pltp~a 245 (333)
T KOG1853|consen 221 GSKEEFKMPRSED------VFMGDVPLTPDA 245 (333)
T ss_pred CchhhcCCCcccc------cccCCCCCCchh
No 361
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.29 E-value=5.5e+02 Score=28.57 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015366 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (408)
Q Consensus 132 ~L~~aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~ 168 (408)
++....+++.+..-.+.+|++.|..++++...+.-.+
T Consensus 368 e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L 404 (656)
T PRK06975 368 ELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQAL 404 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666665555544443333
No 362
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.25 E-value=8.1e+02 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015366 146 HVAAKAESIHQYVETMKTAYLA 167 (408)
Q Consensus 146 aLAArla~LHE~Ve~lKE~YL~ 167 (408)
.+-.+++.+..+++.++...-+
T Consensus 207 ~~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 207 EAQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 363
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=20.21 E-value=1.7e+02 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCCCCcc
Q 015366 151 AESIHQYVETMKTAYLADQR--RRGDGSDPF 179 (408)
Q Consensus 151 la~LHE~Ve~lKE~YL~~rR--r~GD~~DPF 179 (408)
.++|.+++.++|+.|.++|= ..|...||-
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~ 41 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKATGQLENTH 41 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcCcH
Confidence 57889999999999999984 467667765
No 364
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.13 E-value=3.9e+02 Score=25.19 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015366 144 FVHVAAKAESIHQYVETMKTAYLADQRR 171 (408)
Q Consensus 144 FVaLAArla~LHE~Ve~lKE~YL~~rRr 171 (408)
...+-.+++.+.++.-.++..|=|+|||
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR 56 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRR 56 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554
No 365
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.08 E-value=6.7e+02 Score=24.14 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----------CCCCCcccccchHHHHHHHHHHHHHHH----HHHH
Q 015366 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN----------SSSHGSSLLQSLPQVISNVHIFFVHVA----AKAE 152 (408)
Q Consensus 87 pFF~elV~~FEerL~~yRQqIEELEr~L~s~s~~~----------~S~itssaPQ~L~~aL~n~Hq~FVaLA----Arla 152 (408)
-|..+-|+..|++|...++.++.+=++..-+.++. .... =.+|..+|+++-+.+-.+. ++++
T Consensus 7 k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E----~~~L~~~L~~lae~~~~i~d~~q~qv~ 82 (211)
T cd07598 7 KFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE----NPSLKQGLKNFAECLAALQDYRQAEVE 82 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888777777666542222100 0000 1356777777776666554 4555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 015366 153 SIHQYVETMKTAYLADQR 170 (408)
Q Consensus 153 ~LHE~Ve~lKE~YL~~rR 170 (408)
.+--+|.+-=..|...++
T Consensus 83 ~l~~~v~epLk~Y~~l~k 100 (211)
T cd07598 83 RLEAKVVQPLALYGTICK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555556777665
No 366
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=20.02 E-value=7.6e+02 Score=23.48 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCcchhhhH
Q 015366 136 VISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR----GDGSDPFLEADR 184 (408)
Q Consensus 136 aL~n~Hq~FVaLAArla~LHE~Ve~lKE~YL~~rRr~----GD~~DPFaEAdR 184 (408)
.+...+.-++.+-.+.+.+.+.+.+.+..=-+.++++ ++..++..++.+
T Consensus 100 ~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~ 152 (240)
T PF12795_consen 100 QLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQR 152 (240)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHH
Confidence 4444444444444445555555555555544444431 233366666644
Done!