Query 015368
Match_columns 408
No_of_seqs 307 out of 3279
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 3.9E-52 8.5E-57 382.8 28.6 345 54-405 23-382 (493)
2 PTZ00102 disulphide isomerase; 100.0 4.2E-44 9.1E-49 348.6 36.1 329 56-406 32-374 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.7E-43 3.7E-48 343.7 33.8 339 57-406 2-363 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 6E-39 1.3E-43 270.4 22.8 311 61-380 1-323 (375)
5 KOG4277 Uncharacterized conser 100.0 4.5E-34 9.8E-39 240.5 16.3 292 72-378 42-353 (468)
6 PF01216 Calsequestrin: Calseq 100.0 4.7E-30 1E-34 221.5 29.8 321 53-380 31-372 (383)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.7E-24 3.7E-29 164.9 12.3 102 55-156 8-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1E-23 2.2E-28 159.9 11.8 99 57-155 2-100 (101)
9 KOG0910 Thioredoxin-like prote 99.9 2E-23 4.4E-28 161.1 11.5 106 56-161 43-149 (150)
10 PRK10996 thioredoxin 2; Provis 99.9 2E-22 4.3E-27 161.0 16.1 133 28-160 7-139 (139)
11 PF00085 Thioredoxin: Thioredo 99.9 3.9E-22 8.4E-27 152.1 15.2 102 58-159 1-103 (103)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.5E-22 3.2E-27 154.5 12.0 100 57-156 2-104 (104)
13 cd03065 PDI_b_Calsequestrin_N 99.9 3.3E-22 7.1E-27 153.2 13.1 106 54-160 7-119 (120)
14 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.5E-22 5.4E-27 154.2 12.0 100 57-156 2-108 (108)
15 PTZ00443 Thioredoxin domain-co 99.9 2.4E-21 5.1E-26 165.1 16.0 106 56-161 30-140 (224)
16 cd02994 PDI_a_TMX PDIa family, 99.9 1.2E-21 2.7E-26 148.5 12.8 99 57-158 2-101 (101)
17 COG3118 Thioredoxin domain-con 99.9 8.5E-22 1.8E-26 168.6 13.0 107 56-162 23-132 (304)
18 PF13848 Thioredoxin_6: Thiore 99.9 2.1E-21 4.6E-26 164.6 14.8 177 188-374 1-184 (184)
19 PHA02278 thioredoxin-like prot 99.9 2.9E-21 6.2E-26 144.8 13.1 93 63-155 4-100 (103)
20 cd03005 PDI_a_ERp46 PDIa famil 99.9 3E-21 6.6E-26 146.8 12.2 98 58-156 2-102 (102)
21 cd02963 TRX_DnaJ TRX domain, D 99.9 3.4E-21 7.3E-26 148.1 12.4 100 59-158 7-110 (111)
22 PRK09381 trxA thioredoxin; Pro 99.9 9.4E-21 2E-25 145.8 14.4 106 55-160 2-108 (109)
23 cd02954 DIM1 Dim1 family; Dim1 99.9 2.5E-21 5.4E-26 145.7 10.8 90 63-152 2-93 (114)
24 KOG0191 Thioredoxin/protein di 99.9 2.4E-20 5.2E-25 175.4 19.6 276 66-352 40-353 (383)
25 cd03002 PDI_a_MPD1_like PDI fa 99.9 6.1E-21 1.3E-25 147.0 12.0 99 58-156 2-108 (109)
26 cd02956 ybbN ybbN protein fami 99.9 1.1E-20 2.5E-25 141.8 12.2 93 65-157 2-96 (96)
27 TIGR02187 GlrX_arch Glutaredox 99.9 1.2E-19 2.7E-24 156.6 20.3 182 73-262 19-214 (215)
28 cd02999 PDI_a_ERp44_like PDIa 99.8 7.7E-21 1.7E-25 142.8 11.0 84 71-156 16-100 (100)
29 cd02985 TRX_CDSP32 TRX family, 99.8 2.8E-20 6E-25 141.0 13.2 94 62-157 2-100 (103)
30 cd02997 PDI_a_PDIR PDIa family 99.8 2.3E-20 4.9E-25 142.6 12.3 99 58-156 2-104 (104)
31 cd02948 TRX_NDPK TRX domain, T 99.8 3.7E-20 7.9E-25 140.2 13.1 96 61-158 5-101 (102)
32 cd03001 PDI_a_P5 PDIa family, 99.8 3.9E-20 8.5E-25 141.0 12.7 99 58-156 2-102 (103)
33 TIGR01126 pdi_dom protein disu 99.8 3.1E-20 6.8E-25 141.3 11.8 99 61-159 1-101 (102)
34 cd02962 TMX2 TMX2 family; comp 99.8 1.5E-19 3.4E-24 144.7 15.8 90 56-145 28-126 (152)
35 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.5E-20 5.4E-25 140.8 10.1 99 57-159 2-115 (116)
36 cd02993 PDI_a_APS_reductase PD 99.8 6.8E-20 1.5E-24 140.6 11.7 100 57-156 2-109 (109)
37 cd02965 HyaE HyaE family; HyaE 99.8 9.3E-20 2E-24 136.1 12.0 97 57-153 11-109 (111)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.1E-19 4.5E-24 137.2 10.8 98 58-156 2-104 (104)
39 cd03000 PDI_a_TMX3 PDIa family 99.8 4.4E-19 9.5E-24 135.0 11.7 94 64-159 7-103 (104)
40 cd02998 PDI_a_ERp38 PDIa famil 99.8 4.8E-19 1E-23 135.5 10.9 99 58-156 2-105 (105)
41 TIGR01068 thioredoxin thioredo 99.8 1.3E-18 2.8E-23 132.1 13.1 100 61-160 1-101 (101)
42 cd02950 TxlA TRX-like protein 99.8 9.6E-19 2.1E-23 140.1 12.9 98 64-161 11-111 (142)
43 PLN00410 U5 snRNP protein, DIM 99.8 1.4E-18 3.1E-23 136.0 13.4 99 62-160 10-120 (142)
44 cd02961 PDI_a_family Protein D 99.8 7.8E-19 1.7E-23 133.2 10.5 97 60-156 2-101 (101)
45 cd02953 DsbDgamma DsbD gamma f 99.8 6E-19 1.3E-23 134.4 9.7 93 64-156 2-103 (104)
46 cd02989 Phd_like_TxnDC9 Phosdu 99.8 3.3E-18 7.2E-23 131.4 13.7 90 56-146 4-94 (113)
47 KOG0907 Thioredoxin [Posttrans 99.8 1.6E-18 3.5E-23 129.7 11.3 86 71-158 19-104 (106)
48 cd02957 Phd_like Phosducin (Ph 99.8 3.2E-18 7E-23 132.1 12.6 89 56-146 4-95 (113)
49 cd02949 TRX_NTR TRX domain, no 99.8 6E-18 1.3E-22 126.9 12.3 88 70-157 10-97 (97)
50 cd02984 TRX_PICOT TRX domain, 99.8 6.7E-18 1.5E-22 127.0 12.2 93 63-156 2-96 (97)
51 PTZ00051 thioredoxin; Provisio 99.7 2E-17 4.3E-22 124.6 12.0 90 62-153 7-96 (98)
52 TIGR00424 APS_reduc 5'-adenyly 99.7 2.4E-17 5.1E-22 154.5 14.0 108 51-158 346-461 (463)
53 cd02992 PDI_a_QSOX PDIa family 99.7 3.7E-17 8E-22 126.0 11.7 96 57-152 2-108 (114)
54 cd02986 DLP Dim1 family, Dim1- 99.7 4.7E-17 1E-21 121.3 11.4 77 64-140 3-81 (114)
55 PLN02309 5'-adenylylsulfate re 99.7 3.9E-17 8.4E-22 153.0 13.3 108 52-159 341-456 (457)
56 TIGR01295 PedC_BrcD bacterioci 99.7 9.9E-17 2.1E-21 124.6 13.2 100 56-157 6-121 (122)
57 PRK15412 thiol:disulfide inter 99.7 2.1E-16 4.4E-21 133.2 15.9 87 71-160 66-176 (185)
58 cd02951 SoxW SoxW family; SoxW 99.7 7.7E-17 1.7E-21 127.1 12.1 98 64-161 4-120 (125)
59 PTZ00102 disulphide isomerase; 99.7 8.7E-17 1.9E-21 156.9 13.6 115 50-164 351-469 (477)
60 KOG1731 FAD-dependent sulfhydr 99.7 2.1E-16 4.5E-21 146.2 14.9 224 54-281 37-293 (606)
61 cd02987 Phd_like_Phd Phosducin 99.7 2.5E-16 5.4E-21 130.3 13.2 102 55-158 61-173 (175)
62 cd02947 TRX_family TRX family; 99.7 2.8E-16 6.1E-21 116.9 12.2 91 65-156 2-92 (93)
63 cd02975 PfPDO_like_N Pyrococcu 99.7 2.2E-16 4.7E-21 121.4 11.6 94 66-160 15-110 (113)
64 KOG0190 Protein disulfide isom 99.7 5.1E-17 1.1E-21 151.0 8.6 115 45-161 354-474 (493)
65 PTZ00062 glutaredoxin; Provisi 99.7 2.5E-15 5.4E-20 126.1 17.9 162 62-236 5-174 (204)
66 PRK03147 thiol-disulfide oxido 99.7 1.8E-15 3.9E-20 126.7 13.4 103 57-159 45-171 (173)
67 KOG0908 Thioredoxin-like prote 99.6 1E-15 2.2E-20 126.9 10.3 99 62-162 8-108 (288)
68 PRK14018 trifunctional thiored 99.6 2.4E-15 5.1E-20 142.9 14.3 101 57-159 42-172 (521)
69 TIGR02738 TrbB type-F conjugat 99.6 6.7E-15 1.5E-19 118.4 13.0 86 72-159 49-152 (153)
70 cd02982 PDI_b'_family Protein 99.6 4.7E-15 1E-19 112.8 10.2 88 72-159 11-102 (103)
71 cd02988 Phd_like_VIAF Phosduci 99.6 9.2E-15 2E-19 122.5 12.7 99 55-157 81-189 (192)
72 TIGR00385 dsbE periplasmic pro 99.6 1.6E-14 3.5E-19 120.4 14.2 88 70-160 60-171 (173)
73 TIGR00411 redox_disulf_1 small 99.6 1.2E-14 2.5E-19 105.6 11.0 80 76-159 2-81 (82)
74 PRK13728 conjugal transfer pro 99.6 2.9E-14 6.2E-19 116.5 11.8 84 77-162 73-173 (181)
75 cd02952 TRP14_like Human TRX-r 99.6 1.4E-14 3E-19 110.7 9.2 77 62-138 8-101 (119)
76 cd02959 ERp19 Endoplasmic reti 99.6 5.9E-15 1.3E-19 113.9 6.8 97 64-160 10-113 (117)
77 cd03010 TlpA_like_DsbE TlpA-li 99.5 6.3E-14 1.4E-18 110.9 10.8 87 64-152 16-126 (127)
78 TIGR01130 ER_PDI_fam protein d 99.5 1.3E-11 2.8E-16 120.2 28.8 308 57-380 112-458 (462)
79 cd03008 TryX_like_RdCVF Trypar 99.5 6.1E-14 1.3E-18 111.4 9.5 71 72-142 24-128 (146)
80 cd03072 PDI_b'_ERp44 PDIb' fam 99.5 7.9E-14 1.7E-18 106.3 8.4 106 268-379 1-111 (111)
81 PF13098 Thioredoxin_2: Thiore 99.5 7.3E-14 1.6E-18 107.9 8.1 86 71-156 3-112 (112)
82 cd02955 SSP411 TRX domain, SSP 99.5 3.1E-13 6.7E-18 104.6 10.6 97 62-158 4-117 (124)
83 cd03009 TryX_like_TryX_NRX Try 99.5 2.9E-13 6.3E-18 107.7 9.4 71 71-141 16-114 (131)
84 KOG0191 Thioredoxin/protein di 99.5 4.8E-13 1E-17 126.0 11.6 182 57-241 145-355 (383)
85 PF13905 Thioredoxin_8: Thiore 99.4 6.4E-13 1.4E-17 99.3 9.6 66 73-138 1-94 (95)
86 TIGR01626 ytfJ_HI0045 conserve 99.4 1.1E-12 2.4E-17 108.0 11.7 89 65-156 51-176 (184)
87 cd02964 TryX_like_family Trypa 99.4 4.1E-13 8.9E-18 106.8 8.9 70 72-141 16-114 (132)
88 TIGR00412 redox_disulf_2 small 99.4 8.4E-13 1.8E-17 93.5 9.3 73 77-156 2-75 (76)
89 PHA02125 thioredoxin-like prot 99.4 1.3E-12 2.8E-17 92.5 10.0 70 77-155 2-72 (75)
90 TIGR02740 TraF-like TraF-like 99.4 1.6E-12 3.4E-17 115.3 12.4 88 72-161 165-265 (271)
91 PLN02399 phospholipid hydroper 99.4 1.3E-12 2.8E-17 112.5 11.5 104 57-160 83-234 (236)
92 TIGR02187 GlrX_arch Glutaredox 99.4 1.5E-12 3.2E-17 112.5 11.8 95 60-158 119-214 (215)
93 PRK00293 dipZ thiol:disulfide 99.4 1.1E-12 2.4E-17 128.7 11.8 97 62-159 459-569 (571)
94 PTZ00056 glutathione peroxidas 99.4 1.5E-12 3.2E-17 110.5 10.4 104 58-161 24-179 (199)
95 PLN02919 haloacid dehalogenase 99.4 2.5E-12 5.4E-17 134.6 12.9 89 72-160 419-536 (1057)
96 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.7E-12 5.9E-17 100.9 10.2 94 59-154 6-120 (123)
97 cd02966 TlpA_like_family TlpA- 99.4 1.8E-12 3.9E-17 100.5 9.0 85 61-145 7-116 (116)
98 PF08534 Redoxin: Redoxin; In 99.4 2.9E-12 6.2E-17 104.0 9.6 88 61-148 16-136 (146)
99 TIGR02661 MauD methylamine deh 99.4 3.9E-12 8.4E-17 107.4 10.6 98 58-159 57-178 (189)
100 cd03012 TlpA_like_DipZ_like Tl 99.4 3.3E-12 7.1E-17 100.8 9.5 75 72-146 22-125 (126)
101 PLN02412 probable glutathione 99.3 9.4E-12 2E-16 102.9 10.8 103 59-161 15-165 (167)
102 cd02967 mauD Methylamine utili 99.3 4.6E-12 9.9E-17 98.2 8.2 69 72-140 20-109 (114)
103 cd02983 P5_C P5 family, C-term 99.3 1.9E-11 4.1E-16 95.9 11.1 110 266-380 2-119 (130)
104 TIGR02540 gpx7 putative glutat 99.3 1.7E-11 3.6E-16 100.2 10.4 99 61-159 10-152 (153)
105 PRK11509 hydrogenase-1 operon 99.3 6.9E-11 1.5E-15 91.2 12.7 106 59-164 20-128 (132)
106 cd00340 GSH_Peroxidase Glutath 99.3 1.1E-11 2.4E-16 101.1 8.4 83 72-155 21-151 (152)
107 PF13848 Thioredoxin_6: Thiore 99.3 6.1E-10 1.3E-14 94.2 19.2 167 90-262 7-184 (184)
108 cd02958 UAS UAS family; UAS is 99.3 1.2E-10 2.6E-15 90.0 11.9 94 67-160 11-111 (114)
109 cd03073 PDI_b'_ERp72_ERp57 PDI 99.3 2.4E-11 5.3E-16 92.3 7.8 101 268-376 1-111 (111)
110 cd02973 TRX_GRX_like Thioredox 99.2 4.2E-11 9.1E-16 82.9 6.9 60 76-138 2-61 (67)
111 cd02960 AGR Anterior Gradient 99.2 8.6E-11 1.9E-15 90.7 7.5 81 66-147 16-100 (130)
112 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 2.7E-10 5.9E-15 83.0 9.7 77 72-153 11-87 (89)
113 PTZ00256 glutathione peroxidas 99.2 1.6E-10 3.5E-15 97.1 9.7 103 58-160 25-181 (183)
114 cd02969 PRX_like1 Peroxiredoxi 99.2 5.3E-10 1.2E-14 93.2 12.1 93 72-164 24-156 (171)
115 COG4232 Thiol:disulfide interc 99.1 2.6E-10 5.5E-15 107.7 10.7 102 59-160 457-568 (569)
116 cd02981 PDI_b_family Protein D 99.1 1E-09 2.2E-14 82.2 10.5 95 165-263 2-97 (97)
117 smart00594 UAS UAS domain. 99.1 2.1E-09 4.5E-14 83.9 11.7 89 68-156 22-121 (122)
118 COG2143 Thioredoxin-related pr 99.1 5.1E-09 1.1E-13 80.9 13.4 110 68-177 37-166 (182)
119 KOG0914 Thioredoxin-like prote 99.1 5.9E-10 1.3E-14 90.9 8.3 90 56-145 124-223 (265)
120 cd03017 PRX_BCP Peroxiredoxin 99.1 1.1E-09 2.3E-14 88.2 10.0 85 72-156 22-139 (140)
121 cd02982 PDI_b'_family Protein 99.1 7.4E-10 1.6E-14 84.0 8.5 94 277-376 6-103 (103)
122 PF13899 Thioredoxin_7: Thiore 99.1 5.7E-10 1.2E-14 80.5 7.3 69 66-135 10-81 (82)
123 cd03066 PDI_b_Calsequestrin_mi 99.1 2.5E-09 5.4E-14 80.6 10.7 97 164-264 2-101 (102)
124 PRK00522 tpx lipid hydroperoxi 99.0 2.4E-09 5.3E-14 88.5 11.2 84 72-156 43-165 (167)
125 cd03069 PDI_b_ERp57 PDIb famil 99.0 3.1E-09 6.6E-14 80.3 10.1 95 164-263 2-103 (104)
126 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 9.7E-10 2.1E-14 86.4 7.3 70 72-141 24-123 (124)
127 KOG0913 Thiol-disulfide isomer 99.0 1.1E-10 2.4E-15 96.6 1.9 101 57-160 25-126 (248)
128 cd03015 PRX_Typ2cys Peroxiredo 99.0 5.4E-09 1.2E-13 87.2 11.0 88 72-159 28-156 (173)
129 cd03014 PRX_Atyp2cys Peroxired 99.0 5.1E-09 1.1E-13 84.6 9.9 74 72-146 25-129 (143)
130 TIGR03137 AhpC peroxiredoxin. 99.0 6.8E-09 1.5E-13 87.5 10.7 86 72-157 30-153 (187)
131 PRK09437 bcp thioredoxin-depen 98.9 9.5E-09 2.1E-13 84.1 11.2 95 58-152 15-145 (154)
132 KOG2501 Thioredoxin, nucleored 98.9 4.4E-09 9.6E-14 82.7 6.8 70 71-140 31-129 (157)
133 cd02970 PRX_like2 Peroxiredoxi 98.9 1.5E-08 3.2E-13 82.5 10.0 74 72-145 22-148 (149)
134 cd03018 PRX_AhpE_like Peroxire 98.9 2E-08 4.3E-13 81.7 10.6 74 74-147 29-134 (149)
135 PRK10382 alkyl hydroperoxide r 98.9 2.8E-08 6.1E-13 83.1 11.5 88 72-159 30-155 (187)
136 COG0526 TrxA Thiol-disulfide i 98.9 1.4E-08 3.1E-13 78.8 8.7 82 73-154 32-118 (127)
137 cd03068 PDI_b_ERp72 PDIb famil 98.8 4.1E-08 9E-13 74.3 10.0 97 163-263 1-107 (107)
138 PRK13190 putative peroxiredoxi 98.8 5.7E-08 1.2E-12 82.9 11.5 89 72-160 26-154 (202)
139 PRK10606 btuE putative glutath 98.8 3.4E-08 7.4E-13 82.1 9.2 56 58-114 10-66 (183)
140 TIGR02196 GlrX_YruB Glutaredox 98.8 5.3E-08 1.2E-12 68.6 8.5 69 77-157 2-74 (74)
141 cd02971 PRX_family Peroxiredox 98.8 5.1E-08 1.1E-12 78.4 9.0 77 72-148 21-131 (140)
142 cd02968 SCO SCO (an acronym fo 98.7 3.9E-08 8.5E-13 79.2 7.5 43 72-114 21-68 (142)
143 PRK15000 peroxidase; Provision 98.7 1.5E-07 3.2E-12 80.0 10.9 87 72-158 33-160 (200)
144 cd03007 PDI_a_ERp29_N PDIa fam 98.7 2.2E-07 4.8E-12 70.5 10.1 93 169-263 7-115 (116)
145 PF13728 TraF: F plasmid trans 98.7 2.7E-07 5.8E-12 79.1 11.1 83 72-156 119-214 (215)
146 cd01659 TRX_superfamily Thiore 98.7 1.2E-07 2.5E-12 64.7 7.4 60 77-137 1-63 (69)
147 PTZ00137 2-Cys peroxiredoxin; 98.6 4.1E-07 8.8E-12 79.7 11.6 86 72-157 97-222 (261)
148 cd03016 PRX_1cys Peroxiredoxin 98.6 3.7E-07 8E-12 78.0 11.2 85 75-159 28-153 (203)
149 KOG0912 Thiol-disulfide isomer 98.6 1.3E-06 2.9E-11 75.4 13.8 194 170-380 3-212 (375)
150 PRK13599 putative peroxiredoxi 98.6 5.6E-07 1.2E-11 77.2 11.3 87 72-158 27-154 (215)
151 TIGR02200 GlrX_actino Glutared 98.6 3.3E-07 7.2E-12 65.1 8.4 70 77-157 2-76 (77)
152 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 4.3E-07 9.4E-12 68.4 9.5 98 266-371 1-100 (101)
153 PF07912 ERp29_N: ERp29, N-ter 98.6 2.1E-06 4.5E-11 64.3 12.4 104 56-161 4-120 (126)
154 PRK13189 peroxiredoxin; Provis 98.6 6.4E-07 1.4E-11 77.4 11.2 88 72-159 34-162 (222)
155 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 3.1E-07 6.6E-12 69.6 7.8 99 266-372 1-104 (104)
156 KOG0911 Glutaredoxin-related p 98.6 6.8E-07 1.5E-11 74.2 10.3 164 71-235 15-199 (227)
157 PF03190 Thioredox_DsbH: Prote 98.5 4.5E-07 9.7E-12 72.8 8.7 81 60-140 24-116 (163)
158 PRK13191 putative peroxiredoxi 98.5 1.1E-06 2.3E-11 75.6 11.7 88 72-159 32-160 (215)
159 PF00085 Thioredoxin: Thioredo 98.5 7.4E-07 1.6E-11 67.3 8.5 99 268-374 1-102 (103)
160 PTZ00253 tryparedoxin peroxida 98.5 1.6E-06 3.5E-11 73.9 11.5 86 72-157 35-161 (199)
161 cd02996 PDI_a_ERp44 PDIa famil 98.5 1.4E-06 3.1E-11 66.4 10.0 93 164-260 3-108 (108)
162 TIGR03143 AhpF_homolog putativ 98.5 2.2E-05 4.7E-10 78.0 20.9 179 72-260 365-554 (555)
163 cd02991 UAS_ETEA UAS family, E 98.5 2.6E-06 5.7E-11 65.3 11.0 92 68-160 12-113 (116)
164 TIGR02739 TraF type-F conjugat 98.4 2.5E-06 5.4E-11 74.3 11.3 86 73-160 150-248 (256)
165 cd03002 PDI_a_MPD1_like PDI fa 98.4 9.7E-07 2.1E-11 67.5 8.0 100 268-373 2-109 (109)
166 KOG4277 Uncharacterized conser 98.4 5.9E-06 1.3E-10 71.3 13.1 177 178-374 41-229 (468)
167 PF02114 Phosducin: Phosducin; 98.4 1.7E-06 3.7E-11 76.2 10.2 103 56-160 125-238 (265)
168 PF13192 Thioredoxin_3: Thiore 98.4 3.4E-06 7.3E-11 59.6 9.7 72 79-157 4-76 (76)
169 cd03065 PDI_b_Calsequestrin_N 98.4 1.5E-06 3.1E-11 66.9 8.1 100 268-376 11-119 (120)
170 cd03001 PDI_a_P5 PDIa family, 98.4 1.7E-06 3.6E-11 65.4 8.3 97 268-372 2-102 (103)
171 cd03006 PDI_a_EFP1_N PDIa fami 98.4 2.3E-06 5E-11 65.3 8.7 99 266-372 9-113 (113)
172 cd03005 PDI_a_ERp46 PDIa famil 98.4 1.5E-06 3.3E-11 65.5 7.3 100 268-372 2-102 (102)
173 PRK13703 conjugal pilus assemb 98.4 5.7E-06 1.2E-10 71.7 11.4 86 73-160 143-241 (248)
174 PF01216 Calsequestrin: Calseq 98.4 1.9E-05 4.2E-10 69.9 14.6 198 164-380 36-251 (383)
175 cd03074 PDI_b'_Calsequestrin_C 98.3 3.5E-06 7.5E-11 60.9 7.9 109 266-376 1-120 (120)
176 TIGR02180 GRX_euk Glutaredoxin 98.3 1.6E-06 3.4E-11 62.8 6.0 58 77-138 1-63 (84)
177 TIGR01126 pdi_dom protein disu 98.3 4E-06 8.7E-11 63.1 8.4 99 271-375 1-101 (102)
178 PF14595 Thioredoxin_9: Thiore 98.3 3.1E-06 6.6E-11 66.2 7.8 75 72-148 40-118 (129)
179 KOG1672 ATP binding protein [P 98.3 2.7E-06 5.9E-11 68.7 7.2 89 57-146 67-156 (211)
180 cd02994 PDI_a_TMX PDIa family, 98.3 6.5E-06 1.4E-10 61.9 8.7 97 268-374 3-101 (101)
181 PF06110 DUF953: Eukaryotic pr 98.3 8.4E-06 1.8E-10 62.1 9.0 67 71-137 17-99 (119)
182 KOG2603 Oligosaccharyltransfer 98.2 1.1E-05 2.4E-10 70.3 10.7 112 53-164 37-170 (331)
183 PRK11200 grxA glutaredoxin 1; 98.2 8.4E-06 1.8E-10 59.1 8.6 77 76-161 2-84 (85)
184 KOG0910 Thioredoxin-like prote 98.2 5.9E-06 1.3E-10 64.7 7.5 104 266-377 43-149 (150)
185 cd02981 PDI_b_family Protein D 98.2 1.6E-05 3.5E-10 59.2 9.7 88 64-158 8-96 (97)
186 cd02995 PDI_a_PDI_a'_C PDIa fa 98.2 1.4E-05 2.9E-10 60.4 8.8 98 268-372 2-104 (104)
187 cd02961 PDI_a_family Protein D 98.2 1.9E-05 4.1E-10 59.0 9.5 89 169-260 4-101 (101)
188 PRK09381 trxA thioredoxin; Pro 98.2 1.5E-05 3.3E-10 60.8 9.0 101 268-376 5-108 (109)
189 KOG3425 Uncharacterized conser 98.2 9.5E-06 2.1E-10 60.1 7.1 73 64-136 13-104 (128)
190 PHA02278 thioredoxin-like prot 98.1 1.8E-05 3.8E-10 59.4 8.7 88 168-259 2-100 (103)
191 cd02993 PDI_a_APS_reductase PD 98.1 2.1E-05 4.5E-10 60.0 9.3 93 164-260 3-109 (109)
192 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 3E-05 6.5E-10 59.1 10.1 101 59-161 2-109 (111)
193 PRK10996 thioredoxin 2; Provis 98.1 1.3E-05 2.7E-10 64.1 8.3 100 268-375 37-138 (139)
194 cd02998 PDI_a_ERp38 PDIa famil 98.1 1.9E-05 4.1E-10 59.7 8.8 98 268-372 2-105 (105)
195 PRK10877 protein disulfide iso 98.1 1.9E-05 4.2E-10 68.7 9.8 81 72-159 106-230 (232)
196 cd02976 NrdH NrdH-redoxin (Nrd 98.1 2.9E-05 6.2E-10 54.2 8.3 67 77-155 2-72 (73)
197 PTZ00443 Thioredoxin domain-co 98.1 2E-05 4.4E-10 67.7 8.8 103 267-378 31-141 (224)
198 cd02956 ybbN ybbN protein fami 98.1 3.3E-05 7.2E-10 57.4 8.9 85 173-261 3-96 (96)
199 cd02953 DsbDgamma DsbD gamma f 98.1 3E-05 6.5E-10 58.6 8.5 88 171-261 2-104 (104)
200 cd02997 PDI_a_PDIR PDIa family 98.0 2.2E-05 4.8E-10 59.2 7.8 99 268-372 2-104 (104)
201 cd02965 HyaE HyaE family; HyaE 98.0 2.8E-05 6E-10 58.5 7.9 94 268-369 12-109 (111)
202 cd02989 Phd_like_TxnDC9 Phosdu 98.0 7.8E-05 1.7E-09 57.1 10.7 95 163-260 5-112 (113)
203 TIGR01068 thioredoxin thioredo 98.0 2.8E-05 6.1E-10 58.2 7.9 83 285-375 16-100 (101)
204 PF11009 DUF2847: Protein of u 98.0 0.00013 2.9E-09 53.9 10.6 91 62-152 6-104 (105)
205 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 3.2E-05 6.9E-10 65.9 8.4 77 72-156 76-197 (197)
206 cd02999 PDI_a_ERp44_like PDIa 98.0 3.1E-05 6.7E-10 58.0 7.3 77 179-260 17-100 (100)
207 cd03071 PDI_b'_NRX PDIb' famil 98.0 5.1E-05 1.1E-09 54.9 7.7 104 270-377 3-116 (116)
208 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 8.1E-05 1.7E-09 56.6 9.4 98 60-159 3-110 (111)
209 cd03000 PDI_a_TMX3 PDIa family 97.9 6.8E-05 1.5E-09 56.6 8.7 96 274-375 7-103 (104)
210 cd02983 P5_C P5 family, C-term 97.9 0.00035 7.6E-09 54.8 12.7 108 57-164 3-119 (130)
211 cd02948 TRX_NDPK TRX domain, T 97.9 0.00012 2.6E-09 55.1 9.6 92 166-262 3-101 (102)
212 cd02950 TxlA TRX-like protein 97.9 7.9E-05 1.7E-09 59.7 9.1 98 276-379 13-113 (142)
213 COG3118 Thioredoxin domain-con 97.9 4.6E-05 1E-09 66.6 8.2 105 265-378 22-132 (304)
214 KOG3414 Component of the U4/U6 97.9 0.0002 4.4E-09 53.6 9.9 78 63-140 11-90 (142)
215 PRK11657 dsbG disulfide isomer 97.8 0.00014 3.1E-09 64.1 10.1 82 73-157 117-249 (251)
216 PF07449 HyaE: Hydrogenase-1 e 97.8 0.00014 3.1E-09 54.1 8.2 94 57-151 10-106 (107)
217 PF00462 Glutaredoxin: Glutare 97.8 0.00017 3.6E-09 48.3 8.0 54 77-138 1-58 (60)
218 TIGR03143 AhpF_homolog putativ 97.8 0.00017 3.8E-09 71.6 11.4 92 60-156 462-554 (555)
219 TIGR00424 APS_reduc 5'-adenyly 97.8 0.00019 4.1E-09 68.3 10.8 96 163-262 352-461 (463)
220 cd03023 DsbA_Com1_like DsbA fa 97.8 0.00023 5E-09 57.9 10.0 33 72-104 4-36 (154)
221 COG1225 Bcp Peroxiredoxin [Pos 97.8 0.00049 1.1E-08 55.1 10.9 98 62-159 19-155 (157)
222 PTZ00051 thioredoxin; Provisio 97.7 0.00019 4.2E-09 53.4 8.2 89 164-257 2-96 (98)
223 cd02963 TRX_DnaJ TRX domain, D 97.7 0.00013 2.9E-09 55.7 7.2 84 283-374 24-110 (111)
224 PLN02309 5'-adenylylsulfate re 97.7 0.00025 5.3E-09 67.5 10.3 96 163-262 346-455 (457)
225 cd02985 TRX_CDSP32 TRX family, 97.7 0.00033 7.1E-09 52.8 9.1 88 169-261 2-100 (103)
226 PF13462 Thioredoxin_4: Thiore 97.7 0.00046 9.9E-09 56.7 10.6 82 72-158 11-162 (162)
227 PRK15317 alkyl hydroperoxide r 97.7 0.00037 8E-09 68.8 11.4 97 60-161 102-199 (517)
228 TIGR02183 GRXA Glutaredoxin, G 97.7 0.0004 8.6E-09 50.3 8.5 75 77-160 2-82 (86)
229 cd03070 PDI_b_ERp44 PDIb famil 97.7 0.00026 5.7E-09 51.0 7.3 83 164-252 1-85 (91)
230 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00059 1.3E-08 49.1 8.7 95 62-157 8-109 (112)
231 TIGR02190 GlrX-dom Glutaredoxi 97.6 0.00038 8.3E-09 49.5 8.0 57 74-138 7-66 (79)
232 cd02954 DIM1 Dim1 family; Dim1 97.6 0.0005 1.1E-08 52.2 8.7 69 170-241 2-79 (114)
233 PRK11509 hydrogenase-1 operon 97.6 0.00051 1.1E-08 53.4 8.7 105 263-378 17-126 (132)
234 cd02957 Phd_like Phosducin (Ph 97.6 0.00049 1.1E-08 52.8 8.7 93 163-260 5-112 (113)
235 cd03419 GRX_GRXh_1_2_like Glut 97.6 0.00022 4.8E-09 51.1 6.0 57 77-139 2-63 (82)
236 PF07912 ERp29_N: ERp29, N-ter 97.5 0.0017 3.6E-08 49.0 10.4 108 268-375 6-118 (126)
237 PLN00410 U5 snRNP protein, DIM 97.5 0.0012 2.6E-08 52.2 9.9 83 164-249 5-97 (142)
238 PF02966 DIM1: Mitosis protein 97.5 0.0031 6.6E-08 48.2 11.6 78 62-140 7-87 (133)
239 cd02984 TRX_PICOT TRX domain, 97.5 0.0009 1.9E-08 49.6 8.9 87 169-260 1-96 (97)
240 cd02987 Phd_like_Phd Phosducin 97.5 0.00093 2E-08 55.5 9.5 99 162-263 62-174 (175)
241 cd02947 TRX_family TRX family; 97.5 0.00085 1.8E-08 48.8 8.2 86 172-261 2-93 (93)
242 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00086 1.9E-08 46.7 7.5 66 78-154 2-70 (72)
243 PTZ00062 glutaredoxin; Provisi 97.4 0.0023 5E-08 54.2 11.2 162 167-351 3-176 (204)
244 cd03019 DsbA_DsbA DsbA family, 97.4 0.0011 2.3E-08 55.5 9.2 38 72-109 14-51 (178)
245 cd02949 TRX_NTR TRX domain, no 97.4 0.00094 2E-08 49.6 7.8 85 281-373 11-97 (97)
246 cd02988 Phd_like_VIAF Phosduci 97.4 0.0019 4.1E-08 54.4 10.0 98 162-262 82-190 (192)
247 cd02975 PfPDO_like_N Pyrococcu 97.3 0.0014 3.1E-08 50.1 8.3 87 282-377 21-111 (113)
248 PF05768 DUF836: Glutaredoxin- 97.3 0.00073 1.6E-08 48.2 6.2 78 77-157 2-81 (81)
249 TIGR03140 AhpF alkyl hydropero 97.3 0.0025 5.4E-08 62.9 11.5 96 60-160 103-199 (515)
250 cd02066 GRX_family Glutaredoxi 97.3 0.00086 1.9E-08 46.4 6.1 55 77-139 2-60 (72)
251 cd03066 PDI_b_Calsequestrin_mi 97.3 0.0062 1.3E-07 45.6 10.9 91 62-159 7-100 (102)
252 PRK10329 glutaredoxin-like pro 97.2 0.0056 1.2E-07 43.6 9.8 71 77-159 3-76 (81)
253 cd03067 PDI_b_PDIR_N PDIb fami 97.2 0.0012 2.7E-08 47.5 6.0 96 275-374 11-110 (112)
254 cd03418 GRX_GRXb_1_3_like Glut 97.2 0.002 4.3E-08 45.2 6.8 54 77-138 2-60 (75)
255 cd02992 PDI_a_QSOX PDIa family 97.1 0.0017 3.7E-08 49.8 6.8 83 268-353 3-88 (114)
256 cd03029 GRX_hybridPRX5 Glutare 97.1 0.0054 1.2E-07 42.6 8.8 66 77-156 3-71 (72)
257 TIGR00411 redox_disulf_1 small 97.1 0.0046 9.9E-08 44.1 8.6 77 287-375 4-81 (82)
258 TIGR02181 GRX_bact Glutaredoxi 97.1 0.0015 3.3E-08 46.4 5.8 54 77-138 1-58 (79)
259 PHA03050 glutaredoxin; Provisi 97.1 0.0019 4.2E-08 48.8 6.6 66 67-139 7-79 (108)
260 PRK10954 periplasmic protein d 97.1 0.0036 7.8E-08 53.7 9.0 40 73-112 37-79 (207)
261 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.0093 2E-07 44.9 10.1 90 62-159 7-103 (104)
262 cd03027 GRX_DEP Glutaredoxin ( 97.0 0.0031 6.8E-08 43.9 6.8 54 77-138 3-60 (73)
263 PF00837 T4_deiodinase: Iodoth 97.0 0.0087 1.9E-07 51.2 10.5 67 44-113 73-142 (237)
264 TIGR02189 GlrX-like_plant Glut 97.0 0.0018 4E-08 48.1 5.8 54 77-138 10-70 (99)
265 PRK15317 alkyl hydroperoxide r 97.0 0.12 2.5E-06 51.3 20.0 169 74-263 19-197 (517)
266 cd03013 PRX5_like Peroxiredoxi 97.0 0.0072 1.6E-07 49.2 9.5 45 71-115 28-75 (155)
267 cd02962 TMX2 TMX2 family; comp 96.9 0.003 6.4E-08 51.0 6.6 80 267-352 29-117 (152)
268 cd02972 DsbA_family DsbA famil 96.9 0.0031 6.7E-08 46.5 6.3 59 77-135 1-91 (98)
269 cd02951 SoxW SoxW family; SoxW 96.9 0.0065 1.4E-07 47.4 8.3 90 170-262 3-117 (125)
270 TIGR01295 PedC_BrcD bacterioci 96.9 0.0098 2.1E-07 46.2 9.0 91 169-261 12-121 (122)
271 KOG0907 Thioredoxin [Posttrans 96.8 0.014 3E-07 43.9 8.7 79 179-262 20-104 (106)
272 COG1999 Uncharacterized protei 96.6 0.047 1E-06 46.7 12.1 104 57-160 51-204 (207)
273 COG0695 GrxC Glutaredoxin and 96.6 0.0079 1.7E-07 42.7 6.0 51 77-133 3-59 (80)
274 TIGR00365 monothiol glutaredox 96.6 0.017 3.7E-07 42.7 7.9 64 66-138 5-76 (97)
275 PF13743 Thioredoxin_5: Thiore 96.6 0.0084 1.8E-07 49.9 6.9 31 79-109 2-32 (176)
276 COG0386 BtuE Glutathione perox 96.5 0.055 1.2E-06 42.7 10.3 103 57-160 9-160 (162)
277 TIGR03140 AhpF alkyl hydropero 96.5 0.49 1.1E-05 46.8 19.8 169 73-262 19-197 (515)
278 cd02986 DLP Dim1 family, Dim1- 96.4 0.024 5.1E-07 42.9 7.7 68 171-241 3-79 (114)
279 cd02952 TRP14_like Human TRX-r 96.4 0.014 3.1E-07 44.8 6.6 85 283-372 21-118 (119)
280 KOG2640 Thioredoxin [Function 96.2 0.0073 1.6E-07 53.2 4.9 92 68-161 69-163 (319)
281 PF02630 SCO1-SenC: SCO1/SenC; 96.2 0.032 7E-07 46.3 8.5 59 57-115 36-98 (174)
282 KOG3170 Conserved phosducin-li 96.1 0.051 1.1E-06 44.7 8.7 108 55-167 90-207 (240)
283 PRK10638 glutaredoxin 3; Provi 96.1 0.025 5.3E-07 40.5 6.3 54 77-138 4-61 (83)
284 KOG0908 Thioredoxin-like prote 96.0 0.044 9.4E-07 46.8 8.2 97 163-264 2-106 (288)
285 cd03028 GRX_PICOT_like Glutare 96.0 0.028 6.1E-07 41.0 6.2 61 69-138 4-72 (90)
286 PRK00293 dipZ thiol:disulfide 95.8 0.063 1.4E-06 53.5 10.0 97 164-263 454-569 (571)
287 COG1331 Highly conserved prote 95.7 0.029 6.3E-07 55.2 6.8 79 61-139 31-121 (667)
288 PRK10824 glutaredoxin-4; Provi 95.7 0.035 7.6E-07 42.3 5.9 63 66-137 8-78 (115)
289 KOG1752 Glutaredoxin and relat 95.2 0.093 2E-06 39.1 6.7 65 66-138 7-76 (104)
290 KOG3171 Conserved phosducin-li 95.2 0.069 1.5E-06 44.4 6.4 103 56-160 138-251 (273)
291 cd03068 PDI_b_ERp72 PDIb famil 95.1 0.67 1.4E-05 34.9 11.2 90 62-158 7-106 (107)
292 TIGR00412 redox_disulf_2 small 94.9 0.16 3.5E-06 35.5 7.0 68 185-260 3-75 (76)
293 KOG1731 FAD-dependent sulfhydr 94.9 0.047 1E-06 52.4 5.4 139 267-408 40-199 (606)
294 TIGR02738 TrbB type-F conjugat 94.4 0.62 1.3E-05 37.7 10.0 89 285-376 53-153 (153)
295 PRK12759 bifunctional gluaredo 94.3 0.11 2.4E-06 49.6 6.5 54 77-138 4-69 (410)
296 PRK03147 thiol-disulfide oxido 93.9 0.83 1.8E-05 37.7 10.4 90 283-376 61-172 (173)
297 TIGR02740 TraF-like TraF-like 93.9 0.33 7.2E-06 43.4 8.3 88 285-377 169-265 (271)
298 KOG2792 Putative cytochrome C 93.5 0.47 1E-05 41.0 8.0 105 57-161 123-276 (280)
299 PF13098 Thioredoxin_2: Thiore 93.5 0.1 2.2E-06 39.6 3.9 85 283-372 5-112 (112)
300 PF02114 Phosducin: Phosducin; 93.5 0.4 8.7E-06 42.6 8.0 99 163-264 126-238 (265)
301 cd03011 TlpA_like_ScsD_MtbDsbE 93.3 0.3 6.6E-06 37.7 6.4 74 180-257 20-119 (123)
302 cd02958 UAS UAS family; UAS is 93.1 0.79 1.7E-05 34.9 8.2 90 283-378 17-113 (114)
303 PF01323 DSBA: DSBA-like thior 92.6 1.5 3.3E-05 36.8 10.2 36 76-111 1-37 (193)
304 cd02973 TRX_GRX_like Thioredox 92.5 0.8 1.7E-05 30.9 6.8 55 287-350 4-59 (67)
305 COG4232 Thiol:disulfide interc 92.2 0.54 1.2E-05 45.8 7.4 96 165-263 457-567 (569)
306 cd02955 SSP411 TRX domain, SSP 92.0 1.1 2.5E-05 34.7 7.8 70 169-241 4-91 (124)
307 COG1651 DsbG Protein-disulfide 91.8 1.1 2.4E-05 39.5 8.7 36 119-159 207-242 (244)
308 PRK13728 conjugal transfer pro 91.6 1.5 3.2E-05 36.4 8.5 90 286-378 73-173 (181)
309 PRK14018 trifunctional thiored 91.4 2 4.3E-05 42.1 10.3 109 265-377 38-174 (521)
310 cd02959 ERp19 Endoplasmic reti 91.3 0.93 2E-05 34.8 6.6 69 282-355 18-88 (117)
311 KOG2603 Oligosaccharyltransfer 91.2 3.8 8.2E-05 36.7 10.9 122 254-380 28-170 (331)
312 smart00594 UAS UAS domain. 90.7 1.4 3E-05 34.1 7.2 62 305-372 54-121 (122)
313 TIGR02739 TraF type-F conjugat 90.7 1.9 4.1E-05 38.0 8.7 87 286-377 154-249 (256)
314 COG4545 Glutaredoxin-related p 90.7 0.84 1.8E-05 31.1 4.9 57 78-141 5-77 (85)
315 PF13728 TraF: F plasmid trans 90.3 1.5 3.2E-05 37.7 7.7 80 286-370 124-212 (215)
316 PF11009 DUF2847: Protein of u 90.3 0.62 1.3E-05 34.7 4.5 75 165-241 2-89 (105)
317 TIGR00385 dsbE periplasmic pro 90.2 0.83 1.8E-05 37.8 5.9 44 217-263 127-170 (173)
318 cd03010 TlpA_like_DsbE TlpA-li 90.1 0.66 1.4E-05 36.0 5.1 73 180-255 25-125 (127)
319 TIGR02654 circ_KaiB circadian 90.0 1.6 3.5E-05 31.2 6.2 75 74-149 3-78 (87)
320 PRK09301 circadian clock prote 89.3 1.7 3.8E-05 32.0 6.1 76 73-149 5-81 (103)
321 cd02978 KaiB_like KaiB-like fa 89.1 2.3 5.1E-05 29.2 6.3 61 76-136 3-64 (72)
322 cd03026 AhpF_NTD_C TRX-GRX-lik 88.8 2 4.3E-05 31.1 6.3 56 285-349 15-71 (89)
323 COG3019 Predicted metal-bindin 88.7 9.9 0.00021 29.7 10.3 76 76-160 27-104 (149)
324 cd03031 GRX_GRX_like Glutaredo 88.6 1.9 4.1E-05 34.6 6.5 53 77-137 2-68 (147)
325 PF06053 DUF929: Domain of unk 88.6 1.7 3.7E-05 37.9 6.7 59 69-135 54-113 (249)
326 COG0450 AhpC Peroxiredoxin [Po 88.2 7.8 0.00017 32.3 9.9 87 73-159 33-160 (194)
327 PRK13703 conjugal pilus assemb 87.7 4.4 9.4E-05 35.6 8.7 88 286-378 147-243 (248)
328 PRK15412 thiol:disulfide inter 87.4 2.4 5.2E-05 35.5 6.9 41 219-262 134-174 (185)
329 cd03074 PDI_b'_Calsequestrin_C 87.0 11 0.00023 28.1 10.7 87 73-159 20-119 (120)
330 cd02966 TlpA_like_family TlpA- 86.7 4.5 9.8E-05 30.0 7.7 67 283-354 19-108 (116)
331 PF13778 DUF4174: Domain of un 86.6 4.5 9.7E-05 31.0 7.4 86 285-375 11-111 (118)
332 cd03009 TryX_like_TryX_NRX Try 85.4 4.8 0.00011 31.3 7.4 72 283-356 18-112 (131)
333 TIGR00762 DegV EDD domain prot 85.4 3.4 7.3E-05 37.2 7.2 157 113-284 9-169 (275)
334 PF13417 GST_N_3: Glutathione 85.3 9.9 0.00021 26.1 9.6 72 79-163 1-74 (75)
335 cd02974 AhpF_NTD_N Alkyl hydro 84.9 13 0.00028 27.2 9.0 74 72-158 18-92 (94)
336 PHA03075 glutaredoxin-like pro 84.3 1.8 3.9E-05 32.4 3.9 36 74-113 2-37 (123)
337 KOG1651 Glutathione peroxidase 84.2 8.3 0.00018 31.2 7.9 59 56-114 17-76 (171)
338 cd03040 GST_N_mPGES2 GST_N fam 84.1 11 0.00025 25.9 8.2 72 77-161 2-77 (77)
339 KOG0914 Thioredoxin-like prote 83.9 2.8 6.1E-05 35.4 5.4 76 166-241 128-216 (265)
340 KOG1672 ATP binding protein [P 82.6 6.5 0.00014 32.6 6.9 78 161-241 65-148 (211)
341 cd02977 ArsC_family Arsenate R 82.1 1.7 3.7E-05 32.5 3.4 76 78-159 2-86 (105)
342 TIGR02661 MauD methylamine deh 82.1 10 0.00022 31.8 8.4 92 282-380 73-183 (189)
343 cd03060 GST_N_Omega_like GST_N 82.0 9.5 0.00021 25.8 6.9 55 78-137 2-57 (71)
344 PF07449 HyaE: Hydrogenase-1 e 81.6 9.7 0.00021 28.5 7.0 72 164-240 11-92 (107)
345 TIGR01617 arsC_related transcr 79.5 3.9 8.5E-05 31.3 4.6 34 78-117 2-35 (117)
346 cd02964 TryX_like_family Trypa 79.1 11 0.00024 29.3 7.3 72 283-356 17-112 (132)
347 cd02990 UAS_FAF1 UAS family, F 78.9 30 0.00065 27.3 12.2 90 70-160 18-133 (136)
348 KOG2507 Ubiquitin regulatory p 78.7 25 0.00055 33.0 10.0 90 71-160 16-111 (506)
349 COG3531 Predicted protein-disu 78.5 4.2 9.1E-05 33.8 4.6 44 117-160 164-209 (212)
350 PLN02919 haloacid dehalogenase 78.0 9.7 0.00021 41.3 8.5 81 179-262 419-534 (1057)
351 cd02969 PRX_like1 Peroxiredoxi 77.5 27 0.00059 28.5 9.5 91 285-380 27-156 (171)
352 TIGR02742 TrbC_Ftype type-F co 77.4 9.3 0.0002 29.8 6.0 46 114-159 58-114 (130)
353 PF05768 DUF836: Glutaredoxin- 77.2 4.8 0.0001 28.4 4.1 67 296-373 13-81 (81)
354 KOG3170 Conserved phosducin-li 76.9 37 0.00081 28.5 9.5 98 162-262 91-199 (240)
355 cd03041 GST_N_2GST_N GST_N fam 76.7 22 0.00047 24.5 8.5 71 77-159 2-76 (77)
356 PF00255 GSHPx: Glutathione pe 76.3 4.4 9.5E-05 30.5 3.9 55 60-115 8-63 (108)
357 KOG0852 Alkyl hydroperoxide re 76.3 23 0.0005 29.0 8.0 86 71-157 31-158 (196)
358 cd03036 ArsC_like Arsenate Red 75.9 4.3 9.4E-05 30.7 3.9 54 78-137 2-60 (111)
359 PHA02125 thioredoxin-like prot 75.1 7.3 0.00016 26.9 4.6 47 184-235 2-51 (75)
360 PF13778 DUF4174: Domain of un 74.9 35 0.00077 26.1 8.8 87 71-159 8-111 (118)
361 PLN02399 phospholipid hydroper 73.3 30 0.00064 30.3 8.8 92 283-377 99-235 (236)
362 PF13192 Thioredoxin_3: Thiore 73.2 23 0.0005 24.4 6.8 69 290-373 6-76 (76)
363 cd00570 GST_N_family Glutathio 73.2 11 0.00025 24.6 5.2 51 79-133 3-55 (71)
364 cd03051 GST_N_GTT2_like GST_N 73.0 16 0.00035 24.6 6.0 55 78-137 2-60 (74)
365 PRK01655 spxA transcriptional 72.7 6.9 0.00015 30.7 4.4 35 77-117 2-36 (131)
366 cd03035 ArsC_Yffb Arsenate Red 72.4 3.7 8E-05 30.8 2.7 33 78-116 2-34 (105)
367 PF04592 SelP_N: Selenoprotein 69.1 8.1 0.00018 33.2 4.2 44 71-114 24-71 (238)
368 cd02960 AGR Anterior Gradient 68.6 20 0.00043 28.0 6.0 26 173-198 16-41 (130)
369 cd03037 GST_N_GRX2 GST_N famil 68.4 17 0.00037 24.5 5.2 68 79-157 3-70 (71)
370 KOG3171 Conserved phosducin-li 68.4 20 0.00043 30.3 6.2 100 163-265 139-252 (273)
371 PF09673 TrbC_Ftype: Type-F co 68.1 20 0.00043 27.2 5.9 45 90-136 36-80 (113)
372 COG2761 FrnE Predicted dithiol 67.1 14 0.0003 31.8 5.2 43 118-164 175-217 (225)
373 PF07689 KaiB: KaiB domain; I 66.8 2.7 5.9E-05 29.8 0.8 53 80-132 3-56 (82)
374 cd02967 mauD Methylamine utili 66.3 31 0.00066 25.7 6.8 54 283-340 21-77 (114)
375 COG0821 gcpE 1-hydroxy-2-methy 65.7 10 0.00022 34.4 4.3 76 85-160 264-351 (361)
376 TIGR02196 GlrX_YruB Glutaredox 64.3 39 0.00085 22.4 6.8 66 184-261 2-74 (74)
377 PF13905 Thioredoxin_8: Thiore 63.7 18 0.0004 26.0 4.9 38 287-327 6-46 (95)
378 PRK10299 PhoPQ regulatory prot 63.6 8.1 0.00018 23.6 2.3 18 1-18 1-18 (47)
379 cd02991 UAS_ETEA UAS family, E 63.4 64 0.0014 24.6 9.1 68 305-378 44-115 (116)
380 PF08806 Sep15_SelM: Sep15/Sel 63.4 14 0.00029 26.0 3.8 34 127-160 41-76 (78)
381 PTZ00056 glutathione peroxidas 62.0 55 0.0012 27.7 8.1 96 283-380 39-182 (199)
382 cd03032 ArsC_Spx Arsenate Redu 61.0 21 0.00045 27.1 4.9 34 77-116 2-35 (115)
383 cd03045 GST_N_Delta_Epsilon GS 59.9 43 0.00094 22.5 6.0 51 78-132 2-56 (74)
384 cd03059 GST_N_SspA GST_N famil 59.0 14 0.00029 25.0 3.3 69 78-158 2-71 (73)
385 COG1307 DegV Uncharacterized p 58.9 74 0.0016 28.7 8.7 157 113-284 11-172 (282)
386 PF09822 ABC_transp_aux: ABC-t 58.0 1.4E+02 0.003 26.6 13.1 74 55-128 6-89 (271)
387 cd03025 DsbA_FrnE_like DsbA fa 57.5 15 0.00032 30.7 3.9 28 77-104 3-30 (193)
388 PRK12559 transcriptional regul 56.9 13 0.00028 29.1 3.2 34 77-116 2-35 (131)
389 cd03024 DsbA_FrnE DsbA family, 56.7 15 0.00032 30.9 3.8 37 116-156 164-200 (201)
390 cd03055 GST_N_Omega GST_N fami 55.6 65 0.0014 22.9 6.5 54 76-133 18-72 (89)
391 PLN02412 probable glutathione 55.0 79 0.0017 25.8 7.7 40 283-324 29-70 (167)
392 PF04551 GcpE: GcpE protein; 54.6 11 0.00024 34.6 2.8 75 85-159 271-358 (359)
393 KOG3414 Component of the U4/U6 53.9 78 0.0017 24.4 6.6 59 285-351 25-86 (142)
394 COG2143 Thioredoxin-related pr 52.5 1.2E+02 0.0027 24.4 7.8 40 215-257 103-142 (182)
395 PF02966 DIM1: Mitosis protein 52.0 1.1E+02 0.0025 23.8 9.9 50 285-340 22-73 (133)
396 cd03022 DsbA_HCCA_Iso DsbA fam 51.3 24 0.00052 29.3 4.2 35 117-156 157-191 (192)
397 PF04134 DUF393: Protein of un 50.9 24 0.00051 26.6 3.7 63 80-146 2-67 (114)
398 KOG1422 Intracellular Cl- chan 50.7 90 0.0019 26.5 7.1 69 84-164 20-89 (221)
399 TIGR03521 GldG gliding-associa 50.5 2E+02 0.0042 28.9 11.0 78 52-129 26-116 (552)
400 PF02645 DegV: Uncharacterised 49.2 66 0.0014 28.9 6.9 155 114-284 11-171 (280)
401 PRK13344 spxA transcriptional 47.3 22 0.00048 27.8 3.1 34 77-116 2-35 (132)
402 PF06953 ArsD: Arsenical resis 46.5 1.1E+02 0.0024 23.6 6.7 53 105-160 40-102 (123)
403 PF14595 Thioredoxin_9: Thiore 44.6 72 0.0016 24.8 5.6 72 169-240 29-107 (129)
404 cd03012 TlpA_like_DipZ_like Tl 43.3 1.3E+02 0.0028 22.9 7.0 18 180-197 23-40 (126)
405 PF12273 RCR: Chitin synthesis 40.8 18 0.00038 28.3 1.6 8 5-12 2-9 (130)
406 KOG0913 Thiol-disulfide isomer 40.2 15 0.00033 31.6 1.2 95 169-270 30-132 (248)
407 PRK11200 grxA glutaredoxin 1; 38.8 76 0.0016 22.3 4.6 76 288-375 4-82 (85)
408 PRK13730 conjugal transfer pil 38.1 72 0.0016 27.0 4.8 42 116-158 151-192 (212)
409 cd03033 ArsC_15kD Arsenate Red 36.8 44 0.00095 25.4 3.2 33 77-115 2-34 (113)
410 PF11337 DUF3139: Protein of u 36.8 36 0.00078 24.2 2.6 6 1-6 1-6 (85)
411 KOG2244 Highly conserved prote 36.5 35 0.00075 33.3 3.1 75 61-135 100-185 (786)
412 PRK00366 ispG 4-hydroxy-3-meth 36.5 48 0.001 30.7 3.8 76 83-158 272-355 (360)
413 PTZ00256 glutathione peroxidas 35.7 2.5E+02 0.0055 23.2 8.3 33 290-324 49-82 (183)
414 TIGR00612 ispG_gcpE 1-hydroxy- 35.5 27 0.00059 31.9 2.1 71 74-146 256-335 (346)
415 cd03025 DsbA_FrnE_like DsbA fa 35.3 43 0.00093 27.8 3.3 22 117-138 159-180 (193)
416 PF09695 YtfJ_HI0045: Bacteria 34.9 1.3E+02 0.0027 24.5 5.5 42 116-157 112-155 (160)
417 cd03008 TryX_like_RdCVF Trypar 34.3 2.4E+02 0.0052 22.5 8.9 45 283-327 25-76 (146)
418 COG3592 Uncharacterized conser 33.3 46 0.00099 22.4 2.3 31 352-382 41-72 (74)
419 PHA02291 hypothetical protein 32.7 45 0.00099 24.5 2.5 23 1-23 1-23 (132)
420 KOG0855 Alkyl hydroperoxide re 31.5 36 0.00079 27.6 2.0 44 71-114 88-133 (211)
421 PF00578 AhpC-TSA: AhpC/TSA fa 29.6 1.9E+02 0.0041 21.6 5.9 44 282-327 24-70 (124)
422 cd02970 PRX_like2 Peroxiredoxi 29.1 1.4E+02 0.003 23.3 5.2 68 284-358 24-94 (149)
423 cd03052 GST_N_GDAP1 GST_N fami 28.8 1.9E+02 0.0041 19.6 7.2 55 78-138 2-60 (73)
424 COG3117 Uncharacterized protei 28.1 1.3E+02 0.0028 25.2 4.6 22 1-22 2-23 (188)
425 PRK13617 psbV cytochrome c-550 27.9 33 0.00072 28.1 1.3 32 51-90 44-75 (170)
426 TIGR02652 conserved hypothetic 27.2 23 0.00051 27.5 0.3 70 84-178 11-84 (163)
427 PF09654 DUF2396: Protein of u 27.1 23 0.00049 27.5 0.2 70 84-178 8-81 (161)
428 PF07315 DUF1462: Protein of u 26.3 2.5E+02 0.0054 20.3 5.1 62 305-372 28-92 (93)
429 TIGR01165 cbiN cobalt transpor 26.3 1.2E+02 0.0027 21.8 3.7 27 73-102 51-77 (91)
430 PF09695 YtfJ_HI0045: Bacteria 26.2 2E+02 0.0043 23.3 5.3 54 318-377 105-159 (160)
431 COG4837 Uncharacterized protei 25.9 1.6E+02 0.0036 21.3 4.2 63 306-374 36-101 (106)
432 COG1393 ArsC Arsenate reductas 25.6 91 0.002 23.8 3.3 21 77-97 3-23 (117)
433 TIGR02540 gpx7 putative glutat 25.6 3.4E+02 0.0074 21.5 8.4 40 283-324 22-63 (153)
434 KOG1364 Predicted ubiquitin re 23.7 94 0.002 28.6 3.4 56 106-161 133-190 (356)
435 cd03017 PRX_BCP Peroxiredoxin 21.9 3.7E+02 0.008 20.6 6.5 50 208-257 81-136 (140)
436 cd03030 GRX_SH3BGR Glutaredoxi 21.8 3.2E+02 0.0069 19.8 5.7 28 105-132 30-65 (92)
437 PF08534 Redoxin: Redoxin; In 21.2 4E+02 0.0086 20.6 7.8 46 205-250 83-134 (146)
438 cd03034 ArsC_ArsC Arsenate Red 21.0 98 0.0021 23.3 2.7 32 78-115 2-33 (112)
439 cd03061 GST_N_CLIC GST_N famil 20.7 3.4E+02 0.0073 19.6 8.2 69 82-162 19-88 (91)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-52 Score=382.76 Aligned_cols=345 Identities=31% Similarity=0.461 Sum_probs=305.8
Q ss_pred cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368 54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPT 130 (408)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (408)
....+..|+.++|+..+..+..++|.||||||+||++++|+++++++.++. .+.+++|||+++.++|.+|+|+||||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 346899999999999999999999999999999999999999999999977 79999999999999999999999999
Q ss_pred EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCcee
Q 015368 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVN 210 (408)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~ 210 (408)
+.+|+||+....|.|+++++.|..|+.+..+|.+..+.+.++.+.++...+..+|+||.+..+.....+..++.+..++.
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~ 182 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK 182 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence 99999996679999999999999999999999999999999999999999999999999877777444555669999999
Q ss_pred EEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCcc-EEEE
Q 015368 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWL 289 (408)
Q Consensus 211 f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~-~~i~ 289 (408)
|+++++.+++.+++.... +.+.+++++..+.....|.|.++.+.|.+||..++.|++..+|.++...++.+..+ .+++
T Consensus 183 F~~ts~~~~~~~~~~~~~-~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~ 261 (493)
T KOG0190|consen 183 FAHTSDSDVAKKLELNTE-GTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF 261 (493)
T ss_pred eeccCcHhHHhhccCCCC-CcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence 999999999999998732 14558889988888889999999999999999999999999999999998888663 3445
Q ss_pred EeeCC--CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc-EEEEEccCCccccCCC-CCCh
Q 015368 290 FAPAY--GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR-VIAYSARDAKKYVLNG-ELTL 365 (408)
Q Consensus 290 f~~~~--~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p-~i~i~~~~~~~y~~~~-~~~~ 365 (408)
|.+.. ..+.+++.++++|++|+++ ++|+++|..+. . +.+..||+....+| .+++.+..+.+|.+++ ..+.
T Consensus 262 ~~~~~~~~~e~~~~~~~~vAk~f~~~---l~Fi~~d~e~~--~-~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~ 335 (493)
T KOG0190|consen 262 FVFFKCNRFEELRKKFEEVAKKFKGK---LRFILIDPESF--A-RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQ 335 (493)
T ss_pred EeccccccHHHHHHHHHHHHHhcccc---eEEEEEChHHh--h-HHHHhcCcccccCCeeEEeeccccccccCccccccH
Confidence 55433 5889999999999999999 99999975543 4 47799999877777 4555555889999977 4888
Q ss_pred HHHHHHHHHHhcCcc--ccccccCchh-----hhcCccCCccceeee
Q 015368 366 SSIKSFGEEFLEDKL--LNQSDQISET-----ILKLPSQSRASYQLR 405 (408)
Q Consensus 366 ~~i~~Fi~~~~~gk~--~~kse~iP~~-----~~~~~~~~~~~~~~~ 405 (408)
++|..|+.++++|++ ++||||||++ ++.+|++||+++++.
T Consensus 336 ~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~d 382 (493)
T KOG0190|consen 336 ENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLD 382 (493)
T ss_pred HHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhc
Confidence 899999999999999 9999999998 556799999999875
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=4.2e-44 Score=348.64 Aligned_cols=329 Identities=23% Similarity=0.373 Sum_probs=281.0
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (408)
..+..++.++|+..+.++++++|+|||+||++|+++.|.|.++++.+++ ++.++.|||+++.++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 5788999999999998899999999999999999999999999988754 6999999999999999999999999999
Q ss_pred EEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeE
Q 015368 133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNF 211 (408)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f 211 (408)
+|++|+.. +|.|.++.+.|.+|+.+.+++++..+.+.+++..+.+.....+++++...++.....|.++| .++....|
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F 190 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF 190 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceE
Confidence 99988655 99999999999999999999999999999998887777778888888877778888898888 67777888
Q ss_pred EEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEe
Q 015368 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA 291 (408)
Q Consensus 212 ~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~ 291 (408)
+...+. ..+.+.+++..+.....|.| .+.++|.+||..+++|++.+++.+++..++..+.+.++++.
T Consensus 191 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (477)
T PTZ00102 191 FVKKHE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG 257 (477)
T ss_pred EEEcCC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec
Confidence 765432 24778888876655545555 48899999999999999999999999999988877666655
Q ss_pred eCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCC----CChHH
Q 015368 292 PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE----LTLSS 367 (408)
Q Consensus 292 ~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~----~~~~~ 367 (408)
..++.+++.+.++++|++++++ +.|+++|+... ..++++.+|+.. .|.+++.+..+ +|.+.+. ++.+.
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~---~~f~~vd~~~~--~~~~~~~~gi~~--~P~~~i~~~~~-~y~~~~~~~~~~~~~~ 329 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREK---YAFVWLDTEQF--GSHAKEHLLIEE--FPGLAYQSPAG-RYLLPPAKESFDSVEA 329 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCc---eEEEEEechhc--chhHHHhcCccc--CceEEEEcCCc-ccCCCccccccCCHHH
Confidence 4445667889999999999999 99999998764 334778999964 68888887544 6666543 78999
Q ss_pred HHHHHHHHhcCcc--ccccccCchh----hhcCccCCccceeeec
Q 015368 368 IKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT 406 (408)
Q Consensus 368 i~~Fi~~~~~gk~--~~kse~iP~~----~~~~~~~~~~~~~~~~ 406 (408)
|.+|++++++|++ +++|||+|++ +.+++++||++.++++
T Consensus 330 l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~ 374 (477)
T PTZ00102 330 LIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKS 374 (477)
T ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcC
Confidence 9999999999999 8999999976 8889999999887654
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.7e-43 Score=343.69 Aligned_cols=339 Identities=25% Similarity=0.390 Sum_probs=292.2
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (408)
.+..++.++|+..+.++++++|+|||+||++|+++.|.+.++++.+++ ++.|+.|||++++++|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 577899999999999999999999999999999999999999998865 49999999999999999999999999999
Q ss_pred EeCCeE-eEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCcee-
Q 015368 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVN- 210 (408)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~- 210 (408)
|++|+. +.+|.|.++.+.|.+|+.+.+++++..+++.++++.++...+..+|+|+.+..+.....|.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 999966 7899999999999999999999999999999999999999888999998876777888898888 5555555
Q ss_pred EEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcc--cccCCcC--CHHHHHHHHhcCCCCceEeeccccccccccCCccE
Q 015368 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKA--TPFRHQF--TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ 286 (408)
Q Consensus 211 f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~--~~y~g~~--~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~ 286 (408)
|+.+.+..+...++.. .+.+++++..+... ..|.|+. +.++|.+||..+++|++.+++..++..++..+ |.
T Consensus 162 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAF----PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred EEecCCHHHHhhcCCC----CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 5556677788888876 37777776544333 4677765 55899999999999999999999999999877 66
Q ss_pred EEEEeeCCC----chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC-ccccCC
Q 015368 287 LWLFAPAYG----SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLN 360 (408)
Q Consensus 287 ~i~f~~~~~----~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~-~~y~~~ 360 (408)
+++|..... ++++.+.++++|+++++ . +.|+++|+... .++++.+|++....|.+++++.++ .+|.+.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---i~f~~~d~~~~---~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~ 310 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKF---VNFAVADEEDF---GRELEYFGLKAEKFPAVAIQDLEGNKKYPMD 310 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCe---EEEEEecHHHh---HHHHHHcCCCccCCceEEEEeCCcccccCCC
Confidence 666655432 37888999999999997 7 99999998753 478899999877789999998854 788887
Q ss_pred C-CCChHHHHHHHHHHhcCcc--ccccccCchh----hhcCccCCccceeeec
Q 015368 361 G-ELTLSSIKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT 406 (408)
Q Consensus 361 ~-~~~~~~i~~Fi~~~~~gk~--~~kse~iP~~----~~~~~~~~~~~~~~~~ 406 (408)
+ .++.++|.+|++++++|++ +++||++|++ +.+++++||++.+++.
T Consensus 311 ~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~ 363 (462)
T TIGR01130 311 QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE 363 (462)
T ss_pred cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccC
Confidence 7 8999999999999999999 8999999983 7889999999887653
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=6e-39 Score=270.36 Aligned_cols=311 Identities=21% Similarity=0.310 Sum_probs=259.6
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-----CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-----~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
++..|++.++..++.++|.|||+||+.++.++|.|+++|..++. ++.++.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 35678888998899999999999999999999999999988765 8999999999999999999999999999999
Q ss_pred CCeEeE-EeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEE
Q 015368 136 AGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQ 213 (408)
Q Consensus 136 ~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~ 213 (408)
+|.... .|.|.++.+.+.+||++.+..++.++.+.++++.....++..+|++|...+++.+..+..+| -++.++.|..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 996654 79999999999999999999999999999999999888888999999988999999999987 6788999887
Q ss_pred ecCHhHHhhcCCCCCCCCCeEEEeecCCCc-ccccCCcCCH-HHHHHHHhcCCCCceEeeccccccccccCCccEEEEEe
Q 015368 214 TTSADVAEFFHIHPKSKRPALIFLHLEAGK-ATPFRHQFTR-LAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA 291 (408)
Q Consensus 214 ~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~-~~~y~g~~~~-~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~ 291 (408)
.....+. ...-. +.+ +++++.+... ...|.|+++. +.+.+||.+.+.|+|+++|.+|..++.+.+.|.+|+|.
T Consensus 161 ~~gD~~~-~~~~~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~ 235 (375)
T KOG0912|consen 161 GFGDLLK-PHEPP---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFR 235 (375)
T ss_pred ecccccc-CCCCC---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEe
Confidence 6533211 11111 223 5556654322 2379999765 99999999999999999999999999999999999999
Q ss_pred eCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccC---CCCCChHHH
Q 015368 292 PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL---NGELTLSSI 368 (408)
Q Consensus 292 ~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~---~~~~~~~~i 368 (408)
.+++......--..+++++.+..+.++|...|+... . .-+.++|-+++++|+++|... .++|.+ ++...+..|
T Consensus 236 ~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f--~-hpL~HlgKs~~DLPviaIDsF-~Hmylfp~f~di~~pGkL 311 (375)
T KOG0912|consen 236 KKDDKESEKIFKNAIARELDDETLAINFLTADGKVF--K-HPLRHLGKSPDDLPVIAIDSF-RHMYLFPDFNDINIPGKL 311 (375)
T ss_pred cCCcccHHHHHHHHHHHHhhhhhhccceeecCccee--c-chHHHhCCCcccCcEEEeecc-ceeeecCchhhhcCccHH
Confidence 988844443334467888765434488999997654 3 445899999999999999886 677765 346678899
Q ss_pred HHHHHHHhcCcc
Q 015368 369 KSFGEEFLEDKL 380 (408)
Q Consensus 369 ~~Fi~~~~~gk~ 380 (408)
.+|+.|+.+|++
T Consensus 312 kqFv~DL~sgkl 323 (375)
T KOG0912|consen 312 KQFVADLHSGKL 323 (375)
T ss_pred HHHHHHHhCchh
Confidence 999999999999
No 5
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=240.53 Aligned_cols=292 Identities=18% Similarity=0.205 Sum_probs=222.8
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCC
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 148 (408)
....|+|.||||||.||+++.|.|+++.-++++ .+.++++||+..+.++.+|||+||||+.++++| ....|.|+++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-~a~dYRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-HAIDYRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-eeeecCCCcc
Confidence 456899999999999999999999999988877 799999999999999999999999999999988 8899999999
Q ss_pred HHHHHHHHHhHhCCCcccccC-hhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhc-cCCceeEEEecCHhHHhh-cCC
Q 015368 149 RDVISAWVREKMTLGTYSITT-TDEAERILTVESKLVLGFLHDLEGMESEELAAASK-LHSDVNFYQTTSADVAEF-FHI 225 (408)
Q Consensus 149 ~~~l~~~i~~~~~~~~~~i~~-~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~-~~~~~~f~~~~~~~l~~~-~~i 225 (408)
.+.|.+|..+..++-+..|++ .-++.++...+.+.++ |+....++....|..+|. ......|+.. +++++.. ...
T Consensus 121 Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffV-f~Gtge~PL~d~fidAASe~~~~a~FfSa-seeVaPe~~~~ 198 (468)
T KOG4277|consen 121 KDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFV-FFGTGEGPLFDAFIDAASEKFSVARFFSA-SEEVAPEENDA 198 (468)
T ss_pred HHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEE-EEeCCCCcHHHHHHHHhhhheeeeeeecc-ccccCCcccch
Confidence 999999999999888888865 3334444455555554 777778999999999884 4333444443 3344433 334
Q ss_pred CCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEeeC-------CCchH
Q 015368 226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPA-------YGSDK 298 (408)
Q Consensus 226 ~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~-------~~~~~ 298 (408)
+. .|++.+|+.+ .+..|. +.+.+++.+||+..++|-+-..+..++.++-.+++.+++...+. ....+
T Consensus 199 ke---mpaV~VFKDe--tf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~ 272 (468)
T KOG4277|consen 199 KE---MPAVAVFKDE--TFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHRE 272 (468)
T ss_pred hh---ccceEEEccc--eeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHH
Confidence 43 6999999865 333332 34578999999999999999999999888888887444433332 22567
Q ss_pred HHHHHHHHHHHhcCCc---ceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCC----CCChHHHHHH
Q 015368 299 VILTFEEVAKALKGKV---NMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG----ELTLSSIKSF 371 (408)
Q Consensus 299 ~~~~~~~vA~~~~~~~---~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~----~~~~~~i~~F 371 (408)
+....+++|+++++.| +++.|+|+|+++. .+.+-.+.-..|.+++++..+..|.+.. ..+.+.|.+|
T Consensus 273 ~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~------~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqF 346 (468)
T KOG4277|consen 273 FHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL------ANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQF 346 (468)
T ss_pred HHHHHHHHHHHHHhChhhhhhceeeccchhHH------HHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHH
Confidence 8888889999888643 4589999997643 2333334444689999998777776632 5778899999
Q ss_pred HHHHhcC
Q 015368 372 GEEFLED 378 (408)
Q Consensus 372 i~~~~~g 378 (408)
|++-..|
T Consensus 347 ientseg 353 (468)
T KOG4277|consen 347 IENTSEG 353 (468)
T ss_pred Hhccccc
Confidence 9994444
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=100.00 E-value=4.7e-30 Score=221.52 Aligned_cols=321 Identities=17% Similarity=0.223 Sum_probs=238.9
Q ss_pred ccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHh-----hhH-HHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCC
Q 015368 53 LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK-----LAP-EFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNI 125 (408)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~-----~~p-~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i 125 (408)
.....+++|+.+||.+++++.+.++|+||.|--..--. +.. .++-.|+.+.. +|.|+.||..++..+++++|+
T Consensus 31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 34578999999999999999999999999886432111 112 23444555544 999999999999999999999
Q ss_pred CcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-
Q 015368 126 LAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS- 203 (408)
Q Consensus 126 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a- 203 (408)
...+++++|++| .+..|.|.++++.+..||...+..++..|++..+++.|-+ ...+-+|+||.+..+..++.|..+|
T Consensus 111 ~E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe 189 (383)
T PF01216_consen 111 EEEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAE 189 (383)
T ss_dssp -STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHH
T ss_pred cccCcEEEEECC-cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHH
Confidence 999999999999 7788999999999999999999999999999999998887 4478999999998888999999999
Q ss_pred ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-CCHHHHHHHHhcCCCCceEeeccccccccccC
Q 015368 204 KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD 282 (408)
Q Consensus 204 ~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~ 282 (408)
.+.+.+.|+.+.+..++++++++ ...+-+|++.-..++...|+ .+.+++.+||+.|+.|.++.|+.+++......
T Consensus 190 ~F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wed 265 (383)
T PF01216_consen 190 HFQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWED 265 (383)
T ss_dssp HCTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHS
T ss_pred hhcCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcc
Confidence 79999999999999999999997 58899999988888888876 67799999999999999999999998887776
Q ss_pred Cc--cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccccchhhhccCCCCCCcEEEEEcc---CC
Q 015368 283 PR--KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVGRRVSQEFGVSGNAPRVIAYSAR---DA 354 (408)
Q Consensus 283 ~~--~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~p~i~i~~~---~~ 354 (408)
.. .+++.|+..++ -.+++..++++|++...+ +++.++|+|-++. -.....-+.|||+-. .|.|.+.+. .+
T Consensus 266 d~~g~hIvaFaee~dpdG~efleilk~va~~nt~n-p~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdads 343 (383)
T PF01216_consen 266 DIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDN-PDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADS 343 (383)
T ss_dssp SSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEE
T ss_pred cCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcC-CceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEecccccc
Confidence 55 67778887766 568899999999999865 3599999998876 223455689999876 588888887 34
Q ss_pred ccccCCC---CCChHHHHHHHHHHhcCcc
Q 015368 355 KKYVLNG---ELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 355 ~~y~~~~---~~~~~~i~~Fi~~~~~gk~ 380 (408)
.++.|++ ..+.+.++.||+++++|++
T Consensus 344 vW~dm~d~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 344 VWMDMDDDDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp EEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred chhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence 5666654 4678999999999999987
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=1.7e-24 Score=164.94 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=95.2
Q ss_pred CCCcEEcChhhHHHH---HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH-HHcCCCcCcE
Q 015368 55 AKDVVSLNGKNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA-KEYNILAYPT 130 (408)
Q Consensus 55 ~~~~~~l~~~~~~~~---~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~-~~~~i~~~Pt 130 (408)
.+.+.+|++.+|++. +.++++++|.||||||++|+.++|.++++++.+++.+.|++|||+++.++| ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 357899999999986 578899999999999999999999999999999888999999999999999 5899999999
Q ss_pred EEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368 131 LYLFVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
+.+|++|+...+|.|.++.+.|..|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999998889999999999998874
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=1e-23 Score=159.93 Aligned_cols=99 Identities=23% Similarity=0.524 Sum_probs=94.3
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (408)
.++.|+.++|+..+.++++++|.|||+||++|+++.|.|+++++.+++.+.|+.|||++++.+|++++|+++||+++|++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 57789999999999888999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEeEEeeCCCCHHHHHHH
Q 015368 137 GVRQFQFFGERTRDVISAW 155 (408)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~ 155 (408)
|+.+.+|.|.++.+.|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9888999999999999877
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-23 Score=161.09 Aligned_cols=106 Identities=24% Similarity=0.395 Sum_probs=98.8
Q ss_pred CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368 56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (408)
..+..++..+|++.+ +++.||+|+|||+||+||+.+.|.+++++.+|.+.+.++.||.|++.+++.+|+|..+||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 355678889998555 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 135 VAGVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
+||+...++.|..+.+.+..||++.+.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999999998763
No 10
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=2e-22 Score=161.03 Aligned_cols=133 Identities=22% Similarity=0.416 Sum_probs=120.2
Q ss_pred CccccccChhhhhhhccCCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcE
Q 015368 28 SHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD 107 (408)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~ 107 (408)
+|+..++.+.......++|+..........+.+++..+|+..+.++++++|+|||+||++|+.+.|.+.++++++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~ 86 (139)
T PRK10996 7 SCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVR 86 (139)
T ss_pred CCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeE
Confidence 45566777777777788888866666667788899999999998899999999999999999999999999999988999
Q ss_pred EEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 108 LVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 108 ~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
++.||++++++++++|+|.++|++++|++|+.+.++.|..+.+.|.+|+++.+
T Consensus 87 ~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 87 FVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998753
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.89 E-value=3.9e-22 Score=152.14 Aligned_cols=102 Identities=28% Similarity=0.566 Sum_probs=97.3
Q ss_pred cEEcChhhHHHHHcC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (408)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++++.|+.|||++++++|++|+|.++||+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 467899999999976 8999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CeEeEEeeCCCCHHHHHHHHHhH
Q 015368 137 GVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
|+...+|.|.++.+.|.+||+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999875
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.89 E-value=1.5e-22 Score=154.50 Aligned_cols=100 Identities=31% Similarity=0.544 Sum_probs=92.4
Q ss_pred CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
.+..++.++|++.+ .++++++|.|||+||++|+.+.|.|+++++++++.+.++.|||++++++|++++|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 46789999999876 56779999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eEeEEeeCCCC-HHHHHHHH
Q 015368 136 AG-VRQFQFFGERT-RDVISAWV 156 (408)
Q Consensus 136 ~g-~~~~~~~g~~~-~~~l~~~i 156 (408)
+| +.+.+|.|..+ .++|.+||
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 77 88899999987 99998885
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.89 E-value=3.3e-22 Score=153.18 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=95.1
Q ss_pred cCCCcEEcChhhHHHHHc-CCCcEEEEEecCCChh--HH--hhhHHHHHHHHHh--cCCcEEEEEeCcccHhHHHHcCCC
Q 015368 54 YAKDVVSLNGKNFSEFMG-KNRNVMVMFYANWCYW--SK--KLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNIL 126 (408)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~--C~--~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~ 126 (408)
....+..||+++|++.+. ++.++++.|||+||++ |+ .+.|.+.+++.++ .+++.|++||+++++++|++|||+
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 446888999999998774 4568999999999976 99 8889999999888 669999999999999999999999
Q ss_pred cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
++||+++|++|+.+. |.|.++.+.|.+||.+.+
T Consensus 87 ~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999998665 999999999999998764
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=2.5e-22 Score=154.17 Aligned_cols=100 Identities=35% Similarity=0.621 Sum_probs=92.1
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC------CcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------EADLVMVDAYLEKDLAKEYNILAYPT 130 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~------~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (408)
.+..+++++|++.+.++++++|.|||+||++|+++.|.|+++++.+++ .+.++.|||++++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 577899999999998889999999999999999999999999988642 48999999999999999999999999
Q ss_pred EEEEeCCe-EeEEeeCCCCHHHHHHHH
Q 015368 131 LYLFVAGV-RQFQFFGERTRDVISAWV 156 (408)
Q Consensus 131 ~~~~~~g~-~~~~~~g~~~~~~l~~~i 156 (408)
+++|++|+ ....|.|.++.++|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997 458899999999999885
No 15
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=2.4e-21 Score=165.14 Aligned_cols=106 Identities=34% Similarity=0.546 Sum_probs=97.8
Q ss_pred CCcEEcChhhHHHHHcC-----CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368 56 KDVVSLNGKNFSEFMGK-----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~~-----~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (408)
..+.++++++|++.+.. +++++|+|||+||++|+++.|.|+++++++++.+.++.|||+++++++++|+|+++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 57899999999987742 4799999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
+++|++|+....+.|.++.+++.+|+.+...
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999777777889999999999988863
No 16
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=1.2e-21 Score=148.54 Aligned_cols=99 Identities=27% Similarity=0.503 Sum_probs=90.4
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
.+.+++.++|++.+. ++ ++|+|||+||++|+++.|.|+++++.+++ ++.++.|||++++.++++|+|.++||+++++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 578899999998874 33 78999999999999999999999998866 7999999999999999999999999999999
Q ss_pred CCeEeEEeeCCCCHHHHHHHHHh
Q 015368 136 AGVRQFQFFGERTRDVISAWVRE 158 (408)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (408)
+|+ +.+|.|.++.++|.+|+++
T Consensus 80 ~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCC-EEEecCCCCHHHHHHHHhC
Confidence 996 5889999999999999864
No 17
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.5e-22 Score=168.62 Aligned_cols=107 Identities=23% Similarity=0.423 Sum_probs=100.8
Q ss_pred CCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (408)
..+.++|..||...+ ...+||+|+||||||++|+++.|.+++++.+|++++.+++||||+++.++.+|||+++||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 359999999999766 33469999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368 133 LFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (408)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (408)
+|.+|+.+.-|.|....+.+.+|+.+.++.
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999999876
No 18
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.87 E-value=2.1e-21 Score=164.59 Aligned_cols=177 Identities=25% Similarity=0.398 Sum_probs=151.4
Q ss_pred ecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-CCHHHHHHHHhcCCC
Q 015368 188 LHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKH 265 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~ 265 (408)
|.+.++...+.|..+| .+.+++.|+.+.+.++++.++++ .|++++|+..++.+..|.|. ++.++|.+||..+++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~----~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIK----EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCS----SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCC----CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3455677888999988 78889999999999999999998 39999999987788999998 899999999999999
Q ss_pred CceEeeccccccccccCCcc-EEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368 266 PLVVTLTIHNAQFVFQDPRK-QLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN 342 (408)
Q Consensus 266 p~v~~lt~~~~~~~~~~~~~-~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~ 342 (408)
|++.++|.+++..++..+.+ ++++|.+.+. .+.+...++++|++++++ +.|+|+|++.. +++++.+|+++.
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~---~~~~~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF---PRLLKYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT---HHHHHHTTTTTS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh---HHHHHHcCCCCc
Confidence 99999999999999999986 6666765433 678888899999999999 99999998843 467899999988
Q ss_pred CCcEEEEEcc-CCcc-ccCCCCCChHHHHHHHHH
Q 015368 343 APRVIAYSAR-DAKK-YVLNGELTLSSIKSFGEE 374 (408)
Q Consensus 343 ~~p~i~i~~~-~~~~-y~~~~~~~~~~i~~Fi~~ 374 (408)
..|.+++.+. ++++ |.++++++.++|.+|+++
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 8999999996 4443 346889999999999986
No 19
>PHA02278 thioredoxin-like protein
Probab=99.87 E-value=2.9e-21 Score=144.76 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=85.1
Q ss_pred hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcEEEEEeCCe
Q 015368 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 63 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
.++|++.+.++++++|+|||+||+||+.+.|.++++++++..++.|+.||++.+ ++++++|+|.++||+++|++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 567888888899999999999999999999999999988665788999999986 6899999999999999999999
Q ss_pred EeEEeeCCCCHHHHHHH
Q 015368 139 RQFQFFGERTRDVISAW 155 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~ 155 (408)
.+.++.|..+.+.+.+|
T Consensus 84 ~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEeCCCCHHHHHhh
Confidence 99999999999888775
No 20
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.86 E-value=3e-21 Score=146.84 Aligned_cols=98 Identities=32% Similarity=0.619 Sum_probs=91.1
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (408)
+..+++++|+..+.++ +++|+|||+||++|+.+.|.++++++++++ ++.++.|||+++..+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5688999999988665 599999999999999999999999999976 799999999999999999999999999999
Q ss_pred eCCeEeEEeeCCCCHHHHHHHH
Q 015368 135 VAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i 156 (408)
++|+.+.+|.|..+.++|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 9998888999999999998875
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.86 E-value=3.4e-21 Score=148.07 Aligned_cols=100 Identities=17% Similarity=0.331 Sum_probs=91.0
Q ss_pred EEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368 59 VSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 59 ~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (408)
..++.++|++.+ ..+++++|+||||||++|+.+.|.++++++++++ ++.++.|||++++.++++++|.++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 356778887544 3679999999999999999999999999999976 699999999999999999999999999999
Q ss_pred eCCeEeEEeeCCCCHHHHHHHHHh
Q 015368 135 VAGVRQFQFFGERTRDVISAWVRE 158 (408)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~ 158 (408)
++|+.+.++.|..+.+.|.+||++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999888889999999999999975
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=99.86 E-value=9.4e-21 Score=145.77 Aligned_cols=106 Identities=21% Similarity=0.406 Sum_probs=98.2
Q ss_pred CCCcEEcChhhHHHH-HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368 55 AKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (408)
Q Consensus 55 ~~~~~~l~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (408)
++.+..+++++|++. +..+++++|+||++||++|+.+.|.++++++.+.+++.++.||++.++.++++|++.++||+++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 357888999999864 5668899999999999999999999999999998899999999999999999999999999999
Q ss_pred EeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 134 FVAGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
|++|+...++.|..+.+.|..+|.+.+
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999988889999999999999998765
No 23
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.86 E-value=2.5e-21 Score=145.67 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=80.9
Q ss_pred hhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368 63 GKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (408)
Q Consensus 63 ~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (408)
.++|+..+. .+++++|.|||+||+||+.+.|.++++++++.+.+.|+.||++++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 456777774 578999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHH
Q 015368 141 FQFFGERTRDVI 152 (408)
Q Consensus 141 ~~~~g~~~~~~l 152 (408)
.+..|..+...|
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 988886655443
No 24
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.4e-20 Score=175.36 Aligned_cols=276 Identities=21% Similarity=0.311 Sum_probs=194.0
Q ss_pred HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeC
Q 015368 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 145 (408)
+......+++++|.||||||+||+++.|+|.++++.+++.+.++.|||+++.++|++|+|+++||+.+|..|..+..|.|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSG 119 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccC
Confidence 33455778899999999999999999999999999999999999999999999999999999999999998867889999
Q ss_pred CCCHHHHHHHHHhHhCCCccccc-------ChhHHHHHh-ccCCeEEEEEecCCCCc---CHHHHHHHhc-c--CCceeE
Q 015368 146 ERTRDVISAWVREKMTLGTYSIT-------TTDEAERIL-TVESKLVLGFLHDLEGM---ESEELAAASK-L--HSDVNF 211 (408)
Q Consensus 146 ~~~~~~l~~~i~~~~~~~~~~i~-------~~~~~~~~~-~~~~~~vi~f~~~~~~~---~~~~~~~~a~-~--~~~~~f 211 (408)
..+.+.+..|+...+.+.+.... +...+.... +.+..+++.|+.+||.. ..+.+..++. + ...+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~ 199 (383)
T KOG0191|consen 120 PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVEL 199 (383)
T ss_pred cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEE
Confidence 99999999999998865543332 223344333 45678999999999985 3455666663 3 356666
Q ss_pred EEec---CHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCc-----eEeecccc-ccccccC
Q 015368 212 YQTT---SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL-----VVTLTIHN-AQFVFQD 282 (408)
Q Consensus 212 ~~~~---~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~-----v~~lt~~~-~~~~~~~ 282 (408)
+... ...++..+++. ++|++.+|+.++.....|.|.++.+.+.+|++....+. +.+..... ....+..
T Consensus 200 ~~~d~~~~~~~~~~~~v~---~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 276 (383)
T KOG0191|consen 200 GKIDATVHKSLASRLEVR---GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLD 276 (383)
T ss_pred EeeccchHHHHhhhhccc---CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhh
Confidence 6553 67889999999 59999999987643567778899999999999866552 23322221 1111111
Q ss_pred ---------C--ccEEEEEeeCCC-chHHHHHHHHHHHH---hcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEE
Q 015368 283 ---------P--RKQLWLFAPAYG-SDKVILTFEEVAKA---LKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 347 (408)
Q Consensus 283 ---------~--~~~~i~f~~~~~-~~~~~~~~~~vA~~---~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i 347 (408)
. ...+-++..+.. +......+...|.. ...+ +.+..+++.... .++..... ...|.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~~~~~~---~~~~~~~~--~~~~~~ 348 (383)
T KOG0191|consen 277 TAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSK---IKAAKLDCALLK---SLCQKAIV--RGYPTI 348 (383)
T ss_pred hhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhcccccccc---ceeecccccccc---chhhHhhh--hcCcee
Confidence 0 012223334433 34445556666666 3344 778888876543 24433333 224555
Q ss_pred EEEcc
Q 015368 348 AYSAR 352 (408)
Q Consensus 348 ~i~~~ 352 (408)
.+.+.
T Consensus 349 ~~~~~ 353 (383)
T KOG0191|consen 349 KLYNY 353 (383)
T ss_pred Eeecc
Confidence 55543
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.85 E-value=6.1e-21 Score=147.00 Aligned_cols=99 Identities=36% Similarity=0.589 Sum_probs=91.0
Q ss_pred cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEE
Q 015368 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~ 134 (408)
+..+++++|+..+ ..+++++|.|||+||++|+++.|.++++++.+++.+.++.|||++ ++++|++|+|+++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 5689999999877 557789999999999999999999999999998889999999999 8899999999999999999
Q ss_pred eCCe-----EeEEeeCCCCHHHHHHHH
Q 015368 135 VAGV-----RQFQFFGERTRDVISAWV 156 (408)
Q Consensus 135 ~~g~-----~~~~~~g~~~~~~l~~~i 156 (408)
++|+ ....|.|.++.+.|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 9774 467899999999999997
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.85 E-value=1.1e-20 Score=141.83 Aligned_cols=93 Identities=27% Similarity=0.409 Sum_probs=85.4
Q ss_pred hHHHHH-cC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEE
Q 015368 65 NFSEFM-GK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ 142 (408)
Q Consensus 65 ~~~~~~-~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 142 (408)
+|++.+ .. +++++|+|||+||++|+.+.|.+.++++.+.+.+.++.||++++++++++|+|.++|++++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 466555 33 6799999999999999999999999999998889999999999999999999999999999999988889
Q ss_pred eeCCCCHHHHHHHHH
Q 015368 143 FFGERTRDVISAWVR 157 (408)
Q Consensus 143 ~~g~~~~~~l~~~i~ 157 (408)
+.|..+.+.|..||+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999873
No 27
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.85 E-value=1.2e-19 Score=156.55 Aligned_cols=182 Identities=12% Similarity=0.173 Sum_probs=137.8
Q ss_pred CCcEEEEEec---CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe-EEeeCCC
Q 015368 73 NRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGER 147 (408)
Q Consensus 73 ~~~~~v~f~a---~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~-~~~~g~~ 147 (408)
+...++.|++ +||++|+.+.|.++++++.+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3455667888 9999999999999999999864 466777777799999999999999999999999876 5899999
Q ss_pred CHHHHHHHHHhHhC--CCcccccChhHHHHHhccC-CeEEEEEecCCCCcCHHH---HHHHhccCCceeEEEe---cCHh
Q 015368 148 TRDVISAWVREKMT--LGTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT---TSAD 218 (408)
Q Consensus 148 ~~~~l~~~i~~~~~--~~~~~i~~~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~---~~~~ 218 (408)
+.+++.+||+..+. .....+ +.+..+.+.... +..++.|+++||.++... +..++...+++.+..+ .+++
T Consensus 99 ~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~ 177 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD 177 (215)
T ss_pred CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH
Confidence 99999999988853 222233 434444444433 445555899999986543 3444433456666543 6778
Q ss_pred HHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 219 l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (408)
+++++++. +.|++++++.+ . .+.|....+++.+|+..
T Consensus 178 ~~~~~~V~---~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 178 LAEKYGVM---SVPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHhCCc---cCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 99999998 59999988643 2 27788888999999864
No 28
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=7.7e-21 Score=142.83 Aligned_cols=84 Identities=26% Similarity=0.626 Sum_probs=79.2
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (408)
.++++++|+|||+||++|+.++|.|+++++.++ ++.++.||++ ++++++++|+|.++||+++|++| .+.+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 578999999999999999999999999999997 5889999999 88999999999999999999999 88999999999
Q ss_pred HHHHHHH
Q 015368 150 DVISAWV 156 (408)
Q Consensus 150 ~~l~~~i 156 (408)
++|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 29
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.85 E-value=2.8e-20 Score=141.02 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=82.0
Q ss_pred ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH---hHHHHcCCCcCcEEEEEeC
Q 015368 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVA 136 (408)
Q Consensus 62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~i~~~Pt~~~~~~ 136 (408)
+.++|++.+. ++++++|+|||+||++|+.++|.++++++++ .++.|+.||++++. +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 3567887774 3799999999999999999999999999999 58999999999874 8999999999999999999
Q ss_pred CeEeEEeeCCCCHHHHHHHHH
Q 015368 137 GVRQFQFFGERTRDVISAWVR 157 (408)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~ 157 (408)
|+.+.++.|. ..+.+.+.+.
T Consensus 81 G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred CeEEEEEeCC-CHHHHHHHHH
Confidence 9999999995 4566666554
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.84 E-value=2.3e-20 Score=142.56 Aligned_cols=99 Identities=40% Similarity=0.694 Sum_probs=92.3
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcc--cHhHHHHcCCCcCcEEEE
Q 015368 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL--EKDLAKEYNILAYPTLYL 133 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~ 133 (408)
+..+++.+|+..+.++++++|+|||+||++|+++.|.+.++++.++ +.+.++.+||+. ++.++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 5678899999999888999999999999999999999999999987 478999999998 899999999999999999
Q ss_pred EeCCeEeEEeeCCCCHHHHHHHH
Q 015368 134 FVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
|++|+.+.++.|..+.+.+.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99998889999999999998885
No 31
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.84 E-value=3.7e-20 Score=140.16 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=87.6
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (408)
-+.++|+..+.++++++|+|||+||++|+.+.|.+.++++.+++ .+.|+.+|++ +.+++++|+|+++||+++|++|+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 36788999888899999999999999999999999999999986 5889999999 778999999999999999999988
Q ss_pred eEEeeCCCCHHHHHHHHHh
Q 015368 140 QFQFFGERTRDVISAWVRE 158 (408)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~ 158 (408)
+.+..|. +.+.+.++|.+
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 8899895 88889888864
No 32
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.84 E-value=3.9e-20 Score=140.96 Aligned_cols=99 Identities=37% Similarity=0.593 Sum_probs=91.1
Q ss_pred cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (408)
Q Consensus 58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (408)
+.++++.+|++.+ ..+++++|.||++||++|+++.|.|.++++.+.+.+.++.+||+++++++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 5688999999877 445669999999999999999999999999998899999999999999999999999999999998
Q ss_pred C-eEeEEeeCCCCHHHHHHHH
Q 015368 137 G-VRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 137 g-~~~~~~~g~~~~~~l~~~i 156 (408)
| .....|.|.++.++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 5678899999999999997
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.84 E-value=3.1e-20 Score=141.28 Aligned_cols=99 Identities=40% Similarity=0.702 Sum_probs=92.4
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
|++++|+..+.++++++|+||++||++|+.+.|.++++++.+++ ++.++.+||++++.++++|+|.++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 56789998888899999999999999999999999999999987 6999999999999999999999999999999775
Q ss_pred EeEEeeCCCCHHHHHHHHHhH
Q 015368 139 RQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (408)
.+.+|.|.++.+.|..||.++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 588999999999999999875
No 34
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.83 E-value=1.5e-19 Score=144.73 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=83.0
Q ss_pred CCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCc-----
Q 015368 56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA----- 127 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~----- 127 (408)
..+..++.++|++.+. .+++++|+|||+||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 5788899999998773 356899999999999999999999999999975 69999999999999999999988
Q ss_pred -CcEEEEEeCCeEeEEeeC
Q 015368 128 -YPTLYLFVAGVRQFQFFG 145 (408)
Q Consensus 128 -~Pt~~~~~~g~~~~~~~g 145 (408)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 35
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.83 E-value=2.5e-20 Score=140.75 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=87.2
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEec--CCCh---hHHhhhHHHHHHHHHhcCCcEEEEEeC-----cccHhHHHHcCCC
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYA--NWCY---WSKKLAPEFAAAAKMLKGEADLVMVDA-----YLEKDLAKEYNIL 126 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a--~wC~---~C~~~~p~~~~~~~~~~~~v~~~~v~~-----~~~~~~~~~~~i~ 126 (408)
.++.|+..+|++.+.+++.+||.||| |||+ +|++++|++.+.+. .|.++.||| .++.+||++|+|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 46789999999999999999999999 8888 77777777766654 389999999 4678899999999
Q ss_pred --cCcEEEEEeCCe--EeEEeeCC-CCHHHHHHHHHhH
Q 015368 127 --AYPTLYLFVAGV--RQFQFFGE-RTRDVISAWVREK 159 (408)
Q Consensus 127 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 159 (408)
+|||+.+|++|. ....|.|. ++.+.|.+||+++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999884 56789997 9999999999875
No 36
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=6.8e-20 Score=140.58 Aligned_cols=100 Identities=23% Similarity=0.517 Sum_probs=88.6
Q ss_pred CcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-cHhHHHH-cCCCcCcE
Q 015368 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKE-YNILAYPT 130 (408)
Q Consensus 57 ~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-~~~~~~~-~~i~~~Pt 130 (408)
.+.+++.++|+..+ .++++++|.|||+||++|+++.|.|.++++.+++ ++.++.|||+. +..+|++ ++++++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 57789999999777 3578999999999999999999999999999987 69999999998 5788874 99999999
Q ss_pred EEEEeCC-eEeEEeeCC-CCHHHHHHHH
Q 015368 131 LYLFVAG-VRQFQFFGE-RTRDVISAWV 156 (408)
Q Consensus 131 ~~~~~~g-~~~~~~~g~-~~~~~l~~~i 156 (408)
+++|++| .....|.|. ++.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999854 567889995 8999998885
No 37
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.83 E-value=9.3e-20 Score=136.08 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=91.4
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCC--ChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (408)
....++..+|++.+..+.+++|.|||+| |++|+.+.|.++++++++.+.+.|+.||++++++++.+|+|+++||+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 4567899999998888899999999997 99999999999999999998899999999999999999999999999999
Q ss_pred eCCeEeEEeeCCCCHHHHH
Q 015368 135 VAGVRQFQFFGERTRDVIS 153 (408)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~ 153 (408)
++|+.+.++.|..+.+++.
T Consensus 91 kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 91 RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ECCEEEEEEeCccCHHHHh
Confidence 9999999999999988765
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.81 E-value=2.1e-19 Score=137.22 Aligned_cols=98 Identities=34% Similarity=0.641 Sum_probs=88.8
Q ss_pred cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (408)
+..|++++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++ ++.++.+||+++ +++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 5689999999877 4468999999999999999999999999999976 699999999987 68899999999999999
Q ss_pred eCCe--EeEEeeCCCCHHHHHHHH
Q 015368 135 VAGV--RQFQFFGERTRDVISAWV 156 (408)
Q Consensus 135 ~~g~--~~~~~~g~~~~~~l~~~i 156 (408)
.+|+ ...+|.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9886 578899999999999885
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.80 E-value=4.4e-19 Score=135.05 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=84.2
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (408)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (408)
++|++. .++++++|.|||+||++|+++.|.++++++.+++ .+.++.+||++.++++++|+|.++||+++|++| ..
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 567664 4577999999999999999999999999999854 599999999999999999999999999999877 56
Q ss_pred EEeeCCCCHHHHHHHHHhH
Q 015368 141 FQFFGERTRDVISAWVREK 159 (408)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~ 159 (408)
.++.|..+.+.+.+|+++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 7899999999999999864
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.80 E-value=4.8e-19 Score=135.48 Aligned_cols=99 Identities=36% Similarity=0.672 Sum_probs=89.4
Q ss_pred cEEcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcc-cHhHHHHcCCCcCcEEEE
Q 015368 58 VVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL-EKDLAKEYNILAYPTLYL 133 (408)
Q Consensus 58 ~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~ 133 (408)
+..+++++|+..+. .+++++|.||++||++|+++.|.|.++++.++ +++.++.+||+. ++++|++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 46788899998775 45599999999999999999999999999997 379999999999 999999999999999999
Q ss_pred EeCC-eEeEEeeCCCCHHHHHHHH
Q 015368 134 FVAG-VRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 134 ~~~g-~~~~~~~g~~~~~~l~~~i 156 (408)
|++| +....|.|.++.+.|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9955 6778899999999999885
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.80 E-value=1.3e-18 Score=132.05 Aligned_cols=100 Identities=28% Similarity=0.495 Sum_probs=90.9
Q ss_pred cChhhHHHHHcC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368 61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (408)
Q Consensus 61 l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (408)
++.++|...+.+ +++++|.||++||++|+.+.|.+.++++.+.+++.|+.||+++++.++++|+|.++|+++++++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 356778876644 5699999999999999999999999999998789999999999999999999999999999999988
Q ss_pred eEEeeCCCCHHHHHHHHHhHh
Q 015368 140 QFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (408)
..++.|..+.+.+.+|+++.+
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeeecCCCCHHHHHHHHHhhC
Confidence 889999999999999998753
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.80 E-value=9.6e-19 Score=140.10 Aligned_cols=98 Identities=17% Similarity=0.338 Sum_probs=88.2
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc--HhHHHHcCCCcCcEEEEEe-CCeEe
Q 015368 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV-AGVRQ 140 (408)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~-~g~~~ 140 (408)
..++..+.++++++|+|||+||++|+.+.|.+.++++.+++++.|+.||++.. .+++++|+|.++||+++|+ +|+++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 45677778899999999999999999999999999999987788888887754 5889999999999999996 89999
Q ss_pred EEeeCCCCHHHHHHHHHhHhC
Q 015368 141 FQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~~ 161 (408)
.++.|..+.+.|.++|.+.+.
T Consensus 91 ~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 91 GQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 999999999999999998873
No 43
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.80 E-value=1.4e-18 Score=135.98 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=85.3
Q ss_pred ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE-EEeCCe
Q 015368 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY-LFVAGV 138 (408)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~-~~~~g~ 138 (408)
+..+|++.+ .++++++|.|||+||+||+.+.|.++++++++++.+.|+.||+|+++++++.|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 467888777 45789999999999999999999999999999888999999999999999999999877666 888997
Q ss_pred -EeEEeeC--------CCCHHHHHHHHHhHh
Q 015368 139 -RQFQFFG--------ERTRDVISAWVREKM 160 (408)
Q Consensus 139 -~~~~~~g--------~~~~~~l~~~i~~~~ 160 (408)
.+.+..| ..+.++|.+-++..+
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 7788888 566777777666554
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.79 E-value=7.8e-19 Score=133.18 Aligned_cols=97 Identities=36% Similarity=0.680 Sum_probs=90.3
Q ss_pred EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g 137 (408)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.+ ++++.++.|||+++..++++|+|+++|++++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5788899999988889999999999999999999999999999 46999999999999999999999999999999966
Q ss_pred -eEeEEeeCCCCHHHHHHHH
Q 015368 138 -VRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (408)
....+|.|..+.+.+.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 7889999999999998875
No 45
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.79 E-value=6e-19 Score=134.40 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=84.8
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc----cHhHHHHcCCCcCcEEEEEe-
Q 015368 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFV- 135 (408)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~- 135 (408)
+.|++.+.++++++|+|||+||++|+.+.|.+ .++++.+++++.++.||+++ ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 46778888999999999999999999999988 67888887789999999987 57899999999999999998
Q ss_pred -CCeEeEEeeCCCCHHHHHHHH
Q 015368 136 -AGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 136 -~g~~~~~~~g~~~~~~l~~~i 156 (408)
+|+.+.++.|..+.++|.++|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 788889999999999998887
No 46
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.79 E-value=3.3e-18 Score=131.39 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=81.9
Q ss_pred CCcEEcCh-hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368 56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (408)
Q Consensus 56 ~~~~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (408)
..+..++. ++|.+.+.++++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 35566666 8999999888999999999999999999999999999987 599999999999999999999999999999
Q ss_pred eCCeEeEEeeCC
Q 015368 135 VAGVRQFQFFGE 146 (408)
Q Consensus 135 ~~g~~~~~~~g~ 146 (408)
++|+.+.++.|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999988887664
No 47
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-18 Score=129.72 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=78.0
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (408)
.++++++|+|||+||+||+.+.|.+.+++++|.+ +.|++||+|+..++++.++|...||+.++++|+.+.++.|....
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~- 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA- 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence 4469999999999999999999999999999997 99999999999999999999999999999999999999998544
Q ss_pred HHHHHHHh
Q 015368 151 VISAWVRE 158 (408)
Q Consensus 151 ~l~~~i~~ 158 (408)
.+.+.+..
T Consensus 97 ~l~~~i~~ 104 (106)
T KOG0907|consen 97 ELEKKIAK 104 (106)
T ss_pred HHHHHHHh
Confidence 66666543
No 48
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.78 E-value=3.2e-18 Score=132.11 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=81.2
Q ss_pred CCcEEcChhhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368 56 KDVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (408)
..+..++.++|.+.+.+. ++++|+||++||++|+.+.|.++++++++. ++.|+.||++++ +++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 456788899999887544 899999999999999999999999999987 689999999999 999999999999999
Q ss_pred EEeCCeEeEEeeCC
Q 015368 133 LFVAGVRQFQFFGE 146 (408)
Q Consensus 133 ~~~~g~~~~~~~g~ 146 (408)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999884
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.77 E-value=6e-18 Score=126.93 Aligned_cols=88 Identities=16% Similarity=0.303 Sum_probs=83.1
Q ss_pred HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (408)
Q Consensus 70 ~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (408)
.+.+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++++|.++|+++++++|+.+.++.|..+.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence 36789999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 015368 150 DVISAWVR 157 (408)
Q Consensus 150 ~~l~~~i~ 157 (408)
+++.+|++
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 99998873
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.77 E-value=6.7e-18 Score=127.00 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=82.4
Q ss_pred hhhHHHHHcCC--CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368 63 GKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (408)
Q Consensus 63 ~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (408)
.++|++.+... ++++|+||++||++|+.+.|.++++++.+..++.++.+|+++.++++++|++.++||+++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46778777555 9999999999999999999999999999766899999999999999999999999999999999888
Q ss_pred EEeeCCCCHHHHHHHH
Q 015368 141 FQFFGERTRDVISAWV 156 (408)
Q Consensus 141 ~~~~g~~~~~~l~~~i 156 (408)
.++.|. +.+.|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 888885 566666654
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.75 E-value=2e-17 Score=124.64 Aligned_cols=90 Identities=27% Similarity=0.452 Sum_probs=81.4
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeE
Q 015368 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (408)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 141 (408)
+.++++..+..+++++|+||++||++|+.+.|.++++++++. ++.++.||++++.+++++|+|.++||++++++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 456788888889999999999999999999999999999876 6999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHH
Q 015368 142 QFFGERTRDVIS 153 (408)
Q Consensus 142 ~~~g~~~~~~l~ 153 (408)
++.|. ..++|.
T Consensus 86 ~~~G~-~~~~~~ 96 (98)
T PTZ00051 86 TLLGA-NDEALK 96 (98)
T ss_pred EEeCC-CHHHhh
Confidence 99996 555554
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.74 E-value=2.4e-17 Score=154.47 Aligned_cols=108 Identities=20% Similarity=0.452 Sum_probs=93.9
Q ss_pred CCccCCCcEEcChhhHHHHHc---CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccH-hHH-HHcC
Q 015368 51 PLLYAKDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-DLA-KEYN 124 (408)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~-~~~-~~~~ 124 (408)
....+..++.|+..+|+..+. .+++++|.||||||++|+.+.|.|+++++++++ ++.|+.|||+.+. .++ ++|+
T Consensus 346 dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 346 DIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred cccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence 344567899999999998874 788999999999999999999999999999987 5999999999764 454 7899
Q ss_pred CCcCcEEEEEeCCe-EeEEee-CCCCHHHHHHHHHh
Q 015368 125 ILAYPTLYLFVAGV-RQFQFF-GERTRDVISAWVRE 158 (408)
Q Consensus 125 i~~~Pt~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~ 158 (408)
|.++||+++|++|. ....|. |.++.+.|..||+-
T Consensus 426 I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999999999874 457797 58999999999974
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=3.7e-17 Score=125.98 Aligned_cols=96 Identities=24% Similarity=0.452 Sum_probs=79.3
Q ss_pred CcEEcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcc--cHhHHHHcCCCcCcE
Q 015368 57 DVVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILAYPT 130 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~~~Pt 130 (408)
.+.+++.++|+..+. .+++++|+|||+||++|+.+.|.|+++++.+++ .+.++.|||+. ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 578899999998874 456999999999999999999999999998864 59999999864 678999999999999
Q ss_pred EEEEeCCeEe----EEeeCC-CCHHHH
Q 015368 131 LYLFVAGVRQ----FQFFGE-RTRDVI 152 (408)
Q Consensus 131 ~~~~~~g~~~----~~~~g~-~~~~~l 152 (408)
+++|++|... ..|.|+ +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999977421 345565 554444
No 54
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.73 E-value=4.7e-17 Score=121.27 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=69.9
Q ss_pred hhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368 64 KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (408)
Q Consensus 64 ~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (408)
+++++.+. ++++++|.|+|+||++|+.+.|.++++++++++.+.|+.||+|+.+++++.|+|+..||+++|++|+..
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 45666553 589999999999999999999999999999985599999999999999999999999999999999654
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=3.9e-17 Score=153.04 Aligned_cols=108 Identities=22% Similarity=0.489 Sum_probs=95.1
Q ss_pred CccCCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc-ccHhHHH-HcCC
Q 015368 52 LLYAKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LEKDLAK-EYNI 125 (408)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-~~~~~~~-~~~i 125 (408)
...+..+..|+.++|++.+ ..+++++|+||||||++|+.+.|.|+++++.+++ ++.|+.|||+ .+.++|+ +|+|
T Consensus 341 l~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 341 IFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred ccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence 3355689999999999876 4789999999999999999999999999999976 6999999999 8888997 6999
Q ss_pred CcCcEEEEEeCCe-EeEEeeC-CCCHHHHHHHHHhH
Q 015368 126 LAYPTLYLFVAGV-RQFQFFG-ERTRDVISAWVREK 159 (408)
Q Consensus 126 ~~~Pt~~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~ 159 (408)
.++||+++|.+|. ....|.| .++.+.|..|++..
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999764 5677875 69999999999753
No 56
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.73 E-value=9.9e-17 Score=124.57 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----------hHHHHcC
Q 015368 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------DLAKEYN 124 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----------~~~~~~~ 124 (408)
+.+..++.+++.+.+.+++.++|+|+++|||+|+.+.|.+.+++++. ++.++.||.+.+. ++.++|+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 35667888999999999999999999999999999999999999983 5778888887542 5556665
Q ss_pred ----CCcCcEEEEEeCCeEeEEeeC-CCCHHHHHHHHH
Q 015368 125 ----ILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (408)
Q Consensus 125 ----i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (408)
|.++||+++|++|+.+.+..| ..+.++|.+|+.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999999 456899988763
No 57
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.72 E-value=2.1e-16 Score=133.16 Aligned_cols=87 Identities=13% Similarity=0.264 Sum_probs=74.7
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----------------------hHHHHcCCCc
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------------------DLAKEYNILA 127 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----------------------~~~~~~~i~~ 127 (408)
.++++++|+|||+||++|++++|.+.++++. ++.++.|+.+++. .+++.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 4689999999999999999999999998753 6888888865432 2456789999
Q ss_pred CcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+|++++++ +|++..++.|..+.+.+.++++..+
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 99999998 9999999999999999999998776
No 58
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.72 E-value=7.7e-17 Score=127.11 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=85.2
Q ss_pred hhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHH---HHHHHhcCCcEEEEEeCccc-------------HhHHHHcCCC
Q 015368 64 KNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE-------------KDLAKEYNIL 126 (408)
Q Consensus 64 ~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i~ 126 (408)
+.+..+.+++ ++++|.|||+||++|+.++|.+. .+.+.+++++.++.||.+++ .+++++|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4566777888 99999999999999999999885 56666766788999998864 7899999999
Q ss_pred cCcEEEEEe-C-CeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 127 AYPTLYLFV-A-GVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 127 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
++||+++++ + |+.+.++.|..+.+.+.++|+..+.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999 5 6889999999999999999987653
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.71 E-value=8.7e-17 Score=156.89 Aligned_cols=115 Identities=23% Similarity=0.391 Sum_probs=101.5
Q ss_pred CCCccCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCC
Q 015368 50 WPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNIL 126 (408)
Q Consensus 50 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~ 126 (408)
.|......+..+++++|++.+ +++++++|+|||+||++|+.+.|.|+++++.+++ .+.++.+||+.+...+++++++
T Consensus 351 ~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~ 430 (477)
T PTZ00102 351 IPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWS 430 (477)
T ss_pred CCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCc
Confidence 344446678999999999874 7789999999999999999999999999999875 6999999999999999999999
Q ss_pred cCcEEEEEeCCe-EeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368 127 AYPTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (408)
Q Consensus 127 ~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (408)
++||+++|++|. ...+|.|.++.+.|.+||.++...+.
T Consensus 431 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 431 AFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred ccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 999999999664 45689999999999999999886533
No 60
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.1e-16 Score=146.20 Aligned_cols=224 Identities=16% Similarity=0.204 Sum_probs=143.8
Q ss_pred cCCCcEEcChhhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcc--cHhHHHHcCCCc
Q 015368 54 YAKDVVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILA 127 (408)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~~ 127 (408)
.++.++.|+.++|+.++... +-.+|.||++||+||+.++|.|+++++.+.+ -+.++.|||.+ |..+|+.|+|++
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 34789999999999888544 5899999999999999999999999999877 68999999975 678999999999
Q ss_pred CcEEEEEeCC----eEeEEeeCCCCHHHHHHHHHhHhC-----------C---CcccccChhHHHHHhccC-CeEEEEEe
Q 015368 128 YPTLYLFVAG----VRQFQFFGERTRDVISAWVREKMT-----------L---GTYSITTTDEAERILTVE-SKLVLGFL 188 (408)
Q Consensus 128 ~Pt~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~~~-----------~---~~~~i~~~~~~~~~~~~~-~~~vi~f~ 188 (408)
||++.+|..+ ..-..+.|.....++.+.+.+.+. | ++.+-++.+++.+..... +.+.|+|-
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e 196 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE 196 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence 9999999732 122455676667777777766652 2 344444555665554433 24444442
Q ss_pred cCCCCcCHHHHHHHhccCCceeEEEecCHhHHhh--cCCCCCCCCCeEEEeecCCCcccccCCc---CCHHHHHHHHhcC
Q 015368 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEF--FHIHPKSKRPALIFLHLEAGKATPFRHQ---FTRLAIANFVTHT 263 (408)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~--~~i~~~~~~p~l~~~~~~~~~~~~y~g~---~~~~~i~~fi~~~ 263 (408)
.....-....+..... .+.+....+.+.+.... +++. +.|..+++++++..+..-.+. .-.+.|.++|-+.
T Consensus 197 ~~~s~lg~~~~l~~l~-~~~v~vr~~~d~q~~~~~~l~~~---~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 197 TEPSDLGWANLLNDLP-SKQVGVRARLDTQNFPLFGLKPD---NFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDK 272 (606)
T ss_pred cCCcccHHHHHHhhcc-CCCcceEEEecchhccccccCCC---CchhhhhhcCCcccccccccccHHHHHHHHHHHhcCc
Confidence 2222223333333221 23344444433333333 4554 578889999887554444333 2237888888653
Q ss_pred C---CCceEeecccccccccc
Q 015368 264 K---HPLVVTLTIHNAQFVFQ 281 (408)
Q Consensus 264 ~---~p~v~~lt~~~~~~~~~ 281 (408)
. -|.+...+..+....+.
T Consensus 273 ~~a~~pt~~p~~~~~~~~~Id 293 (606)
T KOG1731|consen 273 NEASGPTLHPITATTAAPTID 293 (606)
T ss_pred cccCCCCcCcccccccchhhh
Confidence 3 34444444333444333
No 61
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.70 E-value=2.5e-16 Score=130.28 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=86.6
Q ss_pred CCCcEEcCh-hhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368 55 AKDVVSLNG-KNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (408)
Q Consensus 55 ~~~~~~l~~-~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (408)
...+.+++. ++|...+.+. .+++|.|||+||++|+.+.|.+.++++++. .+.|++||+++. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 467888988 9999887432 499999999999999999999999999986 699999999987 8999999999999
Q ss_pred EEEEeCCeEeEEeeCC-------CCHHHHHHHHHh
Q 015368 131 LYLFVAGVRQFQFFGE-------RTRDVISAWVRE 158 (408)
Q Consensus 131 ~~~~~~g~~~~~~~g~-------~~~~~l~~~i~~ 158 (408)
+++|++|+.+.++.|. .+.+.|..++.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999888877653 445555555543
No 62
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.70 E-value=2.8e-16 Score=116.93 Aligned_cols=91 Identities=26% Similarity=0.493 Sum_probs=84.3
Q ss_pred hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEee
Q 015368 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (408)
Q Consensus 65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 144 (408)
+|+..+..+++++|.||++||++|+.+.|.++++++. .+++.++.+|++.+++++++|++.++|+++++++|+....+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 5677777779999999999999999999999999988 558999999999999999999999999999999998899999
Q ss_pred CCCCHHHHHHHH
Q 015368 145 GERTRDVISAWV 156 (408)
Q Consensus 145 g~~~~~~l~~~i 156 (408)
|..+.+.|.+||
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 999999998887
No 63
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.70 E-value=2.2e-16 Score=121.42 Aligned_cols=94 Identities=14% Similarity=0.259 Sum_probs=82.2
Q ss_pred HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe--EEe
Q 015368 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQF 143 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~ 143 (408)
+.+.+.++..++|.|||+||++|+.+.|.++++++.+ +.+.+..||.+++++++++|+|.++||++++++|... .++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 5555566778999999999999999999999999887 5799999999999999999999999999999976433 378
Q ss_pred eCCCCHHHHHHHHHhHh
Q 015368 144 FGERTRDVISAWVREKM 160 (408)
Q Consensus 144 ~g~~~~~~l~~~i~~~~ 160 (408)
.|..+..++.+||...+
T Consensus 94 ~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 94 YGLPAGYEFASLIEDIV 110 (113)
T ss_pred EecCchHHHHHHHHHHH
Confidence 89999999999997654
No 64
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.1e-17 Score=150.99 Aligned_cols=115 Identities=26% Similarity=0.487 Sum_probs=98.9
Q ss_pred CCCCCCCCccC-CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHH
Q 015368 45 NNNHTWPLLYA-KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA 120 (408)
Q Consensus 45 ~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~ 120 (408)
..++..|...+ ..+..+-++||+.++ +++|.|||.||||||+||+++.|.|+++++.|++ ++.++++|.+.|. .
T Consensus 354 ~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~ 431 (493)
T KOG0190|consen 354 LKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--V 431 (493)
T ss_pred cccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--C
Confidence 34445565555 679999999999877 7889999999999999999999999999999988 8999999999885 3
Q ss_pred HHcCCCcCcEEEEEeCC--eEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 121 KEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 121 ~~~~i~~~Pt~~~~~~g--~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
....+.++||++++..| +.+..|.|.++.+++..|+.+...
T Consensus 432 ~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 432 PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 55677889999999955 368899999999999999987764
No 65
>PTZ00062 glutaredoxin; Provisional
Probab=99.69 E-value=2.5e-15 Score=126.08 Aligned_cols=162 Identities=11% Similarity=0.117 Sum_probs=113.3
Q ss_pred ChhhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (408)
Q Consensus 62 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (408)
+.+++++.+.++ ..++++|||+||++|+.+.|.+.++++++. ++.|+.||.+ |+|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 456788777654 779999999999999999999999999996 7999999976 999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEec-----CCCCcCHHHHHHHhccCCceeEEE-e
Q 015368 141 FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLH-----DLEGMESEELAAASKLHSDVNFYQ-T 214 (408)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~-----~~~~~~~~~~~~~a~~~~~~~f~~-~ 214 (408)
.++.|. ++..+..++.+..+.....- ..+.+++++++++.++ |.. ++|..+.+....+.+..-.+...- .
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvv--f~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~ 151 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILL--FMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF 151 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEE--EEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC
Confidence 999987 58899999988876544321 2234555555555333 444 466666665555554433333222 2
Q ss_pred cCHhHHhhcC-CCCCCCCCeEEE
Q 015368 215 TSADVAEFFH-IHPKSKRPALIF 236 (408)
Q Consensus 215 ~~~~l~~~~~-i~~~~~~p~l~~ 236 (408)
.+.++.+.+. .++...+|.+.+
T Consensus 152 ~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 152 EDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCHHHHHHHHHHhCCCCCCeEEE
Confidence 4555544432 121124676663
No 66
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.66 E-value=1.8e-15 Score=126.74 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=87.4
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------------------
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------- 115 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------- 115 (408)
.+..++++.++....++++++|+||++||++|+...|.+.++++++++ ++.++.|+++.
T Consensus 45 ~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 45 VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 455667766654444679999999999999999999999999999976 68999998763
Q ss_pred --cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 116 --EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 116 --~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
+..+++.|++.++|++++++ +|+++..+.|..+.+++.+++.+.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 35678999999999999998 898888999999999999988753
No 67
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1e-15 Score=126.92 Aligned_cols=99 Identities=25% Similarity=0.334 Sum_probs=88.5
Q ss_pred ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (408)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (408)
++..|+..+ ..++.++|+|+|+||+||+...|.|..++.+|. +..|.+||+|+.+..+..+||+..||+++|+||..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 456777666 456799999999999999999999999999997 79999999999999999999999999999999988
Q ss_pred eEEeeCCCCHHHHHHHHHhHhCC
Q 015368 140 QFQFFGERTRDVISAWVREKMTL 162 (408)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~~ 162 (408)
+.++.|. ++..|++.+.++...
T Consensus 87 id~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHhcc
Confidence 8888886 788899999888743
No 68
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.64 E-value=2.4e-15 Score=142.91 Aligned_cols=101 Identities=22% Similarity=0.239 Sum_probs=82.5
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEE------------------------
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV------------------------ 111 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v------------------------ 111 (408)
.+.++++++.. +.++++++|+|||+||++|+.++|.+++++++++. ++.++.|
T Consensus 42 ~l~D~dG~~v~--lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~ 119 (521)
T PRK14018 42 KTADNRPASVY--LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYP 119 (521)
T ss_pred EeecCCCceee--ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCc
Confidence 33445554433 24789999999999999999999999999999874 5666554
Q ss_pred ----eCcccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 112 ----DAYLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 112 ----~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
++|.+..+++.|+|+++|++++++ +|+++.++.|.++.++|.++|+..
T Consensus 120 ~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred ccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 345567789999999999998886 999999999999999999999843
No 69
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.63 E-value=6.7e-15 Score=118.43 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc------------HhHH-HHc---CCCcCcEEEEEe
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE------------KDLA-KEY---NILAYPTLYLFV 135 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~------------~~~~-~~~---~i~~~Pt~~~~~ 135 (408)
.++..+|+|||+||++|++++|.+++++++++ +.++.|+.++. .+.. ..| ++.++||+++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 45678999999999999999999999999984 66666666542 2333 345 889999999998
Q ss_pred -CCeE-eEEeeCCCCHHHHHHHHHhH
Q 015368 136 -AGVR-QFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 136 -~g~~-~~~~~g~~~~~~l~~~i~~~ 159 (408)
+|.. ...+.|..+.+++.+.+.+.
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 6654 45789999999999888764
No 70
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.61 E-value=4.7e-15 Score=112.77 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=78.7
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCC--cCcEEEEEeC--CeEeEEeeCCC
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLFVA--GVRQFQFFGER 147 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~~ 147 (408)
.++++++.||++||++|+.+.|.++++++++++++.|+.||+++++++++.||+. ++|+++++++ |+......|..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 3789999999999999999999999999999999999999999999999999999 9999999997 64444344556
Q ss_pred CHHHHHHHHHhH
Q 015368 148 TRDVISAWVREK 159 (408)
Q Consensus 148 ~~~~l~~~i~~~ 159 (408)
+.+.|.+|+.+.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 71
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.61 E-value=9.2e-15 Score=122.47 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=83.3
Q ss_pred CCCcEEcChhhHHHHH-cC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368 55 AKDVVSLNGKNFSEFM-GK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (408)
Q Consensus 55 ~~~~~~l~~~~~~~~~-~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (408)
.+.+..++..+|...+ .. +.+|+|.||++||++|+.+.|.|+++++++. .+.|++||++.. +..|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 4688899999998655 33 3589999999999999999999999999987 699999998753 689999999999
Q ss_pred EEEeCCeEeEEeeCC-------CCHHHHHHHHH
Q 015368 132 YLFVAGVRQFQFFGE-------RTRDVISAWVR 157 (408)
Q Consensus 132 ~~~~~g~~~~~~~g~-------~~~~~l~~~i~ 157 (408)
++|++|+.+.++.|. .+.++|..++.
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 999999998888873 45555555554
No 72
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.61 E-value=1.6e-14 Score=120.38 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=74.1
Q ss_pred HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC-----------------------cccHhHHHHcCCC
Q 015368 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA-----------------------YLEKDLAKEYNIL 126 (408)
Q Consensus 70 ~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~-----------------------~~~~~~~~~~~i~ 126 (408)
..++++++|+||++||++|++++|.++++++. ++.++.|+. |.+..+++.|++.
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 34689999999999999999999999988764 466666664 3334567789999
Q ss_pred cCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 127 AYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
++|++++++ +|++..++.|..+.+++.+++++.+
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 999988887 9999999999999999999998876
No 73
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.60 E-value=1.2e-14 Score=105.57 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=72.8
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHH
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (408)
.+..||++||++|+.+.|.+++++++++..+.+..||++++++++++||+.++|++++ +|+ .++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999998789999999999999999999999999976 774 378899999999999
Q ss_pred HHhH
Q 015368 156 VREK 159 (408)
Q Consensus 156 i~~~ 159 (408)
+++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8765
No 74
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.57 E-value=2.9e-14 Score=116.50 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=71.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-------------HhHHHHcCC--CcCcEEEEEe-CCeEe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------------KDLAKEYNI--LAYPTLYLFV-AGVRQ 140 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i--~~~Pt~~~~~-~g~~~ 140 (408)
+|+||++||++|++++|.+++++++++ +.++.|+.++. ..+.+.|++ .++|++++++ +|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 788999999999999999999999984 78877776633 236678995 6999999998 89775
Q ss_pred -EEeeCCCCHHHHHHHHHhHhCC
Q 015368 141 -FQFFGERTRDVISAWVREKMTL 162 (408)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~~~ 162 (408)
..+.|..+.+++.+.+.+.+.-
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999999888744
No 75
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.57 E-value=1.4e-14 Score=110.71 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=67.9
Q ss_pred ChhhHHHHHcC--CCcEEEEEec-------CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-------cHhHHHHcCC
Q 015368 62 NGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------EKDLAKEYNI 125 (408)
Q Consensus 62 ~~~~~~~~~~~--~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------~~~~~~~~~i 125 (408)
+.++|.+.+.. +++++|.||| +||++|+.+.|.++++++++++++.|+.||+++ +.++.++++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 35667777754 7899999999 999999999999999999998789999999976 4589999999
Q ss_pred C-cCcEEEEEeCCe
Q 015368 126 L-AYPTLYLFVAGV 138 (408)
Q Consensus 126 ~-~~Pt~~~~~~g~ 138 (408)
. ++||+++|++|+
T Consensus 88 ~~~iPT~~~~~~~~ 101 (119)
T cd02952 88 TTGVPTLLRWKTPQ 101 (119)
T ss_pred ccCCCEEEEEcCCc
Confidence 9 999999998774
No 76
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.56 E-value=5.9e-15 Score=113.91 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=73.1
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-hHHHHcCCCc--CcEEEEEe-CCeE
Q 015368 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YPTLYLFV-AGVR 139 (408)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~i~~--~Pt~~~~~-~g~~ 139 (408)
+.+..+..++++++|.|||+||++|+.+.|.+.+..+.......|+.|+.+.+. ...+.|++.+ +||+++++ +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 344556678899999999999999999999999987765444556666766554 4567899987 99999998 9977
Q ss_pred eE---EeeCCCCHHHHHHHHHhHh
Q 015368 140 QF---QFFGERTRDVISAWVREKM 160 (408)
Q Consensus 140 ~~---~~~g~~~~~~l~~~i~~~~ 160 (408)
+. ...|..+.+.+...+....
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred chhhccCCCCccccccCCCHHHHH
Confidence 65 4456677766666665443
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.54 E-value=6.3e-14 Score=110.88 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=70.7
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe-----------------------CcccHhHH
Q 015368 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-----------------------AYLEKDLA 120 (408)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~-----------------------~~~~~~~~ 120 (408)
..+.....++++++|+||++||++|++++|.++++++.+ ++.++.|+ +|.+..++
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 334433345899999999999999999999999998886 36666665 34556788
Q ss_pred HHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHH
Q 015368 121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVI 152 (408)
Q Consensus 121 ~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (408)
+.|++.++|++++++ +|+++.++.|..+.+.|
T Consensus 94 ~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 94 IDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 899999999888887 99999999999887754
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=1.3e-11 Score=120.19 Aligned_cols=308 Identities=18% Similarity=0.238 Sum_probs=209.5
Q ss_pred CcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 57 DVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 57 ~~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
.+..++ .++++..+....+.+|.|+.. .. ......+.++++.+.+...+.... .+..+++.+++. .|++.+++
T Consensus 112 ~~~~i~~~~~~~~~~~~~~~~vi~~~~~-~~--~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 185 (462)
T TIGR01130 112 AVKEIETVADLEAFLADDDVVVIGFFKD-LD--SELNDTFLSVAEKLRDVYFFFAHS--SDVAAFAKLGAF-PDSVVLFK 185 (462)
T ss_pred CceeecCHHHHHHHHhcCCcEEEEEECC-CC--cHHHHHHHHHHHHhhhccceEEec--CCHHHHhhcCCC-CCcEEEec
Confidence 445554 677888887777888888765 22 366778888999887755533322 344677788765 35666665
Q ss_pred -C--CeEeEEeeCCC--CHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCC-----cCHHHHHHHh-c
Q 015368 136 -A--GVRQFQFFGER--TRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEG-----MESEELAAAS-K 204 (408)
Q Consensus 136 -~--g~~~~~~~g~~--~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~-----~~~~~~~~~a-~ 204 (408)
. +.....|.|.. +.+.|..||....-|.+..+ +.+.+.......+ .+++|+..... .....+..+| +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 263 (462)
T TIGR01130 186 PKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEF-TQETAAKYFESGP-LVVLYYNVDESLDPFEELRNRFLEAAKK 263 (462)
T ss_pred ccccccccccccCcccCCHHHHHHHHHHcCCCceEee-CCcchhhHhCCCC-ceeEEEEecCCchHHHHHHHHHHHHHHH
Confidence 2 22223567765 56899999999998888888 5566666776654 44444433222 2345666777 5
Q ss_pred cCC-ceeEEEecC---HhHHhhcCCCCCCCCCeEEEeecCCCcccccCC-cCCHHHHHHHHhcCC---------------
Q 015368 205 LHS-DVNFYQTTS---ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFVTHTK--------------- 264 (408)
Q Consensus 205 ~~~-~~~f~~~~~---~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~~~~--------------- 264 (408)
+.+ .+.|+.+.. ..+++.+++.. .+.|+++++...+.....+.+ .++.+.|.+|+++..
T Consensus 264 ~~~~~i~f~~~d~~~~~~~~~~~~~~~-~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~ 342 (462)
T TIGR01130 264 FRGKFVNFAVADEEDFGRELEYFGLKA-EKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPE 342 (462)
T ss_pred CCCCeEEEEEecHHHhHHHHHHcCCCc-cCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCc
Confidence 664 788877643 45778888874 248999999865423445555 688899999998632
Q ss_pred --CCceEeeccccccccccC-CccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368 265 --HPLVVTLTIHNAQFVFQD-PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339 (408)
Q Consensus 265 --~p~v~~lt~~~~~~~~~~-~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i 339 (408)
...+..++..++..+... +.+. +.++.+||. |+...+.+.++|+.+++..+.+.|+.+|++.++ +.. +++
T Consensus 343 ~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~i 417 (462)
T TIGR01130 343 DDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FEV 417 (462)
T ss_pred cCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CCc
Confidence 124567788888876543 4444 446667887 999999999999999971012999999998643 333 676
Q ss_pred CCCCCcEEEEEccCCc--cccCCCCCChHHHHHHHHHHhcCcc
Q 015368 340 SGNAPRVIAYSARDAK--KYVLNGELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 340 ~~~~~p~i~i~~~~~~--~y~~~~~~~~~~i~~Fi~~~~~gk~ 380 (408)
. ..|.++++..+.+ ...+.|..+.+.|.+|+++..+.++
T Consensus 418 ~--~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 418 E--GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred c--ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 3 4689998876332 2457888999999999999887655
No 79
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.52 E-value=6.1e-14 Score=111.42 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=59.9
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--------CcEEEEEeCccc-------------------------Hh
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLE-------------------------KD 118 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~-------------------------~~ 118 (408)
++|+++|+|||+||++|++++|.+.++++++++ ++.++.|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 689999999999999999999999999887643 588898887643 24
Q ss_pred HHHHcCCCcCcEEEEEe-CCeEeEE
Q 015368 119 LAKEYNILAYPTLYLFV-AGVRQFQ 142 (408)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~-~g~~~~~ 142 (408)
++++|++.++|++++++ +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 67889999999999999 8966543
No 80
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.50 E-value=7.9e-14 Score=106.28 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=92.4
Q ss_pred eEeeccccccccccCCccEEEEEeeCCCchHHHHHHHHHHHH---hcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKA---LKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~---~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
|+++|.+|+..++..+.|..++|...++.+.+...++++|++ ++++ +.|+++|++... ..++.||++.+..
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~---~~~~~fgl~~~~~ 74 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGA---INFLTADGDKFR---HPLLHLGKTPADL 74 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCce---EEEEEEechHhh---hHHHHcCCCHhHC
Confidence 578999999999999997766555555578899999999999 9999 999999988754 3679999998789
Q ss_pred cEEEEEcc-CCcccc-CCCCCChHHHHHHHHHHhcCc
Q 015368 345 RVIAYSAR-DAKKYV-LNGELTLSSIKSFGEEFLEDK 379 (408)
Q Consensus 345 p~i~i~~~-~~~~y~-~~~~~~~~~i~~Fi~~~~~gk 379 (408)
|++++.+. ...+|. +.+.++.++|.+|++++++|+
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 99999998 447998 888999999999999999996
No 81
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.50 E-value=7.3e-14 Score=107.92 Aligned_cols=86 Identities=24% Similarity=0.483 Sum_probs=67.6
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHH---HHHHhcCCcEEEEEeCccc--------------------HhHHHHcCCCc
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKGEADLVMVDAYLE--------------------KDLAKEYNILA 127 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~---~~~~~~~~v~~~~v~~~~~--------------------~~~~~~~~i~~ 127 (408)
.+++++++.||++||++|+.+.+.+.. +...+++++.++.++++.. .++++.+||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 367899999999999999999999985 4445555788888888753 35889999999
Q ss_pred CcEEEEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (408)
+||+++++ +|+.+.++.|..+.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999998 898899999999999998875
No 82
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.49 E-value=3.1e-13 Score=104.58 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHH--------HcCCCcCcE
Q 015368 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYPT 130 (408)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~Pt 130 (408)
+++.+..+..++|+++|.|+|+||++|+.+.+.. .++++.+..++.++.||.++.+++++ .|++.|+|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 3556777888999999999999999999998743 45777766689999999998887765 358999999
Q ss_pred EEEEe-CCeEeEEeeCC-----CCHHHHHHHHHh
Q 015368 131 LYLFV-AGVRQFQFFGE-----RTRDVISAWVRE 158 (408)
Q Consensus 131 ~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~ 158 (408)
+++++ +|+.+....+. .+...+..++.+
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99998 89777554432 344455555543
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.46 E-value=2.9e-13 Score=107.66 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=59.8
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCccc------------------------HhHHHHc
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE------------------------KDLAKEY 123 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~------------------------~~~~~~~ 123 (408)
.++++++|+||++||++|+.++|.+.++++++++ ++.++.|+.+.. ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 3679999999999999999999999999988864 577777776643 3577899
Q ss_pred CCCcCcEEEEEe-CCeEeE
Q 015368 124 NILAYPTLYLFV-AGVRQF 141 (408)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~ 141 (408)
++.++|++++++ +|+++.
T Consensus 96 ~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 96 KIEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999998 886543
No 84
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.8e-13 Score=126.00 Aligned_cols=182 Identities=26% Similarity=0.398 Sum_probs=130.8
Q ss_pred CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (408)
Q Consensus 57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (408)
.+..++..+|+..+ .....++|.||||||+||+.++|+|++++..++ ..+.++.+||+.+..+|+.++|+++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 48889999998766 566789999999999999999999999999986 489999999999999999999999999999
Q ss_pred EeCCeE-eEEeeCCCCHHHHHHHHHhHhCCC-----cccccChh----HH---HHH---hccCCeEEEEEecCCCCc---
Q 015368 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLG-----TYSITTTD----EA---ERI---LTVESKLVLGFLHDLEGM--- 194 (408)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~-----~~~i~~~~----~~---~~~---~~~~~~~vi~f~~~~~~~--- 194 (408)
|.+|.. ...|.|.++.+.+..|+....... +.++.+.+ .+ +.+ .......++.++.+|+..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGG 304 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccc
Confidence 998766 678889999999999999988663 33332221 00 111 112224566677777654
Q ss_pred CHHHHHHHhcc----CCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368 195 ESEELAAASKL----HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (408)
Q Consensus 195 ~~~~~~~~a~~----~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~ 241 (408)
..+.+...+.. ...+.+... ....++.....+ ++|++.+++...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 305 FAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVR---GYPTIKLYNYGK 355 (383)
T ss_pred cchhHHHHHhccccccccceeeccccccccchhhHhhhh---cCceeEeecccc
Confidence 44455555532 233333332 222355555555 578888776543
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.45 E-value=6.4e-13 Score=99.31 Aligned_cols=66 Identities=32% Similarity=0.549 Sum_probs=56.6
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCccc-------------------------HhHHHHcCC
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------------KDLAKEYNI 125 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~-------------------------~~~~~~~~i 125 (408)
||+++|+|||+||++|+++.|.+.++++.++ +++.++.|+++++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 5899999998754 246788999
Q ss_pred CcCcEEEEEe-CCe
Q 015368 126 LAYPTLYLFV-AGV 138 (408)
Q Consensus 126 ~~~Pt~~~~~-~g~ 138 (408)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999999 774
No 86
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.44 E-value=1.1e-12 Score=107.99 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=70.6
Q ss_pred hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEE------EEEeCcc-----------------------
Q 015368 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL------VMVDAYL----------------------- 115 (408)
Q Consensus 65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~------~~v~~~~----------------------- 115 (408)
.++.....||+.+|+|||+||++|+.++|.++++.+. ++.+ ..||.++
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 3333344699999999999999999999999999654 4566 6677654
Q ss_pred ------cHhHHHHcCCCcCcEE-EEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368 116 ------EKDLAKEYNILAYPTL-YLFV-AGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 116 ------~~~~~~~~~i~~~Pt~-~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (408)
+..+...|++.++|+. ++++ +|++..++.|..+.+++.+.+
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2335678999999888 7887 999999999999998887743
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.44 E-value=4.1e-13 Score=106.81 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=59.3
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccH-------------------------hHHHHc
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEK-------------------------DLAKEY 123 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~-------------------------~~~~~~ 123 (408)
++++++|+|||+||++|+.++|.++++++.+++ ++.++.|+++... .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 679999999999999999999999999998875 5778888776532 456779
Q ss_pred CCCcCcEEEEEe-CCeEeE
Q 015368 124 NILAYPTLYLFV-AGVRQF 141 (408)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~ 141 (408)
+|.++|++++++ +|+++.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999998 886543
No 88
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.44 E-value=8.4e-13 Score=93.54 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=61.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCC-CCHHHHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (408)
-|.||++||++|+.+.|.+++++++++..+.+..|| +.+.+.+|++.++|++++ ||+.+ +.|. .+.+.+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998788888887 345588999999999998 88665 7775 455777776
Q ss_pred H
Q 015368 156 V 156 (408)
Q Consensus 156 i 156 (408)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 89
>PHA02125 thioredoxin-like protein
Probab=99.44 E-value=1.3e-12 Score=92.50 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=58.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCC-CCHHHHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (408)
+++|||+||++|+.+.|.++++. +.++.||++++.+++++|+|.++||++ +|+.+.++.|. .+..+|.+-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997653 568999999999999999999999987 68777888885 344555543
No 90
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.43 E-value=1.6e-12 Score=115.31 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------cHhHHHHcCCCcCcEEEEEeC-CeE
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFVA-GVR 139 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~~ 139 (408)
.+++++|+|||+||++|+.++|.+++++++++ +.+..|++|. +..++++|||.++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 47899999999999999999999999999985 6777777664 357899999999999999994 544
Q ss_pred e-EEeeCCCCHHHHHHHHHhHhC
Q 015368 140 Q-FQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 140 ~-~~~~g~~~~~~l~~~i~~~~~ 161 (408)
+ ....|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 456699999999999876653
No 91
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.43 E-value=1.3e-12 Score=112.47 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=80.5
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHH-HHc
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA-KEY 123 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~-~~~ 123 (408)
.+.+++++.+...-.++++++|+|||+||++|+.++|.+.++++++++ ++.++.|+|+. . .+++ +++
T Consensus 83 ~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~ 162 (236)
T PLN02399 83 TVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF 162 (236)
T ss_pred EEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 344556665543333679999999999999999999999999999987 79999999841 1 1222 222
Q ss_pred C----------------------------------CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 124 N----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 124 ~----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+ +.+.|+.++++ +|+++.+|.|..+.++|.+.|++.+
T Consensus 163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1 22358999998 9999999999999999999998776
No 92
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.43 E-value=1.5e-12 Score=112.51 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=78.2
Q ss_pred EcChhhHHHHHcCCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368 60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
.++.+..+.+....++ .++.||++||++|+.+.|.+++++... +++.+..+|.+++++++++|+|.++||++++++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 3444444444433445 455599999999999999999999885 47999999999999999999999999999998884
Q ss_pred EeEEeeCCCCHHHHHHHHHh
Q 015368 139 RQFQFFGERTRDVISAWVRE 158 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~ 158 (408)
. +.|..+.+++.+|+.+
T Consensus 198 ~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E---FVGAYPEEQFLEYILS 214 (215)
T ss_pred E---EECCCCHHHHHHHHHh
Confidence 2 8899999999999875
No 93
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.42 E-value=1.1e-12 Score=128.67 Aligned_cols=97 Identities=25% Similarity=0.432 Sum_probs=81.8
Q ss_pred ChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcE
Q 015368 62 NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPT 130 (408)
Q Consensus 62 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt 130 (408)
+.+++++.+ .++|+++|+|||+||++|+.+.+.. .++.+.++ ++.++++|++++ .+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 456666554 4579999999999999999998875 67777776 689999999853 68899999999999
Q ss_pred EEEEe-CCeE--eEEeeCCCCHHHHHHHHHhH
Q 015368 131 LYLFV-AGVR--QFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 131 ~~~~~-~g~~--~~~~~g~~~~~~l~~~i~~~ 159 (408)
+++|+ +|++ ..++.|..+.+++.+++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99998 8876 46889999999999999864
No 94
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.41 E-value=1.5e-12 Score=110.48 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=78.6
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHHcCC
Q 015368 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEYNI 125 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~~~i 125 (408)
+..++++.+...-.++++++|+|||+||++|++++|.+.++++++++ ++.++.|+|++ + ...++++++
T Consensus 24 l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 24 VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 34455554443333689999999999999999999999999999987 79999998842 1 233444443
Q ss_pred C------------------------------------cCc---EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 126 L------------------------------------AYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 126 ~------------------------------------~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
. ++| +.++++ +|+++.++.|..+.+.+.+.|.+.+.
T Consensus 104 ~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 104 KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1 122 677887 99999999999999999999988774
No 95
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.39 E-value=2.5e-12 Score=134.57 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=79.0
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeC---------------------------cccHhHHHHc
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA---------------------------YLEKDLAKEY 123 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~---------------------------~~~~~~~~~~ 123 (408)
++|+++|+|||+||++|+.++|.+++++++|++ ++.++.|.+ |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 689999999999999999999999999999987 588887742 2244677899
Q ss_pred CCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+|.++|++++++ +|+++.++.|....+.+.+++...+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 999999999996 9999999999999999999998886
No 96
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.39 E-value=2.7e-12 Score=100.90 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=72.3
Q ss_pred EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe---------------------CcccH
Q 015368 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------AYLEK 117 (408)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~---------------------~~~~~ 117 (408)
..++++.+......+++++|+||++||++|+.+.|.+.++++.+. +..+.++ ++.+.
T Consensus 6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (123)
T cd03011 6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG 83 (123)
T ss_pred ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence 345555565555567999999999999999999999999988742 2222221 23456
Q ss_pred hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (408)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (408)
.++++|+|.++|+++++++|.+..++.|..+.+.|.+
T Consensus 84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 7999999999999999984438888999999998865
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.39 E-value=1.8e-12 Score=100.47 Aligned_cols=85 Identities=33% Similarity=0.469 Sum_probs=71.7
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-----------------------
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------- 116 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------- 116 (408)
++++.+...-..+++++|.||++||++|+...+.+.++.++++. ++.++.|+++.+
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 33344443333478999999999999999999999999999974 899999999886
Q ss_pred HhHHHHcCCCcCcEEEEEe-CCeEeEEeeC
Q 015368 117 KDLAKEYNILAYPTLYLFV-AGVRQFQFFG 145 (408)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g 145 (408)
..+++.|++.++|++++++ +|+++.++.|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 7789999999999999998 8988888776
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.37 E-value=2.9e-12 Score=104.04 Aligned_cols=88 Identities=28% Similarity=0.395 Sum_probs=72.9
Q ss_pred cChhhHHHHHcCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------H
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------K 117 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------~ 117 (408)
.+++.+...-.++|+++|.||++ ||++|+.++|.+.++++.+++ ++.++.|..+.+ .
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~ 95 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG 95 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH
Confidence 55555543335789999999999 999999999999999999876 688888876543 4
Q ss_pred hHHHHcCCC---------cCcEEEEEe-CCeEeEEeeCCCC
Q 015368 118 DLAKEYNIL---------AYPTLYLFV-AGVRQFQFFGERT 148 (408)
Q Consensus 118 ~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~~g~~~ 148 (408)
.+.+.|++. ++|++++++ +|+++..+.|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 578889988 999999998 9999999988766
No 99
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.37 E-value=3.9e-12 Score=107.44 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=70.0
Q ss_pred cEEcChhhHHH--HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--------------------c
Q 015368 58 VVSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--------------------L 115 (408)
Q Consensus 58 ~~~l~~~~~~~--~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--------------------~ 115 (408)
+.+++++++.. ...++++++|+||++||++|+.++|.+.++++..+ +.++.|+.+ .
T Consensus 57 l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~ 134 (189)
T TIGR02661 57 LPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVV 134 (189)
T ss_pred ecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeec
Confidence 44455554442 33467899999999999999999999999987754 444444422 1
Q ss_pred cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCC-CCHHHHHHHHHhH
Q 015368 116 EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGE-RTRDVISAWVREK 159 (408)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~ 159 (408)
..++++.|++.++|+.++++ +|++..+ |. ...+.+.+.++..
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 34677899999999999998 8866543 44 4567777777543
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.37 E-value=3.3e-12 Score=100.76 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc---------------------------ccHhHHHHc
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------------LEKDLAKEY 123 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~---------------------------~~~~~~~~~ 123 (408)
++++++|+||++||++|+.++|.++++++++++ ++.++.|+.+ .+..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 679999999999999999999999999999986 7888888652 123467789
Q ss_pred CCCcCcEEEEEe-CCeEeEEeeCC
Q 015368 124 NILAYPTLYLFV-AGVRQFQFFGE 146 (408)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~~~g~ 146 (408)
++.++|++++++ +|+++.++.|+
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999998 89888888885
No 101
>PLN02412 probable glutathione peroxidase
Probab=99.34 E-value=9.4e-12 Score=102.85 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=78.7
Q ss_pred EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------cHhH----HHHcC-
Q 015368 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKDL----AKEYN- 124 (408)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------~~~~----~~~~~- 124 (408)
..++++.+...-..+++++|+|||+||++|+.++|.+.++++++++ ++.++.|+++. ..++ +++++
T Consensus 15 ~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (167)
T PLN02412 15 KDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKA 94 (167)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCC
Confidence 3444544432223679999999999999999999999999999987 79999998742 1121 12211
Q ss_pred ---------------------------------CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 125 ---------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 125 ---------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
+.+.|+.++++ +|+++.++.|..+.+++.+.|++.+.
T Consensus 95 ~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 95 EFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 34468999997 99999999999999999999987763
No 102
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.33 E-value=4.6e-12 Score=98.17 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=54.4
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc---c-----------------cHhHHHHcCCCcCcEE
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---L-----------------EKDLAKEYNILAYPTL 131 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~---~-----------------~~~~~~~~~i~~~Pt~ 131 (408)
++++++|.||++||++|++++|.++++++.+++++.++.+.-+ + +.++.++|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 4789999999999999999999999999988777777766311 1 1345667888888999
Q ss_pred EEEe-CCeEe
Q 015368 132 YLFV-AGVRQ 140 (408)
Q Consensus 132 ~~~~-~g~~~ 140 (408)
++++ +|++.
T Consensus 100 ~vid~~G~v~ 109 (114)
T cd02967 100 VLLDEAGVIA 109 (114)
T ss_pred EEECCCCeEE
Confidence 9998 77543
No 103
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.32 E-value=1.9e-11 Score=95.86 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=87.1
Q ss_pred CceEeeccccc-cccccCCccEEEEEeeCC------CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhcc
Q 015368 266 PLVVTLTIHNA-QFVFQDPRKQLWLFAPAY------GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFG 338 (408)
Q Consensus 266 p~v~~lt~~~~-~~~~~~~~~~~i~f~~~~------~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~ 338 (408)
|-+.+++.++. ...+....-.++.|.+.. +.+++...++++|++|+++| +.|+|+|++.+. .+++.||
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~~---~~~~~fg 76 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQL---DLEEALN 76 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCcccH---HHHHHcC
Confidence 44667776654 445544445566666641 25688999999999999986 899999988753 5889999
Q ss_pred CCCCCCcEEEEEccCCcccc-CCCCCChHHHHHHHHHHhcCcc
Q 015368 339 VSGNAPRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 339 i~~~~~p~i~i~~~~~~~y~-~~~~~~~~~i~~Fi~~~~~gk~ 380 (408)
++....|++++++.++.+|. +.++++.+.|.+|++++++|++
T Consensus 77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 98777899999998444888 8899999999999999999999
No 104
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.31 E-value=1.7e-11 Score=100.17 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=74.9
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc--------cc---HhHHHH-cCC--
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY--------LE---KDLAKE-YNI-- 125 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~--------~~---~~~~~~-~~i-- 125 (408)
++++.+...-.++|+++|.|||+||++|+.++|.+.++++++++ ++.++.|+|. .. .+.+++ +++
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~f 89 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTF 89 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCC
Confidence 44444443233688999999999999999999999999999987 8999999972 11 222322 221
Q ss_pred ------------------------CcCcE----EEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 126 ------------------------LAYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 126 ------------------------~~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
.++|+ .++++ +|+++.++.|..+.++|.+.|++.
T Consensus 90 p~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 90 PMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13686 78887 999999999999999998888764
No 105
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.30 E-value=6.9e-11 Score=91.24 Aligned_cols=106 Identities=7% Similarity=0.143 Sum_probs=89.6
Q ss_pred EEcChhhHHHHHcCCCcEEEEEecC--CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 59 VSLNGKNFSEFMGKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~f~a~--wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
..++..+++..+..+...+|.|-.+ -++.+....=.+.+++++|.+ ++.+++||++++++++.+|||.++||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 3466678888887766666655432 356677777789999999985 6999999999999999999999999999999
Q ss_pred CCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368 136 AGVRQFQFFGERTRDVISAWVREKMTLGT 164 (408)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (408)
+|+.+.+..|.++.+++.+||.+.+..+.
T Consensus 100 dGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 100 GGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999987654
No 106
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.29 E-value=1.1e-11 Score=101.09 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHH-cC--------------
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-YN-------------- 124 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~-~~-------------- 124 (408)
.+|+++|+|||+||+ |+.++|.++++++++++ ++.++.|+++. . .+++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 589999999999999 99999999999999976 79999998742 1 123332 22
Q ss_pred ---------CCcCc-----------EEEEEe-CCeEeEEeeCCCCHHHHHHH
Q 015368 125 ---------ILAYP-----------TLYLFV-AGVRQFQFFGERTRDVISAW 155 (408)
Q Consensus 125 ---------i~~~P-----------t~~~~~-~g~~~~~~~g~~~~~~l~~~ 155 (408)
+.++| +.++++ +|+++.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 688887 99999999999998887653
No 107
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.28 E-value=6.1e-10 Score=94.16 Aligned_cols=167 Identities=20% Similarity=0.314 Sum_probs=128.1
Q ss_pred hhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC-eEeEEeeCC-CCHHHHHHHHHhHhCCCcccc
Q 015368 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGE-RTRDVISAWVREKMTLGTYSI 167 (408)
Q Consensus 90 ~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i 167 (408)
.+...|.++|+.+.+.+.|+.+. ++++++++++.. |++++|+++ +....|.|. .+.+.|.+||....-|.+.++
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 45678999999999899999988 778999999998 999999963 467889998 899999999999999999998
Q ss_pred cChhHHHHHhccCCe-EEEEEecCCCCc---CHHHHHHHh-ccCCceeEEEec---CHhHHhhcCCCCCCCCCeEEEeec
Q 015368 168 TTTDEAERILTVESK-LVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQTT---SADVAEFFHIHPKSKRPALIFLHL 239 (408)
Q Consensus 168 ~~~~~~~~~~~~~~~-~vi~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~~---~~~l~~~~~i~~~~~~p~l~~~~~ 239 (408)
+ .+.+..+...... ++++|....... ....+..+| +.++++.|..+. .+.+.+.++++. ...|+++++..
T Consensus 83 t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi~~~ 160 (184)
T PF13848_consen 83 T-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVIFDS 160 (184)
T ss_dssp S-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEEEET
T ss_pred c-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEEEEC
Confidence 5 5788888887765 454444332211 334455666 778888888762 457888999984 35899999996
Q ss_pred CCCcc-cccCCcCCHHHHHHHHhc
Q 015368 240 EAGKA-TPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 240 ~~~~~-~~y~g~~~~~~i~~fi~~ 262 (408)
..+.. ..+.++++.++|.+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 161 NKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCcEEcCCCCCCCHHHHHHHhcC
Confidence 55443 334788999999999963
No 108
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.25 E-value=1.2e-10 Score=89.95 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=79.1
Q ss_pred HHHHcCCCcEEEEEecCCChhHHhhhHH-H--HHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEEe--CCeE
Q 015368 67 SEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVR 139 (408)
Q Consensus 67 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~ 139 (408)
+.+..++|+++|+|+++||++|+.+... | .++.+.++.++.+..+|.+ +..++++.|++.++|++++++ +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3455678999999999999999999764 3 5566667667888888886 456789999999999999998 5888
Q ss_pred eEEeeCCCCHHHHHHHHHhHh
Q 015368 140 QFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+.+..|..+.+++...+++..
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999998887754
No 109
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.25 E-value=2.4e-11 Score=92.34 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=81.4
Q ss_pred eEeeccccccccccCCccEEEEEeeC------CCchHHHHHHHHHHHHhc-CCcceEEEEEEEcCCcccccchhhhccCC
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWLFAPA------YGSDKVILTFEEVAKALK-GKVNMLLHVYVEMNSEGVGRRVSQEFGVS 340 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~f~~~------~~~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~~~~~~l~~~~~i~ 340 (408)
|.++|.+|...++.. |++++|.+. ++.+++...++++|++++ ++ +.|+++|.++.. ..++.||++
T Consensus 1 v~~~~~en~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~~---~~l~~fgl~ 72 (111)
T cd03073 1 VGHRTKDNRAQFTKK--PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK---LNFAVADKEDFS---HELEEFGLD 72 (111)
T ss_pred CCeeccchHHHhccC--CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe---EEEEEEcHHHHH---HHHHHcCCC
Confidence 356788888888655 445555422 226789999999999999 79 999999987643 467999998
Q ss_pred CCC--CcEEEEEccCCccccCCCCC-ChHHHHHHHHHHh
Q 015368 341 GNA--PRVIAYSARDAKKYVLNGEL-TLSSIKSFGEEFL 376 (408)
Q Consensus 341 ~~~--~p~i~i~~~~~~~y~~~~~~-~~~~i~~Fi~~~~ 376 (408)
.+. .|++++.+..++||.+++++ +.++|.+|+++++
T Consensus 73 ~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 73 FSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred cccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 766 89999998756899998889 9999999999874
No 110
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.21 E-value=4.2e-11 Score=82.94 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
-++.||++||++|+.+.+.++++++.. .++.+..+|.++++++++++|+.++|++++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 467899999999999999999998764 379999999999999999999999999865 553
No 111
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.17 E-value=8.6e-11 Score=90.71 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=56.3
Q ss_pred HHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe-CCeEeE
Q 015368 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQF 141 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 141 (408)
+..+..++|+++|+|+++||++|+.+...+ .++.+..+.++..+.++.+....-....+ .++||++|++ +|+++.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 334457899999999999999999998875 34555554466666666542211111234 6899999998 887777
Q ss_pred EeeCCC
Q 015368 142 QFFGER 147 (408)
Q Consensus 142 ~~~g~~ 147 (408)
+..|.+
T Consensus 95 ~i~Gy~ 100 (130)
T cd02960 95 DITGRY 100 (130)
T ss_pred cccccc
Confidence 776643
No 112
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.17 E-value=2.7e-10 Score=82.99 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (408)
.+..-+..|+++||++|....+.++++++.+. ++.+..+|.++.++++++|||.++|++++ +|+... .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 44567888999999999999999999998875 79999999999999999999999999965 786544 58666665
Q ss_pred HH
Q 015368 152 IS 153 (408)
Q Consensus 152 l~ 153 (408)
+.
T Consensus 86 ~~ 87 (89)
T cd03026 86 IL 87 (89)
T ss_pred Hh
Confidence 43
No 113
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.17 E-value=1.6e-10 Score=97.09 Aligned_cols=103 Identities=12% Similarity=0.114 Sum_probs=74.5
Q ss_pred cEEcChhhHHHHHcCCCcE-EEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c-Hh---H-HHH-
Q 015368 58 VVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KD---L-AKE- 122 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~-~~---~-~~~- 122 (408)
+..++++.+...-..+|++ ++.+||+||++|++++|.++++++++++ ++.++.|+|+. + .+ . .++
T Consensus 25 l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~ 104 (183)
T PTZ00256 25 AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKF 104 (183)
T ss_pred eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 3345555444322357765 4566999999999999999999999987 79999998742 0 11 1 112
Q ss_pred -----------------------------------cCCCcCcE---EEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 123 -----------------------------------YNILAYPT---LYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 123 -----------------------------------~~i~~~Pt---~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+++.++|+ .++++ +|+++.++.|..+.+.+.+.|.+.+
T Consensus 105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 13446794 57777 9999999999999999988888765
No 114
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.15 E-value=5.3e-10 Score=93.19 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-----------------------------cHhHHH
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------------EKDLAK 121 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-----------------------------~~~~~~ 121 (408)
++++++|+||++||+.|...++.+.++++++++ ++.++.|+++. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 678999999999999999999999999999975 89999998753 124567
Q ss_pred HcCCCcCcEEEEEe-CCeEeEEe---------eCCCCHHHHHHHHHhHhCCCc
Q 015368 122 EYNILAYPTLYLFV-AGVRQFQF---------FGERTRDVISAWVREKMTLGT 164 (408)
Q Consensus 122 ~~~i~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~l~~~i~~~~~~~~ 164 (408)
.|++.+.|++++++ +|+++... .+..+.+.+.+-|...+...-
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 89999999999998 88766442 123466888888888775443
No 115
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.14 E-value=2.6e-10 Score=107.75 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=82.2
Q ss_pred EEcChh-hHHHHHcCCC--cEEEEEecCCChhHHhhhHHHH-HHHHHhcC-CcEEEEEeCccc----HhHHHHcCCCcCc
Q 015368 59 VSLNGK-NFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFA-AAAKMLKG-EADLVMVDAYLE----KDLAKEYNILAYP 129 (408)
Q Consensus 59 ~~l~~~-~~~~~~~~~~--~~~v~f~a~wC~~C~~~~p~~~-~~~~~~~~-~v~~~~v~~~~~----~~~~~~~~i~~~P 129 (408)
..++.. ++++.+.+++ ||+|+|||+||-.||.+.+..- +.....+- ++...++|.+++ .++-++||+-|.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 344444 7888886666 9999999999999999988753 22222222 899999999865 4677899999999
Q ss_pred EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 130 TLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 130 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
++++|+ +|++.....|.++++.+.+++++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999 8877777999999999999998753
No 116
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.10 E-value=1e-09 Score=82.16 Aligned_cols=95 Identities=20% Similarity=0.403 Sum_probs=84.5
Q ss_pred ccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (408)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~ 243 (408)
..+.+.++++.++..++.++|+||.+.+++.+..|..+| .++..+.|+.+.+..+.+++++. .|++++|++.+..
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccC
Confidence 467888999999999999999999998889999999988 67779999999999999998876 4899999987778
Q ss_pred ccccCCcCCHHHHHHHHhcC
Q 015368 244 ATPFRHQFTRLAIANFVTHT 263 (408)
Q Consensus 244 ~~~y~g~~~~~~i~~fi~~~ 263 (408)
+..|+|+++.++|.+||..+
T Consensus 78 ~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CccCCCCCCHHHHHHHHHhC
Confidence 88999999999999999754
No 117
>smart00594 UAS UAS domain.
Probab=99.08 E-value=2.1e-09 Score=83.88 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=72.3
Q ss_pred HHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEEe-CC----
Q 015368 68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AG---- 137 (408)
Q Consensus 68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~-~g---- 137 (408)
.+..++|+++|+|+++||++|+.+.... .++.+.++.++.+..+|.+. ..+++++|++.++|+++++. +|
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 4446789999999999999999987764 55666666678887888654 46789999999999999998 55
Q ss_pred -eEeEEeeCCCCHHHHHHHH
Q 015368 138 -VRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (408)
+.+.+..|..+.+++..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 3467889999999998775
No 118
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.1e-09 Score=80.90 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=84.9
Q ss_pred HHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc----------------cHhHHHHcCCCcC
Q 015368 68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----------------EKDLAKEYNILAY 128 (408)
Q Consensus 68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----------------~~~~~~~~~i~~~ 128 (408)
.+..+++..++.|-++.|+.|.++...+ .++.+.+.+++.++.++... .++++++|+++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3445789999999999999999998876 56677777788888888642 3589999999999
Q ss_pred cEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHh
Q 015368 129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL 177 (408)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~ 177 (408)
|++++|+ +|+.+...+|.+..+++...++-..........+.+++...+
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk~ 166 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKKL 166 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 9999999 888899999999999998777544433333333344444444
No 119
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.9e-10 Score=90.91 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCcEEc-ChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCC-----
Q 015368 56 KDVVSL-NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL----- 126 (408)
Q Consensus 56 ~~~~~l-~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~----- 126 (408)
..+..+ +++.++..+.+ .+.|+|.|+|.|.+.|+.+.|.|.+++.+|.. .+.|++||+...++.+.+|+|+
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence 456666 56666666644 45899999999999999999999999999987 8999999999999999999886
Q ss_pred -cCcEEEEEeCCeEeEEeeC
Q 015368 127 -AYPTLYLFVAGVRQFQFFG 145 (408)
Q Consensus 127 -~~Pt~~~~~~g~~~~~~~g 145 (408)
..||+++|.+|+++.+...
T Consensus 204 rQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 204 RQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred ccCCeEEEEccchhhhcCcc
Confidence 5899999999988877653
No 120
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.07 E-value=1.1e-09 Score=88.16 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------cHhHHHHcCCCcC
Q 015368 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNILAY 128 (408)
Q Consensus 72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~~~ 128 (408)
.+++++|.|| +.||+.|...+|.+.++++.+++ ++.++.|..+. +..+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4899999999 58999999999999999998875 78888887643 3457788999888
Q ss_pred ---------cEEEEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368 129 ---------PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 129 ---------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (408)
|++++++ +|++...+.|....+.+.+-+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 9999998 899999999988777766543
No 121
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.07 E-value=7.4e-10 Score=83.99 Aligned_cols=94 Identities=36% Similarity=0.435 Sum_probs=75.4
Q ss_pred cccccCCccEEEEEeeC-C-CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-C
Q 015368 277 QFVFQDPRKQLWLFAPA-Y-GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-D 353 (408)
Q Consensus 277 ~~~~~~~~~~~i~f~~~-~-~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~ 353 (408)
..+...+.|++++|... + +++.+.+.++++|++++++ +.|+++|++.. +.+++.+|+.....|.+++++. +
T Consensus 6 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~---~~~~~~~~i~~~~~P~~~~~~~~~ 79 (103)
T cd02982 6 FNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF---GRHLEYFGLKEEDLPVIAIINLSD 79 (103)
T ss_pred hhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh---HHHHHHcCCChhhCCEEEEEeccc
Confidence 33333355788877754 4 3899999999999999999 99999998763 4788999997556899999887 5
Q ss_pred CccccCCC-CCChHHHHHHHHHHh
Q 015368 354 AKKYVLNG-ELTLSSIKSFGEEFL 376 (408)
Q Consensus 354 ~~~y~~~~-~~~~~~i~~Fi~~~~ 376 (408)
+++|.+.+ .++.++|.+|+++++
T Consensus 80 ~~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 80 GKKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred ccccCCCccccCHHHHHHHHHhhC
Confidence 77888765 569999999999874
No 122
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.06 E-value=5.7e-10 Score=80.50 Aligned_cols=69 Identities=30% Similarity=0.391 Sum_probs=54.7
Q ss_pred HHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
+..+..++|+++|+|+|+||++|+.+...+ .++.+.+.+++.++.||.++.....+..+ .++|++++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 445557899999999999999999999887 45566566689999999987665443222 7799999986
No 123
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.05 E-value=2.5e-09 Score=80.59 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=85.5
Q ss_pred cccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~ 241 (408)
++.|.+.++++.++. .++..+|+||.+..++.+..|..+| .++.++.|+.+.+..+...+++. .|+++++++.+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCC
Confidence 567889999999999 8999999999998888999999988 67799999999999999999886 59999998766
Q ss_pred Cccccc-CCcCCHHHHHHHHhcCC
Q 015368 242 GKATPF-RHQFTRLAIANFVTHTK 264 (408)
Q Consensus 242 ~~~~~y-~g~~~~~~i~~fi~~~~ 264 (408)
.....| .|..+.+.|.+||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 677789 78889999999998764
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.04 E-value=2.4e-09 Score=88.53 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=66.4
Q ss_pred CCCcEEEEEecCC-ChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------------------cHhHHHHcCCCc
Q 015368 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------------------EKDLAKEYNILA 127 (408)
Q Consensus 72 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------------------~~~~~~~~~i~~ 127 (408)
.+|+++|+||++| |++|..++|.+.++++++. ++.++.|++|. ...+++.||+.+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 5789999999999 9999999999999999985 78888887653 236788899987
Q ss_pred Cc---------EEEEEe-CCeEeEEeeCC-----CCHHHHHHHH
Q 015368 128 YP---------TLYLFV-AGVRQFQFFGE-----RTRDVISAWV 156 (408)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g~-----~~~~~l~~~i 156 (408)
.| ++++++ +|++...+.+. .+.+.+.+.+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 77 889998 99877776432 3455555554
No 125
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.02 E-value=3.1e-09 Score=80.34 Aligned_cols=95 Identities=18% Similarity=0.313 Sum_probs=82.6
Q ss_pred cccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEee----
Q 015368 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH---- 238 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~---- 238 (408)
+..+.+.++++.++..++..+|+||.+..++.+..|..+| .++.++.|+++.+..+.+.+++ . |++++|+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4678899999999999999999999988888999999988 6779999999999999999987 3 8899994
Q ss_pred --cCCCcccccCCcCCHHHHHHHHhcC
Q 015368 239 --LEAGKATPFRHQFTRLAIANFVTHT 263 (408)
Q Consensus 239 --~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (408)
+.+.....|+|+++.++|.+||..+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 3445677899999999999999875
No 126
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.01 E-value=9.7e-10 Score=86.41 Aligned_cols=70 Identities=24% Similarity=0.533 Sum_probs=60.9
Q ss_pred CCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------cHhHHHHcCCC--
Q 015368 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL-- 126 (408)
Q Consensus 72 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~-- 126 (408)
.+++++|.||++ ||++|+...+.+.++.++++. ++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 999999999999999999987 79999998754 34578889998
Q ss_pred ----cCcEEEEEe-CCeEeE
Q 015368 127 ----AYPTLYLFV-AGVRQF 141 (408)
Q Consensus 127 ----~~Pt~~~~~-~g~~~~ 141 (408)
.+|++++++ +|++..
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 999999999 775543
No 127
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.01 E-value=1.1e-10 Score=96.57 Aligned_cols=101 Identities=20% Similarity=0.381 Sum_probs=92.3
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
.+..++.+|+...+.. -+++.|+||||+.|+...|.|..++.--.+ +|.++.||+..++-+.-+|=+...||++..+
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 7788999999988743 499999999999999999999999887666 9999999999999999999999999999999
Q ss_pred CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 136 AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+| +-.+|.|.++..++..|+...-
T Consensus 103 DG-eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 103 DG-EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred cc-ccccccCcccchhHHHHHHhhh
Confidence 99 8899999999999999987654
No 128
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.98 E-value=5.4e-09 Score=87.21 Aligned_cols=88 Identities=17% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK 121 (408)
Q Consensus 72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~ 121 (408)
.+++++|.|| ++||++|....|.+.++++++.+ ++.++.|.++.. ..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999999976 788888876532 23456
Q ss_pred HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhH
Q 015368 122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREK 159 (408)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~ 159 (408)
.|++. ..|++++++ +|++...+.+. .+.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77876 578999998 99888888543 4667787777654
No 129
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.96 E-value=5.1e-09 Score=84.55 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCCcEEEEEecCC-ChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-----------------------HhHHHHcCCCc
Q 015368 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------------------KDLAKEYNILA 127 (408)
Q Consensus 72 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----------------------~~~~~~~~i~~ 127 (408)
.+|+++|+||++| |++|+.++|.+.+++++++ ++.++.|+.+.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5789999999999 6999999999999999986 788888887521 45667888763
Q ss_pred ------CcEEEEEe-CCeEeEEeeCC
Q 015368 128 ------YPTLYLFV-AGVRQFQFFGE 146 (408)
Q Consensus 128 ------~Pt~~~~~-~g~~~~~~~g~ 146 (408)
.|+.++++ +|++...+.|.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECC
Confidence 68999998 99888877754
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.95 E-value=6.8e-09 Score=87.51 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (408)
Q Consensus 72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 124 (408)
.+++++|.|| ++||++|..++|.+.++++++++ ++.++.|+++. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999999875 78888887653 235678888
Q ss_pred CC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHH
Q 015368 125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR 157 (408)
Q Consensus 125 i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~ 157 (408)
+. ..|++++++ +|++...+.+ .++.+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 86 469999998 8987766543 246777776664
No 131
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.95 E-value=9.5e-09 Score=84.08 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=70.6
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------------------
Q 015368 58 VVSLNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------- 115 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------- 115 (408)
+..++++.+...-.++++++|.||++ ||+.|....+.+.++++.+++ ++.++.|+.+.
T Consensus 15 l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D 94 (154)
T PRK09437 15 LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSD 94 (154)
T ss_pred eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence 33445544442223678999999986 688899999999999999876 78888888753
Q ss_pred -cHhHHHHcCCCcC------------cEEEEEe-CCeEeEEeeCCCCHHHH
Q 015368 116 -EKDLAKEYNILAY------------PTLYLFV-AGVRQFQFFGERTRDVI 152 (408)
Q Consensus 116 -~~~~~~~~~i~~~------------Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (408)
...++++||+.+. |+.++++ +|+++..|.|....+.+
T Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~ 145 (154)
T PRK09437 95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHH 145 (154)
T ss_pred CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhH
Confidence 2356778887654 6778887 99999999986555543
No 132
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.89 E-value=4.4e-09 Score=82.72 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=59.7
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCC---cEEEEEeCccc-------------------------HhHHHH
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLE-------------------------KDLAKE 122 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---v~~~~v~~~~~-------------------------~~~~~~ 122 (408)
..||.+.++|-|.||++|+.+-|.+.++++..+++ +.++-|+.|.+ .+++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 36799999999999999999999999999998874 77777776543 357889
Q ss_pred cCCCcCcEEEEEe-CCeEe
Q 015368 123 YNILAYPTLYLFV-AGVRQ 140 (408)
Q Consensus 123 ~~i~~~Pt~~~~~-~g~~~ 140 (408)
|+|.++|++.+++ +|..+
T Consensus 111 y~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVV 129 (157)
T ss_pred cccCcCceeEEecCCCCEe
Confidence 9999999999998 88554
No 133
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.88 E-value=1.5e-08 Score=82.46 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=55.5
Q ss_pred CCCcE-EEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------HhHHHHcCCC--
Q 015368 72 KNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------KDLAKEYNIL-- 126 (408)
Q Consensus 72 ~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------~~~~~~~~i~-- 126 (408)
.++++ ++.||++||++|+.++|.+.++++++++ ++.++.|+.+.. ..+.+.||+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~ 101 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRS 101 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceec
Confidence 33454 5555699999999999999999999975 799999887543 3456777773
Q ss_pred ---------------------------cCcEEEEEe-CCeEeEEeeC
Q 015368 127 ---------------------------AYPTLYLFV-AGVRQFQFFG 145 (408)
Q Consensus 127 ---------------------------~~Pt~~~~~-~g~~~~~~~g 145 (408)
..|++++++ +|++...+.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 678888887 6766666554
No 134
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.88 E-value=2e-08 Score=81.72 Aligned_cols=74 Identities=11% Similarity=0.314 Sum_probs=60.1
Q ss_pred CcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------c--HhHHHHcCCCc-
Q 015368 74 RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------E--KDLAKEYNILA- 127 (408)
Q Consensus 74 ~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~--~~~~~~~~i~~- 127 (408)
++++|.|| ++||+.|....|.+.++++++++ ++.++.|+.+. . ..+++.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 88888888 99999999999999999999975 78888887642 3 55778888873
Q ss_pred ---C--cEEEEEe-CCeEeEEeeCCC
Q 015368 128 ---Y--PTLYLFV-AGVRQFQFFGER 147 (408)
Q Consensus 128 ---~--Pt~~~~~-~g~~~~~~~g~~ 147 (408)
. |++++++ +|++...+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 3 3888887 898888888754
No 135
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.87 E-value=2.8e-08 Score=83.14 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (408)
Q Consensus 72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 124 (408)
.+|++++.|| ++||+.|..+++.+.+.++++++ ++.++.|++|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 99999999999999999999965 78888877653 346788899
Q ss_pred C----CcC--cEEEEEe-CCeEeEEee----CCCCHHHHHHHHHhH
Q 015368 125 I----LAY--PTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (408)
Q Consensus 125 i----~~~--Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (408)
+ .+. |++++++ +|++...+. ..++.+++.+.++..
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 9999998 997766553 236788888777533
No 136
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.85 E-value=1.4e-08 Score=78.83 Aligned_cols=82 Identities=28% Similarity=0.489 Sum_probs=69.0
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcC--CCcCcEEEEEeCCeEeEEeeC--CC
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFG--ER 147 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~~ 147 (408)
++++++.||++||++|+.+.|.+.++++.+...+.+..+|.. ..+++...++ +..+|++.++.+|.......| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999999877999999997 7889999999 999999998888865545555 34
Q ss_pred CHHHHHH
Q 015368 148 TRDVISA 154 (408)
Q Consensus 148 ~~~~l~~ 154 (408)
....+..
T Consensus 112 ~~~~~~~ 118 (127)
T COG0526 112 PKEALID 118 (127)
T ss_pred CHHHHHH
Confidence 4444443
No 137
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.83 E-value=4.1e-08 Score=74.28 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=82.0
Q ss_pred CcccccChhHHHHHhccC-CeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEee--
Q 015368 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH-- 238 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~-- 238 (408)
+++.|.+.++++.++... +..+|+||.+..+..+..|..+| .++.++.|+.+.+..+..++++. .|.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~ 76 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPE 76 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcH
Confidence 356788999999999877 89999999887778899999988 67799999999999999999887 48889894
Q ss_pred ----cCCCcccccCCc-CCHHH-HHHHHhcC
Q 015368 239 ----LEAGKATPFRHQ-FTRLA-IANFVTHT 263 (408)
Q Consensus 239 ----~~~~~~~~y~g~-~~~~~-i~~fi~~~ 263 (408)
..+.....|+|. .+.++ |..||..|
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 456678899988 67755 99999865
No 138
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.81 E-value=5.7e-08 Score=82.85 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=69.2
Q ss_pred CCCcEEE-EEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHHHH
Q 015368 72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (408)
Q Consensus 72 ~~~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (408)
.++.++| .||++||+.|..+++.+.++++++++ ++.++.|+++. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5676655 68999999999999999999999976 78888887653 2356778
Q ss_pred cCCC------cCcEEEEEe-CCeEeEEe----eCCCCHHHHHHHHHhHh
Q 015368 123 YNIL------AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREKM 160 (408)
Q Consensus 123 ~~i~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~~ 160 (408)
||+. .+|++++++ +|++.... .+.++.+++.+.++...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8884 589999998 88665544 45578899888886543
No 139
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.79 E-value=3.4e-08 Score=82.13 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=44.4
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc
Q 015368 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY 114 (408)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~ 114 (408)
+..++++.+...--.+|+++|.|||+||+.|+ .+|.+++++++|++ ++.++.+.|+
T Consensus 10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 33445554443334679999999999999997 59999999999987 8999999985
No 140
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.77 E-value=5.3e-08 Score=68.60 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=54.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (408)
+..|+++||++|+...+.+.+ .++.+..+|+++++. +++.+++.++|++++. |+. ..| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 567999999999999888765 268889999987654 5567999999999874 643 556 577888
Q ss_pred HHHHH
Q 015368 153 SAWVR 157 (408)
Q Consensus 153 ~~~i~ 157 (408)
.++++
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88763
No 141
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.75 E-value=5.1e-08 Score=78.36 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=63.1
Q ss_pred CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------cHhHHHHcCCCc
Q 015368 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------EKDLAKEYNILA 127 (408)
Q Consensus 72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------~~~~~~~~~i~~ 127 (408)
.+++++|.|| +.||+.|...+|.+.+++++++. ++.++.|..+. +..+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 78999999999999999999854 78888887653 234667788776
Q ss_pred Cc---------EEEEEe-CCeEeEEeeCCCC
Q 015368 128 YP---------TLYLFV-AGVRQFQFFGERT 148 (408)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g~~~ 148 (408)
.| ++++++ +|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 65 788888 7988888888754
No 142
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.72 E-value=3.9e-08 Score=79.22 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=38.6
Q ss_pred CCCcEEEEEecCCChh-HHhhhHHHHHHHHHhcC----CcEEEEEeCc
Q 015368 72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~~----~v~~~~v~~~ 114 (408)
.+++++|.||++||++ |....+.+.++++++++ ++.++.|+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 99999999999999975 3889888865
No 143
>PRK15000 peroxidase; Provisional
Probab=98.71 E-value=1.5e-07 Score=79.99 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK 121 (408)
Q Consensus 72 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~ 121 (408)
++++++|.||+. ||+.|..+++.+.+.++++++ ++.++.|++|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 999999999999999999976 788888887632 24567
Q ss_pred HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHh
Q 015368 122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVRE 158 (408)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~ 158 (408)
.||+. +.|++++++ +|++...+.|. ++.+++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 689999999 99877766653 577777777754
No 144
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.69 E-value=2.2e-07 Score=70.54 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=72.9
Q ss_pred ChhHHHHHhccCCeEEEEEec--CCCCcCHHHHHHHh-cc---CCceeEEEecC--------HhHHhhcCCCCCCCCCeE
Q 015368 169 TTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS-KL---HSDVNFYQTTS--------ADVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 169 ~~~~~~~~~~~~~~~vi~f~~--~~~~~~~~~~~~~a-~~---~~~~~f~~~~~--------~~l~~~~~i~~~~~~p~l 234 (408)
+.+.+++++..++.++|.|+. +||+. .+.+..+| ++ ...+.++.+.. .+|+++|+|+.. ++|+|
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~-gyPTl 84 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKE-SYPVI 84 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcC-CCCEE
Confidence 568899999999999999999 99995 35555555 22 34577776533 679999999721 49999
Q ss_pred EEeecCC-CcccccCCc-CCHHHHHHHHhcC
Q 015368 235 IFLHLEA-GKATPFRHQ-FTRLAIANFVTHT 263 (408)
Q Consensus 235 ~~~~~~~-~~~~~y~g~-~~~~~i~~fi~~~ 263 (408)
.+|+.++ ..+..|+|. ++.++|.+||+++
T Consensus 85 ~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 85 YLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999873 457899996 9999999999875
No 145
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.66 E-value=2.7e-07 Score=79.06 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-----------ccHhHHHHcCCCcCcEEEEEe-CC-e
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------LEKDLAKEYNILAYPTLYLFV-AG-V 138 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----------~~~~~~~~~~i~~~Pt~~~~~-~g-~ 138 (408)
.++.-|+.||.+.|+.|+.+.|.+..+++++ ++.+..|++| .+..+++++||..+|++++++ ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 4678899999999999999999999999999 5888888877 357899999999999999999 44 3
Q ss_pred EeEEeeCCCCHHHHHHHH
Q 015368 139 RQFQFFGERTRDVISAWV 156 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i 156 (408)
....-.|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 444456999999987654
No 146
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.66 E-value=1.2e-07 Score=64.71 Aligned_cols=60 Identities=33% Similarity=0.634 Sum_probs=52.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHH---HcCCCcCcEEEEEeCC
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAG 137 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~---~~~i~~~Pt~~~~~~g 137 (408)
++.||++||++|+++.+.+.++ +....++.+..++++......+ .+++.++|++++++.|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445589999999998877665 8899999999999876
No 147
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.63 E-value=4.1e-07 Score=79.73 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (408)
Q Consensus 72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 121 (408)
+++++++.|| ++||+.|..+++.+.+.++++++ ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667777777 89999999999999999999976 78888887764 235678
Q ss_pred HcCCC-----cCcEEEEEe-CCeEeEEee----CCCCHHHHHHHHH
Q 015368 122 EYNIL-----AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVR 157 (408)
Q Consensus 122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~ 157 (408)
.||+. ..|++++++ +|++...+. ..++.+++.+.|+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 89985 589999998 897766552 3467777777765
No 148
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.63 E-value=3.7e-07 Score=78.03 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=65.7
Q ss_pred cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHHHHcCCC
Q 015368 75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKEYNIL 126 (408)
Q Consensus 75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~~~i~ 126 (408)
.+++.||++||+.|..+++.+.++++++++ ++.++.|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999976 78899888764 23567888875
Q ss_pred ----c----CcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368 127 ----A----YPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (408)
Q Consensus 127 ----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (408)
+ .|++++++ +|++...+.+ .++.+++.+.|+..
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 35688888 8877766654 35677787777544
No 149
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.61 E-value=1.3e-06 Score=75.44 Aligned_cols=194 Identities=14% Similarity=0.158 Sum_probs=129.1
Q ss_pred hhHHHHHhccCCeEEEEEecCCCCc---CHHHHHHHh-ccC-----CceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368 170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH-----SDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (408)
Q Consensus 170 ~~~~~~~~~~~~~~vi~f~~~~~~~---~~~~~~~~a-~~~-----~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~ 237 (408)
.+.++..++....+++.|+++||.- ..+.|.++| ++. +++.++.+ ....++++|.|+ ++|++-++
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~---KyPTlKvf 79 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN---KYPTLKVF 79 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc---cCceeeee
Confidence 3567788888999999999999964 666677665 322 55667765 556799999999 79999999
Q ss_pred ecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccc-cccccccCCccEEEEEeeCCCchHHHHHHHHHHHHhcCCcce
Q 015368 238 HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIH-NAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNM 316 (408)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~-~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~ 316 (408)
+++.--.-.|.|.++.+++.+||++...-.+.++.+. .+..+.....-.+|.|....+..++ +.++++|.-++..
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey-~~~~kva~~lr~d--- 155 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY-DNLRKVASLLRDD--- 155 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH-HHHHHHHHHHhhc---
Confidence 9987666689999999999999998666556655433 3333433333456666665554444 5788999999988
Q ss_pred EEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc--CCccccCCCCC-ChHHHHHHHHHHhcCcc
Q 015368 317 LLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR--DAKKYVLNGEL-TLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 317 i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~--~~~~y~~~~~~-~~~~i~~Fi~~~~~gk~ 380 (408)
..|...=++.. ... .+...+ +.+++. ...--.|.|.+ +.+.+.+||++=--+-+
T Consensus 156 c~f~V~~gD~~-------~~~--~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV 212 (375)
T KOG0912|consen 156 CVFLVGFGDLL-------KPH--EPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV 212 (375)
T ss_pred cEEEeeccccc-------cCC--CCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence 77765543221 111 111123 334443 11111467744 45889999988555444
No 150
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.60 E-value=5.6e-07 Score=77.22 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------------HhHHHH
Q 015368 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------------KDLAKE 122 (408)
Q Consensus 72 ~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------------~~~~~~ 122 (408)
.+++ +|+.||++||+.|..+++.+.++++++++ ++.++.|++|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4565 56899999999999999999999999976 788888887642 346778
Q ss_pred cCCC-------cCcEEEEEe-CCeEeEEee----CCCCHHHHHHHHHh
Q 015368 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVRE 158 (408)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~ 158 (408)
||+. ..|++++++ +|++...+. ..++.+++.+.++.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 8873 579999998 897765542 23577888777754
No 151
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.60 E-value=3.3e-07 Score=65.14 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=50.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHH-----cCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE-----YNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (408)
++.||++||++|+++.+.+.+. ++.+-.+|+++++..... +++.++|++ ++++|.... ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5789999999999999988665 355667888877666555 389999997 577884433 345556
Q ss_pred HHHHHH
Q 015368 152 ISAWVR 157 (408)
Q Consensus 152 l~~~i~ 157 (408)
+.+.++
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 655543
No 152
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.60 E-value=4.3e-07 Score=68.38 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=78.5
Q ss_pred CceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368 266 PLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA 343 (408)
Q Consensus 266 p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 343 (408)
|-+.+++.+++......+.++++ ++.+|+. |+...+.+.++|+++++. +.|+.+|+++. +.+++.+++. .
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~ 72 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD---RMLCRSQGVN--S 72 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc---HHHHHHcCCC--c
Confidence 45678888898888766665555 5566776 899999999999999988 99999999874 4788999994 4
Q ss_pred CcEEEEEccCCccccCCCCCChHHHHHH
Q 015368 344 PRVIAYSARDAKKYVLNGELTLSSIKSF 371 (408)
Q Consensus 344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~F 371 (408)
.|.++++..+.....+.|..+.+.|.+|
T Consensus 73 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 73 YPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred cCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 6888888654445668899999999887
No 153
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.58 E-value=2.1e-06 Score=64.30 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=81.4
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHH-HHhcC--CcEEEEEeCc-----ccHhHHHHcCC--
Q 015368 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA-KMLKG--EADLVMVDAY-----LEKDLAKEYNI-- 125 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~-~~~~~--~v~~~~v~~~-----~~~~~~~~~~i-- 125 (408)
.....|+.-+|++.+.+.+.++|.|-... |--+-+..|.+++ +..+. ++-++.|.+. +|.+++++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45678999999999999999999997654 4456677899999 44433 8999999885 46899999999
Q ss_pred CcCcEEEEEe-CCeEeEEe--eCCCCHHHHHHHHHhHhC
Q 015368 126 LAYPTLYLFV-AGVRQFQF--FGERTRDVISAWVREKMT 161 (408)
Q Consensus 126 ~~~Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~ 161 (408)
..+|.+++|. +.+...+| .|+.+.+.|.+|+.++.+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 5689999999 44677888 899999999999998864
No 154
>PRK13189 peroxiredoxin; Provisional
Probab=98.58 E-value=6.4e-07 Score=77.39 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCC-cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHHHH
Q 015368 72 KNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (408)
Q Consensus 72 ~~~-~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (408)
.++ .+|+.||++||+.|..+++.+.++++++++ ++.++.|.+|. +..++++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 466 455678999999999999999999999976 78888887763 2346778
Q ss_pred cCCC-------cCcEEEEEe-CCeEeEEee----CCCCHHHHHHHHHhH
Q 015368 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (408)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (408)
||+. ..|++++++ +|++...+. ..++.+++.+.|+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 469999998 897655544 345777887777643
No 155
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.56 E-value=3.1e-07 Score=69.62 Aligned_cols=99 Identities=25% Similarity=0.269 Sum_probs=78.3
Q ss_pred CceEeeccccccccccC-CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368 266 PLVVTLTIHNAQFVFQD-PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN 342 (408)
Q Consensus 266 p~v~~lt~~~~~~~~~~-~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~ 342 (408)
|.+.+++.+++...... +.++++ +|.+|+. |+...+.+.++|+++.+. +.|+.+|++.. ..+++.+|+.
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~i~-- 72 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY---ESLCQQANIR-- 72 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch---HHHHHHcCCC--
Confidence 45678888888886544 345555 5566776 899999999999999888 99999999874 4788999994
Q ss_pred CCcEEEEEccC-CccccCCCCCC-hHHHHHHH
Q 015368 343 APRVIAYSARD-AKKYVLNGELT-LSSIKSFG 372 (408)
Q Consensus 343 ~~p~i~i~~~~-~~~y~~~~~~~-~~~i~~Fi 372 (408)
..|.++++..+ ...+.+.|..+ .++|.+||
T Consensus 73 ~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 73 AYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 36888888774 66777899876 89998885
No 156
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.8e-07 Score=74.21 Aligned_cols=164 Identities=14% Similarity=0.200 Sum_probs=108.0
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (408)
.+.+..++.|||+||.+|+++...++.+++.. .++.++.++.++.++++..+.+...|.+.++..|+.+.+..|.....
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 47789999999999999999999999999998 58999999999999999999999999999999888888888876655
Q ss_pred HHHHH---HHhHh---C----CCccccc--ChhHHHHHhcc--CCeEEEEEecC-----CCCcCHHHHHHHhccCCceeE
Q 015368 151 VISAW---VREKM---T----LGTYSIT--TTDEAERILTV--ESKLVLGFLHD-----LEGMESEELAAASKLHSDVNF 211 (408)
Q Consensus 151 ~l~~~---i~~~~---~----~~~~~i~--~~~~~~~~~~~--~~~~vi~f~~~-----~~~~~~~~~~~~a~~~~~~~f 211 (408)
....+ ..... + +.+.+.. ..+.++..+.. +...+++|... .|+-.......+....-.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~ 173 (227)
T KOG0911|consen 94 LVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTI 173 (227)
T ss_pred HHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeE
Confidence 44333 22221 0 1111110 01112223321 22334445532 345555566666554444544
Q ss_pred E-EecCHhHHhhcCC-CCCCCCCeEE
Q 015368 212 Y-QTTSADVAEFFHI-HPKSKRPALI 235 (408)
Q Consensus 212 ~-~~~~~~l~~~~~i-~~~~~~p~l~ 235 (408)
+ .-+++++++.++. +++..+|.+.
T Consensus 174 fdIL~DeelRqglK~fSdWPTfPQly 199 (227)
T KOG0911|consen 174 FDVLTDEELRQGLKEFSDWPTFPQLY 199 (227)
T ss_pred EeccCCHHHHHHhhhhcCCCCcccee
Confidence 4 4488888886653 3323455554
No 157
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.55 E-value=4.5e-07 Score=72.78 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=58.4
Q ss_pred EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHH-H--HHHHHHhcCCcEEEEEeCcccHhHHHHc--------CCCcC
Q 015368 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAY 128 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~ 128 (408)
..+.+.++.+..++|+++|.++.+||..|+.|..+ | .++++.++.++.-++||.++.+++.+.| |..|+
T Consensus 24 ~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 24 PWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp -SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred cCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 44567788888899999999999999999998864 3 5577777778999999999999998887 78999
Q ss_pred cEEEEEe-CCeEe
Q 015368 129 PTLYLFV-AGVRQ 140 (408)
Q Consensus 129 Pt~~~~~-~g~~~ 140 (408)
|+.+++. +|+..
T Consensus 104 Pl~vfltPdg~p~ 116 (163)
T PF03190_consen 104 PLTVFLTPDGKPF 116 (163)
T ss_dssp SEEEEE-TTS-EE
T ss_pred CceEEECCCCCee
Confidence 9999998 88654
No 158
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.55 E-value=1.1e-06 Score=75.59 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCcEE-EEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------------HhHHHH
Q 015368 72 KNRNVM-VMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------------KDLAKE 122 (408)
Q Consensus 72 ~~~~~~-v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------------~~~~~~ 122 (408)
.+|+++ +.||++||+.|..+++.+.++++++++ ++.++.|++|.. ..++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 456555 488999999999999999999999976 788888887632 356677
Q ss_pred cCCC-------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368 123 YNIL-------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (408)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (408)
||+. ..|++++++ +|++...+.+ .++.+++.+.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 369999998 8876665432 36788888877643
No 159
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.50 E-value=7.4e-07 Score=67.26 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=80.4
Q ss_pred eEeeccccccccccC-CccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQFVFQD-PRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~~~~~-~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
|..+|.+++...... ..+.++.|+ +++. |+...+.|.++++++.++ +.|+.+|++.. +.+++.+++.. .
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--~ 72 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDN---VKFAKVDCDEN---KELCKKYGVKS--V 72 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTS---HHHHHHTTCSS--S
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccc---cccchhhhhcc---chhhhccCCCC--C
Confidence 457888999988877 556665554 5565 999999999999999987 99999999864 58899999954 6
Q ss_pred cEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368 345 RVIAYSARDAKKYVLNGELTLSSIKSFGEE 374 (408)
Q Consensus 345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~ 374 (408)
|.++++..+.....+.|..+.+.|.+||++
T Consensus 73 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 73 PTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp SEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 888888765555578899999999999986
No 160
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.50 E-value=1.6e-06 Score=73.93 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=66.3
Q ss_pred CCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK 121 (408)
Q Consensus 72 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~ 121 (408)
.+++++|.||+ .||++|..+.+.+.+++++++. ++.++.|+++.. .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999995 8899999999999999999977 888888887632 34678
Q ss_pred HcCCC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHH
Q 015368 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR 157 (408)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~ 157 (408)
.||+. .+|+.++++ +|++...+.+ .++.+++.+.|.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 88885 478999999 8876665544 245555555554
No 161
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.49 E-value=1.4e-06 Score=66.44 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=71.6
Q ss_pred cccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-ccC------CceeEEEe---cCHhHHhhcCCCCCCC
Q 015368 164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLH------SDVNFYQT---TSADVAEFFHIHPKSK 230 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~------~~~~f~~~---~~~~l~~~~~i~~~~~ 230 (408)
+..+ +.+.++..++.++.++|.|+++||.++ .+.+..++ .+. +.+.|+.+ .+.++++++++. +
T Consensus 3 v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~---~ 78 (108)
T cd02996 3 IVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN---K 78 (108)
T ss_pred eEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC---c
Confidence 3455 557888888888889999999999863 45566555 221 24777655 567899999999 5
Q ss_pred CCeEEEeecCCCcccccCCcCCHHHHHHHH
Q 015368 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (408)
Q Consensus 231 ~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi 260 (408)
+|++++|+.+......|.|..+.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999987654568899999999999986
No 162
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.49 E-value=2.2e-05 Score=77.98 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=132.3
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe-CCeE-eEEeeCCCCH
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVR-QFQFFGERTR 149 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~-~~~~~g~~~~ 149 (408)
.+.+.++.|+.+.|..|.++...++++++ +.+++.+...|..++.+++++|++...|++.+++ +|+. -.+|.|-..-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 34557888999999999999999999884 4568999889999999999999999999999996 6533 3789998888
Q ss_pred HHHHHHHHhHh--CCCcccccChhHHHHHhccCCe-EEEEEecCCCCcCHHHHH---HHhccCCceeEEE---ecCHhHH
Q 015368 150 DVISAWVREKM--TLGTYSITTTDEAERILTVESK-LVLGFLHDLEGMESEELA---AASKLHSDVNFYQ---TTSADVA 220 (408)
Q Consensus 150 ~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~vi~f~~~~~~~~~~~~~---~~a~~~~~~~f~~---~~~~~l~ 220 (408)
.++..||.-.+ +..-..+ +.+..+.+..-+++ -+-.|..++|..+..... .++...+++..-. ...++++
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 522 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK 522 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence 88888887665 2233344 55556655554444 455678999998776544 3443333454333 3567899
Q ss_pred hhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHH
Q 015368 221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (408)
Q Consensus 221 ~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi 260 (408)
++|++. +.|++++- ....+.|..+.+++.+|+
T Consensus 523 ~~~~v~---~vP~~~i~-----~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 523 DEYGIM---SVPAIVVD-----DQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCCce---ecCEEEEC-----CEEEEeeCCCHHHHHHhh
Confidence 999998 58999853 124577888889999886
No 163
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.48 E-value=2.6e-06 Score=65.31 Aligned_cols=92 Identities=8% Similarity=-0.014 Sum_probs=71.2
Q ss_pred HHHcCCCcEEEEEecC----CChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc--HhHHHHcCCCcCcEEEEEe----CC
Q 015368 68 EFMGKNRNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV----AG 137 (408)
Q Consensus 68 ~~~~~~~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~----~g 137 (408)
...++.|.++|++|++ ||..|+.... =.++.+.++.++.+...|++.. .+++..+++.++|++.++. +.
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 3446789999999999 8999976541 1334444455788888888643 5689999999999999994 33
Q ss_pred eEeEEeeCCCCHHHHHHHHHhHh
Q 015368 138 VRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 138 ~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+++.+..|..+++++...++...
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHH
Confidence 56789999999999999887654
No 164
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.44 E-value=2.5e-06 Score=74.34 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=71.9
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-----------HhHHHHcCCCcCcEEEEEe-CCeEe
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAYPTLYLFV-AGVRQ 140 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----------~~~~~~~~i~~~Pt~~~~~-~g~~~ 140 (408)
++.-|+.||.+.|+.|+++.|.++.++++|+ +.+..|++|.. ..+++++||..+|++++++ +++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4689999999999999999999999999994 88888888754 4588999999999999999 43333
Q ss_pred -EEeeCCCCHHHHHHHHHhHh
Q 015368 141 -FQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~ 160 (408)
-.-.|.++.++|.+-|...+
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 33459999999988776654
No 165
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.44 E-value=9.7e-07 Score=67.48 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=77.8
Q ss_pred eEeeccccccccccC-CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQFVFQD-PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~~~~~-~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
+.+++.+++...... +.+.++ ++.+|+. |+.....+.++|+++.+. +.|+.+|++... ...+++.|++.. .
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~-~~~~~~~~~i~~--~ 75 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK-NKPLCGKYGVQG--F 75 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc-cHHHHHHcCCCc--C
Confidence 467888888887654 334544 5566776 888999999999999988 999999998743 357889999954 6
Q ss_pred cEEEEEccCC-----ccccCCCCCChHHHHHHHH
Q 015368 345 RVIAYSARDA-----KKYVLNGELTLSSIKSFGE 373 (408)
Q Consensus 345 p~i~i~~~~~-----~~y~~~~~~~~~~i~~Fi~ 373 (408)
|.+++++.++ ..+.+.|..+.++|.+||+
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 8888888743 3466889999999999984
No 166
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.43 E-value=5.9e-06 Score=71.30 Aligned_cols=177 Identities=12% Similarity=0.104 Sum_probs=113.8
Q ss_pred ccCCeEEEEEecCCCCcC---HHHHHHHh-cc---CCceeEE---EecCHhHHhhcCCCCCCCCCeEEEeecCCCccccc
Q 015368 178 TVESKLVLGFLHDLEGME---SEELAAAS-KL---HSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (408)
Q Consensus 178 ~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~---~~~~~f~---~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y 247 (408)
+.++.|++-||++||.++ .+.+.+.. .+ ..-++.+ .+.-+.++..|++. |+|+|.+++.+ ..+.|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq---GYPTIk~~kgd--~a~dY 115 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ---GYPTIKFFKGD--HAIDY 115 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC---CCceEEEecCC--eeeec
Confidence 456789999999999864 44555554 22 2233444 35677899999999 79999999865 78999
Q ss_pred CCcCCHHHHHHHHhcCCCCceEeecccccc--ccccCCccEEEEEeeCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcC
Q 015368 248 RHQFTRLAIANFVTHTKHPLVVTLTIHNAQ--FVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMN 325 (408)
Q Consensus 248 ~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~--~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~ 325 (408)
.|.++.++|.+|.....-|++..+++.... .+-....|.+++|-..+. -..+.+.+.|.+. +.+++.-+.
T Consensus 116 RG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~--PL~d~fidAASe~------~~~a~FfSa 187 (468)
T KOG4277|consen 116 RGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEG--PLFDAFIDAASEK------FSVARFFSA 187 (468)
T ss_pred CCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCC--cHHHHHHHHhhhh------eeeeeeecc
Confidence 999999999999999999999998874322 222233377777765543 3334555665543 222222222
Q ss_pred CcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368 326 SEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEE 374 (408)
Q Consensus 326 ~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~ 374 (408)
.+++.++ .+ +....|+++++.. +.++. ..+.+.+.+..||+.
T Consensus 188 seeVaPe----~~-~~kempaV~VFKD-etf~i-~de~dd~dLseWinR 229 (468)
T KOG4277|consen 188 SEEVAPE----EN-DAKEMPAVAVFKD-ETFEI-EDEGDDEDLSEWINR 229 (468)
T ss_pred ccccCCc----cc-chhhccceEEEcc-ceeEE-EecCchhHHHHHHhH
Confidence 2222222 11 2345688888753 33443 333456778888865
No 167
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.43 E-value=1.7e-06 Score=76.17 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=77.4
Q ss_pred CCcEEcC-hhhHHHHHcC---CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368 56 KDVVSLN-GKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (408)
Q Consensus 56 ~~~~~l~-~~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (408)
..+.+++ ++.|-..+.+ +..|+|.||.+.++.|..+-..+..+|.+|. .+.|++|.....+ +...|.+.+.|++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEE
Confidence 5677885 5778777743 3469999999999999999999999999998 7999999877654 7789999999999
Q ss_pred EEEeCCeEeEEeeC-------CCCHHHHHHHHHhHh
Q 015368 132 YLFVAGVRQFQFFG-------ERTRDVISAWVREKM 160 (408)
Q Consensus 132 ~~~~~g~~~~~~~g-------~~~~~~l~~~i~~~~ 160 (408)
++|++|..+..+.| ..+.+++..||.++-
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99999988877764 355677777777664
No 168
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.42 E-value=3.4e-06 Score=59.61 Aligned_cols=72 Identities=17% Similarity=0.391 Sum_probs=56.5
Q ss_pred EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeC-CCCHHHHHHHHH
Q 015368 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (408)
Q Consensus 79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (408)
.+++++|+.|..+...++++++.++ +.+-.++..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+++.+||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHhC
Confidence 3468889999999999999999983 77777777666666 9999999999944 774 46888 678899988874
No 169
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.41 E-value=1.5e-06 Score=66.93 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=81.0
Q ss_pred eEeeccccccccccCCc-cEEEEEeeCCC----ch--HHHHHHHHHHHHh--cCCcceEEEEEEEcCCcccccchhhhcc
Q 015368 268 VVTLTIHNAQFVFQDPR-KQLWLFAPAYG----SD--KVILTFEEVAKAL--KGKVNMLLHVYVEMNSEGVGRRVSQEFG 338 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~-~~~i~f~~~~~----~~--~~~~~~~~vA~~~--~~~~~~i~f~~vd~~~~~~~~~l~~~~~ 338 (408)
+..+|.+||.+...+.. +++++|.++.. |+ ...+.+.++|.++ .++ +.|+.+|++.+ +.+++.||
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~---v~~~kVD~d~~---~~La~~~~ 84 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG---IGFGLVDSKKD---AKVAKKLG 84 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC---CEEEEEeCCCC---HHHHHHcC
Confidence 67788899997666655 88888888765 66 6677788999998 677 99999999874 59999999
Q ss_pred CCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368 339 VSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL 376 (408)
Q Consensus 339 i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~ 376 (408)
+.. .|.++++.. |+...+.|..+.+.|.+||+++.
T Consensus 85 I~~--iPTl~lfk~-G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 LDE--EDSIYVFKD-DEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred Ccc--ccEEEEEEC-CEEEEeeCCCCHHHHHHHHHHHh
Confidence 954 688888874 44445889999999999999875
No 170
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.40 E-value=1.7e-06 Score=65.39 Aligned_cols=97 Identities=25% Similarity=0.243 Sum_probs=75.8
Q ss_pred eEeeccccccccccCCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
+.+++..++........ ++++ ++.+++. |....+.|.++|+++.++ +.|+.+|++. +..+++.+++. ..
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~---~~~~~~~~~i~--~~ 73 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADV---HQSLAQQYGVR--GF 73 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcc---hHHHHHHCCCC--cc
Confidence 45677788777654444 4444 4555665 889999999999999988 9999999876 45788999995 37
Q ss_pred cEEEEEccC-CccccCCCCCChHHHHHHH
Q 015368 345 RVIAYSARD-AKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 345 p~i~i~~~~-~~~y~~~~~~~~~~i~~Fi 372 (408)
|.+++++.+ ...+.+.|..+.++|.+|+
T Consensus 74 P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 74 PTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 888888763 5667789999999999996
No 171
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.39 E-value=2.3e-06 Score=65.31 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=77.0
Q ss_pred CceEeecccccccc---ccCCc-cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchh-hhccC
Q 015368 266 PLVVTLTIHNAQFV---FQDPR-KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVS-QEFGV 339 (408)
Q Consensus 266 p~v~~lt~~~~~~~---~~~~~-~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~-~~~~i 339 (408)
+.+.+++..|+.+. ..... .++.+|.+|+. |+...+.+.++|+++++. +.|+.+|++.+ ..++ +.+++
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~---~~l~~~~~~I 82 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP---QGKCRKQKHF 82 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC---hHHHHHhcCC
Confidence 45789999998875 34444 44556778887 899999999999999988 99999999864 3677 58998
Q ss_pred CCCCCcEEEEEccCCccccCCCCCChHHHHHHH
Q 015368 340 SGNAPRVIAYSARDAKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 340 ~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi 372 (408)
.. .|.+.++..+.....|.|..+.+.|..|+
T Consensus 83 ~~--~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 83 FY--FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cc--cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 43 67888886555556688999999998874
No 172
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.36 E-value=1.5e-06 Score=65.45 Aligned_cols=100 Identities=23% Similarity=0.285 Sum_probs=75.7
Q ss_pred eEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 346 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~ 346 (408)
+.+++.+++......+..++.++.+|+. |+...+.++++|+++++..+.+.|+.+|++.. ..+++.+++. ..|.
T Consensus 2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~--~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH---RELCSEFQVR--GYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC---hhhHhhcCCC--cCCE
Confidence 4567888888877666444556667777 89999999999999987101299999998864 4778899984 4688
Q ss_pred EEEEccCCccccCCCCCChHHHHHHH
Q 015368 347 IAYSARDAKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 347 i~i~~~~~~~y~~~~~~~~~~i~~Fi 372 (408)
++++..+.....+.|..+.++|.+||
T Consensus 77 ~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 88886544556688999999998885
No 173
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.36 E-value=5.7e-06 Score=71.65 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------cHhHHHHcCCCcCcEEEEEe-C-CeE
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFV-A-GVR 139 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~-~-g~~ 139 (408)
++.-|+.||.+.|++|+++.|.++.++++++ +.+..|++|. +...++++||..+|++++++ + |+.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4689999999999999999999999999994 7777777764 23467899999999999998 4 334
Q ss_pred eEEeeCCCCHHHHHHHHHhHh
Q 015368 140 QFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (408)
.-.-.|.++.++|.+-+....
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 444469999999988776554
No 174
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.35 E-value=1.9e-05 Score=69.90 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=124.8
Q ss_pred cccccChhHHHHHhccCCeEEEEEecCCCCc--------CHHHHHHH-hcc--CCceeEEEe---cCHhHHhhcCCCCCC
Q 015368 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM--------ESEELAAA-SKL--HSDVNFYQT---TSADVAEFFHIHPKS 229 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~--------~~~~~~~~-a~~--~~~~~f~~~---~~~~l~~~~~i~~~~ 229 (408)
+..+ +..++.+.++..+..++.|+.+..+. ..+.+..+ |+. ...+.|+.+ .+..+++++|+..
T Consensus 36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E-- 112 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE-- 112 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence 4455 56788889999999999888775543 11223443 343 466778876 6778999999995
Q ss_pred CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccC-C-ccEEEEEeeCCCchHHHHHHHHHH
Q 015368 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD-P-RKQLWLFAPAYGSDKVILTFEEVA 307 (408)
Q Consensus 230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~-~-~~~~i~f~~~~~~~~~~~~~~~vA 307 (408)
.++|.+|+.+ ..+.|.|.++.+-+..||..-....|..++...-.+.+.. . .+.++-|....+ ..+...|.+.|
T Consensus 113 -~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~-s~~yk~FeeAA 188 (383)
T PF01216_consen 113 -EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSED-SEHYKEFEEAA 188 (383)
T ss_dssp -TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTT-SHHHHHHHHHH
T ss_pred -cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCC-cHHHHHHHHHH
Confidence 7999999965 7999999999999999998866666777766543333332 2 255665555544 34778999999
Q ss_pred HHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCcccc-CCCCCChHHHHHHHHHHhcCcc
Q 015368 308 KALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV-LNGELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 308 ~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~-~~~~~~~~~i~~Fi~~~~~gk~ 380 (408)
..|... +.|.-+- .+.+++.+|+. +--+-++.+ -...-. ...+.+.++|.+||++...-.+
T Consensus 189 e~F~p~---IkFfAtf------d~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptl 251 (383)
T PF01216_consen 189 EHFQPY---IKFFATF------DKKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTL 251 (383)
T ss_dssp HHCTTT---SEEEEE-------SHHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SE
T ss_pred HhhcCc---eeEEEEe------cchhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHh
Confidence 999998 8887664 35778888884 233445544 333333 3447788999999998877766
No 175
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.33 E-value=3.5e-06 Score=60.90 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=82.1
Q ss_pred CceEeeccccccccccCCc--cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccccchhhhccCC
Q 015368 266 PLVVTLTIHNAQFVFQDPR--KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVGRRVSQEFGVS 340 (408)
Q Consensus 266 p~v~~lt~~~~~~~~~~~~--~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~ 340 (408)
|.++.++.++...+..... -+++.|....+ --+++..++++|+++... +++.|+|+|-++. -.....-+.|||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~n-p~LsiIWIDPD~FPllv~yWektF~ID 79 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDN-PDLSIIWIDPDDFPLLVPYWEKTFGID 79 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcC-CCceEEEECCccCchhhHHHHhhcCcc
Confidence 4567778888777776555 56777876654 568999999999999854 4599999998876 2234455788998
Q ss_pred CCCCcEEEEEcc---CCccccCCC---CCChHHHHHHHHHHh
Q 015368 341 GNAPRVIAYSAR---DAKKYVLNG---ELTLSSIKSFGEEFL 376 (408)
Q Consensus 341 ~~~~p~i~i~~~---~~~~y~~~~---~~~~~~i~~Fi~~~~ 376 (408)
-. .|.|.+.+. .+..|.+++ ..+.++++.||++++
T Consensus 80 l~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 80 LF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 76 578887776 566777765 378899999999975
No 176
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.31 E-value=1.6e-06 Score=62.80 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=44.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHcCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.|+++||++|+.+.+.+.++. ....+.+..|+.+++. .+.+.+++.++|+++ -+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 47899999999999999999876 3334778888876543 266778999999983 4674
No 177
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.31 E-value=4e-06 Score=63.07 Aligned_cols=99 Identities=26% Similarity=0.361 Sum_probs=75.2
Q ss_pred eccccccccccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEE
Q 015368 271 LTIHNAQFVFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA 348 (408)
Q Consensus 271 lt~~~~~~~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~ 348 (408)
|+.+++......+.+.++. +.+++. |+.....+.++|..+.+. +++.|+.+|++.. ..+++.|++. ..|.++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~---~~~~~~~~i~--~~P~~~ 74 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAE---KDLASRFGVS--GFPTIK 74 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccch---HHHHHhCCCC--cCCEEE
Confidence 3556666666655565554 455665 888888999999999872 1399999998764 5788899994 478988
Q ss_pred EEccCCccccCCCCCChHHHHHHHHHH
Q 015368 349 YSARDAKKYVLNGELTLSSIKSFGEEF 375 (408)
Q Consensus 349 i~~~~~~~y~~~~~~~~~~i~~Fi~~~ 375 (408)
++..++..+.+.|..+.++|..|+++.
T Consensus 75 ~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 75 FFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EecCCCcceeecCCCCHHHHHHHHHhc
Confidence 888755577789999999999999874
No 178
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.30 E-value=3.1e-06 Score=66.22 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=49.7
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc---CCCcCcEEEEEe-CCeEeEEeeCCC
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV-AGVRQFQFFGER 147 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~-~g~~~~~~~g~~ 147 (408)
..+..++-|..+||+.|+...|.+.++++... ++.+-.+..|++.++..+| |...+|++++++ +|++..++ |++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ger 117 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GER 117 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCC
Confidence 34567888999999999999999999999865 6777777777888777655 678899999998 67666665 444
Q ss_pred C
Q 015368 148 T 148 (408)
Q Consensus 148 ~ 148 (408)
.
T Consensus 118 P 118 (129)
T PF14595_consen 118 P 118 (129)
T ss_dssp -
T ss_pred C
Confidence 3
No 179
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.29 E-value=2.7e-06 Score=68.75 Aligned_cols=89 Identities=25% Similarity=0.265 Sum_probs=78.7
Q ss_pred CcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368 57 DVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (408)
Q Consensus 57 ~~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (408)
...++. ..+|-+...+..-|++.||.+.-..|+-+-..++.+|+.+- ...|++||....|-++.+++|..+|++.+|.
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k 145 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFK 145 (211)
T ss_pred eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence 344554 67777777778889999999999999999999999999876 6899999999999999999999999999999
Q ss_pred CCeEeEEeeCC
Q 015368 136 AGVRQFQFFGE 146 (408)
Q Consensus 136 ~g~~~~~~~g~ 146 (408)
+|..+.++.|.
T Consensus 146 ~g~~~D~iVGF 156 (211)
T KOG1672|consen 146 NGKTVDYVVGF 156 (211)
T ss_pred cCEEEEEEeeH
Confidence 99888888774
No 180
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.27 E-value=6.5e-06 Score=61.89 Aligned_cols=97 Identities=24% Similarity=0.190 Sum_probs=76.9
Q ss_pred eEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 345 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p 345 (408)
+.+++.+++..+... ..++.++.+|+. |+...+.+.++|..+.+ . +.|+.+|++.. +.+++.+++. ..|
T Consensus 3 v~~l~~~~f~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~---v~~~~vd~~~~---~~~~~~~~i~--~~P 73 (101)
T cd02994 3 VVELTDSNWTLVLEG-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLG---INVAKVDVTQE---PGLSGRFFVT--ALP 73 (101)
T ss_pred eEEcChhhHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCC---eEEEEEEccCC---HhHHHHcCCc--ccC
Confidence 567888898887754 366667788887 99999999999998764 4 99999999864 4788899994 367
Q ss_pred EEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368 346 VIAYSARDAKKYVLNGELTLSSIKSFGEE 374 (408)
Q Consensus 346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~ 374 (408)
.++++.. |+...+.|..+.++|.+|+++
T Consensus 74 t~~~~~~-g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKD-GVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCC-CCEEEecCCCCHHHHHHHHhC
Confidence 8877754 555668899999999999873
No 181
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.26 E-value=8.4e-06 Score=62.14 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=47.9
Q ss_pred cCCCcEEEEEec-------CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-------hHHH--HcCCCcCcEEEEE
Q 015368 71 GKNRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAK--EYNILAYPTLYLF 134 (408)
Q Consensus 71 ~~~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~--~~~i~~~Pt~~~~ 134 (408)
.++++++|+|++ +|||.|....|.+++.-....++..++.|.+...+ .+-+ ++++.++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 456899999997 59999999999999988887668888888774322 2333 5999999999999
Q ss_pred eCC
Q 015368 135 VAG 137 (408)
Q Consensus 135 ~~g 137 (408)
..|
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 866
No 182
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.1e-05 Score=70.31 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=88.0
Q ss_pred ccCCCcEEcChhhHHHHHcCC---CcEEEEEecC----CChhHHhhhHHHHHHHHHhcC--------CcEEEEEeCcccH
Q 015368 53 LYAKDVVSLNGKNFSEFMGKN---RNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEK 117 (408)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~---~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~~ 117 (408)
.+...++.++++.|...+... =.++|.|.|. .|.-|+++..+++-++..+.. ++-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 355789999999999988532 2478889884 699999999999999998754 6889999999999
Q ss_pred hHHHHcCCCcCcEEEEEe--CCeEe--EE---eeCCCCHHHHHHHHHhHhCCCc
Q 015368 118 DLAKEYNILAYPTLYLFV--AGVRQ--FQ---FFGERTRDVISAWVREKMTLGT 164 (408)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~--~g~~~--~~---~~g~~~~~~l~~~i~~~~~~~~ 164 (408)
++.++++++..|++++|. .|+.. .. ++-...+|++.+|+++...-.+
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999999999999999995 34221 11 1212348999999988874333
No 183
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.25 E-value=8.4e-06 Score=59.08 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=58.0
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcC--CCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR 149 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (408)
-++.|+.+||++|++....++++..+++ ++.+..+|+++++ ++.+..+ +.++|+++ .+|+.+ | ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i----g--g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI----G--GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE----c--CH
Confidence 3678999999999999999999998763 7888888888653 4555444 47899975 477442 3 44
Q ss_pred HHHHHHHHhHhC
Q 015368 150 DVISAWVREKMT 161 (408)
Q Consensus 150 ~~l~~~i~~~~~ 161 (408)
+++.++++++++
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T PRK11200 73 TDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHhcc
Confidence 778888877653
No 184
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.9e-06 Score=64.69 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=81.2
Q ss_pred CceEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368 266 PLVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN 342 (408)
Q Consensus 266 p~v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~ 342 (408)
..+...+.+.+.. +.++..|+++ |++.|++ |+...+.+.+++.++.++ +.|+.+|.++. .++...|+|.
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~---~ela~~Y~I~-- 114 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH---PELAEDYEIS-- 114 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc---cchHhhccee--
Confidence 3455555555554 3444557666 5567887 999999999999999999 99999999874 5889999994
Q ss_pred CCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368 343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~ 377 (408)
..|.++++..+.++-.+-|..+.+.+.+||++++.
T Consensus 115 avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 115 AVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 47899988865555567888999999999999864
No 185
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.20 E-value=1.6e-05 Score=59.19 Aligned_cols=88 Identities=18% Similarity=0.335 Sum_probs=72.5
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC-eEeEE
Q 015368 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQ 142 (408)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~ 142 (408)
+.++..+..+++++|-|+.++|. .....|.++|+.+++.+.|+.+. +.++++++++.. |++.+|+++ .....
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~ 80 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVE 80 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCcc
Confidence 44566677889999999999987 47788999999998889998887 567888888764 899999853 45677
Q ss_pred eeCCCCHHHHHHHHHh
Q 015368 143 FFGERTRDVISAWVRE 158 (408)
Q Consensus 143 ~~g~~~~~~l~~~i~~ 158 (408)
|.|..+.+.|.+||..
T Consensus 81 y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 81 YDGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999999964
No 186
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.17 E-value=1.4e-05 Score=60.41 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=74.1
Q ss_pred eEeeccccccccccCC-ccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQFVFQDP-RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~-~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
+.+++.+++....... .+.++ ++.+++. |+.....+.++|+.+.+. .++.|+.+|++.. .++..+++ ...
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----~~~~~~~~--~~~ 74 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN----DVPSEFVV--DGF 74 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch----hhhhhccC--CCC
Confidence 5688899988876554 45544 5567776 899999999999998762 1299999998753 45667777 357
Q ss_pred cEEEEEccCC--ccccCCCCCChHHHHHHH
Q 015368 345 RVIAYSARDA--KKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 345 p~i~i~~~~~--~~y~~~~~~~~~~i~~Fi 372 (408)
|.++++..++ ....+.|..+.+.|.+||
T Consensus 75 Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 75 PTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 8888887643 566789999999999886
No 187
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.17 E-value=1.9e-05 Score=59.00 Aligned_cols=89 Identities=12% Similarity=0.234 Sum_probs=70.6
Q ss_pred ChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-cc--CCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeec
Q 015368 169 TTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KL--HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (408)
Q Consensus 169 ~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~--~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~ 239 (408)
+..++...+.+.+.+++.|+.+||..+ .+.+..++ .+ ...+.|+.+ .+..+++++++. +.|++++|++
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~---~~Pt~~~~~~ 80 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR---GYPTIKLFPN 80 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCC---CCCEEEEEcC
Confidence 456888888888799999999999864 44455655 45 477888776 346899999998 5999999988
Q ss_pred CCCcccccCCcCCHHHHHHHH
Q 015368 240 EAGKATPFRHQFTRLAIANFV 260 (408)
Q Consensus 240 ~~~~~~~y~g~~~~~~i~~fi 260 (408)
++.....|.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 756788899998889998885
No 188
>PRK09381 trxA thioredoxin; Provisional
Probab=98.17 E-value=1.5e-05 Score=60.78 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=77.4
Q ss_pred eEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
+.+++.+++.. +...+.++++ ++.+++. |....+.+++++.++.++ +.|+.+|++.. ..+++.|++. ..
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~~ 76 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN---PGTAPKYGIR--GI 76 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC---hhHHHhCCCC--cC
Confidence 45667777764 3444445555 5556676 899999999999999988 99999999864 4677889984 47
Q ss_pred cEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368 345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFL 376 (408)
Q Consensus 345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~ 376 (408)
|.+++++.+...+.+.|..+.++|..|++..+
T Consensus 77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 77 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 88888875555667888889999999998765
No 189
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=9.5e-06 Score=60.12 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=57.8
Q ss_pred hhHHHHH---cCCCcEEEEEec--------CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-------HhHHHHcCC
Q 015368 64 KNFSEFM---GKNRNVMVMFYA--------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNI 125 (408)
Q Consensus 64 ~~~~~~~---~~~~~~~v~f~a--------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~i 125 (408)
++|++.+ .+++.++|+|++ +|||.|.+..|.+.+.-+....++.|+.|++.+- -.+-...++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 4565544 356679999998 6999999999999999997777999999998643 235556677
Q ss_pred -CcCcEEEEEeC
Q 015368 126 -LAYPTLYLFVA 136 (408)
Q Consensus 126 -~~~Pt~~~~~~ 136 (408)
.++||+.=+.+
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999988874
No 190
>PHA02278 thioredoxin-like protein
Probab=98.15 E-value=1.8e-05 Score=59.40 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=66.2
Q ss_pred cChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe--c-----CHhHHhhcCCCCCCCCCeEEE
Q 015368 168 TTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT--T-----SADVAEFFHIHPKSKRPALIF 236 (408)
Q Consensus 168 ~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~--~-----~~~l~~~~~i~~~~~~p~l~~ 236 (408)
++.+++.+.+..+++++|.|+++||+++ .+.+..++ +......|..+ . ..++++++++. +.|++++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~---~iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM---STPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCc---cccEEEE
Confidence 4678888888888999999999999984 45566666 33344555543 2 15799999999 5999999
Q ss_pred eecCCCcccccCCcCCHHHHHHH
Q 015368 237 LHLEAGKATPFRHQFTRLAIANF 259 (408)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~i~~f 259 (408)
|+.+. ......|..+.+.+.+|
T Consensus 79 fk~G~-~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQ-LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCE-EEEEEeCCCCHHHHHhh
Confidence 99763 44567787777888776
No 191
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.15 E-value=2.1e-05 Score=60.03 Aligned_cols=93 Identities=11% Similarity=0.178 Sum_probs=67.5
Q ss_pred cccccChhHHHHHhc---cCCeEEEEEecCCCCcC---HHHHHHHh-ccCC-ceeEEEec----CHhHHh-hcCCCCCCC
Q 015368 164 TYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQTT----SADVAE-FFHIHPKSK 230 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~---~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~~----~~~l~~-~~~i~~~~~ 230 (408)
+.++ +.++++.+.. .++++++.|+.+||.++ .+.+.+++ .+.+ .+.++.+. +..++. .+++. +
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~---~ 78 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK---S 78 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC---c
Confidence 3444 4467777763 46789999999999874 44566666 4444 47776642 345665 58998 5
Q ss_pred CCeEEEeecCCCcccccCCc-CCHHHHHHHH
Q 015368 231 RPALIFLHLEAGKATPFRHQ-FTRLAIANFV 260 (408)
Q Consensus 231 ~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi 260 (408)
+|++++|..+......|+|. .+.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999999877678899995 8999999986
No 192
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.14 E-value=3e-05 Score=59.10 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=81.4
Q ss_pred EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHH---hcCCcEEEEEeCcccHhHHHHcCCCc--CcEEEE
Q 015368 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL 133 (408)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~---~~~~v~~~~v~~~~~~~~~~~~~i~~--~Pt~~~ 133 (408)
.++|.++.......+.+..+.|+.+ ..-....+.+.++|++ +++++.|+.+|.++.....+.||++. .|.+.+
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 4577788888888887877777722 3346788899999999 99999999999999888999999997 899999
Q ss_pred Ee-CCeEeEE-eeCCCCHHHHHHHHHhHhC
Q 015368 134 FV-AGVRQFQ-FFGERTRDVISAWVREKMT 161 (408)
Q Consensus 134 ~~-~g~~~~~-~~g~~~~~~l~~~i~~~~~ 161 (408)
.. ++..... +.+..+.+.|.+|++..+.
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 98 3312333 5688999999999988763
No 193
>PRK10996 thioredoxin 2; Provisional
Probab=98.14 E-value=1.3e-05 Score=64.09 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=76.7
Q ss_pred eEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368 268 VVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 345 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p 345 (408)
+.+++..++..+...+.++++ ++.+|+. ++.....|.++++++.++ +.|+.+|.+.. +.+.+.|++. ..|
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~---~~l~~~~~V~--~~P 108 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE---RELSARFRIR--SIP 108 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC---HHHHHhcCCC--ccC
Confidence 345666777776666665544 5556676 888889999999999988 99999998764 5788999994 368
Q ss_pred EEEEEccCCccccCCCCCChHHHHHHHHHH
Q 015368 346 VIAYSARDAKKYVLNGELTLSSIKSFGEEF 375 (408)
Q Consensus 346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~ 375 (408)
.+++++.+.....+.|..+.+.+.+|+++.
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 888887544444578889999999999875
No 194
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.13 E-value=1.9e-05 Score=59.72 Aligned_cols=98 Identities=20% Similarity=0.350 Sum_probs=75.0
Q ss_pred eEeeccccccccccCCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368 268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN 342 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~ 342 (408)
+.+++.+++........ +.++ ++.+++. |.+..+.+.++++++. ++ +.|+.+|++.. ...+++.+++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~--~~~~~~~~~i~-- 74 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDD---VVIAKVDADEA--NKDLAKKYGVS-- 74 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCC---EEEEEEECCCc--chhhHHhCCCC--
Confidence 45778888887765544 5555 4555665 8888999999999987 45 99999998872 24788999995
Q ss_pred CCcEEEEEccC-CccccCCCCCChHHHHHHH
Q 015368 343 APRVIAYSARD-AKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 343 ~~p~i~i~~~~-~~~y~~~~~~~~~~i~~Fi 372 (408)
..|.++++..+ ...+.+.|..+.++|.+|+
T Consensus 75 ~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 75 GFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 36888888764 4667788999999999885
No 195
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.12 E-value=1.9e-05 Score=68.68 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=60.9
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe------------------C--------------------
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD------------------A-------------------- 113 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~------------------~-------------------- 113 (408)
+++.+++.|..+.||+|+++.+++.++.+. ++.+..+. |
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 356789999999999999999998877542 23332211 1
Q ss_pred ------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 114 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
+++.++++++||+|+|+++ +.+|+. ..|..+.++|.++|.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1235678999999999998 778843 48999999999999754
No 196
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.08 E-value=2.9e-05 Score=54.24 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=46.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc----CCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY----NILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (408)
++.|+++||++|....+.+.+. ++.+..++++.++...+.+ ++.++|++++ +|+ ...| .+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 5789999999999988777652 5777788887765544433 6889999865 452 3333 466666
Q ss_pred HHH
Q 015368 153 SAW 155 (408)
Q Consensus 153 ~~~ 155 (408)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 655
No 197
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.07 E-value=2e-05 Score=67.68 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=80.3
Q ss_pred ceEeeccccccccccC-----CccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368 267 LVVTLTIHNAQFVFQD-----PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339 (408)
Q Consensus 267 ~v~~lt~~~~~~~~~~-----~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i 339 (408)
.+.+++..++...... ..++ +.++.+|+. |+...+.+.++|+++++. +.|+.+|++.+ ..+++.|++
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~---~~l~~~~~I 104 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA---LNLAKRFAI 104 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc---HHHHHHcCC
Confidence 4778888888876542 2344 446667877 899999999999999988 99999998864 478899999
Q ss_pred CCCCCcEEEEEccCCcccc-CCCCCChHHHHHHHHHHhcC
Q 015368 340 SGNAPRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 340 ~~~~~p~i~i~~~~~~~y~-~~~~~~~~~i~~Fi~~~~~g 378 (408)
.. .|.+++++. |+.+. ..|..+.++|.+|+.+-...
T Consensus 105 ~~--~PTl~~f~~-G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 105 KG--YPTLLLFDK-GKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred Cc--CCEEEEEEC-CEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 53 688888874 55554 46788999999999888755
No 198
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.07 E-value=3.3e-05 Score=57.37 Aligned_cols=85 Identities=9% Similarity=0.180 Sum_probs=63.1
Q ss_pred HHHHh-cc-CCeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368 173 AERIL-TV-ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (408)
Q Consensus 173 ~~~~~-~~-~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~ 243 (408)
+++.+ +. +.+++|.|+++||.++. +.+..++ .+.+.+.++.+ ....+++++++. ++|++++|+.+ ..
T Consensus 3 f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~~~g-~~ 78 (96)
T cd02956 3 FQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ---ALPTVYLFAAG-QP 78 (96)
T ss_pred hHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC---CCCEEEEEeCC-EE
Confidence 44444 33 56899999999998844 4455555 45556666654 677899999999 69999999844 34
Q ss_pred ccccCCcCCHHHHHHHHh
Q 015368 244 ATPFRHQFTRLAIANFVT 261 (408)
Q Consensus 244 ~~~y~g~~~~~~i~~fi~ 261 (408)
...+.|..+.++|..|++
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 557899999999999974
No 199
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.05 E-value=3e-05 Score=58.60 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=66.9
Q ss_pred hHHHHHhccCCeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEec-------CHhHHhhcCCCCCCCCCeEEE
Q 015368 171 DEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQTT-------SADVAEFFHIHPKSKRPALIF 236 (408)
Q Consensus 171 ~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~~-------~~~l~~~~~i~~~~~~p~l~~ 236 (408)
+.+.+.++.+++++|.|+.+||.++..... .++ .+.+++.+..+. ...+++++++. ++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~---~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVF---GPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCC---CCCEEEE
Confidence 567778888899999999999998655432 333 344467766542 35788999998 5999999
Q ss_pred eec-CCCcccccCCcCCHHHHHHHHh
Q 015368 237 LHL-EAGKATPFRHQFTRLAIANFVT 261 (408)
Q Consensus 237 ~~~-~~~~~~~y~g~~~~~~i~~fi~ 261 (408)
|++ ++.....+.|..+.+++.+||+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 987 5556778899999999998874
No 200
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.05 E-value=2.2e-05 Score=59.23 Aligned_cols=99 Identities=24% Similarity=0.284 Sum_probs=75.6
Q ss_pred eEeeccccccccccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA 343 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 343 (408)
+..++..++......+.+.++. +.+|+. |......+.++++.+. +. +.|+.+|++... ...+++.+|+. .
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-~~~~~~~~~i~--~ 75 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGK---GVLAAVDCTKPE-HDALKEEYNVK--G 75 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCc---eEEEEEECCCCc-cHHHHHhCCCc--c
Confidence 4567777888777776665554 556666 8899999999999987 55 899999998743 45778899994 3
Q ss_pred CcEEEEEccCCccccCCCCCChHHHHHHH
Q 015368 344 PRVIAYSARDAKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi 372 (408)
.|.++++..+.....+.|..+.+.+.+|+
T Consensus 76 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 67888887644466788988999998885
No 201
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.05 E-value=2.8e-05 Score=58.54 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=74.7
Q ss_pred eEeeccccccccccCCccEEEEEeeC---CC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWLFAPA---YG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA 343 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~f~~~---~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 343 (408)
+++++..|+.+....+.+.+++|... +. |......+.++|+++.++ +.|+.+|++++ +.++..|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~---~~la~~f~V~s-- 83 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE---QALAARFGVLR-- 83 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC---HHHHHHcCCCc--
Confidence 56788899998887767777777654 43 899999999999999999 99999998874 48899999954
Q ss_pred CcEEEEEccCCccccCCCCCChHHHH
Q 015368 344 PRVIAYSARDAKKYVLNGELTLSSIK 369 (408)
Q Consensus 344 ~p~i~i~~~~~~~y~~~~~~~~~~i~ 369 (408)
.|.++++..+.....+.|..+.+++.
T Consensus 84 IPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 84 TPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCEEEEEECCEEEEEEeCccCHHHHh
Confidence 78888887644444577877777654
No 202
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.04 E-value=7.8e-05 Score=57.15 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=70.2
Q ss_pred CcccccChhHHHHHhccCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEE
Q 015368 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~ 236 (408)
.+..|++.+++.+.+.....+++.|+.+||.++. +.+..+++....+.|+.+ ....+++++++. +.|++++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~---~vPt~l~ 81 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK---VLPTVIL 81 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc---cCCEEEE
Confidence 4667888899999998888999999999999854 456666644456788765 556789999999 5999999
Q ss_pred eecCCCc-------ccccCCcCCHHHHHHHH
Q 015368 237 LHLEAGK-------ATPFRHQFTRLAIANFV 260 (408)
Q Consensus 237 ~~~~~~~-------~~~y~g~~~~~~i~~fi 260 (408)
|+.+... .....++++.+++..|+
T Consensus 82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9976411 11112457778888876
No 203
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.02 E-value=2.8e-05 Score=58.21 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=64.4
Q ss_pred cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCC
Q 015368 285 KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE 362 (408)
Q Consensus 285 ~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~ 362 (408)
++++ ++.+++. |......++++++++.++ +.|+.+|++.. ..+++.||+. ..|.++++..+.....+.|.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~~P~~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN---PDIAAKYGIR--SIPTLLLFKNGKEVDRSVGA 87 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC---HHHHHHcCCC--cCCEEEEEeCCcEeeeecCC
Confidence 4444 4555665 888889999999999988 99999998864 4778999995 36888888654444556777
Q ss_pred CChHHHHHHHHHH
Q 015368 363 LTLSSIKSFGEEF 375 (408)
Q Consensus 363 ~~~~~i~~Fi~~~ 375 (408)
.+.+.+.+|+++.
T Consensus 88 ~~~~~l~~~l~~~ 100 (101)
T TIGR01068 88 LPKAALKQLINKN 100 (101)
T ss_pred CCHHHHHHHHHhh
Confidence 8889999999865
No 204
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.00 E-value=0.00013 Score=53.88 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=65.4
Q ss_pred ChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCc-CcEEEEE
Q 015368 62 NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILA-YPTLYLF 134 (408)
Q Consensus 62 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~-~Pt~~~~ 134 (408)
+.+++++++.+ .++++|.=.++.|+-.......|++..+...+++.++.+|+-++++ ++.+|||.. -|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 45778887755 7889998899999999999999999999887679999999988765 578899974 7999999
Q ss_pred eCCeEeEEee-CCCCHHHH
Q 015368 135 VAGVRQFQFF-GERTRDVI 152 (408)
Q Consensus 135 ~~g~~~~~~~-g~~~~~~l 152 (408)
++|+.+..-. +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9997765443 44666554
No 205
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.98 E-value=3.2e-05 Score=65.93 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEE--EEEe-------------------------------------
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL--VMVD------------------------------------- 112 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~--~~v~------------------------------------- 112 (408)
+++..++.|..+.|++|+++.+.+.+ ..+++.+ ..+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 35789999999999999999999876 1122222 2211
Q ss_pred ------CcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368 113 ------AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 113 ------~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
++++..+++++||+++|+++ +.+|+. ..|..+.++|.+||
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 12234678899999999997 778854 57888888888764
No 206
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.98 E-value=3.1e-05 Score=57.96 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=60.2
Q ss_pred cCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe----cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcC
Q 015368 179 VESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT----TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF 251 (408)
Q Consensus 179 ~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~----~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~ 251 (408)
.++.++|.|+++||.++ .+.+.++++....+.++.+ ....+++++++. ++|++++|+.+ ....|.|..
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~---~~PT~~lf~~g--~~~~~~G~~ 91 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVV---GFPTILLFNST--PRVRYNGTR 91 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCe---ecCEEEEEcCC--ceeEecCCC
Confidence 46789999999999874 4566677643345656544 346789999998 59999999876 677899999
Q ss_pred CHHHHHHHH
Q 015368 252 TRLAIANFV 260 (408)
Q Consensus 252 ~~~~i~~fi 260 (408)
+.++|.+||
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999986
No 207
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.97 E-value=5.1e-05 Score=54.94 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=68.9
Q ss_pred eeccccccccccCCccEEEEEeeCCC---chHHHHHHHHHHHHhc----CCc-ceEEEEEEEcCCcccccchhhhccCCC
Q 015368 270 TLTIHNAQFVFQDPRKQLWLFAPAYG---SDKVILTFEEVAKALK----GKV-NMLLHVYVEMNSEGVGRRVSQEFGVSG 341 (408)
Q Consensus 270 ~lt~~~~~~~~~~~~~~~i~f~~~~~---~~~~~~~~~~vA~~~~----~~~-~~i~f~~vd~~~~~~~~~l~~~~~i~~ 341 (408)
.||+.+...+... |.+++|.+.++ .+...+.++.+|.+.- .+. ..-....++.+++ ....+.+..+++.
T Consensus 3 ~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede-~tdsLRDf~nL~d 79 (116)
T cd03071 3 ELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD-MTDSLRDYTNLPE 79 (116)
T ss_pred cccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch-HHHHHHHhcCCCc
Confidence 3555554444333 78899997755 5677778888887652 110 0123333333333 2556667778854
Q ss_pred CCCcEEEEEcc-CCccccCCC-CCChHHHHHHHHHHhc
Q 015368 342 NAPRVIAYSAR-DAKKYVLNG-ELTLSSIKSFGEEFLE 377 (408)
Q Consensus 342 ~~~p~i~i~~~-~~~~y~~~~-~~~~~~i~~Fi~~~~~ 377 (408)
.-|.+++.+. ++++|.++. .+|++.+.+|+++++.
T Consensus 80 -~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 80 -AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred -cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhhC
Confidence 4678888887 889999864 8999999999999863
No 208
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.97 E-value=8.1e-05 Score=56.64 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=71.8
Q ss_pred EcChhhHHHHHcCCCcEEEEE---ecCCChhHHhhhHHHHHHHHHhc-CCcEEEEEeCcccHhHHHHcCCCc----CcEE
Q 015368 60 SLNGKNFSEFMGKNRNVMVMF---YANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILA----YPTL 131 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f---~a~wC~~C~~~~p~~~~~~~~~~-~~v~~~~v~~~~~~~~~~~~~i~~----~Pt~ 131 (408)
.+|.++..... ..+.+++++ |+..-..-....+.+.++|+.++ +++.|+.+|.++.....+.||+.. .|++
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVV 81 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEE
Confidence 35566666554 233344432 22233445678889999999999 699999999999888999999984 9999
Q ss_pred EEEe-CCeEeEEeeCCC-CHHHHHHHHHhH
Q 015368 132 YLFV-AGVRQFQFFGER-TRDVISAWVREK 159 (408)
Q Consensus 132 ~~~~-~g~~~~~~~g~~-~~~~l~~~i~~~ 159 (408)
.+.+ ++ ......+.. +.+.|.+|+++.
T Consensus 82 ~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 82 AIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9998 44 333356778 999999999864
No 209
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.94 E-value=6.8e-05 Score=56.65 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=69.6
Q ss_pred ccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc
Q 015368 274 HNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR 352 (408)
Q Consensus 274 ~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~ 352 (408)
+++.++...+..++.++.+|+. |+...+.+.+++++++++...+.++.+|++.. ..+++.+++.. .|.+++++.
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~I~~--~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---SSIASEFGVRG--YPTIKLLKG 81 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---HhHHhhcCCcc--ccEEEEEcC
Confidence 3444443333244556667777 88999999999999853212289999998764 47788999953 688888864
Q ss_pred CCccccCCCCCChHHHHHHHHHH
Q 015368 353 DAKKYVLNGELTLSSIKSFGEEF 375 (408)
Q Consensus 353 ~~~~y~~~~~~~~~~i~~Fi~~~ 375 (408)
+..+.+.|..+.++|.+|++++
T Consensus 82 -~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 -DLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -CCceeecCCCCHHHHHHHHHhh
Confidence 4566788989999999999876
No 210
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.93 E-value=0.00035 Score=54.85 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=80.3
Q ss_pred CcEEcChhhHH-HHHcCCCcEEEEEecC--CChh-H-HhhhHHHHHHHHHhcCC-cEEEEEeCcccHhHHHHcCCC--cC
Q 015368 57 DVVSLNGKNFS-EFMGKNRNVMVMFYAN--WCYW-S-KKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNIL--AY 128 (408)
Q Consensus 57 ~~~~l~~~~~~-~~~~~~~~~~v~f~a~--wC~~-C-~~~~p~~~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~i~--~~ 128 (408)
.+++|+.++.- ..=.+++..+|-|.-. .|.. + ......+.++|+.++++ +.|+.+|.++...+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 56777766553 3334456666666432 1322 3 35577899999999998 999999999999999999995 49
Q ss_pred cEEEEEeCCeEeEE-eeCCCCHHHHHHHHHhHhCCCc
Q 015368 129 PTLYLFVAGVRQFQ-FFGERTRDVISAWVREKMTLGT 164 (408)
Q Consensus 129 Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~~~~ 164 (408)
|++++++..+.... +.|..+.+.+.+|+++.+...+
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 99999983222333 7799999999999999986554
No 211
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.92 E-value=0.00012 Score=55.06 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=67.7
Q ss_pred cccChhHHHHHhccCCeEEEEEecCCCCcCH---HHHHHHh-ccCC-ceeEEEe--cCHhHHhhcCCCCCCCCCeEEEee
Q 015368 166 SITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHS-DVNFYQT--TSADVAEFFHIHPKSKRPALIFLH 238 (408)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~-~~~f~~~--~~~~l~~~~~i~~~~~~p~l~~~~ 238 (408)
.+.+.++++..++.+++++|.|+++||.++. +.+..++ ++.+ .+.|..+ .+.+++++|+++ +.|++++|+
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~---~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGK---CEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCC---cCcEEEEEE
Confidence 4678899999998889999999999999854 4555555 4442 3566654 456889999999 589999998
Q ss_pred cCCCcccccCCcCCHHHHHHHHhc
Q 015368 239 LEAGKATPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 239 ~~~~~~~~y~g~~~~~~i~~fi~~ 262 (408)
++. ......| .+.+.+.+||.+
T Consensus 80 ~g~-~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGE-LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCE-EEEEEec-CChHHHHHHHhh
Confidence 653 3334455 377888888854
No 212
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.92 E-value=7.9e-05 Score=59.69 Aligned_cols=98 Identities=6% Similarity=0.085 Sum_probs=74.4
Q ss_pred ccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccC
Q 015368 276 AQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARD 353 (408)
Q Consensus 276 ~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~ 353 (408)
+......+.++++ |+.+||. |......+.+++.++.++ +.|+.+|.+... ...+++.|++. ..|.+++++.+
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~-~~~~~~~~~V~--~iPt~v~~~~~ 86 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK-WLPEIDRYRVD--GIPHFVFLDRE 86 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc-cHHHHHHcCCC--CCCEEEEECCC
Confidence 3444455665555 5556776 999999999999999888 899999887643 23567899995 37899988764
Q ss_pred C-ccccCCCCCChHHHHHHHHHHhcCc
Q 015368 354 A-KKYVLNGELTLSSIKSFGEEFLEDK 379 (408)
Q Consensus 354 ~-~~y~~~~~~~~~~i~~Fi~~~~~gk 379 (408)
| ....+.|..+.+.+.++++.+++|.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4 4445778888999999999999874
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.6e-05 Score=66.56 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCceEeecccccccccc--CCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368 265 HPLVVTLTIHNAQFVFQ--DPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339 (408)
Q Consensus 265 ~p~v~~lt~~~~~~~~~--~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i 339 (408)
.|.+.+.|..||+...- +.. |+++ |..+|+. |.+..+.+.+++.+++|+ +.++.+||+.. +.+...||+
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~---p~vAaqfgi 95 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE---PMVAAQFGV 95 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc---hhHHHHhCc
Confidence 34588999999886442 222 6655 5567777 999999999999999999 99999999874 588999999
Q ss_pred CCCCCcEEEEEccCCccc-cCCCCCChHHHHHHHHHHhcC
Q 015368 340 SGNAPRVIAYSARDAKKY-VLNGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 340 ~~~~~p~i~i~~~~~~~y-~~~~~~~~~~i~~Fi~~~~~g 378 (408)
. ..|.++.+.. |+.- .+.|....+.|.+|++.+..-
T Consensus 96 q--sIPtV~af~d-GqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 96 Q--SIPTVYAFKD-GQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred C--cCCeEEEeeC-CcCccccCCCCcHHHHHHHHHHhcCh
Confidence 4 4688877764 4443 477888889999999999876
No 214
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.0002 Score=53.56 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=67.9
Q ss_pred hhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368 63 GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (408)
Q Consensus 63 ~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (408)
+...++++ ...+.++|-|-..|-+.|.++...+.++++...+-..++-||.++-+++.+-|++...|++++|-+++..
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 45666666 3567899999999999999999999999999988788889999999999999999999999999876543
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.84 E-value=0.00014 Score=64.11 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC----------------c----------------------
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA----------------Y---------------------- 114 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~----------------~---------------------- 114 (408)
.+.+++.|.-+.|++|+++.+.+..+.+. +++.+..+-. .
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 35789999999999999999998776553 2233322211 0
Q ss_pred ------------ccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368 115 ------------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (408)
Q Consensus 115 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (408)
++..+++++|++|+|++++-+ +| .+....|..+.++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 122366789999999999887 67 6677889999999988764
No 216
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.82 E-value=0.00014 Score=54.09 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=71.8
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhH---HHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP---EFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p---~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (408)
....++..+++..+..+... |.|++..|..|.+... .+-++.+.+.+.+..+.|.-..+..+..+||+..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDA-VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcE-EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 56678889999999776554 4566666666655544 5667777777778888888778899999999999999999
Q ss_pred EeCCeEeEEeeCCCCHHH
Q 015368 134 FVAGVRQFQFFGERTRDV 151 (408)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~ 151 (408)
+++|+......|.++.++
T Consensus 89 ~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 89 FRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EETTEEEEEEESSSTHHH
T ss_pred EECCEEEEEecCeecccc
Confidence 999988888888887654
No 217
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.82 E-value=0.00017 Score=48.26 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=41.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.|+.+||++|+.....+++ . ++.+-.+|++++++. .+..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 578999999999998887733 2 588888898887543 33349999999986 664
No 218
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.81 E-value=0.00017 Score=71.61 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=73.1
Q ss_pred EcChhhHHHHHcCCCcEEE-EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368 60 SLNGKNFSEFMGKNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
.|+.+..+.+..=++++-| .|.+++|++|......+++++.+.. +|..-.||..+.++++++|+|.++|++++ ||+
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~ 538 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ 538 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCE
Confidence 3444444444433456645 4689999999999999999998865 79999999999999999999999999976 664
Q ss_pred EeEEeeCCCCHHHHHHHH
Q 015368 139 RQFQFFGERTRDVISAWV 156 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i 156 (408)
. .+.|..+.+++.+||
T Consensus 539 ~--~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 Q--VYFGKKTIEEMLELI 554 (555)
T ss_pred E--EEeeCCCHHHHHHhh
Confidence 3 366988999998886
No 219
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.79 E-value=0.00019 Score=68.29 Aligned_cols=96 Identities=10% Similarity=0.170 Sum_probs=71.8
Q ss_pred CcccccChhHHHHHhc---cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCc-eeEEEe---cCH-hH-HhhcCCCCCC
Q 015368 163 GTYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHSD-VNFYQT---TSA-DV-AEFFHIHPKS 229 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~---~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~-~~f~~~---~~~-~l-~~~~~i~~~~ 229 (408)
.+..+ +.++++..+. .+++++|.|+.+||.++ .+.|.+++ ++.+. +.|+.+ .+. .+ .+.++|.
T Consensus 352 ~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~--- 427 (463)
T TIGR00424 352 NVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG--- 427 (463)
T ss_pred CeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC---
Confidence 45555 4567888875 67789999999999884 45677777 45443 667655 222 34 4689998
Q ss_pred CCCeEEEeecCCCcccccC-CcCCHHHHHHHHhc
Q 015368 230 KRPALIFLHLEAGKATPFR-HQFTRLAIANFVTH 262 (408)
Q Consensus 230 ~~p~l~~~~~~~~~~~~y~-g~~~~~~i~~fi~~ 262 (408)
++|++++|+++...+..|. |..+.++|..||+.
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 5999999998876788897 58999999999974
No 220
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.79 E-value=0.00023 Score=57.86 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.8
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 104 (408)
+.+++++.|+.++|++|+.+.|.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 357899999999999999999999998877653
No 221
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00049 Score=55.09 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=72.4
Q ss_pred ChhhHHHHHcCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc---------------------ccHh
Q 015368 62 NGKNFSEFMGKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------LEKD 118 (408)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~---------------------~~~~ 118 (408)
+++.+......+++|+++||- .|++-|-.++-.|.....+++. +..++.|..| .+..
T Consensus 19 ~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~ 98 (157)
T COG1225 19 DGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGE 98 (157)
T ss_pred CCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHH
Confidence 333333333467899999995 7899999999999999999987 8888888865 3567
Q ss_pred HHHHcCCCc------------CcEEEEEe-CCeEeEEeeC---CCCHHHHHHHHHhH
Q 015368 119 LAKEYNILA------------YPTLYLFV-AGVRQFQFFG---ERTRDVISAWVREK 159 (408)
Q Consensus 119 ~~~~~~i~~------------~Pt~~~~~-~g~~~~~~~g---~~~~~~l~~~i~~~ 159 (408)
+++.||+.+ .+++++++ +|++...+.. .-.++.+.+.+.+.
T Consensus 99 v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 99 VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 888898743 47888888 7977766643 24566777776654
No 222
>PTZ00051 thioredoxin; Provisional
Probab=97.75 E-value=0.00019 Score=53.42 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=65.2
Q ss_pred cccccChhHHHHHhccCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~ 237 (408)
+.++.+.+++...++.++.+++.|+.+||.++. +.+..+++...++.|+.+ ....+++++++. +.|++++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT---SMPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc---eeeEEEEE
Confidence 467888899999999999999999999999854 345555544445777655 446789999998 59999999
Q ss_pred ecCCCcccccCCcCCHHHHH
Q 015368 238 HLEAGKATPFRHQFTRLAIA 257 (408)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~i~ 257 (408)
+.+. ....+.|. ..++|.
T Consensus 79 ~~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred eCCe-EEEEEeCC-CHHHhh
Confidence 7553 44566664 444443
No 223
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.73 E-value=0.00013 Score=55.71 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=64.6
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccC
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL 359 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~ 359 (408)
+.|+++ ++.+|+. |....+.+.++++++++ + +.|+.+|++.. +.+++.+|+. ..|.+++++.+.....+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~---v~~~~vd~d~~---~~l~~~~~V~--~~Pt~~i~~~g~~~~~~ 95 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG---VGIATVNAGHE---RRLARKLGAH--SVPAIVGIINGQVTFYH 95 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC---ceEEEEecccc---HHHHHHcCCc--cCCEEEEEECCEEEEEe
Confidence 345555 5556776 89999999999999975 5 89999998764 4778999994 36788888644333346
Q ss_pred CCCCChHHHHHHHHH
Q 015368 360 NGELTLSSIKSFGEE 374 (408)
Q Consensus 360 ~~~~~~~~i~~Fi~~ 374 (408)
.|..+.+.|.+||++
T Consensus 96 ~G~~~~~~l~~~i~~ 110 (111)
T cd02963 96 DSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCCCHHHHHHHHhc
Confidence 788899999999986
No 224
>PLN02309 5'-adenylylsulfate reductase
Probab=97.72 E-value=0.00025 Score=67.53 Aligned_cols=96 Identities=9% Similarity=0.167 Sum_probs=72.6
Q ss_pred CcccccChhHHHHHh---ccCCeEEEEEecCCCCcC---HHHHHHHh-ccCC-ceeEEEec----CHhHHh-hcCCCCCC
Q 015368 163 GTYSITTTDEAERIL---TVESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQTT----SADVAE-FFHIHPKS 229 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~---~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~~----~~~l~~-~~~i~~~~ 229 (408)
.+..+ +.++++..+ +.+..++|.|+.+||.++ .+.|..++ ++.+ .+.|+.+. ...++. .++|.
T Consensus 346 ~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~--- 421 (457)
T PLN02309 346 NVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG--- 421 (457)
T ss_pred CcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc---
Confidence 34445 557777776 367789999999999885 45677777 4433 47777653 346675 69998
Q ss_pred CCCeEEEeecCCCcccccCC-cCCHHHHHHHHhc
Q 015368 230 KRPALIFLHLEAGKATPFRH-QFTRLAIANFVTH 262 (408)
Q Consensus 230 ~~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~~ 262 (408)
++|++++|+++...+..|.| ..+.++|..||+.
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 69999999988777889985 6999999999975
No 225
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.72 E-value=0.00033 Score=52.76 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=63.1
Q ss_pred ChhHHHHHhcc--CCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cC---HhHHhhcCCCCCCCCCeEEEe
Q 015368 169 TTDEAERILTV--ESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TS---ADVAEFFHIHPKSKRPALIFL 237 (408)
Q Consensus 169 ~~~~~~~~~~~--~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~---~~l~~~~~i~~~~~~p~l~~~ 237 (408)
|.++++..+.. ++.++|.|+++||.++. +.+..+++....+.|+.+ .+ ..+++++++. +.|++++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~---~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKII---EVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCC---cCCEEEEE
Confidence 56788888854 67899999999999854 556666633367777765 22 2688999999 59999999
Q ss_pred ecCCCcccccCCcCCHHHHHHHHh
Q 015368 238 HLEAGKATPFRHQFTRLAIANFVT 261 (408)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~i~~fi~ 261 (408)
+++. ....+.|. ...++.+-+.
T Consensus 79 ~~G~-~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 79 KDGE-KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred eCCe-EEEEEeCC-CHHHHHHHHH
Confidence 7653 45677774 5566666554
No 226
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.70 E-value=0.00046 Score=56.71 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=64.0
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCccc---------------------------------
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLE--------------------------------- 116 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~--------------------------------- 116 (408)
..+++++.|+...|++|..+.+.+.++.+.+ .+++.+..++.-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999998 66788887765100
Q ss_pred -----------------------------------HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368 117 -----------------------------------KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (408)
Q Consensus 117 -----------------------------------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (408)
...+++.||.++||+++ ||+. +.|..+.+++.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 01346679999999988 8854 5889999999999874
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.68 E-value=0.00037 Score=68.81 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=76.9
Q ss_pred EcChhhHHHHHcCCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368 60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
.|+++..+.+..=+++ -+-.|.+++|++|......+++++.... +|..-.||..+.++++.+|++.++|++++ +|+
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc
Confidence 3455544444332344 5788999999999999999999998655 89999999999999999999999999965 563
Q ss_pred EeEEeeCCCCHHHHHHHHHhHhC
Q 015368 139 RQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
..+.|..+.+++.+.+.+..+
T Consensus 179 --~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 179 --EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred --EEEecCCCHHHHHHHHhcccc
Confidence 347799999998888876543
No 228
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.67 E-value=0.0004 Score=50.30 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=53.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcCC--CcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRD 150 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (408)
++.|..+||++|.+....++++..+.. ++.+..+|.+.+. ++.+..+- .++|++++ +|+. .| ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--CHH
Confidence 677899999999999999988765543 4777788877533 46666664 78999943 6633 33 347
Q ss_pred HHHHHHHhHh
Q 015368 151 VISAWVREKM 160 (408)
Q Consensus 151 ~l~~~i~~~~ 160 (408)
+|.+++.+..
T Consensus 73 dl~~~~~~~~ 82 (86)
T TIGR02183 73 DFEQLVKENF 82 (86)
T ss_pred HHHHHHHhcc
Confidence 7888887754
No 229
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.66 E-value=0.00026 Score=51.05 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=61.6
Q ss_pred cccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecC-C
Q 015368 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE-A 241 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~-~ 241 (408)
++++.+.+++.. ++.++..+|+||.+..++.+..|..+| .++.++.|+........ ..... + +.+++|++. .
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~~-~~~~~---~-~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVTK-PERPP---G-DNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEeccccc-cccCC---C-CCeEEECCCCC
Confidence 356777788887 777888999999999999999999988 78999999887655442 22222 2 445667765 4
Q ss_pred CcccccCCcCC
Q 015368 242 GKATPFRHQFT 252 (408)
Q Consensus 242 ~~~~~y~g~~~ 252 (408)
.....|.|+++
T Consensus 75 ~~~~~y~G~~t 85 (91)
T cd03070 75 APDMVYLGSLT 85 (91)
T ss_pred CCceEEccCCC
Confidence 45588999974
No 230
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.64 E-value=0.00059 Score=49.12 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=78.1
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCC----cCc-EEEEE
Q 015368 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNIL----AYP-TLYLF 134 (408)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~----~~P-t~~~~ 134 (408)
+.++|..++...+.|+|+|..+- ..-...+..+.++|+..++.-+++-|||.+ ...+|+++.+. .-| ++..|
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 35788999988889999987765 334455668899999999999999999987 68899999998 445 35566
Q ss_pred eCCeEeEEeeCCCCHHHHHHHHH
Q 015368 135 VAGVRQFQFFGERTRDVISAWVR 157 (408)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~ 157 (408)
++|.--..|+...+...|.+|++
T Consensus 87 KdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cCCCccccccchhhHHHHHHHhh
Confidence 79988888999999999999986
No 231
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.64 E-value=0.00038 Score=49.48 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=42.8
Q ss_pred CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc---HhHHHHcCCCcCcEEEEEeCCe
Q 015368 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
+.-++.|..+||++|++....+++ . ++.+-.+|++++ ..+.+..|...+|++++ +|+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~----~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE----K--GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH----c--CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 445778999999999999888863 2 577777888766 34555678899999953 674
No 232
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.62 E-value=0.0005 Score=52.15 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=53.7
Q ss_pred hhHHHHHhc--cCCeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecC
Q 015368 170 TDEAERILT--VESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (408)
Q Consensus 170 ~~~~~~~~~--~~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~ 240 (408)
.++++..+. .+.+++|.|+++||+++. +.+.+++ ++.+.+.|+.+ .++++++++++. +.|++++|+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~---~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELY---DPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCC---CCCEEEEEECC
Confidence 456666675 466789999999999854 5677777 56666777765 677899999999 59999999976
Q ss_pred C
Q 015368 241 A 241 (408)
Q Consensus 241 ~ 241 (408)
.
T Consensus 79 ~ 79 (114)
T cd02954 79 K 79 (114)
T ss_pred E
Confidence 4
No 233
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.61 E-value=0.00051 Score=53.40 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=77.2
Q ss_pred CCCCceEeeccccccccccCCccEEEEEeeCC----CchHHHHHHHHHHHHhc-CCcceEEEEEEEcCCcccccchhhhc
Q 015368 263 TKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY----GSDKVILTFEEVAKALK-GKVNMLLHVYVEMNSEGVGRRVSQEF 337 (408)
Q Consensus 263 ~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~~----~~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~~~~~~l~~~~ 337 (408)
+-.|.+.. .++......+...++|+..+. +..+..-++.++|++|. ++ +.|+.+|.+.+ +.+...|
T Consensus 17 ~g~~~~~~---~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~---v~~akVDiD~~---~~LA~~f 87 (132)
T PRK11509 17 RGWTPVSE---SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT---WQVAIADLEQS---EAIGDRF 87 (132)
T ss_pred cCCCcccc---ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc---eEEEEEECCCC---HHHHHHc
Confidence 45555444 555555555545555555442 25566778999999998 57 99999999874 5899999
Q ss_pred cCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368 338 GVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 338 ~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g 378 (408)
|+.. .|.++++..+...-.+.|..+.+.+.+||+.+++-
T Consensus 88 gV~s--iPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 88 GVFR--FPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred CCcc--CCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 9954 78999988644444678888999999999998865
No 234
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.60 E-value=0.00049 Score=52.78 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred CcccccChhHHHHHhccC---CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCeE
Q 015368 163 GTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~---~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~l 234 (408)
.+.++++ +++...+... ..+++.|+++||.++ .+.+..++....++.|+.+... .+++++++. +.|++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~---~~Pt~ 80 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIK---VLPTL 80 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCC---cCCEE
Confidence 3456666 7777777544 788889999999874 4556666744456777765322 789999998 59999
Q ss_pred EEeecCCCcccccCC-------cCCHHHHHHHH
Q 015368 235 IFLHLEAGKATPFRH-------QFTRLAIANFV 260 (408)
Q Consensus 235 ~~~~~~~~~~~~y~g-------~~~~~~i~~fi 260 (408)
++|+.+. ....+.| +++.+.|.+|+
T Consensus 81 ~~f~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGE-LIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCE-EEEEEecHHHhCCCCCCHHHHHHHh
Confidence 9999764 2223322 24556666664
No 235
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.57 E-value=0.00022 Score=51.12 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=42.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHcCCCcCcEEEEEeCCeE
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGVR 139 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~ 139 (408)
++.|+++||++|+...+.++++.. .+.+..++.+.+. .+.+..|..++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 477999999999999999888655 4567777766542 34566788999997 456743
No 236
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.55 E-value=0.0017 Score=49.01 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=74.2
Q ss_pred eEeeccccccccccCCccEEEEEeeCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--ccccchhhhccCCCCCCc
Q 015368 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--GVGRRVSQEFGVSGNAPR 345 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--~~~~~l~~~~~i~~~~~p 345 (408)
...|+.-+|..+...-.-.++=|.---.+-+-.+.|.++|++....+.++.++.|...++ .-+.+|.+.|+++.+..|
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred eeeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 356788888888877765556676655555667889999955443334599999988766 237789999999988889
Q ss_pred EEEEEccC-Cc--cccCCCCCChHHHHHHHHHH
Q 015368 346 VIAYSARD-AK--KYVLNGELTLSSIKSFGEEF 375 (408)
Q Consensus 346 ~i~i~~~~-~~--~y~~~~~~~~~~i~~Fi~~~ 375 (408)
++.++..+ .. .|+..++++.++|.+|+.+-
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 99988852 22 33448899999999999863
No 237
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.52 E-value=0.0012 Score=52.18 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=59.0
Q ss_pred cccccChhHHHHHhc--cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368 164 TYSITTTDEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l 234 (408)
+..+.|.+++++.+. .+..+++-|+++||+++ .+.+.+++ ++.+.+.|+.+ ..+++++.|++.. .|++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~---~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD---PCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccC---CCcE
Confidence 456788999998885 56788999999999984 45677777 45555666655 6678999999983 5666
Q ss_pred E-EeecCCCcccccCC
Q 015368 235 I-FLHLEAGKATPFRH 249 (408)
Q Consensus 235 ~-~~~~~~~~~~~y~g 249 (408)
+ +|+++....-..+|
T Consensus 82 ~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 82 MFFFRNKHIMIDLGTG 97 (142)
T ss_pred EEEEECCeEEEEEecc
Confidence 6 77765323333345
No 238
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.51 E-value=0.0031 Score=48.24 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=63.2
Q ss_pred ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE-EEEEeCCe
Q 015368 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT-LYLFVAGV 138 (408)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt-~~~~~~g~ 138 (408)
++...++++ .+.+.+++-|-.+|-+.|.++...+.++++..+.-..++.||.++-+++.+.|.+. -|. +++|-+++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 355677666 56789999999999999999999999999999988899999999999999999999 665 44444775
Q ss_pred Ee
Q 015368 139 RQ 140 (408)
Q Consensus 139 ~~ 140 (408)
.+
T Consensus 86 hm 87 (133)
T PF02966_consen 86 HM 87 (133)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 239
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.51 E-value=0.0009 Score=49.63 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=61.7
Q ss_pred ChhHHHHHhccC--CeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeec
Q 015368 169 TTDEAERILTVE--SKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (408)
Q Consensus 169 ~~~~~~~~~~~~--~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~ 239 (408)
|.++++..+... ..+++.|+.+||.++. +.+..++ ++...+.++.+ ...++++++++. +.|++++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~---~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT---AVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc---cccEEEEEEC
Confidence 356777777665 8899999999998744 4455555 44667777765 455789999998 5999999975
Q ss_pred CCCcccccCCcCCHHHHHHHH
Q 015368 240 EAGKATPFRHQFTRLAIANFV 260 (408)
Q Consensus 240 ~~~~~~~y~g~~~~~~i~~fi 260 (408)
+ .....+.|. +.++|.++|
T Consensus 78 g-~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 78 G-TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred C-EEEEEEeCC-CHHHHHHhh
Confidence 4 234455564 567777665
No 240
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.49 E-value=0.00093 Score=55.48 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=69.9
Q ss_pred CCcccccChhHHHHHhccC---CeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCe
Q 015368 162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPA 233 (408)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~---~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~ 233 (408)
..+..|++.+++...+... ..++|.|+.+||.++. +.+..+|.....+.|+.+... .++..|++. +.|+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~---~vPT 138 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTD---ALPA 138 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCC---CCCE
Confidence 4466777767777776543 3788889999999854 567777755567899887444 588999998 5999
Q ss_pred EEEeecCCCc--c---cc-cCCcCCHHHHHHHHhcC
Q 015368 234 LIFLHLEAGK--A---TP-FRHQFTRLAIANFVTHT 263 (408)
Q Consensus 234 l~~~~~~~~~--~---~~-y~g~~~~~~i~~fi~~~ 263 (408)
+++|+.+... . .. ...+++.++|..|+..+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999976411 1 11 12357788888888653
No 241
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.47 E-value=0.00085 Score=48.84 Aligned_cols=86 Identities=15% Similarity=0.256 Sum_probs=63.1
Q ss_pred HHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCccc
Q 015368 172 EAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKAT 245 (408)
Q Consensus 172 ~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~ 245 (408)
+++..+....++++.|+.++|..+.. .+..+++..+++.|+.+ .+..+++.+++. +.|++++++.+. ...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~---~~P~~~~~~~g~-~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVR---SIPTFLFFKNGK-EVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcc---cccEEEEEECCE-EEE
Confidence 35556666688899999999987544 34444434667777765 456799999998 599999998653 456
Q ss_pred ccCCcCCHHHHHHHHh
Q 015368 246 PFRHQFTRLAIANFVT 261 (408)
Q Consensus 246 ~y~g~~~~~~i~~fi~ 261 (408)
.+.|..+.+.|.+||.
T Consensus 78 ~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 RVVGADPKEELEEFLE 93 (93)
T ss_pred EEecCCCHHHHHHHhC
Confidence 7778777799998873
No 242
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.45 E-value=0.00086 Score=46.68 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=47.3
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc---CCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (408)
..|..++|++|++....+++ .++.+-.+|++++++....+ |..++|++++ +|. .+.|..+.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHHh
Confidence 56888999999999888864 26888889998877655544 8888999744 442 2345566666654
No 243
>PTZ00062 glutaredoxin; Provisional
Probab=97.43 E-value=0.0023 Score=54.19 Aligned_cols=162 Identities=11% Similarity=0.069 Sum_probs=95.7
Q ss_pred ccChhHHHHHhccC-CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCC
Q 015368 167 ITTTDEAERILTVE-SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAG 242 (408)
Q Consensus 167 i~~~~~~~~~~~~~-~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~ 242 (408)
..+.+++.+.++++ ...++.|.++||.++ .+.+..+++....+.|+.+.-. ++|. +.|++++|+.+.
T Consensus 3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~---~vPtfv~~~~g~- 73 (204)
T PTZ00062 3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANN---EYGVFEFYQNSQ- 73 (204)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCcc---cceEEEEEECCE-
Confidence 45778888888765 667777779999884 4456677765678999988644 8998 599999999764
Q ss_pred cccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEee------CCC-chHHHHHHHHHHHHhcCCcc
Q 015368 243 KATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAP------AYG-SDKVILTFEEVAKALKGKVN 315 (408)
Q Consensus 243 ~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~------~~~-~~~~~~~~~~vA~~~~~~~~ 315 (408)
....+.|- +...+..++..+.-+.-..-..+....+.++. |+ ++|.. .+. +......|++ . .
T Consensus 74 ~i~r~~G~-~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~-~V-vvf~Kg~~~~p~C~~C~~~k~~L~~----~--~-- 142 (204)
T PTZ00062 74 LINSLEGC-NTSTLVSFIRGWAQKGSSEDTVEKIERLIRNH-KI-LLFMKGSKTFPFCRFSNAVVNMLNS----S--G-- 142 (204)
T ss_pred EEeeeeCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CE-EEEEccCCCCCCChhHHHHHHHHHH----c--C--
Confidence 44566664 56777777776544321111112233343333 44 44544 233 4455444442 2 2
Q ss_pred eEEEEEEEcCCc-ccccchhhhccCCCCCCcEEEEEc
Q 015368 316 MLLHVYVEMNSE-GVGRRVSQEFGVSGNAPRVIAYSA 351 (408)
Q Consensus 316 ~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~p~i~i~~ 351 (408)
+.|...|.... +....+.+.-|- ...|.+.|-.
T Consensus 143 -i~y~~~DI~~d~~~~~~l~~~sg~--~TvPqVfI~G 176 (204)
T PTZ00062 143 -VKYETYNIFEDPDLREELKVYSNW--PTYPQLYVNG 176 (204)
T ss_pred -CCEEEEEcCCCHHHHHHHHHHhCC--CCCCeEEECC
Confidence 66677777644 212233222222 2367888743
No 244
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.42 E-value=0.0011 Score=55.46 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEE
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~ 109 (408)
.+++.++.|+...||+|+.+.+.+.++.+++.+++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 56899999999999999999999999999886655554
No 245
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.41 E-value=0.00094 Score=49.62 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=64.5
Q ss_pred cCCccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCcccc
Q 015368 281 QDPRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV 358 (408)
Q Consensus 281 ~~~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~ 358 (408)
..+.+++++|. +++. |....+.++++++++.++ +.|..+|.+.. +.+.+.+++. ..|.+++++.+.....
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~---~~l~~~~~v~--~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED---QEIAEAAGIM--GTPTVQFFKDKELVKE 82 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC---HHHHHHCCCe--eccEEEEEECCeEEEE
Confidence 34445555544 6666 889999999999999888 99999998763 4778899994 4688888875444555
Q ss_pred CCCCCChHHHHHHHH
Q 015368 359 LNGELTLSSIKSFGE 373 (408)
Q Consensus 359 ~~~~~~~~~i~~Fi~ 373 (408)
+.|..+.+++.+|++
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 788888888888863
No 246
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.36 E-value=0.0019 Score=54.41 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCcccccChhHHHHHhccC--CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEE
Q 015368 162 LGTYSITTTDEAERILTVE--SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (408)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~--~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~ 236 (408)
..+..++..+........+ ..++|-|+.+||.++ .+.+..+|.....+.|..+........|++. +.|++++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~---~lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDK---NLPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCC---CCCEEEE
Confidence 4556664433333444443 468888999999884 4567778854567899988766777899998 5999999
Q ss_pred eecCCCc-----ccccCC-cCCHHHHHHHHhc
Q 015368 237 LHLEAGK-----ATPFRH-QFTRLAIANFVTH 262 (408)
Q Consensus 237 ~~~~~~~-----~~~y~g-~~~~~~i~~fi~~ 262 (408)
|+.+... ...+.| +++.++|..++..
T Consensus 159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9976411 112223 4777888877754
No 247
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.34 E-value=0.0014 Score=50.13 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=66.2
Q ss_pred CCccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC--ccc
Q 015368 282 DPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA--KKY 357 (408)
Q Consensus 282 ~~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~--~~y 357 (408)
++.+++++| .+||. |+...+.+.+++.++ ++ +.|..+|.+. .+.+...|++.. .|.+++++.++ ...
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~---~~~l~~~~~v~~--vPt~~i~~~g~~~~~~ 91 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDE---DKEKAEKYGVER--VPTTIFLQDGGKDGGI 91 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCc---CHHHHHHcCCCc--CCEEEEEeCCeecceE
Confidence 444555554 46775 999999999999987 67 9999999875 458889999954 68998887522 223
Q ss_pred cCCCCCChHHHHHHHHHHhc
Q 015368 358 VLNGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 358 ~~~~~~~~~~i~~Fi~~~~~ 377 (408)
.+.|..+..++.+||+.+++
T Consensus 92 ~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 92 RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEecCchHHHHHHHHHHHh
Confidence 56787788999999998864
No 248
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.34 E-value=0.00073 Score=48.24 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC--CeEeEEeeCCCCHHHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA--GVRQFQFFGERTRDVISA 154 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~~ 154 (408)
++.|..+.|+-|..+...+.++.... .+.+-.||+++++++..+|+. .+|.+.+-.. ........+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67899999999999999888866554 599999999999999999996 5999655441 112355678899999999
Q ss_pred HHH
Q 015368 155 WVR 157 (408)
Q Consensus 155 ~i~ 157 (408)
||+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 249
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.30 E-value=0.0025 Score=62.91 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=75.8
Q ss_pred EcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368 60 SLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 60 ~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
.|+++..+.+.. .++.-+-.|..+.|++|......+++++.... +|..-.+|..+.++++.+|++.++|++++ +|+
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence 455555554443 23445788999999999999999999988866 79999999999999999999999999976 553
Q ss_pred EeEEeeCCCCHHHHHHHHHhHh
Q 015368 139 RQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
..+.|..+.+++.+.+.+..
T Consensus 180 --~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred --EEEecCCCHHHHHHHHhhcc
Confidence 34779899988877776553
No 250
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.29 E-value=0.00086 Score=46.36 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=40.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCeE
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVR 139 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~ 139 (408)
++.|.++||++|+...+.+.+.. +.+..+|++.+++. .+..+...+|+++ .+|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 56789999999999998887653 67778888776543 3445777888774 46744
No 251
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.27 E-value=0.0062 Score=45.64 Aligned_cols=91 Identities=9% Similarity=0.134 Sum_probs=69.5
Q ss_pred ChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC-CeE
Q 015368 62 NGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA-GVR 139 (408)
Q Consensus 62 ~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~-g~~ 139 (408)
+.++++.++. ++..++|-|+..--. .....|.++|+.+++++.|+... +.++.+++++. .|+++++++ ...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence 4566888887 778888888776434 45677999999998889997665 55778888876 688999974 434
Q ss_pred eEEe-eCCCCHHHHHHHHHhH
Q 015368 140 QFQF-FGERTRDVISAWVREK 159 (408)
Q Consensus 140 ~~~~-~g~~~~~~l~~~i~~~ 159 (408)
...| .|..+.+.|.+||...
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHh
Confidence 4568 7888999999999754
No 252
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.24 E-value=0.0056 Score=43.59 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=51.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH---HHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (408)
+..|..+||++|+.....+++ .++.|-.+|++++++.. +..|...+|++++ +|. ..+..+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence 567889999999998877744 26888899998877643 3457788999954 442 23456778887
Q ss_pred HHHHhH
Q 015368 154 AWVREK 159 (408)
Q Consensus 154 ~~i~~~ 159 (408)
+++...
T Consensus 71 ~~~~~~ 76 (81)
T PRK10329 71 RLHPAP 76 (81)
T ss_pred HHHHhh
Confidence 776544
No 253
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.21 E-value=0.0012 Score=47.51 Aligned_cols=96 Identities=16% Similarity=0.294 Sum_probs=68.3
Q ss_pred cccccccCCccEEEEEeeCC-CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE-EEEEcc
Q 015368 275 NAQFVFQDPRKQLWLFAPAY-GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV-IAYSAR 352 (408)
Q Consensus 275 ~~~~~~~~~~~~~i~f~~~~-~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~-i~i~~~ 352 (408)
.|..++....-++++|.... +-...+..++++|...+|. =..+|+||.+.+ .+.+|+.+.++++..|. +.+..-
T Consensus 11 dfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 11 DFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQ---GTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred HHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCc---eeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcc
Confidence 45566666556667777653 3567788999999999998 899999999876 77999999998544333 222222
Q ss_pred -CCcccc-CCCCCChHHHHHHHHH
Q 015368 353 -DAKKYV-LNGELTLSSIKSFGEE 374 (408)
Q Consensus 353 -~~~~y~-~~~~~~~~~i~~Fi~~ 374 (408)
+|.+=. |+-.++...+..|+.|
T Consensus 87 KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCccccccchhhHHHHHHHhhC
Confidence 333322 5667888899999875
No 254
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.15 E-value=0.002 Score=45.16 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=39.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHH----HcCCC-cCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNIL-AYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~-~~Pt~~~~~~g~ 138 (408)
++.|..+||++|......+++. ++.+-.+|++.+++..+ ..+.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5678999999999988887652 57788888887655433 35666 899773 4663
No 255
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.15 E-value=0.0017 Score=49.83 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=61.1
Q ss_pred eEeeccccccccccCCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368 268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 344 (408)
+.+++.+++........ ++++ ++.+|+. |......|+++|.++++..+.+.|+.+|++.+. ...+++.+++. ..
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~--~~ 79 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVT--GY 79 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCC--CC
Confidence 56788888887766554 5555 4556776 889999999999988643223899999986544 45778899994 46
Q ss_pred cEEEEEccC
Q 015368 345 RVIAYSARD 353 (408)
Q Consensus 345 p~i~i~~~~ 353 (408)
|.++++..+
T Consensus 80 Pt~~lf~~~ 88 (114)
T cd02992 80 PTLRYFPPF 88 (114)
T ss_pred CEEEEECCC
Confidence 888888763
No 256
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.14 E-value=0.0054 Score=42.60 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=45.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh---HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (408)
++.|..+||+.|.+....+++ . ++.+..+|++++.. +.+..|...+|.+ +-+|+. .| ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~----ig--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGEL----IG--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEE----Ee--CHHHHH
Confidence 577899999999999877764 2 57777778776543 3344588899997 446743 23 356676
Q ss_pred HHH
Q 015368 154 AWV 156 (408)
Q Consensus 154 ~~i 156 (408)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 257
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.13 E-value=0.0046 Score=44.11 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=60.4
Q ss_pred EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCCh
Q 015368 287 LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTL 365 (408)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~ 365 (408)
.+++.+++. |+.....+.+++.+++.+ +.+..+|.+.. +.+.+.+|+.. .|.+++ + ++ ..+.|..+.
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~~--vPt~~~-~--g~-~~~~G~~~~ 71 (82)
T TIGR00411 4 ELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN---PQKAMEYGIMA--VPAIVI-N--GD-VEFIGAPTK 71 (82)
T ss_pred EEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC---HHHHHHcCCcc--CCEEEE-C--CE-EEEecCCCH
Confidence 455667776 999999999999999888 99999998754 46778899854 688876 3 33 356787889
Q ss_pred HHHHHHHHHH
Q 015368 366 SSIKSFGEEF 375 (408)
Q Consensus 366 ~~i~~Fi~~~ 375 (408)
+++.++++..
T Consensus 72 ~~l~~~l~~~ 81 (82)
T TIGR00411 72 EELVEAIKKR 81 (82)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 258
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.11 E-value=0.0015 Score=46.39 Aligned_cols=54 Identities=9% Similarity=0.280 Sum_probs=39.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.|+.+||++|.+....+++. ++.+-.+|++.+++. .+..|..++|++ +-+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 3578899999999998888752 466777777766544 334578889997 34664
No 259
>PHA03050 glutaredoxin; Provisional
Probab=97.10 E-value=0.0019 Score=48.77 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=42.4
Q ss_pred HHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc---c----HhHHHHcCCCcCcEEEEEeCCeE
Q 015368 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---E----KDLAKEYNILAYPTLYLFVAGVR 139 (408)
Q Consensus 67 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---~----~~~~~~~~i~~~Pt~~~~~~g~~ 139 (408)
++.+.+++ ++.|..+|||+|+.....+++..-... .+-.+|+++ . ..+.+.-|.+++|+++ -+|+.
T Consensus 7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~ 79 (108)
T PHA03050 7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTS 79 (108)
T ss_pred HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEE
Confidence 44555543 667899999999998888776542211 344555554 2 2355667888999983 35643
No 260
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.09 E-value=0.0036 Score=53.72 Aligned_cols=40 Identities=10% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEe
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVD 112 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~ 112 (408)
+++.+|.|+.-.|+||..+.|.+ ..+.+.+.+++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 46789999999999999999876 77888887766655443
No 261
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.06 E-value=0.0093 Score=44.85 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=67.6
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC-----
Q 015368 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA----- 136 (408)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~----- 136 (408)
+.++++..+...++++|-|+..--. .....|.++|+.+++++.|+... +..+.+++++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 3456777777788888888876433 46778999999998889997665 4577889988 688888831
Q ss_pred --CeEeEEeeCCCCHHHHHHHHHhH
Q 015368 137 --GVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 137 --g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
......|.|..+.+.|.+||...
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 11234689999999999999764
No 262
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.04 E-value=0.0031 Score=43.95 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.|..+||++|++....+++ .++.+-.+|++++++ +.+..+-..+|++ |-+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 567899999999998887775 257788888887664 4555677888988 33563
No 263
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.03 E-value=0.0087 Score=51.16 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=52.1
Q ss_pred cCCCCCCCCccCCCcEEcChhh---HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368 44 LNNNHTWPLLYAKDVVSLNGKN---FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113 (408)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~ 113 (408)
...|..+| +..+..+++++ +-+..+.++|++|+|-+-.||+-..-.+.|++++++|.+.+.|..|-+
T Consensus 73 a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 73 AKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred eeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 34444444 45888898877 335557899999999999999999999999999999998555555443
No 264
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.02 E-value=0.0018 Score=48.12 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh-------HHHHcCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-------LAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~-------~~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.|..+|||+|++....+.+. ++.+..+|++++++ +.+..|...+|++ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 5568899999999988766553 35555666665432 3344577899997 44663
No 265
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.01 E-value=0.12 Score=51.27 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=114.3
Q ss_pred CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE-eEEeeCCCCHHHH
Q 015368 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRDVI 152 (408)
Q Consensus 74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~~~~l 152 (408)
+++-+.++.+.|..|.++...++++++.- +++.+-..+.. ...|++.+.++|+. -.+|.|-..-.++
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 86 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEF 86 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence 44544444558999999999888888765 35665432211 23799999887643 4789998888888
Q ss_pred HHHHHhHh--CCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHHHHH---HhccCCceeEEEe---cCHhHHhhc
Q 015368 153 SAWVREKM--TLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQT---TSADVAEFF 223 (408)
Q Consensus 153 ~~~i~~~~--~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~---~a~~~~~~~f~~~---~~~~l~~~~ 223 (408)
..||.-.+ +.+-..+ +.+..+.+..- .+.-+..|..+.|..+...... ++....++.+-.+ ..++++++|
T Consensus 87 ~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 87 TSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence 88887664 2333444 55555555543 4555777899999987765443 4444456655443 667899999
Q ss_pred CCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (408)
Q Consensus 224 ~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (408)
++. +.|++++ + ....+.|..+.+++.+.+...
T Consensus 166 ~v~---~VP~~~i-~----~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 166 NIM---AVPTVFL-N----GEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCc---ccCEEEE-C----CcEEEecCCCHHHHHHHHhcc
Confidence 998 5899975 2 124577888888888877653
No 266
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.98 E-value=0.0072 Score=49.18 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=33.9
Q ss_pred cCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcC-Cc-EEEEEeCcc
Q 015368 71 GKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKG-EA-DLVMVDAYL 115 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~v-~~~~v~~~~ 115 (408)
.++..+++.|.+.||+.|..+ .+.|.+.++++.. ++ .++.|.++.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 333445555567999999999 9999999999875 66 477777653
No 267
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.92 E-value=0.003 Score=50.95 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred ceEeeccccccccccC--CccE-EEEEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCC
Q 015368 267 LVVTLTIHNAQFVFQD--PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSG 341 (408)
Q Consensus 267 ~v~~lt~~~~~~~~~~--~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~ 341 (408)
.+.+++.+++...... +.++ +.++.+|+. |+...+.+.++|+++.+ + +.|+.+|++.. +.+++.+++..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~---v~f~~VDvd~~---~~la~~~~V~~ 102 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN---LKFGKIDIGRF---PNVAEKFRVST 102 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC---eEEEEEECCCC---HHHHHHcCcee
Confidence 4566777777765532 2244 445667776 89999999999999974 5 99999998874 47889999954
Q ss_pred ----CCCcEEEEEcc
Q 015368 342 ----NAPRVIAYSAR 352 (408)
Q Consensus 342 ----~~~p~i~i~~~ 352 (408)
...|.++++..
T Consensus 103 ~~~v~~~PT~ilf~~ 117 (152)
T cd02962 103 SPLSKQLPTIILFQG 117 (152)
T ss_pred cCCcCCCCEEEEEEC
Confidence 23678887775
No 268
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.92 E-value=0.0031 Score=46.45 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=44.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--cc------------------------------cHhHHHHcC
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YL------------------------------EKDLAKEYN 124 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--~~------------------------------~~~~~~~~~ 124 (408)
+..|+.+.|++|..+.+.+.++.....+++.+..+.+ .. +...++..|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999866666555554433 21 123567789
Q ss_pred CCcCcEEEEEe
Q 015368 125 ILAYPTLYLFV 135 (408)
Q Consensus 125 i~~~Pt~~~~~ 135 (408)
+.|+|++++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998765
No 269
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.90 E-value=0.0065 Score=47.45 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=64.0
Q ss_pred hhHHHHHhccC-CeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEe---c-------------CHhHHhhcCC
Q 015368 170 TDEAERILTVE-SKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---T-------------SADVAEFFHI 225 (408)
Q Consensus 170 ~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~-------------~~~l~~~~~i 225 (408)
.++++..++.. ++++|.|+++||.++...-. .+. .+..++.+..+ . ...++.++++
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 46677788888 89999999999998655432 222 22344544433 1 2578899999
Q ss_pred CCCCCCCeEEEeecC-CCcccccCCcCCHHHHHHHHhc
Q 015368 226 HPKSKRPALIFLHLE-AGKATPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 226 ~~~~~~p~l~~~~~~-~~~~~~y~g~~~~~~i~~fi~~ 262 (408)
. +.|+++++..+ +.....+.|..+.+.+..+++.
T Consensus 83 ~---~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 83 R---FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred c---cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 8 69999999986 4556678888888888888764
No 270
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.89 E-value=0.0098 Score=46.17 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=60.3
Q ss_pred ChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe-cC-------------HhHHhhcCCCC-CCC
Q 015368 169 TTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT-TS-------------ADVAEFFHIHP-KSK 230 (408)
Q Consensus 169 ~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~-~~-------------~~l~~~~~i~~-~~~ 230 (408)
+.+++...+++++..++.|+.+||.++ .+.+..+++- .+..++.+ .+ .++.+.+++.. -.+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 667888888888888999999999874 4455666533 33444433 11 14556666542 125
Q ss_pred CCeEEEeecCCCcccccCC-cCCHHHHHHHHh
Q 015368 231 RPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (408)
Q Consensus 231 ~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~ 261 (408)
.|++++|+++... -...| ..+.++|.+|+.
T Consensus 91 ~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQV-SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence 8999999987533 34456 456799998874
No 271
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.014 Score=43.86 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=56.4
Q ss_pred cCCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEe-c--CHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCC
Q 015368 179 VESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT-T--SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFT 252 (408)
Q Consensus 179 ~~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~-~--~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~ 252 (408)
.+..+++.|+++||++ ..+.+.+++.-..++.|..+ . +.++++.+++. ..|++++|+.+. ....+-|- +
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~---~~PTf~f~k~g~-~~~~~vGa-~ 94 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVK---AMPTFVFYKGGE-EVDEVVGA-N 94 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCce---EeeEEEEEECCE-EEEEEecC-C
Confidence 3577888899999998 56678888854444888764 3 47899999999 589999998765 34444443 3
Q ss_pred HHHHHHHHhc
Q 015368 253 RLAIANFVTH 262 (408)
Q Consensus 253 ~~~i~~fi~~ 262 (408)
...+.+.+..
T Consensus 95 ~~~l~~~i~~ 104 (106)
T KOG0907|consen 95 KAELEKKIAK 104 (106)
T ss_pred HHHHHHHHHh
Confidence 3466665544
No 272
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.64 E-value=0.047 Score=46.68 Aligned_cols=104 Identities=21% Similarity=0.274 Sum_probs=72.9
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhc-C---CcEEEEEeCccc---------------
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK-G---EADLVMVDAYLE--------------- 116 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~-~---~v~~~~v~~~~~--------------- 116 (408)
.+.+-+++.+.....++++++|.|-=+.|+ -|-.+...+..+.+++. . ++.++-|.+|.+
T Consensus 51 ~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~ 130 (207)
T COG1999 51 ELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNF 130 (207)
T ss_pred eeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccC
Confidence 344445566655555899999999989997 89999998888888876 3 555555555432
Q ss_pred --------------HhHHHHcCCCc---------------CcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 117 --------------KDLAKEYNILA---------------YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 117 --------------~~~~~~~~i~~---------------~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
.+++++|++.. ...+++++ +|+....|.+....+.+.+.+++.+
T Consensus 131 ~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 23556666552 23456666 8988888887777888888887665
No 273
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0079 Score=42.72 Aligned_cols=51 Identities=12% Similarity=0.260 Sum_probs=36.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHc-CCCcCcEEEE
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEY-NILAYPTLYL 133 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~-~i~~~Pt~~~ 133 (408)
++.|..+|||+|++....+.+ .++.+..++.+.+. +..++- |.+++|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 566888999999998877772 25777777766554 333444 7899999865
No 274
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.57 E-value=0.017 Score=42.74 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=42.5
Q ss_pred HHHHHcCCCcEEEEEe----cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCC
Q 015368 66 FSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAG 137 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~----a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g 137 (408)
.+.++.++ +++|+-. +||||+|++....+.+. ++.+..+|++++++. .+..|...+|.++ -+|
T Consensus 5 v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g 75 (97)
T TIGR00365 5 IKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKG 75 (97)
T ss_pred HHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECC
Confidence 44555554 4555443 38999999988777663 467778888766543 3445777899884 456
Q ss_pred e
Q 015368 138 V 138 (408)
Q Consensus 138 ~ 138 (408)
+
T Consensus 76 ~ 76 (97)
T TIGR00365 76 E 76 (97)
T ss_pred E
Confidence 3
No 275
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.56 E-value=0.0084 Score=49.90 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=24.5
Q ss_pred EEecCCChhHHhhhHHHHHHHHHhcCCcEEE
Q 015368 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (408)
Q Consensus 79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~ 109 (408)
+|..|.|++|-...|.+.++..+++..+.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence 5899999999999999999999998855444
No 276
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.055 Score=42.71 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=71.8
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-----------HhHHH-Hc
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------KDLAK-EY 123 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-----------~~~~~-~~ 123 (408)
.+..++++.+...--++|+++|-=.|+-|+.-- ....++.++++|++ ++.+...-|..- .++|+ .|
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y 87 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY 87 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence 455666666665456889999999999999755 35678888999987 888888888532 23443 34
Q ss_pred CCC-----------------------cCc------------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 124 NIL-----------------------AYP------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 124 ~i~-----------------------~~P------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
||+ ..| +=++++ +|+++.||.-..+++++...|++.+
T Consensus 88 gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 88 GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 432 011 344555 8888888888888888887777655
No 277
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.46 E-value=0.49 Score=46.81 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=112.2
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe-EeEEeeCCCCHHH
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV 151 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~ 151 (408)
+.+.++.|.. .|..|.++...++++++.- +++.+..-+.+. ...|++.+..+|+ .-.+|.|-..-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 3344555555 7999999988888888764 466665443222 2469998887764 3478999888888
Q ss_pred HHHHHHhHh--CCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHHHHH---HhccCCceeEEE---ecCHhHHhh
Q 015368 152 ISAWVREKM--TLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQ---TTSADVAEF 222 (408)
Q Consensus 152 l~~~i~~~~--~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~---~a~~~~~~~f~~---~~~~~l~~~ 222 (408)
+..||.-.+ +.+-..+ +.+..+.+..- .+.-+..|..+.|..+...... ++....++..-. ...++++++
T Consensus 87 f~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence 888887664 2333445 55555555543 4555777889999987765443 343445565443 366789999
Q ss_pred cCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 223 ~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (408)
|++. +.|++++- ....+.|..+.+++.+-+..
T Consensus 166 ~~v~---~VP~~~i~-----~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 166 LGIQ---GVPAVFLN-----GEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred cCCc---ccCEEEEC-----CcEEEecCCCHHHHHHHHhh
Confidence 9998 58999852 12457788777777666643
No 278
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.38 E-value=0.024 Score=42.86 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=50.7
Q ss_pred hHHHHHhc--cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368 171 DEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (408)
Q Consensus 171 ~~~~~~~~--~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~ 241 (408)
+++++.+. .++.++|-|+++||.++ .+.+.++| ++...+.|+.+ ..+++++.|++. ..|+.++|+++.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~---amPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDIS---YIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCce---eCcEEEEEECCc
Confidence 45555554 47889999999999984 45677777 44433777765 667899999998 379999998764
No 279
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.36 E-value=0.014 Score=44.79 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=59.5
Q ss_pred CccEEEEEee--------CCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----cccchhhhccCCCCCCcEEEE
Q 015368 283 PRKQLWLFAP--------AYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----VGRRVSQEFGVSGNAPRVIAY 349 (408)
Q Consensus 283 ~~~~~i~f~~--------~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----~~~~l~~~~~i~~~~~p~i~i 349 (408)
+.|+++.|.. |+. |......+++++.++.++ +.|+.+|.++.. -+..+...+++. ...|.+++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~ 96 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLR 96 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEE
Confidence 3466665554 776 899999999999999977 999999986521 034677888885 45889998
Q ss_pred EccCCccccCCCCCChHHHHHHH
Q 015368 350 SARDAKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 350 ~~~~~~~y~~~~~~~~~~i~~Fi 372 (408)
++. +.+..=..=++.+.+..|+
T Consensus 97 ~~~-~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 97 WKT-PQRLVEDECLQADLVEMFF 118 (119)
T ss_pred EcC-CceecchhhcCHHHHHHhh
Confidence 864 4444323345666676665
No 280
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.25 E-value=0.0073 Score=53.23 Aligned_cols=92 Identities=21% Similarity=0.405 Sum_probs=72.6
Q ss_pred HHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe-CcccHhHHHHcCCCcCcEEEEEeCCeEeEEee
Q 015368 68 EFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (408)
Q Consensus 68 ~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 144 (408)
..+.. ..++-+.||++||+..+...|+++-....+.. +....|+ ....+.+..++++.+.|++.+.... -..+|.
T Consensus 69 ~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~ 146 (319)
T KOG2640|consen 69 DAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYR 146 (319)
T ss_pred HhhccccCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-cchhhc
Confidence 34444 56899999999999999999999998888862 3333332 2233567889999999999888865 678999
Q ss_pred CCCCHHHHHHHHHhHhC
Q 015368 145 GERTRDVISAWVREKMT 161 (408)
Q Consensus 145 g~~~~~~l~~~i~~~~~ 161 (408)
|.++...|.+|..+.++
T Consensus 147 ~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 147 GERDLASLVNFYTEITP 163 (319)
T ss_pred ccccHHHHHHHHHhhcc
Confidence 99999999999988875
No 281
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.20 E-value=0.032 Score=46.33 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=42.6
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC---CcEEEEEeCcc
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG---EADLVMVDAYL 115 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~ 115 (408)
.+.+-+++.+......+|+++|.|.=+.|+ .|-.....+.++.+.++. ++.++.|.+|.
T Consensus 36 ~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 36 TLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred EEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 444555555554444789999999999995 899888888888777653 67888887764
No 282
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.11 E-value=0.051 Score=44.70 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368 55 AKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (408)
Q Consensus 55 ~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (408)
...|..+++.+|.+-+ .++-.|+|..|...-+-|.-....++.++..|. .++|+++-.... ...|-=...||+
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl 165 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTL 165 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeE
Confidence 3577888898887544 345578999999999999999999999999998 688887753321 122444568999
Q ss_pred EEEeCCeEeEEeeC------C-CCHHHHHHHHHhHhCCCcccc
Q 015368 132 YLFVAGVRQFQFFG------E-RTRDVISAWVREKMTLGTYSI 167 (408)
Q Consensus 132 ~~~~~g~~~~~~~g------~-~~~~~l~~~i~~~~~~~~~~i 167 (408)
++|..|.+...+.| . .+.+++..++- ..++.++..
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~-qaga~l~d~ 207 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV-QAGAALTDG 207 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHH-hcccccccc
Confidence 99999976666654 2 34566655554 333444443
No 283
>PRK10638 glutaredoxin 3; Provisional
Probab=96.08 E-value=0.025 Score=40.53 Aligned_cols=54 Identities=6% Similarity=0.167 Sum_probs=39.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.|..+||++|++....+++. ++.+..+|++++++ +.+..+...+|+++ .+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5577889999999988877752 56777788876653 34455778899873 3673
No 284
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.044 Score=46.85 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=70.7
Q ss_pred CcccccChhHHHHHhcc--CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368 163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l 234 (408)
++..+++..+++.-+.. .+.++|-|+..||+++ .+.|.+++.......|..+ ..+..+.-+|++. .|+.
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~a---mPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNA---MPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCccc---CceE
Confidence 45677888888777754 4588889999999994 5678888855566667665 4556778889984 7999
Q ss_pred EEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368 235 IFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (408)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 264 (408)
++|+++. +...++|- +...|.+-+.++.
T Consensus 79 iff~ng~-kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 79 IFFRNGV-KIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred EEEecCe-EeeeecCC-CHHHHHHHHHHHh
Confidence 9999864 66777776 5566666665543
No 285
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.96 E-value=0.028 Score=40.96 Aligned_cols=61 Identities=18% Similarity=0.363 Sum_probs=40.3
Q ss_pred HHcCCCcEEEEEec----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCe
Q 015368 69 FMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 69 ~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~ 138 (408)
.+++ ++++|.-.. |||++|++....+++. ++.+..+|+++++++ .+..|-..+|++ |-+|+
T Consensus 4 ~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 4 LIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred hhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 3434 455554332 7999999988777664 367777787766544 344577889997 34674
No 286
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.82 E-value=0.063 Score=53.52 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=67.8
Q ss_pred cccccChhHHHHHhc----cCCeEEEEEecCCCCcCHHHHH------HHhccCCceeEEEe--c-----CHhHHhhcCCC
Q 015368 164 TYSITTTDEAERILT----VESKLVLGFLHDLEGMESEELA------AASKLHSDVNFYQT--T-----SADVAEFFHIH 226 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~----~~~~~vi~f~~~~~~~~~~~~~------~~a~~~~~~~f~~~--~-----~~~l~~~~~i~ 226 (408)
...+.+.+++++.++ .+++++|.|+.+||.++...-. +..+...++.+..+ + +.++.+++++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 455677788877664 3578999999999998654321 22222234555443 1 35788999998
Q ss_pred CCCCCCeEEEeecCCCc--ccccCCcCCHHHHHHHHhcC
Q 015368 227 PKSKRPALIFLHLEAGK--ATPFRHQFTRLAIANFVTHT 263 (408)
Q Consensus 227 ~~~~~p~l~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~ 263 (408)
+.|++++|+.++.. ...+.|..+.+++.+++++.
T Consensus 534 ---g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 ---GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ---CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 69999999865433 35778999999999999764
No 287
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.029 Score=55.17 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=66.0
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHHHc--------CCCcCc
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAYP 129 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~P 129 (408)
=..+.|..+-.++||++|-.-.+||..|+-|..+= .++|+.++.++.-++||-++-+++-+.| |-.|.|
T Consensus 31 W~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 31 WGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred cCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 45788998889999999999999999999997763 6678888888999999999988776555 356899
Q ss_pred EEEEEe-CCeE
Q 015368 130 TLYLFV-AGVR 139 (408)
Q Consensus 130 t~~~~~-~g~~ 139 (408)
-.+|.- +|+.
T Consensus 111 LtVfLTPd~kP 121 (667)
T COG1331 111 LTVFLTPDGKP 121 (667)
T ss_pred eeEEECCCCce
Confidence 998887 7754
No 288
>PRK10824 glutaredoxin-4; Provisional
Probab=95.68 E-value=0.035 Score=42.26 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=39.2
Q ss_pred HHHHHcCCCcEEEEEec----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH----HHcCCCcCcEEEEEeCC
Q 015368 66 FSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAG 137 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g 137 (408)
.++.+.++ +|+|.-.. ||||+|++....+... ++.+..+|++++.++. +.-|-..+|.+++ +|
T Consensus 8 v~~~I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G 78 (115)
T PRK10824 8 IQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALSAC------GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DG 78 (115)
T ss_pred HHHHHhcC-CEEEEECCCCCCCCCchHHHHHHHHHHc------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CC
Confidence 44556554 45554333 6999999988877665 2444556666655443 3346678888754 66
No 289
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.093 Score=39.11 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=41.8
Q ss_pred HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-h----HHHHcCCCcCcEEEEEeCCe
Q 015368 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-D----LAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~----~~~~~~i~~~Pt~~~~~~g~ 138 (408)
++.++.++ ++ |.|..+||+.|+.+...|.+ ++....++.+|-+++. + +.+.-+.+.+|.+++ +|+
T Consensus 7 v~~~i~~~-~V-VifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 7 VRKMISEN-PV-VIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred HHHHhhcC-CE-EEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 44555444 34 44889999999997666666 4446677777766553 2 333345678898755 663
No 290
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.19 E-value=0.069 Score=44.38 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=79.7
Q ss_pred CCcEEc-ChhhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368 56 KDVVSL-NGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (408)
Q Consensus 56 ~~~~~l-~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (408)
..|.++ +++.|-..+.+. -.++|..|-+.-+-|..+-..+.-+|.+|. .++|.++-... -...++|...++|++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~-~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSN-TGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecc-ccchhhhcccCCceE
Confidence 466777 467888877543 367889999999999999999999999998 78999887443 456789999999999
Q ss_pred EEEeCCeEeEEee-------CCCCHHHHHHHHHhHh
Q 015368 132 YLFVAGVRQFQFF-------GERTRDVISAWVREKM 160 (408)
Q Consensus 132 ~~~~~g~~~~~~~-------g~~~~~~l~~~i~~~~ 160 (408)
.+|++|+.+..|. ....+.++..|+++.-
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9999997554332 2456677777777664
No 291
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.09 E-value=0.67 Score=34.93 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=63.3
Q ss_pred ChhhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC---
Q 015368 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG--- 137 (408)
Q Consensus 62 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g--- 137 (408)
+.++++..+... +.++|-|+..--. .....|.++|+.+++++.|+... +..+.+++++. .|.+++|+.-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHh
Confidence 345677777665 7777777766433 46778999999998889997665 45778888887 4777777311
Q ss_pred ----eEeEEeeCC-CCHHH-HHHHHHh
Q 015368 138 ----VRQFQFFGE-RTRDV-ISAWVRE 158 (408)
Q Consensus 138 ----~~~~~~~g~-~~~~~-l~~~i~~ 158 (408)
.....|.|. .+.++ |.+||+.
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 124567877 67656 9999975
No 292
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.93 E-value=0.16 Score=35.52 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=48.3
Q ss_pred EEEecCCCCcCHH---HHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcC-CHHHHHHH
Q 015368 185 LGFLHDLEGMESE---ELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANF 259 (408)
Q Consensus 185 i~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~-~~~~i~~f 259 (408)
|-|+.+||.++.. .+..++ ++...+.+..+.+.+.+.++++. +.|++++ ++ . ..+.|.. +.+.+.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~---~vPti~i--~G--~-~~~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVT---ATPGVAV--DG--E-LVIMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCC---cCCEEEE--CC--E-EEEEeccCCHHHHHHH
Confidence 5578899998544 455555 56677888888877778889998 5899998 22 2 2377753 44778777
Q ss_pred H
Q 015368 260 V 260 (408)
Q Consensus 260 i 260 (408)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 6
No 293
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.92 E-value=0.047 Score=52.39 Aligned_cols=139 Identities=19% Similarity=0.160 Sum_probs=93.9
Q ss_pred ceEeeccccccccccCCc--cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368 267 LVVTLTIHNAQFVFQDPR--KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA 343 (408)
Q Consensus 267 ~v~~lt~~~~~~~~~~~~--~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 343 (408)
.+.+|+.+++...+-... .+|=+|.+|++ |..+...|+++|+...+=.+-+..+-+||.+.. +..+|+.++|+.
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~-- 116 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG-- 116 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC--
Confidence 367888888886554443 44557888988 999999999999987642233889999998776 899999999954
Q ss_pred CcEEEEEccC--Cccc--cCCCCCChHHHHHHHHHHhcCcc---cccccc---Cchh------hhcCccC--Cccceeee
Q 015368 344 PRVIAYSARD--AKKY--VLNGELTLSSIKSFGEEFLEDKL---LNQSDQ---ISET------ILKLPSQ--SRASYQLR 405 (408)
Q Consensus 344 ~p~i~i~~~~--~~~y--~~~~~~~~~~i~~Fi~~~~~gk~---~~kse~---iP~~------~~~~~~~--~~~~~~~~ 405 (408)
.|.+.++..+ +..+ .+.+.....++..++..-++..- .+-+-| .+++ ++...++ +|-.++++
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e 196 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE 196 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence 6899888773 2112 12445556778777776666555 233444 2222 5665444 36666666
Q ss_pred ccC
Q 015368 406 THE 408 (408)
Q Consensus 406 ~~~ 408 (408)
+++
T Consensus 197 ~~~ 199 (606)
T KOG1731|consen 197 TEP 199 (606)
T ss_pred cCC
Confidence 653
No 294
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=94.38 E-value=0.62 Score=37.68 Aligned_cols=89 Identities=10% Similarity=0.150 Sum_probs=57.0
Q ss_pred cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccc------cchh-hhccC-CCCCCcEEEEEccCC
Q 015368 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVG------RRVS-QEFGV-SGNAPRVIAYSARDA 354 (408)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~------~~l~-~~~~i-~~~~~p~i~i~~~~~ 354 (408)
.++.++.+||. |.+..+.+++++++++-. +..+-+|.... .|. .... ..++. .....|..++++.++
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~---Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLP---VYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCc---EEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 45667778887 999999999999998644 55544443210 111 1111 23311 123468888888854
Q ss_pred c-cc-cCCCCCChHHHHHHHHHHh
Q 015368 355 K-KY-VLNGELTLSSIKSFGEEFL 376 (408)
Q Consensus 355 ~-~y-~~~~~~~~~~i~~Fi~~~~ 376 (408)
. .+ ...|.++.+++.+.++.++
T Consensus 130 ~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CEEEEEeecccCHHHHHHHHHHhC
Confidence 4 34 5788999999998888754
No 295
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.33 E-value=0.11 Score=49.56 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH---HH---------cCCCcCcEEEEEeCCe
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KE---------YNILAYPTLYLFVAGV 138 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~---------~~i~~~Pt~~~~~~g~ 138 (408)
++.|..+|||+|++....+++. ++.+-.+|+++++... ++ .|.+++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6778999999999987766652 5888888888766322 22 36788999965 553
No 296
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=93.91 E-value=0.83 Score=37.66 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=61.5
Q ss_pred CccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc-------------------cccchhhhccCCC
Q 015368 283 PRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-------------------VGRRVSQEFGVSG 341 (408)
Q Consensus 283 ~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~-------------------~~~~l~~~~~i~~ 341 (408)
+.+.++. +.++|. |......+.++++++.+. ++.++.++.++.. -...+.+.||+.
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~- 137 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG- 137 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC-
Confidence 3455444 445555 888889999999998753 1777777765321 124566788884
Q ss_pred CCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHh
Q 015368 342 NAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFL 376 (408)
Q Consensus 342 ~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~ 376 (408)
..|.+++++.+|+ .+.+.|..+.+++.++++++.
T Consensus 138 -~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 138 -PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred -CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 3688888887444 335688889999999998763
No 297
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=93.86 E-value=0.33 Score=43.41 Aligned_cols=88 Identities=7% Similarity=-0.019 Sum_probs=61.6
Q ss_pred cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc------ccccchhhhccCCCCCCcEEEEEcc-CCcc
Q 015368 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE------GVGRRVSQEFGVSGNAPRVIAYSAR-DAKK 356 (408)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~------~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~ 356 (408)
.++.++..+|. |......+++++++++-. +..+-+|.... .....+.+.+|+. ..|.+++++. ++..
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~---Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~--~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIE---VLPVSVDGGPLPGFPNARPDAGQAQQLKIR--TVPAVFLADPDPNQF 243 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcE---EEEEeCCCCccccCCcccCCHHHHHHcCCC--cCCeEEEEECCCCEE
Confidence 34456667776 999999999999999755 65566654321 0123466888884 4789998887 4444
Q ss_pred cc-CCCCCChHHHHHHHHHHhc
Q 015368 357 YV-LNGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 357 y~-~~~~~~~~~i~~Fi~~~~~ 377 (408)
.. ..|.++.++|.+.+..+..
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 43 4578999999999887765
No 298
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=93.53 E-value=0.47 Score=41.00 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=67.7
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC--Cc----EEEEEeCcc--------------
Q 015368 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG--EA----DLVMVDAYL-------------- 115 (408)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~--~v----~~~~v~~~~-------------- 115 (408)
.+.+-+++.+.+.-..+|.++++|-=+.|| -|-.+...+.++.++.+. ++ .|+.||-..
T Consensus 123 ~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~ 202 (280)
T KOG2792|consen 123 SLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFH 202 (280)
T ss_pred EEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcC
Confidence 445555555554445789999999999998 688888777777776655 22 345555321
Q ss_pred ------------cHhHHHHcCCCcC--c-----------E--EEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 116 ------------EKDLAKEYNILAY--P-----------T--LYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 116 ------------~~~~~~~~~i~~~--P-----------t--~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
-.++|++|.|..- | + +++++ +|+.+.-|--.++++++.+-|.++..
T Consensus 203 pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 203 PKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred hhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 1346777776422 2 3 34445 78555555456899999888877653
No 299
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=93.53 E-value=0.1 Score=39.64 Aligned_cols=85 Identities=21% Similarity=0.392 Sum_probs=54.2
Q ss_pred CccEEEEEe-eCCC-chHHHHHHH---HHHHHhcCCcceEEEEEEEcCCcc-----------------cccchhhhccCC
Q 015368 283 PRKQLWLFA-PAYG-SDKVILTFE---EVAKALKGKVNMLLHVYVEMNSEG-----------------VGRRVSQEFGVS 340 (408)
Q Consensus 283 ~~~~~i~f~-~~~~-~~~~~~~~~---~vA~~~~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~~i~ 340 (408)
+.+.+++|. ++|. |++....+. +++..++.+ +.++.++..... -...+++.+|+.
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDD---FQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCE---CEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcC---eEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 446666554 4555 777766666 455666656 788888876532 123578889995
Q ss_pred CCCCcEEEEEccCCc-cccCCCCCChHHHHHHH
Q 015368 341 GNAPRVIAYSARDAK-KYVLNGELTLSSIKSFG 372 (408)
Q Consensus 341 ~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi 372 (408)
. .|.+++.+.+|+ .+.+.|-.+.+++.+++
T Consensus 82 g--tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 G--TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp S--SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred c--cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 5 689999987555 45678988999988764
No 300
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.48 E-value=0.4 Score=42.59 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=57.2
Q ss_pred CcccccChhHHHHHhcc---CCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCeE
Q 015368 163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~~---~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~l 234 (408)
.+.+|.+.+++-..+.. ...+||-||.+.... ....+..+|.....++|..+... .+...|... +.|+|
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~---~LPtl 202 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDK---NLPTL 202 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TT---C-SEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCccc---CCCEE
Confidence 45567666666666643 234555566554332 45556778877888999876433 267788887 58999
Q ss_pred EEeecCCC--ccccc----CCcCCHHHHHHHHhcCC
Q 015368 235 IFLHLEAG--KATPF----RHQFTRLAIANFVTHTK 264 (408)
Q Consensus 235 ~~~~~~~~--~~~~y----~g~~~~~~i~~fi~~~~ 264 (408)
++|+.+.- ..+.+ ..+++..+|..|+..+-
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99997641 11121 23477899999998654
No 301
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=93.34 E-value=0.3 Score=37.66 Aligned_cols=74 Identities=5% Similarity=0.043 Sum_probs=47.5
Q ss_pred CCeEEEEEecCCCCcCHHHHHHHhccCC--------------------------ceeEEEecCHhHHhhcCCCCCCCCCe
Q 015368 180 ESKLVLGFLHDLEGMESEELAAASKLHS--------------------------DVNFYQTTSADVAEFFHIHPKSKRPA 233 (408)
Q Consensus 180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~~--------------------------~~~f~~~~~~~l~~~~~i~~~~~~p~ 233 (408)
++.+++.|+.+||..+......+..+.. .+.+....+..+++.|++. +.|+
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~---~~P~ 96 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVS---VTPA 96 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCC---cccE
Confidence 4678888888888865444322221111 1222223445788899998 5899
Q ss_pred EEEeecCCCcccccCCcCCHHHHH
Q 015368 234 LIFLHLEAGKATPFRHQFTRLAIA 257 (408)
Q Consensus 234 l~~~~~~~~~~~~y~g~~~~~~i~ 257 (408)
++++.+++ ....+.|-.+.+.|.
T Consensus 97 ~~vid~~g-i~~~~~g~~~~~~~~ 119 (123)
T cd03011 97 IVIVDPGG-IVFVTTGVTSEWGLR 119 (123)
T ss_pred EEEEcCCC-eEEEEeccCCHHHHH
Confidence 99998765 556677888777764
No 302
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.06 E-value=0.79 Score=34.91 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=61.3
Q ss_pred CccEEEEEee-CC-CchHHHH-HHH--HHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCc-
Q 015368 283 PRKQLWLFAP-AY-GSDKVIL-TFE--EVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAK- 355 (408)
Q Consensus 283 ~~~~~i~f~~-~~-~~~~~~~-~~~--~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~- 355 (408)
++++++.+.. ++ .|+.... .|. ++.+.++.+ +.+..+|.++.+ ...+++.+++. ..|.+++++. ++.
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e-~~~~~~~~~~~--~~P~~~~i~~~~g~~ 90 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE-GQRFLQSYKVD--KYPHIAIIDPRTGEV 90 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc-HHHHHHHhCcc--CCCeEEEEeCccCcE
Confidence 3355554444 33 2555433 343 577777777 888888987655 56788888884 4789888887 443
Q ss_pred cccCCCCCChHHHHHHHHHHhcC
Q 015368 356 KYVLNGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 356 ~y~~~~~~~~~~i~~Fi~~~~~g 378 (408)
.+.+.|..+++++.+-++.+..+
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHHhc
Confidence 55678999999888888877653
No 303
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.56 E-value=1.5 Score=36.76 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=28.4
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEE
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV 111 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v 111 (408)
.+..|+..-||+|-...+.+.++.+.+.+ .|.+.-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 46789999999999999999999999843 4444333
No 304
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=92.48 E-value=0.8 Score=30.86 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=41.6
Q ss_pred EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEE
Q 015368 287 LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYS 350 (408)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~ 350 (408)
.+++.+++. |+.....+++++..+ .+ +.|..+|.++. +.+.+.+|+.. .|.+++-
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~-~~---i~~~~id~~~~---~~l~~~~~i~~--vPti~i~ 59 (67)
T cd02973 4 EVFVSPTCPYCPDAVQAANRIAALN-PN---ISAEMIDAAEF---PDLADEYGVMS--VPAIVIN 59 (67)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhC-Cc---eEEEEEEcccC---HhHHHHcCCcc--cCEEEEC
Confidence 455667776 889999999998765 35 99999998764 46778999943 6888764
No 305
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.21 E-value=0.54 Score=45.82 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=66.9
Q ss_pred ccccChhHHHHHhccCC--eEEEEEecCCCCcCHHH----HHHH--hccCCceeEE---Ee----cCHhHHhhcCCCCCC
Q 015368 165 YSITTTDEAERILTVES--KLVLGFLHDLEGMESEE----LAAA--SKLHSDVNFY---QT----TSADVAEFFHIHPKS 229 (408)
Q Consensus 165 ~~i~~~~~~~~~~~~~~--~~vi~f~~~~~~~~~~~----~~~~--a~~~~~~~f~---~~----~~~~l~~~~~i~~~~ 229 (408)
..+.+..+++..+.+++ ++++-|+.+||-.+... |.+. .....++..- .+ .+.++.+++++-
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~--- 533 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF--- 533 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC---
Confidence 44556668999997766 99999999999764332 2211 1122233332 22 234567788876
Q ss_pred CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (408)
Q Consensus 230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (408)
+.|++++|..++..+....|.++.+.+.+|+++.
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 6899999998777777799999999999999764
No 306
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=92.01 E-value=1.1 Score=34.68 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=44.8
Q ss_pred ChhHHHHHhccCCeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEe---cCHhHHh--------hcCCCCCCC
Q 015368 169 TTDEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---TSADVAE--------FFHIHPKSK 230 (408)
Q Consensus 169 ~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~~~~l~~--------~~~i~~~~~ 230 (408)
+.+.++...+.+++++|.|+++||..+...-. .++ .+..++.+..+ ..+++.+ .+++. |
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~---G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQG---G 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC---C
Confidence 34567777788889999999999998654322 222 23345544443 3334433 24665 7
Q ss_pred CCeEEEeecCC
Q 015368 231 RPALIFLHLEA 241 (408)
Q Consensus 231 ~p~l~~~~~~~ 241 (408)
+|+++++.+.+
T Consensus 81 ~Pt~vfl~~~G 91 (124)
T cd02955 81 WPLNVFLTPDL 91 (124)
T ss_pred CCEEEEECCCC
Confidence 99999998765
No 307
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=1.1 Score=39.46 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
+++++|+.++|++++-.. .+.|..+.+++.+.|...
T Consensus 207 ~a~~~gv~gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHhcCCCcCCeEEECCe-----eecCCCCHHHHHHHHHHh
Confidence 456789999999866432 778888888888888654
No 308
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=91.64 E-value=1.5 Score=36.44 Aligned_cols=90 Identities=7% Similarity=0.008 Sum_probs=60.9
Q ss_pred EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC-ccc-------ccchhhhccCCCCCCcEEEEEccCCcc
Q 015368 286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS-EGV-------GRRVSQEFGVSGNAPRVIAYSARDAKK 356 (408)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~-~~~-------~~~l~~~~~i~~~~~p~i~i~~~~~~~ 356 (408)
++.|+..||. |.+....+++++++++-. +.-+-+|... ..| ...+...||......|..++++.+++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~---Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFS---VFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCE---EEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence 5667888887 999999999999998643 3333344221 011 112345667422357888888887765
Q ss_pred -c-cCCCCCChHHHHHHHHHHhcC
Q 015368 357 -Y-VLNGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 357 -y-~~~~~~~~~~i~~Fi~~~~~g 378 (408)
+ ..-|..+.+++.+-++.+++-
T Consensus 150 ~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 150 ALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhh
Confidence 4 478999999998888887753
No 309
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=91.35 E-value=2 Score=42.14 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=69.7
Q ss_pred CCceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC---c------------
Q 015368 265 HPLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS---E------------ 327 (408)
Q Consensus 265 ~p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~---~------------ 327 (408)
.|.+...+.+.-...++.++|+++ ++..|+. |....+.+.+++++++.+ ++.++.+.... .
T Consensus 38 lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~ 115 (521)
T PRK14018 38 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAG 115 (521)
T ss_pred CCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHh
Confidence 454544444433334445565544 6677887 999999999999998732 16666554210 0
Q ss_pred ----------ccccchhhhccCCCCCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhc
Q 015368 328 ----------GVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 328 ----------~~~~~l~~~~~i~~~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~ 377 (408)
+-...+.+.|++. ..|..++++.+| ..+.+.|.++.++|.++|+....
T Consensus 116 ~~y~~~pV~~D~~~~lak~fgV~--giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~ 174 (521)
T PRK14018 116 LDYPKLPVLTDNGGTLAQSLNIS--VYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNA 174 (521)
T ss_pred CCCcccceeccccHHHHHHcCCC--CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhh
Confidence 0022455677774 368887777644 45667899999999999996553
No 310
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=91.26 E-value=0.93 Score=34.77 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=45.0
Q ss_pred CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCc
Q 015368 282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAK 355 (408)
Q Consensus 282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~ 355 (408)
.+.|+++ ++.+||. |+.....+.+.+...... ..|+.++.+... ......+++.....|.+++++.+|+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCC
Confidence 4446655 4567776 888888888877765444 456666665432 2334677776555899999986444
No 311
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=3.8 Score=36.69 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCCCceEeeccccccccccCCc---cEEEEEeeC-----CC-chHHHHHHHHHHHHhcCCc-----ceEEE
Q 015368 254 LAIANFVTHTKHPLVVTLTIHNAQFVFQDPR---KQLWLFAPA-----YG-SDKVILTFEEVAKALKGKV-----NMLLH 319 (408)
Q Consensus 254 ~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~---~~~i~f~~~-----~~-~~~~~~~~~~vA~~~~~~~-----~~i~f 319 (408)
+.+.+-++--+..-+..++.+++..+...+. -.+++|+.. +. |.+..++++-+|.-++... ..+-|
T Consensus 28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF 107 (331)
T KOG2603|consen 28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF 107 (331)
T ss_pred HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence 4455555433444577788888887776543 334455543 22 6677789999999876210 12889
Q ss_pred EEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCcccc---CC---CCCChHHHHHHHHHHhcCcc
Q 015368 320 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV---LN---GELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 320 ~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~---~~---~~~~~~~i~~Fi~~~~~gk~ 380 (408)
+.+|.++ .+...+.+++.+ .|.++++.+ ++.+-. |+ -....|++.+|+++.-+=.+
T Consensus 108 ~~Vd~~e---~p~~Fq~l~ln~--~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 108 CMVDYDE---SPQVFQQLNLNN--VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred EEEeccc---cHHHHHHhcccC--CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 9999876 457779999954 689998866 222111 22 13458899999998765443
No 312
>smart00594 UAS UAS domain.
Probab=90.70 E-value=1.4 Score=34.10 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=46.2
Q ss_pred HHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC--c----cccCCCCCChHHHHHHH
Q 015368 305 EVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA--K----KYVLNGELTLSSIKSFG 372 (408)
Q Consensus 305 ~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~--~----~y~~~~~~~~~~i~~Fi 372 (408)
++.+-..++ +.+..+|....+ +..++..+++. ..|.+++++.++ . .....|..+++++..++
T Consensus 54 ~V~~~i~~~---fv~~~~dv~~~e-g~~l~~~~~~~--~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 54 AVKSLIREN---FIFWQVDVDTSE-GQRVSQFYKLD--SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHHHcC---EEEEEecCCChh-HHHHHHhcCcC--CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 456666667 888888988776 67888999995 478988888743 2 22467889999888776
No 313
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=90.70 E-value=1.9 Score=38.02 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=59.8
Q ss_pred EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc------cccchhhhccCCCCCCcEEEEEccC-Cccc
Q 015368 286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG------VGRRVSQEFGVSGNAPRVIAYSARD-AKKY 357 (408)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~p~i~i~~~~-~~~y 357 (408)
++++|.+.|. |.+...+++.+|.+|+=. +..+-+|+.... ......+.+|+. ..|++++.+.+ ++.+
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~---v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGIS---VIPISVDGTLIPGLPNSRSDSGQAQHLGVK--YFPALYLVNPKSQKMS 228 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCe---EEEEecCCCCCCCCCCccCChHHHHhcCCc--cCceEEEEECCCCcEE
Confidence 3445555555 899999999999999977 777777765321 112355677784 47899998884 5555
Q ss_pred cC-CCCCChHHHHHHHHHHhc
Q 015368 358 VL-NGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 358 ~~-~~~~~~~~i~~Fi~~~~~ 377 (408)
+. -|.++.++|.+=|..+..
T Consensus 229 pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 54 578999888655555444
No 314
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.65 E-value=0.84 Score=31.13 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=38.1
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc--------------H--hHHHHcCCCcCcEEEEEeCCeEeE
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--------------K--DLAKEYNILAYPTLYLFVAGVRQF 141 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--------------~--~~~~~~~i~~~Pt~~~~~~g~~~~ 141 (408)
++|+|..||.|..+..+++++. +.+-.|++.+. + +-++..|--|+|.+. .++|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall-~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALL-TDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEE-eCCCcEEE
Confidence 6899999999998877777654 44445555432 1 224667778899984 45665543
No 315
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.27 E-value=1.5 Score=37.74 Aligned_cols=80 Identities=10% Similarity=0.191 Sum_probs=55.2
Q ss_pred EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc------ccccchhhhccCCCCCCcEEEEEccCC-ccc
Q 015368 286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE------GVGRRVSQEFGVSGNAPRVIAYSARDA-KKY 357 (408)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~------~~~~~l~~~~~i~~~~~p~i~i~~~~~-~~y 357 (408)
++++|.+.|. |+....+++.++.++.=. +..+-+|+... .....+.+.||+. ..|++++.+.++ ..+
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~---v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFS---VIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFLVNPNTKKWY 198 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCE---EEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEEEECCCCeEE
Confidence 3445556666 999999999999999755 66666664311 1134567788994 578999888844 555
Q ss_pred cC-CCCCChHHHHH
Q 015368 358 VL-NGELTLSSIKS 370 (408)
Q Consensus 358 ~~-~~~~~~~~i~~ 370 (408)
+. -|.++.++|.+
T Consensus 199 pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 199 PVSQGFMSLDELED 212 (215)
T ss_pred EEeeecCCHHHHHH
Confidence 54 57888887753
No 316
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=90.26 E-value=0.62 Score=34.70 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=40.2
Q ss_pred ccccChhHHHHHhcc--CCeEEEEEecCCCCcCHHH---HHHHhc-cCCceeEEEe-------cCHhHHhhcCCCCCCCC
Q 015368 165 YSITTTDEAERILTV--ESKLVLGFLHDLEGMESEE---LAAASK-LHSDVNFYQT-------TSADVAEFFHIHPKSKR 231 (408)
Q Consensus 165 ~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~~~~---~~~~a~-~~~~~~f~~~-------~~~~l~~~~~i~~~~~~ 231 (408)
..|.+.++++.+++. .++++|.=.+..|.-.... |..... ....+.++.. .+..+++.||+.- -.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ES 79 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------S
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CC
Confidence 357899999999976 4555553334557654433 434332 2323666543 4567899999985 46
Q ss_pred CeEEEeecCC
Q 015368 232 PALIFLHLEA 241 (408)
Q Consensus 232 p~l~~~~~~~ 241 (408)
|.+++++++.
T Consensus 80 PQ~ili~~g~ 89 (105)
T PF11009_consen 80 PQVILIKNGK 89 (105)
T ss_dssp SEEEEEETTE
T ss_pred CcEEEEECCE
Confidence 9999999763
No 317
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=90.21 E-value=0.83 Score=37.83 Aligned_cols=44 Identities=2% Similarity=-0.107 Sum_probs=31.7
Q ss_pred HhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368 217 ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (408)
Q Consensus 217 ~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (408)
..+.+.|++. +.|+.+++.+++.-...+.|..+.+++.+++...
T Consensus 127 ~~~~~~~~v~---~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVY---GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCe---eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 3456667766 5798787876655566677888889999888753
No 318
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=90.13 E-value=0.66 Score=36.01 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCCcCHHHHHHHhccC--CceeEEE--------------------------ecCHhHHhhcCCCCCCCC
Q 015368 180 ESKLVLGFLHDLEGMESEELAAASKLH--SDVNFYQ--------------------------TTSADVAEFFHIHPKSKR 231 (408)
Q Consensus 180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~--~~~~f~~--------------------------~~~~~l~~~~~i~~~~~~ 231 (408)
+++++|.|+.+||..+......+.++. ..+.+.. .....+++.|++. +.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~---~~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY---GV 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC---CC
Confidence 567888899999987555444333211 1122221 1234566667776 47
Q ss_pred CeEEEeecCCCcccccCCcCCHHH
Q 015368 232 PALIFLHLEAGKATPFRHQFTRLA 255 (408)
Q Consensus 232 p~l~~~~~~~~~~~~y~g~~~~~~ 255 (408)
|+.+++.+++.....+.|..+.+.
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHh
Confidence 877767655544556677766543
No 319
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.98 E-value=1.6 Score=31.17 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=60.3
Q ss_pred CcEEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368 74 RNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (408)
Q Consensus 74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (408)
..++=.|.|..-+.+++....+.++-+.+ .+.+.+-.||+.+++++++.++|-.+||++=...+ ...+..|.++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccc
Confidence 35666778888889999988888886654 55788889999999999999999999997655555 66788888754
No 320
>PRK09301 circadian clock protein KaiB; Provisional
Probab=89.30 E-value=1.7 Score=32.01 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (408)
+..++=+|.|..-+..++....+.++-+.+ .+.+.+-.||+.++++++..++|-.+||++=...+ ...+..|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeeccccc
Confidence 356777888988899999988888886654 55788888999999999999999999996655555 67788898754
No 321
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.14 E-value=2.3 Score=29.17 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=49.0
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (408)
.+.+|-+..-+..++....+.++-+++ ++.+.+-.||+.++++++..++|-.+||++=...
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 455566666688888888888887766 4489999999999999999999999999764443
No 322
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=88.81 E-value=2 Score=31.10 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=42.3
Q ss_pred cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEE
Q 015368 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 349 (408)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i 349 (408)
.+.+|..+++. |......+++++..+. + +.|..+|.+.. +.+...+|+.. .|.+++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~---i~~~~vd~~~~---~e~a~~~~V~~--vPt~vi 71 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP-N---IEHEMIDGALF---QDEVEERGIMS--VPAIFL 71 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC-C---ceEEEEEhHhC---HHHHHHcCCcc--CCEEEE
Confidence 33444556665 8999999999998875 4 99999997753 46779999953 688876
No 323
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.72 E-value=9.9 Score=29.71 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=53.5
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcC--cEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAY--PTLYLFVAGVRQFQFFGERTRDVIS 153 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~--Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (408)
-++.++.|.|+=|......++ ..++.+-.+..++-..+-+++||..- -.--.+-+| ....|...++++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~G---y~vEGHVPa~aI~ 97 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVING---YYVEGHVPAEAIA 97 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcC---EEEeccCCHHHHH
Confidence 467789999999998765554 12678888888888888888887521 111222356 3457889999999
Q ss_pred HHHHhHh
Q 015368 154 AWVREKM 160 (408)
Q Consensus 154 ~~i~~~~ 160 (408)
.++.+.-
T Consensus 98 ~ll~~~p 104 (149)
T COG3019 98 RLLAEKP 104 (149)
T ss_pred HHHhCCC
Confidence 8887654
No 324
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.59 E-value=1.9 Score=34.55 Aligned_cols=53 Identities=9% Similarity=0.209 Sum_probs=36.1
Q ss_pred EEEEecC------CChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCC----CcCcEEEEEeCC
Q 015368 77 MVMFYAN------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNI----LAYPTLYLFVAG 137 (408)
Q Consensus 77 ~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i----~~~Pt~~~~~~g 137 (408)
+|.|.++ +|++|+.....|+.. +|.+-.+|++.+++ +.+..+- ..+|.+++ +|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G 68 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DG 68 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CC
Confidence 3455666 899999988777653 57888889877654 3344454 57888754 56
No 325
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.57 E-value=1.7 Score=37.94 Aligned_cols=59 Identities=12% Similarity=0.051 Sum_probs=39.5
Q ss_pred HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcC-CCcCcEEEEEe
Q 015368 69 FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFV 135 (408)
Q Consensus 69 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-i~~~Pt~~~~~ 135 (408)
....||+.+++.-+.|||.|...+=.+--+-.+++. +.+.....+. .+ -..+|++.+..
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 336789999999999999999887666666666663 3322222111 11 24589998876
No 326
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=7.8 Score=32.32 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=59.7
Q ss_pred CCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHHH
Q 015368 73 NRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAKE 122 (408)
Q Consensus 73 ~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~~ 122 (408)
+|.+++.||- +.-+-|-.+...|.+.+.++++ ++.++.+.+|. +.++|+.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 3666666663 4556788899999999999987 88888888764 3568888
Q ss_pred cCCCc------CcEEEEEe-CCeEeEE--eeC--CCCHHHHHHHHHhH
Q 015368 123 YNILA------YPTLYLFV-AGVRQFQ--FFG--ERTRDVISAWVREK 159 (408)
Q Consensus 123 ~~i~~------~Pt~~~~~-~g~~~~~--~~g--~~~~~~l~~~i~~~ 159 (408)
||+-. .=.+++++ +|.+... |.. .++.+++.+-++..
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 88763 22567777 7854322 222 47788877766533
No 327
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=87.71 E-value=4.4 Score=35.59 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=60.6
Q ss_pred EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-cc-----ccchhhhccCCCCCCcEEEEEccC-Cccc
Q 015368 286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GV-----GRRVSQEFGVSGNAPRVIAYSARD-AKKY 357 (408)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~-----~~~l~~~~~i~~~~~p~i~i~~~~-~~~y 357 (408)
++++|.+.|. |.++..+++.+|.+|+=. +.-+-+|+... .| .......+|+. ..|++++.+.+ ++.+
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~---v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLS---VIPVSVDGVINPLLPDSRTDQGQAQRLGVK--YFPALMLVDPKSGSVR 221 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCe---EEEEecCCCCCCCCCCCccChhHHHhcCCc--ccceEEEEECCCCcEE
Confidence 3445555555 999999999999999977 77778876432 11 11233567773 46899999884 4555
Q ss_pred cC-CCCCChHHHHHHHHHHhcC
Q 015368 358 VL-NGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 358 ~~-~~~~~~~~i~~Fi~~~~~g 378 (408)
+. -|.++.++|.+=+..+..|
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHhc
Confidence 54 5789999987666666555
No 328
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=87.39 E-value=2.4 Score=35.51 Aligned_cols=41 Identities=2% Similarity=-0.079 Sum_probs=29.2
Q ss_pred HHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 219 l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (408)
+...|++. +.|+.+++...+.-...+.|..+.+++.++|..
T Consensus 134 ~~~~~gv~---~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 134 LGLDLGVY---GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred HHHhcCCC---cCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 44466666 589888887665556677788888888877753
No 329
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=87.02 E-value=11 Score=28.10 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=67.2
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHH----HHcCCC-cCcEEEEEe---CCeEeEE
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA----KEYNIL-AYPTLYLFV---AGVRQFQ 142 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~----~~~~i~-~~Pt~~~~~---~g~~~~~ 142 (408)
+...+|-|--+--+.-.++.+.++++|+.+.. +..++-||-++-+-+. +.|+|. .-|.+=+++ +..+...
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 35678888888889999999999999999877 8999999999987664 345654 249988887 2224455
Q ss_pred eeCC---CCHHHHHHHHHhH
Q 015368 143 FFGE---RTRDVISAWVREK 159 (408)
Q Consensus 143 ~~g~---~~~~~l~~~i~~~ 159 (408)
-.+. .+++.+..||...
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 5444 6789999999764
No 330
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=86.71 E-value=4.5 Score=29.97 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=44.4
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhc-CCcceEEEEEEEcCCc--c------------------cccchhhhccC
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALK-GKVNMLLHVYVEMNSE--G------------------VGRRVSQEFGV 339 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~--~------------------~~~~l~~~~~i 339 (408)
+.+.++ ++..++. |......+.++..++. .. +.++.++.+.. + -...+.+.||+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG---VEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC---eEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 334444 4555666 8888889999999986 34 88888887752 0 01356677777
Q ss_pred CCCCCcEEEEEccCC
Q 015368 340 SGNAPRVIAYSARDA 354 (408)
Q Consensus 340 ~~~~~p~i~i~~~~~ 354 (408)
. ..|.+++++.++
T Consensus 96 ~--~~P~~~l~d~~g 108 (116)
T cd02966 96 R--GLPTTFLIDRDG 108 (116)
T ss_pred C--ccceEEEECCCC
Confidence 4 357777777644
No 331
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=86.62 E-value=4.5 Score=31.05 Aligned_cols=86 Identities=7% Similarity=0.122 Sum_probs=55.0
Q ss_pred cEEEEEeeCCC---chHHHHHHHHHHHHhcCCcceEEEEEEEcCCccccc-----------chhhhccCCCCCCcEEEEE
Q 015368 285 KQLWLFAPAYG---SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGR-----------RVSQEFGVSGNAPRVIAYS 350 (408)
Q Consensus 285 ~~~i~f~~~~~---~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~-----------~l~~~~~i~~~~~p~i~i~ 350 (408)
-.+++|++..+ .......|++-...+..+ ++.+..+-.... .. .+.+.|++++... .+++.
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~f-~~vLi 85 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGGF-TVVLI 85 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCce-EEEEE
Confidence 34567776654 344455555533344432 266655543332 33 7788999987655 45555
Q ss_pred cc-CCccccCCCCCChHHHHHHHHHH
Q 015368 351 AR-DAKKYVLNGELTLSSIKSFGEEF 375 (408)
Q Consensus 351 ~~-~~~~y~~~~~~~~~~i~~Fi~~~ 375 (408)
.. ++.|-....+++.++|.+.|+.+
T Consensus 86 GKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 86 GKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred eCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 55 78888888999999999999864
No 332
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=85.40 E-value=4.8 Score=31.28 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=45.3
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--c-------------------ccchhhhccC
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--V-------------------GRRVSQEFGV 339 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--~-------------------~~~l~~~~~i 339 (408)
+.++++ ++..++. |......+.++++++..+.+++.++.++.+... + ...+.+.||+
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 344444 4456666 888888899998888642122667766655331 0 1245567787
Q ss_pred CCCCCcEEEEEccCCcc
Q 015368 340 SGNAPRVIAYSARDAKK 356 (408)
Q Consensus 340 ~~~~~p~i~i~~~~~~~ 356 (408)
. ..|.+++++.+|+.
T Consensus 98 ~--~~P~~~lid~~G~i 112 (131)
T cd03009 98 E--GIPTLIILDADGEV 112 (131)
T ss_pred C--CCCEEEEECCCCCE
Confidence 4 36899999875553
No 333
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=85.39 E-value=3.4 Score=37.17 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=87.4
Q ss_pred CcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHh----ccCCeEEEEEe
Q 015368 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVESKLVLGFL 188 (408)
Q Consensus 113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~vi~f~ 188 (408)
|+-.++.+++++|.-+|-.+.++ |+.... .-..+.+++.+.+.+.-..+-+.-.+..++.+.. +..+.+++.-.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 44457889999999999998886 433322 1247899999999764433344444666655544 34444444333
Q ss_pred cCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCce
Q 015368 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV 268 (408)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v 268 (408)
++.-+..+.....+++...+..+..+.+..+.-..+.- +... ........+.+++.+|++..+.-..
T Consensus 87 Ss~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~a----~~~~~~G~s~~eI~~~l~~~~~~~~ 153 (275)
T TIGR00762 87 SSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLEA----AKLAEEGKSLEEILAKLEELRERTK 153 (275)
T ss_pred CCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHHH----HHHHHcCCCHHHHHHHHHHHHhhcE
Confidence 44344566666666644433445554443332222210 0000 0011112467888888887666666
Q ss_pred EeeccccccccccCCc
Q 015368 269 VTLTIHNAQFVFQDPR 284 (408)
Q Consensus 269 ~~lt~~~~~~~~~~~~ 284 (408)
..+..+++..+...++
T Consensus 154 ~~f~v~~L~~L~~gGR 169 (275)
T TIGR00762 154 LYFVVDTLEYLVKGGR 169 (275)
T ss_pred EEEEECcHHHHHhcCC
Confidence 6666666666655544
No 334
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=85.25 E-value=9.9 Score=26.14 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=49.1
Q ss_pred EEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368 79 MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 79 ~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
+++.++|+.|++..=.++. ++ .+.+..++..+ ...+.+...-..+|++. .+|..+. +...|.+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHH
Confidence 4678999999997644433 32 45566666555 35666777777899997 5674322 678899999
Q ss_pred HhHhCCC
Q 015368 157 REKMTLG 163 (408)
Q Consensus 157 ~~~~~~~ 163 (408)
.+..+.+
T Consensus 68 ~~~~~~~ 74 (75)
T PF13417_consen 68 EERYPGP 74 (75)
T ss_dssp HHHSTSS
T ss_pred HHHcCCC
Confidence 8877543
No 335
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=84.91 E-value=13 Score=27.18 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=50.6
Q ss_pred CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE-eEEeeCCCCHH
Q 015368 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRD 150 (408)
Q Consensus 72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~~~ 150 (408)
++.+.++.|..+. ..|.++...++++++.-. ++.+-..+..+ ..|++.+.++|+. -.+|.|-..-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 3455666676655 889888888888877643 56654433221 3699999887632 37899988888
Q ss_pred HHHHHHHh
Q 015368 151 VISAWVRE 158 (408)
Q Consensus 151 ~l~~~i~~ 158 (408)
++..+|..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88887753
No 336
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.31 E-value=1.8 Score=32.44 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=28.3
Q ss_pred CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113 (408)
Q Consensus 74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~ 113 (408)
|.+++.|-.|.|+.|......+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999888886666554 4666664
No 337
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=8.3 Score=31.19 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=46.5
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc
Q 015368 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY 114 (408)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~ 114 (408)
-.+.+++++.++--.-+++++||-=-|+.|+.-..-...+..+.++|++ ++.+...-|.
T Consensus 17 f~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 17 FSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred eEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 3555666666665555788888888899999888777899999999977 8888888874
No 338
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.11 E-value=11 Score=25.88 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=42.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEEe--CCeEeEEeeCCCCHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVI 152 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l 152 (408)
+..|+.+.|+.|++.+-.+... ++.+-.++.+ ...++ +.-+-..+|++..-+ +|.. -.....|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence 3467889999999987554443 2333333333 22333 334556789886542 2321 2356778
Q ss_pred HHHHHhHhC
Q 015368 153 SAWVREKMT 161 (408)
Q Consensus 153 ~~~i~~~~~ 161 (408)
.+++.+.++
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 888887653
No 339
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.87 E-value=2.8 Score=35.37 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=50.4
Q ss_pred cccChhHHHHHhc--cCCeEEEEEecCCCC---cCHHHHHHHh-c-cCCceeEEEe---cCHhHHhhcCCCCC---CCCC
Q 015368 166 SITTTDEAERILT--VESKLVLGFLHDLEG---MESEELAAAS-K-LHSDVNFYQT---TSADVAEFFHIHPK---SKRP 232 (408)
Q Consensus 166 ~i~~~~~~~~~~~--~~~~~vi~f~~~~~~---~~~~~~~~~a-~-~~~~~~f~~~---~~~~l~~~~~i~~~---~~~p 232 (408)
.+++.+.++.-++ ....|+|-||..|+. ...+.|.+++ + ....+.||.+ .-++++++|+|+.. .-.|
T Consensus 128 yf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 128 YFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred eecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCC
Confidence 3333344444443 456899999987755 4667787777 4 3466778765 45678889988643 2469
Q ss_pred eEEEeecCC
Q 015368 233 ALIFLHLEA 241 (408)
Q Consensus 233 ~l~~~~~~~ 241 (408)
++++|..+.
T Consensus 208 T~ilFq~gk 216 (265)
T KOG0914|consen 208 TYILFQKGK 216 (265)
T ss_pred eEEEEccch
Confidence 999998764
No 340
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.65 E-value=6.5 Score=32.64 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCCcccccChhHHHHHhccCCeEEEEEecCC---CCcCHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368 161 TLGTYSITTTDEAERILTVESKLVLGFLHDL---EGMESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l 234 (408)
.....++.++.++-+....+..+|+-||.+. |.-.-+.+..+|+..-..+|..+ +.+=++.+++|. ..|++
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~Ik---VLP~v 141 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIK---VLPTV 141 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeee---EeeeE
Confidence 4667889899999989988888888899875 34455667778877777888876 445588999999 48999
Q ss_pred EEeecCC
Q 015368 235 IFLHLEA 241 (408)
Q Consensus 235 ~~~~~~~ 241 (408)
++|.++.
T Consensus 142 ~l~k~g~ 148 (211)
T KOG1672|consen 142 ALFKNGK 148 (211)
T ss_pred EEEEcCE
Confidence 9998763
No 341
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=82.14 E-value=1.7 Score=32.48 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=42.0
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcEEEEEe-CCeEeEEe----eCCCC
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFV-AGVRQFQF----FGERT 148 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~-~g~~~~~~----~g~~~ 148 (408)
..|+.++|+.|++....+++. ++.+-.+|..++ .++.+-.+-.+.+.--+++ +|...... ...++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 468899999999987666652 566667776543 2333333333333333444 33211110 23456
Q ss_pred HHHHHHHHHhH
Q 015368 149 RDVISAWVREK 159 (408)
Q Consensus 149 ~~~l~~~i~~~ 159 (408)
.+++.++|.++
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 66666666554
No 342
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=82.05 E-value=10 Score=31.80 Aligned_cols=92 Identities=20% Similarity=0.173 Sum_probs=53.6
Q ss_pred CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----------------cccchhhhccCCCCC
Q 015368 282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----------------VGRRVSQEFGVSGNA 343 (408)
Q Consensus 282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----------------~~~~l~~~~~i~~~~ 343 (408)
.+++.++ ++.++|. |++..+.+.++.++...+ +.++..| +..+ ....+.+.||+. .
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~---vv~Is~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~--~ 146 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETD---VVMISDG-TPAEHRRFLKDHELGGERYVVSAEIGMAFQVG--K 146 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCc---EEEEeCC-CHHHHHHHHHhcCCCcceeechhHHHHhccCC--c
Confidence 3445554 4555665 888888888887765444 5444321 1111 012334555553 3
Q ss_pred CcEEEEEccCCccccCCC-CCChHHHHHHHHHHhcCcc
Q 015368 344 PRVIAYSARDAKKYVLNG-ELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 344 ~p~i~i~~~~~~~y~~~~-~~~~~~i~~Fi~~~~~gk~ 380 (408)
.|..++.+.+|+.-. .+ ..+.+.+++.++....|..
T Consensus 147 ~P~~~lID~~G~I~~-~g~~~~~~~le~ll~~l~~~~~ 183 (189)
T TIGR02661 147 IPYGVLLDQDGKIRA-KGLTNTREHLESLLEADREGFA 183 (189)
T ss_pred cceEEEECCCCeEEE-ccCCCCHHHHHHHHHHHHcCcc
Confidence 588888887554322 34 3456789999998888854
No 343
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=81.99 E-value=9.5 Score=25.84 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=34.8
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-cHhHHHHcCCCcCcEEEEEeCC
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAG 137 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g 137 (408)
+.|+.+||+.|++..-.+.+.. -.+.+..|+... .+++.+......+|++.. ++|
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g 57 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKPAEMLAASPKGTVPVLVL-GNG 57 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCC
Confidence 4578899999998765544432 145566666543 345656666678999842 346
No 344
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=81.64 E-value=9.7 Score=28.55 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=44.6
Q ss_pred cccccChhHHHHHhccCCeEEEEEecCCCCc--C----HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCe
Q 015368 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM--E----SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPA 233 (408)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~--~----~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~ 233 (408)
...+ +.++++.++......++ |+...... + .-.+.++. .+.+....+.+ .+..+..+|++. .+|+
T Consensus 11 ~~~v-d~~~ld~~l~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~---~~Pa 85 (107)
T PF07449_consen 11 WPRV-DADTLDAFLAAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVR---RWPA 85 (107)
T ss_dssp EEEE--CCCHHHHHHCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-T---SSSE
T ss_pred Ceee-chhhHHHHHhCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCc---cCCe
Confidence 3344 46788999988777666 44433322 1 11233444 45566655544 566799999998 5899
Q ss_pred EEEeecC
Q 015368 234 LIFLHLE 240 (408)
Q Consensus 234 l~~~~~~ 240 (408)
++++|.+
T Consensus 86 Lvf~R~g 92 (107)
T PF07449_consen 86 LVFFRDG 92 (107)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999976
No 345
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=79.53 E-value=3.9 Score=31.28 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.9
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~ 117 (408)
..|+.++|+.|++....+++ .++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 36789999999998877666 25777788876654
No 346
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=79.11 E-value=11 Score=29.30 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--c--------------------ccchhhhcc
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--V--------------------GRRVSQEFG 338 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--~--------------------~~~l~~~~~ 338 (408)
++++++ ++..++. |.+....+++++++++++.+++.++.++.+... + ...+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 344444 4566776 888899999999888753122777777655421 0 012334566
Q ss_pred CCCCCCcEEEEEccCCcc
Q 015368 339 VSGNAPRVIAYSARDAKK 356 (408)
Q Consensus 339 i~~~~~p~i~i~~~~~~~ 356 (408)
+. ..|.+++++.+|+.
T Consensus 97 v~--~iPt~~lid~~G~i 112 (132)
T cd02964 97 VE--GIPTLVVLKPDGDV 112 (132)
T ss_pred CC--CCCEEEEECCCCCE
Confidence 63 36888888775543
No 347
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=78.93 E-value=30 Score=27.29 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=61.6
Q ss_pred HcCCCcEEEEEecCCCh----hHHhhhHHHHHHHHHhcCCcEEEEEeCcccH------------------hHHHHcCCCc
Q 015368 70 MGKNRNVMVMFYANWCY----WSKKLAPEFAAAAKMLKGEADLVMVDAYLEK------------------DLAKEYNILA 127 (408)
Q Consensus 70 ~~~~~~~~v~f~a~wC~----~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~------------------~~~~~~~i~~ 127 (408)
.++.|+++|+.+++.-. .|++.+- =+.+.+-++.++.+-.-|+.... ..++.++...
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 35679999999998664 4444321 03334444457777777766542 2355678999
Q ss_pred CcEEEEEe--CC--eEeEEeeCCCCHHHHHHHHHhHh
Q 015368 128 YPTLYLFV--AG--VRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 128 ~Pt~~~~~--~g--~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
+|.+.++- .+ .++.+..|..+.+++.+-+...+
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99999986 22 46788999999999988876553
No 348
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=78.73 E-value=25 Score=33.00 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=61.4
Q ss_pred cCCCcEEEEEecCCChhHHhhh-HHH-HHH-HHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEEe-CCeEeEEee
Q 015368 71 GKNRNVMVMFYANWCYWSKKLA-PEF-AAA-AKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AGVRQFQFF 144 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~-p~~-~~~-~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~ 144 (408)
+.++-+||-|-+..-....++. -.| +.. ++.+...+..++|+... ..+++.-|-+..+|+++++. .|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4556777777777766666665 223 222 22232245555555432 34566778899999999998 898888999
Q ss_pred CCCCHHHHHHHHHhHh
Q 015368 145 GERTRDVISAWVREKM 160 (408)
Q Consensus 145 g~~~~~~l~~~i~~~~ 160 (408)
|..++++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999988887765
No 349
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.54 E-value=4.2 Score=33.82 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=33.7
Q ss_pred HhHHHHcCCCcCcEEEEEeCCeEeEEeeC--CCCHHHHHHHHHhHh
Q 015368 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFG--ERTRDVISAWVREKM 160 (408)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~ 160 (408)
..+++++++.|+||+.+-+||+-..--.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 45789999999999999999965444455 356678888877654
No 350
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=77.98 E-value=9.7 Score=41.31 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=54.3
Q ss_pred cCCeEEEEEecCCCCcCHHH---HHHHh-ccCCc-eeEEEe------------------------------cCHhHHhhc
Q 015368 179 VESKLVLGFLHDLEGMESEE---LAAAS-KLHSD-VNFYQT------------------------------TSADVAEFF 223 (408)
Q Consensus 179 ~~~~~vi~f~~~~~~~~~~~---~~~~a-~~~~~-~~f~~~------------------------------~~~~l~~~~ 223 (408)
..++++|.|+++||.++... +.++. ++.++ +.+..+ .+..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 36789999999999986554 44444 33322 333222 122456677
Q ss_pred CCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (408)
Q Consensus 224 ~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (408)
++. +.|+.+++.+.+.....+.|....+.+.+++..
T Consensus 499 ~V~---~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~ 534 (1057)
T PLN02919 499 GVS---SWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEA 534 (1057)
T ss_pred CCC---ccceEEEECCCCeEEEEEecccCHHHHHHHHHH
Confidence 887 699999997666555677888888888888874
No 351
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=77.55 E-value=27 Score=28.54 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=55.1
Q ss_pred cEEE-EEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCc---------cc-----------------ccchhh
Q 015368 285 KQLW-LFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSE---------GV-----------------GRRVSQ 335 (408)
Q Consensus 285 ~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~---------~~-----------------~~~l~~ 335 (408)
+.++ ++..++. +......+.+++.++.+ + +.|+-+..+.. .+ ...+.+
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~---v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG---VAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHHhhCC---eEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 4333 4444554 56667778888888873 4 77777765431 00 112334
Q ss_pred hccCCCCCCcEEEEEccCCc-ccc--CC-------CCCChHHHHHHHHHHhcCcc
Q 015368 336 EFGVSGNAPRVIAYSARDAK-KYV--LN-------GELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 336 ~~~i~~~~~p~i~i~~~~~~-~y~--~~-------~~~~~~~i~~Fi~~~~~gk~ 380 (408)
.||+. ..|.+++++.+|+ .|. +. +..+.+.+.+-|+.+++|+-
T Consensus 104 ~~~v~--~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAA--CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCC--cCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 55663 3588888887443 222 11 23567889999999999864
No 352
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=77.39 E-value=9.3 Score=29.82 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=36.0
Q ss_pred cccHhHHHHcCCCcCcEEEEEeCCe-----------EeEEeeCCCCHHHHHHHHHhH
Q 015368 114 YLEKDLAKEYNILAYPTLYLFVAGV-----------RQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 114 ~~~~~~~~~~~i~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~~ 159 (408)
.-++.+.++|+|+.+|++++.+++. ......|..+.+...+.+.+.
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 3468999999999999999998662 245667888888877777654
No 353
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=77.20 E-value=4.8 Score=28.43 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC--ccccCCCCCChHHHHHHHH
Q 015368 296 SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA--KKYVLNGELTLSSIKSFGE 373 (408)
Q Consensus 296 ~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~--~~y~~~~~~~~~~i~~Fi~ 373 (408)
|++....+.+++.... +.+..+|+.++ +.+...||. ..|++.+.+..+ ....+.+.++.+.|.+|++
T Consensus 13 C~~a~~~L~~~~~~~~-----~~l~~vDI~~d---~~l~~~Y~~---~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 13 CDEAKEILEEVAAEFP-----FELEEVDIDED---PELFEKYGY---RIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHHHCCTTST-----CEEEEEETTTT---HHHHHHSCT---STSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-----ceEEEEECCCC---HHHHHHhcC---CCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 6777666666544443 77888998864 467788887 368988876311 1333466789999999985
No 354
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=76.87 E-value=37 Score=28.49 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=61.0
Q ss_pred CCcccccChhHHHHHhc-cCCeEEEEEecCCCCc----CHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEE
Q 015368 162 LGTYSITTTDEAERILT-VESKLVLGFLHDLEGM----ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (408)
Q Consensus 162 ~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~----~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~ 236 (408)
..+.+|+-.+-.....+ +...|||+......-+ ....+..+|.....++|..+........|--. ..|+|++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~---nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPES---NLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCCccc---CCCeEEE
Confidence 45667766665555554 4567777655443444 34445567766778889887665555555544 4899999
Q ss_pred eecCCCc-----ccccCCc-CCHHHHHHHHhc
Q 015368 237 LHLEAGK-----ATPFRHQ-FTRLAIANFVTH 262 (408)
Q Consensus 237 ~~~~~~~-----~~~y~g~-~~~~~i~~fi~~ 262 (408)
|..+.-. ...+.|. .+.+++..++-+
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9976522 2344444 566777777754
No 355
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=76.71 E-value=22 Score=24.55 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=40.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (408)
+..++.++|+.|++.+-.+.+. ++.+-.++++.. .++.+.-+-..+|++..-++| .. ......|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~~-----l~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-VQ-----MFESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-eE-----EEcHHHH
Confidence 3467778999999876554443 344444555432 233344455678987432234 21 2355677
Q ss_pred HHHHHhH
Q 015368 153 SAWVREK 159 (408)
Q Consensus 153 ~~~i~~~ 159 (408)
.+++.+.
T Consensus 70 ~~yL~~~ 76 (77)
T cd03041 70 VKYLFKT 76 (77)
T ss_pred HHHHHHh
Confidence 7777654
No 356
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=76.29 E-value=4.4 Score=30.51 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=42.2
Q ss_pred EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc
Q 015368 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (408)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~ 115 (408)
+++++.++-.--+|+++||-=-|+-|+.-. ....++++.++|+. ++.++..=|.+
T Consensus 8 ~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 8 DIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp BTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 344444433334788988888899999888 77899999999986 88888888864
No 357
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=76.29 E-value=23 Score=28.98 Aligned_cols=86 Identities=16% Similarity=0.313 Sum_probs=54.9
Q ss_pred cCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHH
Q 015368 71 GKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLA 120 (408)
Q Consensus 71 ~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~ 120 (408)
-.++.+++.||. .+--.|-.+.-.|...+.+++. +..++.+.||. +.++|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 356888888884 5555676677778888888877 66666666643 45788
Q ss_pred HHcCCC----cCc--EEEEEe-CCeEeEEe-----eCCCCHHHHHHHHH
Q 015368 121 KEYNIL----AYP--TLYLFV-AGVRQFQF-----FGERTRDVISAWVR 157 (408)
Q Consensus 121 ~~~~i~----~~P--t~~~~~-~g~~~~~~-----~g~~~~~~l~~~i~ 157 (408)
+.||+- |.+ .+++++ +| +..+. .-.++.++..+.++
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~g-i~R~it~NDlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDG-ILRQITINDLPVGRSVDETLRLVQ 158 (196)
T ss_pred HhcCceecCCCcceeeeEEEcccc-ceEEeeecccCCCccHHHHHHHHH
Confidence 999873 333 456665 66 33322 12366666655553
No 358
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.86 E-value=4.3 Score=30.71 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=34.1
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcCCCcCcEEEEEe-CC
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNILAYPTLYLFV-AG 137 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i~~~Pt~~~~~-~g 137 (408)
..|+.++|+.|++....+++- ++.|-.+|..+++ ++.+-.+..+.|.--+++ .|
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~ 60 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSG 60 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCC
Confidence 468899999999988666652 5777777765543 333333334455555565 44
No 359
>PHA02125 thioredoxin-like protein
Probab=75.07 E-value=7.3 Score=26.91 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=30.8
Q ss_pred EEEEecCCCCcCHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEE
Q 015368 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (408)
Q Consensus 184 vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~ 235 (408)
++.|+.+||.++...-..+.+. .+.+..+ ...+++++|++. +.|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~~l~~~~~v~---~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGVELTAKHHIR---SLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCHHHHHHcCCc---eeCeEE
Confidence 5679999999865432222222 1233333 467899999998 589987
No 360
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=74.92 E-value=35 Score=26.09 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=55.9
Q ss_pred cCCCcEEEEEecC--CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc-cc-----------HhHHHHcCCCc-CcEEEEE
Q 015368 71 GKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LE-----------KDLAKEYNILA-YPTLYLF 134 (408)
Q Consensus 71 ~~~~~~~v~f~a~--wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-~~-----------~~~~~~~~i~~-~Pt~~~~ 134 (408)
.++++++| | || .-+.-++....+.+....+.. ++.++.+--+ .. ..+.++|++.. .-+++++
T Consensus 8 w~~R~lvv-~-aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLi 85 (118)
T PF13778_consen 8 WKNRLLVV-F-APSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLI 85 (118)
T ss_pred CcCceEEE-E-CCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEE
Confidence 34444443 4 44 445566667777775666655 6666666322 22 26778888653 2345555
Q ss_pred e-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 135 V-AGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 135 ~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
. +|.+..++.++.+.+.|.+.|...
T Consensus 86 GKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 86 GKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred eCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 4 898889999999999999888643
No 361
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=73.30 E-value=30 Score=30.28 Aligned_cols=92 Identities=8% Similarity=-0.050 Sum_probs=54.9
Q ss_pred CccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC-------c--ccccchh-hhccCCC---------
Q 015368 283 PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS-------E--GVGRRVS-QEFGVSG--------- 341 (408)
Q Consensus 283 ~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~-------~--~~~~~l~-~~~~i~~--------- 341 (408)
+.++ +.++..||. +......|+++.++++++ ++.++-++++. . + ...++ +.+|++-
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~e-i~~f~~~~~g~~fPvl~~~D~~ 175 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPE-IKQFACTRFKAEFPIFDKVDVN 175 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHH-HHHHHHHhcCCCCccccccCCC
Confidence 3444 445667776 777888999999999864 27777776531 0 1 11221 2222210
Q ss_pred -----------------------CCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhc
Q 015368 342 -----------------------NAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 342 -----------------------~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~ 377 (408)
...|..++++.+| ..+.+.|..+.++|++.|+.+++
T Consensus 176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 0024556666644 34456777888889888888775
No 362
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=73.21 E-value=23 Score=24.44 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=46.7
Q ss_pred EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCC-CCChHH
Q 015368 290 FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG-ELTLSS 367 (408)
Q Consensus 290 f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~-~~~~~~ 367 (408)
+.+.+. |......+++++.++. +.+-..|..+ .+++ ..+|+. ..|++++. |+ ..+.| ..+.++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~---~~~~-~~ygv~--~vPalvIn---g~-~~~~G~~p~~~e 70 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIED---FEEI-EKYGVM--SVPALVIN---GK-VVFVGRVPSKEE 70 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTT---HHHH-HHTT-S--SSSEEEET---TE-EEEESS--HHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccC---HHHH-HHcCCC--CCCEEEEC---CE-EEEEecCCCHHH
Confidence 666665 8888888999999884 5667777644 3355 889994 47899773 32 33456 777888
Q ss_pred HHHHHH
Q 015368 368 IKSFGE 373 (408)
Q Consensus 368 i~~Fi~ 373 (408)
+.+||+
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 363
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=73.15 E-value=11 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=31.5
Q ss_pred EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH--hHHHHcCCCcCcEEEE
Q 015368 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DLAKEYNILAYPTLYL 133 (408)
Q Consensus 79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~--~~~~~~~i~~~Pt~~~ 133 (408)
.|+.++|+.|++..-.++...- .+....++..... ++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778999999987766555421 3445555543322 2445566778897753
No 364
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=73.04 E-value=16 Score=24.60 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=34.2
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----cHhHHHHcCCCcCcEEEEEeCC
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAG 137 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~~g 137 (408)
..|+.++|+.|++.+-.+....- .+....++... .+++.+......+|++.. .+|
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~ 60 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDG 60 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCC
Confidence 46788999999998766555422 34445555422 344555556667899854 344
No 365
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=72.66 E-value=6.9 Score=30.65 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=24.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~ 117 (408)
+..|+.++|+.|++....+++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568899999999977555442 5677777766543
No 366
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=72.37 E-value=3.7 Score=30.76 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=23.7
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (408)
..|+.|+|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999987666542 466666666544
No 367
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=69.12 E-value=8.1 Score=33.24 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=36.9
Q ss_pred cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC----CcEEEEEeCc
Q 015368 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (408)
Q Consensus 71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~----~v~~~~v~~~ 114 (408)
..|++++|-+-..+|..|..-+..++.|..++.. +|.|+.||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3578899989899999999999999999888754 7888888843
No 368
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=68.64 E-value=20 Score=28.01 Aligned_cols=26 Identities=4% Similarity=-0.192 Sum_probs=19.1
Q ss_pred HHHHhccCCeEEEEEecCCCCcCHHH
Q 015368 173 AERILTVESKLVLGFLHDLEGMESEE 198 (408)
Q Consensus 173 ~~~~~~~~~~~vi~f~~~~~~~~~~~ 198 (408)
++...+.+++++|.|+.+||..+...
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l 41 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQAL 41 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHH
Confidence 44445668889999999999885443
No 369
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=68.42 E-value=17 Score=24.49 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=36.1
Q ss_pred EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHH
Q 015368 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (408)
Q Consensus 79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (408)
+++.++|++|++.+-.+....- .+....++........+..+-..+|++.. ++|.. -.....|.+|+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 5778999999987655544321 33334444333333333444456888732 33522 124455666653
No 370
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=68.41 E-value=20 Score=30.33 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=62.8
Q ss_pred CcccccChhHHHHHhccC---CeEEEEEecC---CCCcCHHHHHHHhccCCceeEEEecC--HhHHhhcCCCCCCCCCeE
Q 015368 163 GTYSITTTDEAERILTVE---SKLVLGFLHD---LEGMESEELAAASKLHSDVNFYQTTS--ADVAEFFHIHPKSKRPAL 234 (408)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~---~~~vi~f~~~---~~~~~~~~~~~~a~~~~~~~f~~~~~--~~l~~~~~i~~~~~~p~l 234 (408)
.+.++.+..++-+.++.. ..++|..|.+ .|+.....+.-+|.-...++|..+++ .....+|... +.|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n---~lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLN---VLPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhccc---CCceE
Confidence 466788888888888653 2344445544 23334455555666677889987744 3456677776 58999
Q ss_pred EEeecCCC--ccc----ccCCcCCHHHHHHHHhcCCC
Q 015368 235 IFLHLEAG--KAT----PFRHQFTRLAIANFVTHTKH 265 (408)
Q Consensus 235 ~~~~~~~~--~~~----~y~g~~~~~~i~~fi~~~~~ 265 (408)
++|+.++- ..+ .+-.++...++..|++.+-+
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 99987641 111 12233566788889876543
No 371
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=68.07 E-value=20 Score=27.24 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (408)
Q Consensus 90 ~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (408)
.+.+.+..+.+.....-.. .+..-++.+.++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5566666665555431111 33334689999999999999999987
No 372
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.10 E-value=14 Score=31.84 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=34.5
Q ss_pred hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGT 164 (408)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (408)
..+++.||+++|++++ ++| ...+|..+.+.+..-|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHHhccc
Confidence 3578899999999988 333 456899999999999998886443
No 373
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=66.84 E-value=2.7 Score=29.78 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=42.5
Q ss_pred EecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368 80 FYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (408)
Q Consensus 80 f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (408)
|=+..-+.+......+..+.+.. .+.+.+-.||+.++++++..++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 33444456677778888887764 448999999999999999999999999875
No 374
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=66.30 E-value=31 Score=25.74 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=33.2
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEE-EcCCcccccchhhhccCC
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYV-EMNSEGVGRRVSQEFGVS 340 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~v-d~~~~~~~~~l~~~~~i~ 340 (408)
+.+.++ ++..||. |.+....++++++++.++ +.++.+ |.+..+ ...+++.+++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~~~~~~~-~~~~~~~~~~~ 77 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLASDGEKAE-HQRFLKKHGLE 77 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEeCCCHHH-HHHHHHHhCCC
Confidence 445544 4555676 888889999999888765 655544 222222 33456666663
No 375
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=65.67 E-value=10 Score=34.42 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=52.8
Q ss_pred ChhHHhhhHHHHHHH----HHhcC---CcEEEEEeCcccH---hHHHHcCCCc--CcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368 85 CYWSKKLAPEFAAAA----KMLKG---EADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFFGERTRDVI 152 (408)
Q Consensus 85 C~~C~~~~p~~~~~~----~~~~~---~v~~~~v~~~~~~---~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (408)
||.|-+..-.+.+.. +.+.. .+.++.+-|--|. ..-..+||.+ -|...+|.+|+.+.+..++.-.+++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 788876654444433 33333 5788888886542 2234567764 5899999999989999888888888
Q ss_pred HHHHHhHh
Q 015368 153 SAWVREKM 160 (408)
Q Consensus 153 ~~~i~~~~ 160 (408)
...+++..
T Consensus 344 ~~~i~~~~ 351 (361)
T COG0821 344 EALIEAYA 351 (361)
T ss_pred HHHHHHHH
Confidence 88887665
No 376
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=64.27 E-value=39 Score=22.40 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=40.3
Q ss_pred EEEEecCCCCcCHHHHHHHhccCCceeEEEe---cCHh----HHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHH
Q 015368 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQT---TSAD----VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAI 256 (408)
Q Consensus 184 vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~---~~~~----l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i 256 (408)
+.+|+.++|..+......+... ++.+..+ .+.. +.+.+++. +.|++++. + . ...| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--~i~~~~vdi~~~~~~~~~~~~~~~~~---~vP~~~~~---~-~--~~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--GIAFEEIDVEKDSAAREEVLKVLGQR---GVPVIVIG---H-K--IIVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--CCeEEEEeccCCHHHHHHHHHHhCCC---cccEEEEC---C-E--EEee-CCHHHH
Confidence 4568889999877665554433 2333332 2322 44567776 58999864 1 2 2555 477888
Q ss_pred HHHHh
Q 015368 257 ANFVT 261 (408)
Q Consensus 257 ~~fi~ 261 (408)
.+|++
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88874
No 377
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=63.73 E-value=18 Score=25.96 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=28.4
Q ss_pred EEEEeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCc
Q 015368 287 LWLFAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSE 327 (408)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~ 327 (408)
+.+++.++. |.+..+.+.++.++++ ++ +.|+.+..++.
T Consensus 6 l~fwa~~c~~c~~~~~~l~~l~~~~~~~~~---v~~v~Vs~d~~ 46 (95)
T PF13905_consen 6 LYFWASWCPPCKKELPKLKELYKKYKKKDD---VEFVFVSLDED 46 (95)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTTT---EEEEEEE-SSS
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCC---EEEEEEEeCCC
Confidence 344555665 8899999999999999 55 99999888764
No 378
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=63.64 E-value=8.1 Score=23.61 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=11.0
Q ss_pred CCchhhhHHHHHHHHHHH
Q 015368 1 MEKTKTLLLLLTSSIILF 18 (408)
Q Consensus 1 M~~~~~~~~l~~~~~l~~ 18 (408)
|||.+|++++.+.++.++
T Consensus 1 ~kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLL 18 (47)
T ss_pred CceeeehHHHHHHHHHHH
Confidence 888888666554444433
No 379
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=63.43 E-value=64 Score=24.56 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccc----cCCCCCChHHHHHHHHHHhcC
Q 015368 305 EVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKY----VLNGELTLSSIKSFGEEFLED 378 (408)
Q Consensus 305 ~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y----~~~~~~~~~~i~~Fi~~~~~g 378 (408)
++.+-.+.+ +.+.-.|....+ +.++...+++. ..|.+++...++... .+.|..+++++..-++.+.+.
T Consensus 44 ~v~~~ln~~---fv~w~~dv~~~e-g~~la~~l~~~--~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 44 EVIEYINTR---MLFWACSVAKPE-GYRVSQALRER--TYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred HHHHHHHcC---EEEEEEecCChH-HHHHHHHhCCC--CCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 455555666 888888988766 67788888885 468888876533333 468999999998888877653
No 380
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=63.41 E-value=14 Score=25.98 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=22.9
Q ss_pred cCcEEEEEe-CCeEeEEee-CCCCHHHHHHHHHhHh
Q 015368 127 AYPTLYLFV-AGVRQFQFF-GERTRDVISAWVREKM 160 (408)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~-g~~~~~~l~~~i~~~~ 160 (408)
.-|++.+++ +|+++.+.+ ..++.+.+.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 359999999 887666654 6689999999998754
No 381
>PTZ00056 glutathione peroxidase; Provisional
Probab=61.99 E-value=55 Score=27.70 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=55.4
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC--------cccccchhhhccCCCC----------
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS--------EGVGRRVSQEFGVSGN---------- 342 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~--------~~~~~~l~~~~~i~~~---------- 342 (408)
+.++++ +...||. |......+.++.+++.++ ++.++-++++. .+-...+++.+|++-.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 334444 4445665 777788899999998754 27777776421 1112233444443100
Q ss_pred ------------------------CC---cEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCcc
Q 015368 343 ------------------------AP---RVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDKL 380 (408)
Q Consensus 343 ------------------------~~---p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk~ 380 (408)
.. |..++++.+|+ .+.+.|..+.+.+.+.|+.+++.+-
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~ 182 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKD 182 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00 13455555443 3445677788889999998887743
No 382
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=60.96 E-value=21 Score=27.13 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=24.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (408)
+..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467889999999987766652 466667776544
No 383
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=59.91 E-value=43 Score=22.53 Aligned_cols=51 Identities=18% Similarity=0.069 Sum_probs=32.2
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----cHhHHHHcCCCcCcEEE
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLY 132 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~ 132 (408)
..|+.++|+.|++.+-.+... +-.+....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468899999999766554443 2245555555432 24566665666789985
No 384
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.97 E-value=14 Score=25.04 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=40.2
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
..|+.++|+.|++..-.++...- .+....++.... +++.+......+|++. .+|.. ......|.+++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 46788999999998655543322 344444554332 3455555566789663 44522 13456677776
Q ss_pred Hh
Q 015368 157 RE 158 (408)
Q Consensus 157 ~~ 158 (408)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 385
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.94 E-value=74 Score=28.71 Aligned_cols=157 Identities=14% Similarity=0.048 Sum_probs=84.9
Q ss_pred CcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHh----ccCC-eEEEEE
Q 015368 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVES-KLVLGF 187 (408)
Q Consensus 113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~-~~vi~f 187 (408)
|+-.+++.++++|...|--+.+++. ... -....+.+++..-+...-..+-+.-.+..++.+.. +.+. .++...
T Consensus 11 ~dl~~~~~~~~~I~vlPL~V~~~g~-~y~-D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i~ 88 (282)
T COG1307 11 ADLPPELAEKLDITVLPLSVIIDGE-SYF-DGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKGYDEVISIH 88 (282)
T ss_pred CCCCHHHHHhCCeEEEeEEEEECCE-Eee-ccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEEE
Confidence 5667889999999999999888754 222 22346777655444444333333444555554433 3333 455545
Q ss_pred ecCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCc
Q 015368 188 LHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL 267 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~ 267 (408)
.++.-+..++.-..++++..+..+..+.+..+....+.. +.+. ....-+|. +.+++.+|+++.....
T Consensus 89 iSs~LSgty~~a~~a~~~~~~~~v~viDS~~~s~~~g~~---------v~~a---~~l~~~G~-s~~ei~~~l~~~~~~t 155 (282)
T COG1307 89 ISSGLSGTYQSAQLAAELVEGAKVHVIDSKSVSMGLGFL---------VLEA---AELAKAGK-SFEEILKKLEEIREKT 155 (282)
T ss_pred cCCCccHHHHHHHHHHHhccCceEEEEcCcchhhHHHHH---------HHHH---HHHHHcCC-CHHHHHHHHHHHHhhc
Confidence 555555566663334466655444444333222222111 0000 01111233 4788888888877776
Q ss_pred eEeeccccccccccCCc
Q 015368 268 VVTLTIHNAQFVFQDPR 284 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~ 284 (408)
...+.-+++..+...++
T Consensus 156 ~~~~~v~~L~~L~kgGR 172 (282)
T COG1307 156 KAYFVVDDLDNLVKGGR 172 (282)
T ss_pred EEEEEECchhHHHhCCC
Confidence 66666666666655544
No 386
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=58.01 E-value=1.4e+02 Score=26.62 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCCcEEcChhhHHHHHcCCCcEEEEEecCCC-hh-HHhhhHHHHHHHHHh----cCCcEEEEEeCcccHhHHHH----cC
Q 015368 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWC-YW-SKKLAPEFAAAAKML----KGEADLVMVDAYLEKDLAKE----YN 124 (408)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC-~~-C~~~~p~~~~~~~~~----~~~v~~~~v~~~~~~~~~~~----~~ 124 (408)
.....+|++.+-+-+-.=.+++-|.+|.+-- +. -....+.+.++-++| ++++.+-.||.+.+++.+++ +|
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 3455667777666544445677777776641 11 233344444444443 33899999999777766665 88
Q ss_pred CCcC
Q 015368 125 ILAY 128 (408)
Q Consensus 125 i~~~ 128 (408)
|...
T Consensus 86 i~~~ 89 (271)
T PF09822_consen 86 IQPV 89 (271)
T ss_pred CCcc
Confidence 8763
No 387
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.50 E-value=15 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=25.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcC
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 104 (408)
+..|+.+.||.|-...+.+.++.+.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678899999999999999999999843
No 388
>PRK12559 transcriptional regulator Spx; Provisional
Probab=56.86 E-value=13 Score=29.10 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=23.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (408)
+..|..++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4578899999999977555442 466666666544
No 389
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=56.70 E-value=15 Score=30.94 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=27.9
Q ss_pred cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
+.+.+.+.||.|+|++++ +|+ ....|..+.+.+.+-|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 345677899999999987 553 3467999998887654
No 390
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=55.63 E-value=65 Score=22.93 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=33.1
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-HhHHHHcCCCcCcEEEE
Q 015368 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYL 133 (408)
Q Consensus 76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~~ 133 (408)
.+..++.+.|+.|++..-.+... +-.+.+..++.... .++.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~----gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAK----NIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHc----CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 35556788899999875444432 11455556665443 33555556677898863
No 391
>PLN02412 probable glutathione peroxidase
Probab=54.96 E-value=79 Score=25.81 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=26.2
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEc
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEM 324 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~ 324 (408)
+.++++ ++..+|. +......++++.++|+++ ++.++-+.+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~ 70 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPC 70 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecc
Confidence 344444 4456766 565677888888888854 277766664
No 392
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=54.63 E-value=11 Score=34.63 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=45.9
Q ss_pred ChhHHhhhHHHHHHHHHh----cC---CcEEEEEeCcccHh---HHHHcCCC-cCc-EEEEEeCCeEeEEe-eCCCCHHH
Q 015368 85 CYWSKKLAPEFAAAAKML----KG---EADLVMVDAYLEKD---LAKEYNIL-AYP-TLYLFVAGVRQFQF-FGERTRDV 151 (408)
Q Consensus 85 C~~C~~~~p~~~~~~~~~----~~---~v~~~~v~~~~~~~---~~~~~~i~-~~P-t~~~~~~g~~~~~~-~g~~~~~~ 151 (408)
||.|-+..=.+.+++++. .+ .++++.+-|--|.. --..+|+. +-| ...+|++|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 666665554555555443 22 79999999976632 12357776 333 48888999988888 77777788
Q ss_pred HHHHHHhH
Q 015368 152 ISAWVREK 159 (408)
Q Consensus 152 l~~~i~~~ 159 (408)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88877764
No 393
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=53.88 E-value=78 Score=24.45 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=43.5
Q ss_pred cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE-EEEEc
Q 015368 285 KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV-IAYSA 351 (408)
Q Consensus 285 ~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~-i~i~~ 351 (408)
.+++-|-.+.| |-+.-..|.++|.+.++- .....+|.++ .+.+.+.|+++. +|. +.+++
T Consensus 25 lvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide---V~~~~~~~~l~~--p~tvmfFfn 86 (142)
T KOG3414|consen 25 LVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE---VPDFVKMYELYD--PPTVMFFFN 86 (142)
T ss_pred EEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch---hhhhhhhhcccC--CceEEEEEc
Confidence 45556766555 778888999999999987 8888889875 457789999953 444 44444
No 394
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.49 E-value=1.2e+02 Score=24.45 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=31.2
Q ss_pred cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHH
Q 015368 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (408)
Q Consensus 215 ~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~ 257 (408)
+..+|++.|+++ +.|++++|...+.......|-+..+.+.
T Consensus 103 s~~ELa~kf~vr---stPtfvFfdk~Gk~Il~lPGY~ppe~Fl 142 (182)
T COG2143 103 STEELAQKFAVR---STPTFVFFDKTGKTILELPGYMPPEQFL 142 (182)
T ss_pred cHHHHHHHhccc---cCceEEEEcCCCCEEEecCCCCCHHHHH
Confidence 446899999999 5899999988776777777877765443
No 395
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=52.01 E-value=1.1e+02 Score=23.83 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=39.7
Q ss_pred cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCC
Q 015368 285 KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS 340 (408)
Q Consensus 285 ~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~ 340 (408)
.+++-|-...+ |.+.-+.+.++|.+.++- ..+..+|.++ .+.+.+.|.+.
T Consensus 22 vvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~---Vpdfn~~yel~ 73 (133)
T PF02966_consen 22 VVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDE---VPDFNQMYELY 73 (133)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTT---THCCHHHTTS-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEccc---chhhhcccccC
Confidence 55666777665 778888999999999998 9999999875 45788889996
No 396
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=51.30 E-value=24 Score=29.35 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=26.2
Q ss_pred HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (408)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (408)
...+.+.||.|+|++++ +|+ .+.|....+.+...+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 34567899999999987 673 556887777776654
No 397
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=50.88 E-value=24 Score=26.62 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=39.9
Q ss_pred EecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCc--CcEEEE-EeCCeEeEEeeCC
Q 015368 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL-FVAGVRQFQFFGE 146 (408)
Q Consensus 80 f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~--~Pt~~~-~~~g~~~~~~~g~ 146 (408)
||-.+|+-|......+.+... .+.+.|+.+.-....++.+.+++.. .-+.+. ..+|+ ..|.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE--RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC--EEEEcH
Confidence 789999999999887777621 2367776664445555567777652 444444 35774 344554
No 398
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=50.66 E-value=90 Score=26.55 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=45.1
Q ss_pred CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368 84 WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (408)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (408)
.|+.|+++.-.+. .++ .+.+-.||....++-.++..-.+=|=++.|+ | .+..+.+.|+++|++.+++
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d-~------~~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFD-E------KWVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeC-C------ceeccHHHHHHHHHHhcCC
Confidence 5899998876666 222 6788889988777665554333333333443 2 2235778999999999865
Q ss_pred Cc
Q 015368 163 GT 164 (408)
Q Consensus 163 ~~ 164 (408)
+.
T Consensus 88 p~ 89 (221)
T KOG1422|consen 88 PK 89 (221)
T ss_pred CC
Confidence 54
No 399
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=50.54 E-value=2e+02 Score=28.95 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=47.8
Q ss_pred CccCCCcEEcChhhHHHHHcCCCcEEEEEecCCCh--hHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhH-------
Q 015368 52 LLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCY--WSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDL------- 119 (408)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~--~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~------- 119 (408)
+........|++.+-+-+-.=.+++-|.+|.+--. .-......+.++-++|+. ++.+-.+|-..+++.
T Consensus 26 DlT~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~ 105 (552)
T TIGR03521 26 DLTEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILD 105 (552)
T ss_pred ecCCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHH
Confidence 44556778888877765544467888877765421 123344445555555433 799999998776433
Q ss_pred -HHHcCCCcCc
Q 015368 120 -AKEYNILAYP 129 (408)
Q Consensus 120 -~~~~~i~~~P 129 (408)
+.++||...+
T Consensus 106 ~~~~~gi~~~~ 116 (552)
T TIGR03521 106 SLAQYGIKPAN 116 (552)
T ss_pred HHHHcCCCcce
Confidence 3457887554
No 400
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=49.25 E-value=66 Score=28.91 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=78.2
Q ss_pred cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeC-CCCHHHHHHHHHhHhCCCcccccChhHHHHHhc-----cCCeEEEEE
Q 015368 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVREKMTLGTYSITTTDEAERILT-----VESKLVLGF 187 (408)
Q Consensus 114 ~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-----~~~~~vi~f 187 (408)
+-.+++.++++|.-+|-.+.+++. . ..+| ..+.+++.+.+.+.-..+-+.-.+..++.+..+ ..+.++...
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~~~-~--y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~ 87 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIIDGK-E--YRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVIT 87 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEETTE-E--EETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCHHHHHhCCeEEEeEEEecCCe-E--EecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence 334678899999999999888752 2 2234 689999999996654433344446666554443 334355545
Q ss_pred ecCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCc
Q 015368 188 LHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL 267 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~ 267 (408)
.++.-+..+.....+++...+..+..+.+..+.-..+. ++.+. ....=.| .+.+++.++++..+.-.
T Consensus 88 iSs~LSgty~~a~~aa~~~~~~~i~ViDS~~~s~g~g~---------lv~~a---~~l~~~G-~s~~ei~~~l~~~~~~~ 154 (280)
T PF02645_consen 88 ISSGLSGTYNSARLAAKMLPDIKIHVIDSKSVSAGQGL---------LVLEA---AKLIEQG-KSFEEIVEKLEELRERT 154 (280)
T ss_dssp S-TTT-THHHHHHHHHHHHTTTEEEEEE-SS-HHHHHH---------HHHHH---HHHHHTT---HHHHHHHHHHHHHTE
T ss_pred CCcchhhHHHHHHHHHhhcCcCEEEEEeCCCcchhhhH---------HHHHH---HHHHHcC-CCHHHHHHHHHHHHhhc
Confidence 55555667777776664333344444322221111110 00000 0001122 36788888888766666
Q ss_pred eEeeccccccccccCCc
Q 015368 268 VVTLTIHNAQFVFQDPR 284 (408)
Q Consensus 268 v~~lt~~~~~~~~~~~~ 284 (408)
...+..+++..+...++
T Consensus 155 ~~~f~~~~L~~L~kgGR 171 (280)
T PF02645_consen 155 RTYFVVDDLKYLRKGGR 171 (280)
T ss_dssp EEEEEES-SHHHHHCTS
T ss_pred eEEEEechHHHHHHCCC
Confidence 66666666666555444
No 401
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=47.30 E-value=22 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=23.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (408)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 3467889999999976555431 566777776544
No 402
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=46.55 E-value=1.1e+02 Score=23.64 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=31.9
Q ss_pred CcEEEEEeCcccHh----------HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 105 EADLVMVDAYLEKD----------LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 105 ~v~~~~v~~~~~~~----------~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
++.+.+-|...++. +-++-|....|-+++ ||+ +...-...+.++|.+|+.-..
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGe-iv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGE-IVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTE-EEEESS---HHHHHHHHT--G
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCE-EEEecCCCCHHHHHHHhCCCc
Confidence 89999999987653 335568889997754 884 444444568899999986444
No 403
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=44.59 E-value=72 Score=24.84 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=37.4
Q ss_pred ChhHHHHHhc-cCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecC
Q 015368 169 TTDEAERILT-VESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (408)
Q Consensus 169 ~~~~~~~~~~-~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~ 240 (408)
+.+....+.. ..+..++++..+||+.+. +.+..+++..+.+.+..+ .+.++.+.|--......|+++++..+
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3344444333 345567778999998744 445566666666665443 45566666644333468999999765
No 404
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=43.26 E-value=1.3e+02 Score=22.91 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=10.9
Q ss_pred CCeEEEEEecCCCCcCHH
Q 015368 180 ESKLVLGFLHDLEGMESE 197 (408)
Q Consensus 180 ~~~~vi~f~~~~~~~~~~ 197 (408)
.+++++.|+..||..+..
T Consensus 23 gk~vvl~F~a~~C~~C~~ 40 (126)
T cd03012 23 GKVVLLDFWTYCCINCLH 40 (126)
T ss_pred CCEEEEEEECCCCccHHH
Confidence 356666677777765433
No 405
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.81 E-value=18 Score=28.29 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.3
Q ss_pred hhhHHHHH
Q 015368 5 KTLLLLLT 12 (408)
Q Consensus 5 ~~~~~l~~ 12 (408)
|.++++++
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 44444333
No 406
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=40.20 E-value=15 Score=31.58 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=60.5
Q ss_pred ChhHHHHHhccCCeEEEEEecCCCCc---CHHHHHHHhc--cCCceeEE---EecCHhHHhhcCCCCCCCCCeEEEeecC
Q 015368 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASK--LHSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLE 240 (408)
Q Consensus 169 ~~~~~~~~~~~~~~~vi~f~~~~~~~---~~~~~~~~a~--~~~~~~f~---~~~~~~l~~~~~i~~~~~~p~l~~~~~~ 240 (408)
+++....++ ...+.+.|+.+||.. ....+...|. ..-.+..+ .+++..|.-+|-+.. .|+|.-.+
T Consensus 30 ~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta---LptIYHvk-- 102 (248)
T KOG0913|consen 30 DEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA---LPTIYHVK-- 102 (248)
T ss_pred cccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe---cceEEEee--
Confidence 334444443 234677788888765 3344444442 22223333 457788888888874 78776555
Q ss_pred CCcccccCCcCCHHHHHHHHhcCCCCceEe
Q 015368 241 AGKATPFRHQFTRLAIANFVTHTKHPLVVT 270 (408)
Q Consensus 241 ~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~ 270 (408)
++..-.|.|.++..++.+|+.......+..
T Consensus 103 DGeFrrysgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 103 DGEFRRYSGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred ccccccccCcccchhHHHHHHhhhhhccCC
Confidence 447889999999999999998766544433
No 407
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=38.77 E-value=76 Score=22.27 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=44.5
Q ss_pred EEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCccc-ccchhhhccCCCCCCcEEEEEccCCccccCCCCCC
Q 015368 288 WLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGV-GRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT 364 (408)
Q Consensus 288 i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~-~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~ 364 (408)
.+|. +++. |.+....|++++.++. . +.|..+|...... ...+....|......|.+++- ++.. . .
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~~-~---i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~---g~~i--g---g 71 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEERD-D---FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD---QKHI--G---G 71 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhccccc-C---CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC---CEEE--c---C
Confidence 3444 4555 8899999999988764 3 7888888765310 123444445422457888763 2221 1 2
Q ss_pred hHHHHHHHHHH
Q 015368 365 LSSIKSFGEEF 375 (408)
Q Consensus 365 ~~~i~~Fi~~~ 375 (408)
.++|.+++...
T Consensus 72 ~~~~~~~~~~~ 82 (85)
T PRK11200 72 CTDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHHh
Confidence 46666665543
No 408
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=38.09 E-value=72 Score=27.00 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=33.1
Q ss_pred cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (408)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (408)
++.+.++|+|+.+|++++...+ ......|..+...-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHHHHHHHHh
Confidence 6889999999999999997543 44567788888777766664
No 409
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.80 E-value=44 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=21.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc
Q 015368 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~ 115 (408)
+..|..|.|..|++....+++- ++.+-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 3467889999999876554432 45555555443
No 410
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.80 E-value=36 Score=24.25 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=3.9
Q ss_pred CCchhh
Q 015368 1 MEKTKT 6 (408)
Q Consensus 1 M~~~~~ 6 (408)
|+|.++
T Consensus 1 MKK~ki 6 (85)
T PF11337_consen 1 MKKKKI 6 (85)
T ss_pred CCchHH
Confidence 887444
No 411
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=36.51 E-value=35 Score=33.32 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=56.8
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHH-H--HHHHHHhcCCcEEEEEeCcccHhHHH--------HcCCCcCc
Q 015368 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYP 129 (408)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~P 129 (408)
-..+.|+++-.++||+++-.--+.|..|.-+..+ | ++.++.+..++.-++||-++.+++-+ ..|-.|.|
T Consensus 100 wgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred chHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 3457788888999999999988999999877653 3 33666666677778888887777654 34667889
Q ss_pred EEEEEe
Q 015368 130 TLYLFV 135 (408)
Q Consensus 130 t~~~~~ 135 (408)
--+++.
T Consensus 180 msV~LT 185 (786)
T KOG2244|consen 180 MSVFLT 185 (786)
T ss_pred eeEEeC
Confidence 888775
No 412
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=36.46 E-value=48 Score=30.67 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=44.2
Q ss_pred CCChhHHhhhH-HHHHHHHHhcC---CcEEEEEeCc-ccH--hHHHHcCCCcC-cEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368 83 NWCYWSKKLAP-EFAAAAKMLKG---EADLVMVDAY-LEK--DLAKEYNILAY-PTLYLFVAGVRQFQFFGERTRDVISA 154 (408)
Q Consensus 83 ~wC~~C~~~~p-~~~~~~~~~~~---~v~~~~v~~~-~~~--~~~~~~~i~~~-Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (408)
|.|+.|+.-.- ...++.+.+.+ .++++..-|- ..+ .-...+||.+- +...+|.+|+.+.+..+..-.+.+.+
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~ 351 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA 351 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence 33555443322 22334444544 6888888885 222 23456787754 55777789988888776655555555
Q ss_pred HHHh
Q 015368 155 WVRE 158 (408)
Q Consensus 155 ~i~~ 158 (408)
-|.+
T Consensus 352 ~i~~ 355 (360)
T PRK00366 352 EIEA 355 (360)
T ss_pred HHHH
Confidence 5543
No 413
>PTZ00256 glutathione peroxidase; Provisional
Probab=35.65 E-value=2.5e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=24.5
Q ss_pred EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEc
Q 015368 290 FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEM 324 (408)
Q Consensus 290 f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~ 324 (408)
+..||. |.+..+.++++.++|+++ ++.++-+++
T Consensus 49 ~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~ 82 (183)
T PTZ00256 49 VACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPC 82 (183)
T ss_pred ECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEec
Confidence 556666 888888999999999754 277777754
No 414
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=35.45 E-value=27 Score=31.93 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=40.1
Q ss_pred CcEEEEEecCCChhHHhh-hHHHHHHHHHhc---CCcEEEEEeCcccH---hHHHHcCCCc--CcEEEEEeCCeEeEEee
Q 015368 74 RNVMVMFYANWCYWSKKL-APEFAAAAKMLK---GEADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFF 144 (408)
Q Consensus 74 ~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~---~~v~~~~v~~~~~~---~~~~~~~i~~--~Pt~~~~~~g~~~~~~~ 144 (408)
.+-+| -=|.|+.|.-- .....++.+.+. ..++++.+-|.-|. .-...+||.+ .-...+|++|+.+.+..
T Consensus 256 g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~ 333 (346)
T TIGR00612 256 GVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQP 333 (346)
T ss_pred CCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecC
Confidence 34444 34666655422 222233333333 37999999887652 1234577764 34678889997766665
Q ss_pred CC
Q 015368 145 GE 146 (408)
Q Consensus 145 g~ 146 (408)
+.
T Consensus 334 ~~ 335 (346)
T TIGR00612 334 ET 335 (346)
T ss_pred HH
Confidence 43
No 415
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.33 E-value=43 Score=27.85 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=17.9
Q ss_pred HhHHHHcCCCcCcEEEEEeCCe
Q 015368 117 KDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
...+.++||.|+||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3456789999999999998664
No 416
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=34.89 E-value=1.3e+02 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=28.9
Q ss_pred cHhHHHHcCCCcC-cEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368 116 EKDLAKEYNILAY-PTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (408)
Q Consensus 116 ~~~~~~~~~i~~~-Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (408)
+..+.+.++...- -.+++++ +|++.....|.++.+++.+.+.
T Consensus 112 ~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 112 NGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred CCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 3334444444432 3566666 8988888899999999988875
No 417
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=34.33 E-value=2.4e+02 Score=22.51 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=29.5
Q ss_pred CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCC-----cceEEEEEEEcCCc
Q 015368 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGK-----VNMLLHVYVEMNSE 327 (408)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~-----~~~i~f~~vd~~~~ 327 (408)
+.++++ +.++||. |.+..+.+.++.++++++ .+++.++.++.+..
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~ 76 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQS 76 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCC
Confidence 334444 5556676 899999999888776532 12378888876643
No 418
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=33.32 E-value=46 Score=22.40 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=27.0
Q ss_pred cCCccccCCCCCChHHHHHHHHHHhcCcc-cc
Q 015368 352 RDAKKYVLNGELTLSSIKSFGEEFLEDKL-LN 382 (408)
Q Consensus 352 ~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~-~~ 382 (408)
.+++.+.+.+..+.+++.+-|+.+=+|-| |.
T Consensus 41 ~~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 41 LGRKPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred cCCCCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 35677889999999999999999999988 54
No 419
>PHA02291 hypothetical protein
Probab=32.68 E-value=45 Score=24.52 Aligned_cols=23 Identities=13% Similarity=0.478 Sum_probs=14.1
Q ss_pred CCchhhhHHHHHHHHHHHHhhcc
Q 015368 1 MEKTKTLLLLLTSSIILFKLYLF 23 (408)
Q Consensus 1 M~~~~~~~~l~~~~~l~~~~~~~ 23 (408)
|..+.+++.+++.++|++++++.
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY 23 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSY 23 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666655543
No 420
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=31.48 E-value=36 Score=27.57 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=22.4
Q ss_pred cCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc
Q 015368 71 GKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY 114 (408)
Q Consensus 71 ~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~ 114 (408)
..+++++++||.. .-|-|-+..=-|..-+++++. ...++.+..|
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D 133 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD 133 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC
Confidence 4567899989842 223343333334333444433 4555555544
No 421
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=29.63 E-value=1.9e+02 Score=21.59 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCccEEEEEeeC--CC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc
Q 015368 282 DPRKQLWLFAPA--YG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE 327 (408)
Q Consensus 282 ~~~~~~i~f~~~--~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~ 327 (408)
.+.+.++.|... +. |......+.++..+++.+ ++.++.+..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccc
Confidence 345777766655 33 788888899999888853 288888877654
No 422
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=29.07 E-value=1.4e+02 Score=23.29 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=40.4
Q ss_pred ccEEEEEe--eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCcccc
Q 015368 284 RKQLWLFA--PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV 358 (408)
Q Consensus 284 ~~~~i~f~--~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~ 358 (408)
.+.+++|. .+|. |......+.++..++... ++.++-+..+...-...+.+..++ +.-++.+.++..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~~~~~~~~~~~~~-----~~p~~~D~~~~~~~ 94 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESPEKLEAFDKGKFL-----PFPVYADPDRKLYR 94 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCHHHHHHHHHhcCC-----CCeEEECCchhHHH
Confidence 35555554 4666 889999999999999743 288888876654311123333333 34456666554443
No 423
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=28.82 E-value=1.9e+02 Score=19.57 Aligned_cols=55 Identities=16% Similarity=0.021 Sum_probs=33.7
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----cHhHHHHcCCCcCcEEEEEeCCe
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAGV 138 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~~g~ 138 (408)
..|+.+.|+.|++.+-.+.+ .+-.+.+..++... .+++.+.-.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e----~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAE----KGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHH----cCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 46788889999877633332 22256667776532 23455555566789885 4663
No 424
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.12 E-value=1.3e+02 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=10.9
Q ss_pred CCchhhhHHHHHHHHHHHHhhc
Q 015368 1 MEKTKTLLLLLTSSIILFKLYL 22 (408)
Q Consensus 1 M~~~~~~~~l~~~~~l~~~~~~ 22 (408)
|..+|.+++|+++++++.+++.
T Consensus 2 ~~~Rw~~~ILll~a~~~~~w~~ 23 (188)
T COG3117 2 MSRRWVYLILLLAALALSGWLL 23 (188)
T ss_pred cchhHHHHHHHHHHHHHHHHhh
Confidence 4455554555545444444444
No 425
>PRK13617 psbV cytochrome c-550; Provisional
Probab=27.92 E-value=33 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=19.9
Q ss_pred CCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHh
Q 015368 51 PLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK 90 (408)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~ 90 (408)
|.......+.++.+++.. ++-+ | ...|..|+.
T Consensus 44 ~~~~~g~~~~~s~~~~~~----G~~~---F-~~~C~~CH~ 75 (170)
T PRK13617 44 PADPSGSQVTFSESEIKA----GRKV---F-NTSCGTCHA 75 (170)
T ss_pred ecCCCCCeEEeCHHHHHH----HHHH---H-Hcchhhhcc
Confidence 334455667777776543 3323 3 888999984
No 426
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=27.20 E-value=23 Score=27.52 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=41.2
Q ss_pred CChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCC----cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
-|+||++..|.+.-.- .-+|.+.|.- ..=.++-+..|+......| +|-+++
T Consensus 11 ~CPhCRQ~ipALtLTD-----------------tYLC~rHGaFEAdP~t~eLVHLqSgR~Wr~W~g--------~WYRQH 65 (163)
T TIGR02652 11 RCPHCRQNIPALTLTD-----------------TYLCNRHGAFEADPETGELVHLQSGRRWRLWEG--------QWYRQH 65 (163)
T ss_pred cCchhhcccchheecc-----------------eeeccCCCccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 5999999998764221 1234444432 1234666667766666666 477788
Q ss_pred hCCCcccccChhHHHHHhc
Q 015368 160 MTLGTYSITTTDEAERILT 178 (408)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~ 178 (408)
+.+.=..+.=.+.++.+-.
T Consensus 66 thpDGiRfEIheaLDrLyt 84 (163)
T TIGR02652 66 THPDGIRFEIHEALDRLFT 84 (163)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 7666544444455665543
No 427
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=27.12 E-value=23 Score=27.52 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=40.7
Q ss_pred CChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCC----cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (408)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (408)
.|+||++..|.+.-.- .-+|.+.|.- ..=.++-+..|+......| +|-.++
T Consensus 8 ~CPhCRq~ipALtLTD-----------------tYLC~rHGaFEAdp~t~eLVHLqSgR~Wr~W~~--------~WyrQH 62 (161)
T PF09654_consen 8 QCPHCRQTIPALTLTD-----------------TYLCPRHGAFEADPKTGELVHLQSGRHWRLWEG--------EWYRQH 62 (161)
T ss_pred cCchhhcccchheecc-----------------eeeccCccccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 5999999998764221 1234444332 1234566667766666666 477788
Q ss_pred hCCCcccccChhHHHHHhc
Q 015368 160 MTLGTYSITTTDEAERILT 178 (408)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~ 178 (408)
+.+.=..+.=.+.++.+-.
T Consensus 63 thpDGiRfEIheaLDrLyt 81 (161)
T PF09654_consen 63 THPDGIRFEIHEALDRLYT 81 (161)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 7666555444455665553
No 428
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=26.29 E-value=2.5e+02 Score=20.31 Aligned_cols=62 Identities=8% Similarity=0.107 Sum_probs=32.0
Q ss_pred HHHHHhcCCcceEEEEEEEcCCccc---ccchhhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHH
Q 015368 305 EVAKALKGKVNMLLHVYVEMNSEGV---GRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFG 372 (408)
Q Consensus 305 ~vA~~~~~~~~~i~f~~vd~~~~~~---~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi 372 (408)
.+.+||.+.+ +.|.++|..+..- .+.+.+..--+.-.-|++++.+. +.=+|......|-+++
T Consensus 28 al~RKyp~~~--f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~e----iV~EGnp~LK~I~~~~ 92 (93)
T PF07315_consen 28 ALKRKYPDQP--FEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDE----IVAEGNPQLKDIYEEM 92 (93)
T ss_dssp HHHHH-TTS---EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTE----EEEESS--HHHHHHHH
T ss_pred HHhCcCCCCc--eEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCE----EEecCCccHHHHHHhh
Confidence 4677888754 9999999987631 12344443333444588887543 2224444455555554
No 429
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.28 E-value=1.2e+02 Score=21.83 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=11.3
Q ss_pred CCcEEEEEecCCChhHHhhhHHHHHHHHHh
Q 015368 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKML 102 (408)
Q Consensus 73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~ 102 (408)
.+||+=-+|- ||.-+...-+-.+....
T Consensus 51 Y~PWf~PlwE---PpsGEiESlLFaLQAai 77 (91)
T TIGR01165 51 YKPWFSPLWE---PPSGEIESLLFALQAAL 77 (91)
T ss_pred Cccccccccc---CCcchHHHHHHHHHHHh
Confidence 3454433333 34444444444444333
No 430
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=26.18 E-value=2e+02 Score=23.33 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=37.7
Q ss_pred EEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCccccCCCCCChHHHHHHHHHHhc
Q 015368 318 LHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLE 377 (408)
Q Consensus 318 ~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~~~~~~~~~~i~~Fi~~~~~ 377 (408)
.-+++|.++ -+...+++.+. -.++++.+. +.-.|.-+|.++++++.+++.=+.+
T Consensus 105 s~~vlD~~G-----~~~~aW~L~~~-~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 105 SQFVLDSNG-----VVRKAWQLQEE-SSAIIVLDKQGKVQFVKEGALSPAEVQQVIALLKK 159 (160)
T ss_pred cEEEEcCCC-----ceeccccCCCC-CceEEEEcCCccEEEEECCCCCHHHHHHHHHHHhc
Confidence 345667543 34567777654 346777777 5557777999999999999876654
No 431
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.89 E-value=1.6e+02 Score=21.28 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHHHhcCCcceEEEEEEEcCCcc---cccchhhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368 306 VAKALKGKVNMLLHVYVEMNSEG---VGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEE 374 (408)
Q Consensus 306 vA~~~~~~~~~i~f~~vd~~~~~---~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~ 374 (408)
+.++|.+.| +.+.++|+.+.. ....+.+..--+.-.-|++++-+ .+.-+|.....+|-+++++
T Consensus 36 lkRKyp~~~--F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved----eiVaeGnprlKdiy~~m~d 101 (106)
T COG4837 36 LKRKYPNQP--FKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED----EIVAEGNPRLKDIYRVMDD 101 (106)
T ss_pred HhccCCCCC--cEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc----eEeecCCchHHHHHHHHHH
Confidence 445677655 999999996542 12223333333344458888755 3444565666667666655
No 432
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.65 E-value=91 Score=23.85 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.6
Q ss_pred EEEEecCCChhHHhhhHHHHH
Q 015368 77 MVMFYANWCYWSKKLAPEFAA 97 (408)
Q Consensus 77 ~v~f~a~wC~~C~~~~p~~~~ 97 (408)
+-.|+.|.|..|+.....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 556889999999998766654
No 433
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=25.56 E-value=3.4e+02 Score=21.46 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=27.3
Q ss_pred CccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEc
Q 015368 283 PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEM 324 (408)
Q Consensus 283 ~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~ 324 (408)
++++ +.++.++|. +....+.+.+++++++.+ ++.+.-+++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEec
Confidence 3443 445556676 778888888999999753 277777764
No 434
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=94 Score=28.61 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=44.4
Q ss_pred cEEEEEeCcccHhHHHHcCCCcCcEEEEEe--CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368 106 ADLVMVDAYLEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVISAWVREKMT 161 (408)
Q Consensus 106 v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (408)
...+..|..+...+..-|.+...|.+.+++ .|+.+.+..|...++++..-+++.+.
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 444455666677888899999999999998 78888888898888888877777763
No 435
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=21.89 E-value=3.7e+02 Score=20.55 Aligned_cols=50 Identities=4% Similarity=0.081 Sum_probs=28.0
Q ss_pred ceeEEEecCHhHHhhcCCCCC------CCCCeEEEeecCCCcccccCCcCCHHHHH
Q 015368 208 DVNFYQTTSADVAEFFHIHPK------SKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (408)
Q Consensus 208 ~~~f~~~~~~~l~~~~~i~~~------~~~p~l~~~~~~~~~~~~y~g~~~~~~i~ 257 (408)
.+.+....+..+.+.|++... ...|+.+++.+.+.-...+.|....+++.
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 344444455677778887631 01177777776554455556655444443
No 436
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=21.77 E-value=3.2e+02 Score=19.77 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=18.2
Q ss_pred CcEEEEEeCcccHhHHHH----c----CCCcCcEEE
Q 015368 105 EADLVMVDAYLEKDLAKE----Y----NILAYPTLY 132 (408)
Q Consensus 105 ~v~~~~v~~~~~~~~~~~----~----~i~~~Pt~~ 132 (408)
+|.|-.+|++.+++..+. - +-...|.++
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF 65 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF 65 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE
Confidence 799999999876554322 1 335677765
No 437
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=21.18 E-value=4e+02 Score=20.65 Aligned_cols=46 Identities=4% Similarity=0.006 Sum_probs=28.2
Q ss_pred cCCceeEEEecCHhHHhhcCCCCC------CCCCeEEEeecCCCcccccCCc
Q 015368 205 LHSDVNFYQTTSADVAEFFHIHPK------SKRPALIFLHLEAGKATPFRHQ 250 (408)
Q Consensus 205 ~~~~~~f~~~~~~~l~~~~~i~~~------~~~p~l~~~~~~~~~~~~y~g~ 250 (408)
....+.+....+..+.+.+++.-. .+.|+.+++..++.-.....|.
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 444566666667788888886500 1379988888765333333444
No 438
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.99 E-value=98 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=21.9
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc
Q 015368 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (408)
Q Consensus 78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~ 115 (408)
..|+.+.|..|++....+++- ++.+-.+|.-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 467889999999986555442 45556666544
No 439
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.74 E-value=3.4e+02 Score=19.64 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=40.9
Q ss_pred cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368 82 ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (408)
Q Consensus 82 a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (408)
..+|+.|++.+=.+... +-...+..||....+ .+.+..-...+|++. .+|..+ .+...|.++|.+..
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~~ 86 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEETL 86 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHHc
Confidence 46799999876554433 114555666655544 444444456689654 455322 36678888888765
Q ss_pred CC
Q 015368 161 TL 162 (408)
Q Consensus 161 ~~ 162 (408)
.+
T Consensus 87 ~~ 88 (91)
T cd03061 87 CP 88 (91)
T ss_pred cC
Confidence 43
Done!