BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015370
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 317/413 (76%), Gaps = 16/413 (3%)
Query: 1 MAARSFFLGLR-RASNTK------IKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSD 53
MA RS F LR R +N I+N +S + S+ ++ ++ L EE S+
Sbjct: 1 MATRSLFHSLRCRLTNNGVLGSNFIRNAESSRF-----SKSYNADAAIGNSLVEE---SE 52
Query: 54 GKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEW 113
KDDLKSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EW
Sbjct: 53 EKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEW 112
Query: 114 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 173
MV H+E +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K T
Sbjct: 113 MVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQT 172
Query: 174 EKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
E+AE LF+R+ +S+ L+F A+ YNEMMTLYMSVGQVEKV V+E +K+K V PDIFTYNL
Sbjct: 173 ERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNL 232
Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
W+SSCAAT NID+++K L+EM D+ ++ WV+Y++L +IYI +S + NAES+ VEAEK
Sbjct: 233 WLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEK 292
Query: 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 352
SI+QR+WITYDFL+IL+ GLGNK IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E
Sbjct: 293 SISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLRE 352
Query: 353 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
EII QWK+S T++FD SAC R+L AF DVGL A+ FH++L+ C+ N
Sbjct: 353 AEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 211/369 (57%), Gaps = 4/369 (1%)
Query: 36 SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHIL 95
S G E +++ + G+D L R+ + KRSA I++W EG+ EL I+
Sbjct: 41 SGGGKGGESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIV 100
Query: 96 KELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK 155
+ELRK +RYKHALEI EWMV ++ L DYA +DL++K+ G++S E++FE +P +
Sbjct: 101 RELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMR 160
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
T+LLH Y K ++KAE LFE++ + + L YN M+++Y+S GQ EKV +++
Sbjct: 161 GHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLI 220
Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
+E+K + PDI TYNLW+++ A+ +++ +K + + + + DWV Y L N+Y
Sbjct: 221 KELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLK-AKEEKLNPDWVTYSVLTNLYAK 278
Query: 276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
++ A + L E EK ++++ + Y LI L+A LG+KD ++ WK ++ + +KM
Sbjct: 279 TDNVEKARLA-LKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDA 337
Query: 336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 395
Y+ ++S+ + LG ++ + D+W +S + D N +L + + +F+
Sbjct: 338 EYLSMISAVVKLGEFEQAKGLYDEW-ESVSGTGDARIPNLILAEYMNRDEVLLGEKFYER 396
Query: 396 LLQKNCAPT 404
+++K P+
Sbjct: 397 IVEKGINPS 405
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 193/362 (53%), Gaps = 11/362 (3%)
Query: 48 ETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHA 107
+TS+ ++ LK I R + P+RS T+++Q + G+ ++SELR I K L +S RY A
Sbjct: 31 DTSSVANRNSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLA 89
Query: 108 LEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL---PLSAKTSET-YTAL 163
L++ EWM K+ S D A R+DL+ K G+ GE YFE L +S + +++ Y L
Sbjct: 90 LQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPL 149
Query: 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 223
L Y K ++AE L E++ +NEMM LY + GQ EKV +VV +K +
Sbjct: 150 LRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKI 209
Query: 224 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283
++ +YNLW+++C + V+ EM D W L N+YI + E
Sbjct: 210 PRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGF---DE 266
Query: 284 SSTLV--EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 341
+ LV +AEK + + + Y FLI LYA LGNK+ + ++W+ + +++ NYIC+L
Sbjct: 267 KARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVL 326
Query: 342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401
SS + G L+E + +W ++ ++D+ N LLGA+ G KA H +L++
Sbjct: 327 SSLVKTGDLEEAERVFSEW-EAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGG 385
Query: 402 AP 403
P
Sbjct: 386 TP 387
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 178/303 (58%), Gaps = 3/303 (0%)
Query: 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG 149
E+ +K+LR Y AL++SE M + + SD A +DL+ K I +GE YF
Sbjct: 57 EVGDTIKKLRNRGLYYPALKLSEVM-EERGMNKTVSDQAIHLDLVAKAREITAGENYFVD 115
Query: 150 LPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 209
LP ++KT TY +LL+ Y TEKAE L ++K+ N++ +++ YN +MTLY G+ E
Sbjct: 116 LPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETE 175
Query: 210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 269
KV +++E+K +NV+PD +TYN+W+ + AAT +I V++ ++EM+ D + DW Y N+
Sbjct: 176 KVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNM 235
Query: 270 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329
+IY+ A AE + L E E TQR + Y FLI LY LG ++ +IW+SLR+
Sbjct: 236 ASIYVDAGLSQKAEKA-LQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAI 294
Query: 330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
K ++ Y+ ++ + L L + +W Q+ S +DI N L+GA++ GL +KA
Sbjct: 295 PKTSNVAYLNMIQVLVKLNDLPGAETLFKEW-QANCSTYDIRIVNVLIGAYAQEGLIQKA 353
Query: 390 NEF 392
NE
Sbjct: 354 NEL 356
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 190/352 (53%), Gaps = 4/352 (1%)
Query: 49 TSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHAL 108
S D D L+ R+ R P S V+ W+ +GN SEL I+K LRK R+ HAL
Sbjct: 31 PSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHAL 90
Query: 109 EISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA 168
+IS+WM H+ +S+ D A R+DL+ KV G+ E++FE +P+ + Y ALL+ YA
Sbjct: 91 QISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYA 150
Query: 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 228
K KAE++F+ +K+ L YN M+ LY+ G+ V ++ E++ + V PDIF
Sbjct: 151 SKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIF 210
Query: 229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 288
T N + + + +++ ++KFL D G DW Y + N YI A L L
Sbjct: 211 TVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAG-LTEKALEMLR 269
Query: 289 EAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 347
++E+ + Q++ Y+ L+ Y G K+++ ++W SL + YI ++S+ L +
Sbjct: 270 KSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKM 328
Query: 348 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399
++EV +I+++W ++ S FDI + L+ + G+ EKA E +L+QK
Sbjct: 329 DDIEEVEKIMEEW-EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQK 379
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 187/348 (53%), Gaps = 6/348 (1%)
Query: 64 RISL---PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE- 119
+ISL P+ A +V+ +W G + T EL ++KELRK +R ALE+ +WM E
Sbjct: 72 KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGER 131
Query: 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL 179
F LS SD A ++DL+ KV GI E +F LP + K Y +LL+ Y AK EKAE L
Sbjct: 132 FRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEAL 191
Query: 180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
++ + + L +N MMTLYM++ + +KV +V E+K+K++ DI++YN+W+SSC +
Sbjct: 192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251
Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
++++++ +M D +W + + +YI AE + L + E IT R
Sbjct: 252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDA-LRKVEARITGRNR 310
Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359
I Y +L+ LY LGNK ++ ++W + + + Y ++SS + +G ++ ++ ++
Sbjct: 311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370
Query: 360 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
W S +D N L+ A+ E A +++ P++++
Sbjct: 371 W-LPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSST 417
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 188/358 (52%), Gaps = 2/358 (0%)
Query: 50 SNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 109
+N K L S+I + PK S +Q WV G + +V+EL I+ +LR+ +R+ HALE
Sbjct: 19 TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALE 78
Query: 110 ISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG 169
+S+WM V S +++A +DL+ +V+G + E YFE L K +TY ALL+ Y
Sbjct: 79 VSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVR 138
Query: 170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT 229
+ EK+ FE++K+ ++L YN +M LY ++GQ EKV V+EE+K +NV PD ++
Sbjct: 139 QQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYS 198
Query: 230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 289
Y + I++ A +++++ L +M + DW Y YI A L
Sbjct: 199 YRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRA-VELLKM 257
Query: 290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349
+E + ++ Y+ LI LYA LG K ++ ++W + ++ +++Y+ +L S + +
Sbjct: 258 SENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDA 317
Query: 350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
L E E++ +WK S +D N ++ + + EKA L ++ A T S
Sbjct: 318 LVEAEEVLTEWKSSGNC-YDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPES 374
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 4/348 (1%)
Query: 57 DLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT 116
+L ++ +S+ + + +++ EG +L K LRK +R +HA EI +WM
Sbjct: 72 ELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEK 131
Query: 117 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEK 175
K S SD+A +DL+ K G+ + E YF L SAK + TY AL++ Y EK
Sbjct: 132 RK-MTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEK 190
Query: 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235
A+ FE + + N N+L +N MM++YM + Q EKV ++V+ +K++ + P TY++W+
Sbjct: 191 AKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQ 250
Query: 236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295
SC + ++D ++K +DEM DS W + NL IY T + L S L E+ +
Sbjct: 251 SCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIY-TKAGLYEKADSALKSMEEKMN 309
Query: 296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 355
++ FL+ LYAG+ ++ ++W+SL+ + ++ + +Y+ +L + LG L + +
Sbjct: 310 PNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKK 369
Query: 356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403
I +W +S +D+ N + + + E+A + ++K+ P
Sbjct: 370 IFTEW-ESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGP 416
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 163/315 (51%), Gaps = 3/315 (0%)
Query: 75 VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM 134
+ ++V EG +L K+LRK ++ + ALEI EWM KE + SD+A R++L+
Sbjct: 59 TLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWM-ERKEIAFTGSDHAIRLNLI 117
Query: 135 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 194
K G+ + E YF L S K TY +LL+ Y K KA+ FE + N N+L
Sbjct: 118 AKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLP 177
Query: 195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254
+N +M +YM +GQ EKV +V +K K++ P TY++WI SC + ++D V+K LDEM
Sbjct: 178 FNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMK 237
Query: 255 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 314
+ G W + NL IYI AE + L E ++ Y FLI LY G+ N
Sbjct: 238 AEGEGIFSWNTFANLAAIYIKVGLYGKAEEA-LKSLENNMNPDVRDCYHFLINLYTGIAN 296
Query: 315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 374
++ ++W L+ + + +Y+ +L + L + V ++ +W +S +D+ N
Sbjct: 297 ASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEW-ESTCWTYDMRMAN 355
Query: 375 RLLGAFSDVGLTEKA 389
+ ++ + E+A
Sbjct: 356 VAISSYLKQNMYEEA 370
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 10/323 (3%)
Query: 75 VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM 134
V+++W +GNQ S +R I+K+LR S + AL++SEWM K L D+A R+ L+
Sbjct: 55 VLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLI 114
Query: 135 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNAL 193
V G+ E++FE +P +A+ YT+LL+ YA + T KAE F++++ L +
Sbjct: 115 ENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPV 174
Query: 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
YN MM+LY ++ EKV ++ E+K +V D T N + +A ++ +++KFL++
Sbjct: 175 PYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKW 234
Query: 254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT-YDFLIILYAGL 312
G +W +++ Y+ A A L E+ + Q+ + YD L+ LY
Sbjct: 235 EGIHGIKLEWHTTLDMAKAYLRARSSGKA-MKMLRLTEQLVDQKSLKSAYDHLMKLYGEA 293
Query: 313 GNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFD 369
GN++++ ++WK + K K+ R+ Y ++ S L + + EI W +S +FD
Sbjct: 294 GNREEVLRVWK---LYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVW-ESLPLEFD 349
Query: 370 ISACNRLLGAFSDVGLTEKANEF 392
L + D G+TEKA +
Sbjct: 350 HRIPTMLASGYRDRGMTEKAEKL 372
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYAT 129
+ T ++++W G+Q S+L+ ++K LR S+++ AL++SEWM + L DYA
Sbjct: 385 KPVTPLLEQW---GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAA 441
Query: 130 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGA--KWTEKAEELFERVKQSN 187
R+ L V G+ E+YFE +P + K Y ALL YA + +E+ ++++N
Sbjct: 442 RLYLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENN 501
Query: 188 LSFNALMYNEMMTLYMSVGQVEKVAL 213
+ + + N ++ +Y + +++ + +
Sbjct: 502 VDPDLITVNHVLKVYAAESKIQAMEM 527
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 142/267 (53%), Gaps = 5/267 (1%)
Query: 59 KSRIFR--ISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT 116
+S +F+ +S P S + + +WV EGN+ T E+ + +LR+ + Y AL++SEW+
Sbjct: 129 QSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEA 188
Query: 117 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKA 176
+K+ +++ DYA+R+DL K+ G+ GE + +P S K Y LL A +K+
Sbjct: 189 NKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKS 248
Query: 177 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236
E +F ++K + ++M+ L+ + + +K+A V+ ++++N+ P + TY + I
Sbjct: 249 ELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDV 307
Query: 237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 296
AT +I +++ L+ M D G D+ + L + + + L + L E E +
Sbjct: 308 KGATNDISGMEQILETMK-DEGVELDF-QTQALTARHYSGAGLKDKAEKVLKEMEGESLE 365
Query: 297 RQWITYDFLIILYAGLGNKDKIDQIWK 323
+ L+ +YA LG +D++ +IWK
Sbjct: 366 ANRRAFKDLLSIYASLGREDEVKRIWK 392
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 211
+S TY+ LL +Y K K ++L +R+ +S A ++ ++ LY+ G+VEK
Sbjct: 434 SSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKA 489
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 97/218 (44%), Gaps = 9/218 (4%)
Query: 148 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 207
EG+ L +T + TA Y+GA +KAE++ + ++ +L N + +++++Y S+G+
Sbjct: 327 EGVELDFQT-QALTA--RHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGR 383
Query: 208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 267
++V + + + K F +L LN Q + + E Y
Sbjct: 384 EDEVKRIWKICESKPY----FEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYS 439
Query: 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW-KSLR 326
L+ +Y+ L + AE S + + T+D LI LY G +K D + K+ +
Sbjct: 440 VLLRVYVDHKMLSKGKDLVKRMAE-SGCRIEATTWDALIKLYVEAGEVEKADSLLDKASK 498
Query: 327 MTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364
+ K+ +++ I+ Y G + +I + +++
Sbjct: 499 QSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAG 536
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 177/393 (45%), Gaps = 10/393 (2%)
Query: 1 MAARSFFL-GLRRAS--NTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDD 57
M R +F+ +RR + + N+ N F + S S + C+ E +
Sbjct: 8 MRQREYFVQAIRRTTCVASPALNQTNFQASSFLTTLISSKKSPEETCIGSEEEEEEPNKC 67
Query: 58 LKSRIFRISLPKR-SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT 116
L RI + LPK + + +Q W+ +G ++ H + LRK R K ALE+ EW++
Sbjct: 68 LSLRIEK--LPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIR 125
Query: 117 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKA 176
+ + L + +Y+ ++ K+ G+ GE+ F +P + Y L+ A
Sbjct: 126 ERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLA 185
Query: 177 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236
E +++++ + L+YN ++ + G+ + +A + +K P + TY++ +
Sbjct: 186 LEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKL 245
Query: 237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 296
A NID V K D M +G + V Y L + A AE+ T E EKSIT
Sbjct: 246 EANEHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYT-EEIEKSITG 303
Query: 297 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 356
W T D L+ILY LG + ++ + W +R + S++Y+ ++ +G+L E+
Sbjct: 304 DNWSTLDILMILYGRLGKEKELARTWNVIRGF-HHVRSKSYLLATEAFARVGNLDRAEEL 362
Query: 357 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
+ K + + N LL + GL EKA
Sbjct: 363 WLEMK-NVKGLKETEQFNSLLSVYCKDGLIEKA 394
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 152/297 (51%), Gaps = 13/297 (4%)
Query: 60 SRIFR--ISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTH 117
S +F+ +S+ S + + +WV +G E + +LRK + + AL+++EW+ +
Sbjct: 128 SEMFKAIVSVSGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDEN 187
Query: 118 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAE 177
K+F + + DYA R+DL++KV G + GE Y + +P S + Y LL + AE
Sbjct: 188 KQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAE 247
Query: 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237
+F ++K + N+M+ LY V + +K+A V+ ++++N+ P++ TY + I +
Sbjct: 248 AVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTK 306
Query: 238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSITQ 296
++ +I +++ ++ M S G + ++ L+ + ++ L L E E +S+ +
Sbjct: 307 GSSNDITGMEQIVETMK--SEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEE 364
Query: 297 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 353
+ + D L + Y L +D++ ++WK + Y +L++ L G + +V
Sbjct: 365 NRHMCKDLLSV-YGYLQREDEVRRVWKICEENPR------YNEVLAAILAFGKIDKV 414
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 136 KVFGIHSGERYFEG-LPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 193
K+ + E FE L +S + +S Y+ LL +Y K + ++L +++ S + AL
Sbjct: 410 KIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGAL 469
Query: 194 MYNEMMTLYMSVGQVEKV-ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 252
++ ++ LY+ G+VEK + + + I+ K + P + ++ + ++ +K
Sbjct: 470 TWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQR 529
Query: 253 MSCDSGGSDDWVKYVNLVNIYITA 276
M S W Y L+ Y+ A
Sbjct: 530 MKQAGYQSRFWA-YQTLIQAYVNA 552
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 146/289 (50%), Gaps = 9/289 (3%)
Query: 38 GSSQNECLDEETSNSDGKDDLKSR----IFRISLPKRSATNVIQRWVSEGNQATVSELRH 93
GS ++ EE + DG K R ++ + +S +V+++WV EG + +E+
Sbjct: 119 GSDNDDLEIEEKHSKDGGKPTKKRGQSELYESIVAYKSVKHVLEKWVKEGKDLSQAEVTL 178
Query: 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS 153
+ LRK + Y L++ EW+ + +F ++++YA+++DL+ KV + E + + +P S
Sbjct: 179 AIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPES 238
Query: 154 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213
++ Y LL KAE++F ++K+ + N+++ LY S+ +K++
Sbjct: 239 SRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVFACNQLLLLY-SMHDRKKISD 297
Query: 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
V+ ++R+N+ P TY+ I+S +I ++K ++ + + D ++ + L Y
Sbjct: 298 VLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEGIELDPELQSI-LAKYY 356
Query: 274 ITASHLVNAESSTLVEAE-KSITQRQWITYDFLIILYAGLGNKDKIDQI 321
I A L + E E K + Q W+ L+ LYA +G+ D + ++
Sbjct: 357 IRAG-LKERAQDLMKEIEGKGLQQTPWVCRS-LLPLYADIGDSDNVRRL 403
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
Y AL+ +Y K K +L +R+ + ++ ++ ++ LY+ G+V K L++
Sbjct: 450 PYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRA 509
Query: 219 KRKNVVPDIFTYNLWI 234
+ N + +FT + I
Sbjct: 510 TKDNKMRPMFTTYMAI 525
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 137/305 (44%), Gaps = 8/305 (2%)
Query: 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEF--VLSDSDYATRIDLMTKVFGIHS 142
++T SEL LK L +++ AL +W + K++ +L +S A I ++ K + S
Sbjct: 132 ESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSS 191
Query: 143 GERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 200
F GL + + +YT+L+ +A + +A +F+++++ + YN ++
Sbjct: 192 AANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Query: 201 LYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG 259
++ +G K+ +VE++K + PD +TYN I+ C + + +EM +G
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGF 310
Query: 260 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 319
S D V Y L+++Y SH L E + +TY+ LI YA G D+
Sbjct: 311 SYDKVTYNALLDVY-GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369
Query: 320 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 379
++ + K Y +LS + G ++ I ++ + + +I N +
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP-NICTFNAFIKM 428
Query: 380 FSDVG 384
+ + G
Sbjct: 429 YGNRG 433
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 3/250 (1%)
Query: 154 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213
A + TY L+ ++A ++FE +K + S++ + YN ++ +Y + ++
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMK 335
Query: 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
V+ E+ P I TYN IS+ A +D+ + ++M+ + G D Y L++ +
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGF 394
Query: 274 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 333
A V + S E + + T++ I +Y G ++ +I+ + +
Sbjct: 395 ERAGK-VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453
Query: 334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 393
+ +L+ + G EV + + K++ + N L+ A+S G E+A +
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVY 512
Query: 394 MLLLQKNCAP 403
+L P
Sbjct: 513 RRMLDAGVTP 522
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY +L+++++ + K+EE+ + + + + YN ++ Y ++ + + E+
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725
Query: 219 KRKNVVPDIFTYNLWISSCAA 239
+ +VPD+ TYN +I S AA
Sbjct: 726 RNSGIVPDVITYNTFIGSYAA 746
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 2/168 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
T +++ +Y + KA + + +K+ + + YN +M ++ K ++ EI
Sbjct: 631 TLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI 690
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K + PDI +YN I + + + EM +SG D + Y + Y S
Sbjct: 691 LAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR-NSGIVPDVITYNTFIGSYAADSM 749
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 326
A + Q TY+ ++ Y L KD+ + LR
Sbjct: 750 FEEAIGVVRYMIKHGCRPNQN-TYNSIVDGYCKLNRKDEAKLFVEDLR 796
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
T+ LL ++ + +F+ +K++ +N +++ Y G E+ V +
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
V PD+ TYN +++ A +Q +K L EM D + + Y +L++ Y
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKE 574
Query: 279 L 279
+
Sbjct: 575 I 575
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 37/188 (19%)
Query: 159 TYTALLHLYAGAK-----------------------------------WTEKAEELFERV 183
TY +LLH YA K +AE F +
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620
Query: 184 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 243
K+ S + N M+++Y V K V++ +K + P + TYN + + + +
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 303
+ ++ L E+ G D + Y ++ Y + + +A S E S ITY+
Sbjct: 681 GKSEEILREI-LAKGIKPDIISYNTVIYAYCRNTRMRDA-SRIFSEMRNSGIVPDVITYN 738
Query: 304 FLIILYAG 311
I YA
Sbjct: 739 TFIGSYAA 746
>sp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g43010
OS=Arabidopsis thaliana GN=At1g43010 PE=3 SV=1
Length = 257
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 58 LKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTH 117
L SRI K S ++++W +G + S LR ++K L + + ALE S+WM H
Sbjct: 38 LPSRIKTDINQKASIIPLLEQWRKQGYEVNPSHLRGLIKNLSDCKNFTTALEASKWMFKH 97
Query: 118 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA-GAKWTEKA 176
F D A ++ L+ V G+ E+ F+ +P + Y+ LL Y + +KA
Sbjct: 98 SVFDNFPEDCAAQLHLVNTVLGLEEAEKMFKNIP---EKMRDYSVLLSSYTKPVRTVDKA 154
Query: 177 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 223
E F+++++ ++N M+ LY + +++ V ++ ++K+ N+
Sbjct: 155 EATFKKMRELGFLLKPYLFNSMICLYGQLQRLDMVEKLLYKLKKNNM 201
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 33/337 (9%)
Query: 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRID-----LMTKVFGIHS- 142
++L ++K L S ++ A+ + EW+V LS + A ++D + ++ G S
Sbjct: 137 TDLVSLVKGLDDSGHWERAVFLFEWLV------LSSNSGALKLDHQVIEIFVRILGRESQ 190
Query: 143 ---GERYFEGLPLSAKTSET--YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 197
+ + +PL + YT +LH Y+ EKA +LFER+K+ S + YN
Sbjct: 191 YSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNV 250
Query: 198 MMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM-SC 255
++ ++ +G+ K+ V++E++ K + D FT + +S+CA + + K+F E+ SC
Sbjct: 251 ILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSC 310
Query: 256 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 315
G V Y L+ ++ A A S L E E++ +TY+ L+ Y G
Sbjct: 311 --GYEPGTVTYNALLQVFGKAGVYTEA-LSVLKEMEENSCPADSVTYNELVAAYVRAGFS 367
Query: 316 DKIDQIWKSLRMTKQKMTSR--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 373
+ + + MTK+ + Y ++ +Y G E ++ K++ +
Sbjct: 368 KEAAGVIE--MMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP-NTCTY 424
Query: 374 NRLLGAFSDVGLTEKANEFHMLLL---QKNCAPTNAS 407
N +L S +G ++NE +L C+P A+
Sbjct: 425 NAVL---SLLGKKSRSNEMIKMLCDMKSNGCSPNRAT 458
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 159 TYTALLHLYA--GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216
TY +L+ +Y G W KAEE+ + +++S L + + YN ++ + G +++ ++
Sbjct: 668 TYNSLMDMYVRRGECW--KAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLS 725
Query: 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254
E+ + + P IFTYN ++S A +++ ++ M+
Sbjct: 726 EMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMA 763
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 50/95 (52%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
+ ++L ++ ++AE + E +++ LS + + YN +M +Y+ G+ K +++ ++
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254
+ + PD+ +YN I + + + L EM+
Sbjct: 694 KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/252 (17%), Positives = 96/252 (38%), Gaps = 17/252 (6%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY ALL+ A E + +K Y+ M+ Y G + + I
Sbjct: 528 TYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRI 587
Query: 219 KRKNVVPD---IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
K + P + T L C A ++ + G D V + ++++I+ T
Sbjct: 588 KEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK----HGYKPDMVIFNSMLSIF-T 642
Query: 276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
+++ + L + +TY+ L+ +Y G K ++I K+L ++ K
Sbjct: 643 RNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLV 702
Query: 336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC----NRLLGAFSDVGLTEKANE 391
+Y ++ + G ++E ++ + + I C N + ++ +G+ + +
Sbjct: 703 SYNTVIKGFCRRGLMQEAVRMLSEMTERG-----IRPCIFTYNTFVSGYTAMGMFAEIED 757
Query: 392 FHMLLLQKNCAP 403
+ + +C P
Sbjct: 758 VIECMAKNDCRP 769
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 38/245 (15%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY AL++ + ++A ++F VK MYN ++ Y +G+++ + EE+
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
+R+ +VPD+ TYN I+ NI+ KK D+++ S G D V
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT--SKGLPDLV-------------- 471
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
T+ L+ Y G K + K + K Y
Sbjct: 472 ----------------------TFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYN 509
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398
++ Y G+LK + Q ++ ++++ N LL +S G E AN +L+
Sbjct: 510 IVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLE 569
Query: 399 KNCAP 403
K P
Sbjct: 570 KGLVP 574
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 163 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 222
L+ YA E E F+R +AL +M + + V V +E+ R+
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218
Query: 223 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
+ P++FT+N+ I++ T +++ + +++M G S + V Y L++ Y
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSPNVVSYNTLIDGY 268
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 159 TYTALLHLY---AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
+Y L+ Y G KA+ + + + ++++S N +N ++ + + V
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVF 319
Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
+E+ ++V P++ +YN I+ I + D+M +G + + Y L+N +
Sbjct: 320 KEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM-VSAGVQPNLITYNALINGFCK 378
Query: 276 ASHLVNA-ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 334
L A + V+ + ++ + Y+ LI Y LG D D M ++ +
Sbjct: 379 NDMLKEALDMFGSVKGQGAVPTTRM--YNMLIDAYCKLGKID--DGFALKEEMEREGIVP 434
Query: 335 R--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 368
Y C+++ G+++ ++ DQ D
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL 470
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 118 KEFVLSDSDYATRIDLMTKVFGIHSGERYFE-----GLPLSAKTSETYTALLHLYAGAKW 172
K L Y T I M + + +E G+P S +TY ++ +Y
Sbjct: 768 KNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSI---QTYNTMISVYGRGLQ 824
Query: 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
+KA E+F ++S L + +Y M+ Y G++ + + E+++K + P +YN+
Sbjct: 825 LDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNM 884
Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
+ CA + +V + L M +G D Y+ L+ +Y AESS EAEK
Sbjct: 885 MVKICATSRLHHEVDELLQAME-RNGRCTDLSTYLTLIQVY--------AESSQFAEAEK 935
Query: 293 SIT 295
+IT
Sbjct: 936 TIT 938
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 7/245 (2%)
Query: 148 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 207
EG+P TYT ++ YA + E+A + F +K + Y+ +++L + G
Sbjct: 287 EGVP---PNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGD 343
Query: 208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 267
EK + E+++ + +VP +T +S T N + +M + +D+ ++ +
Sbjct: 344 WEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGL 403
Query: 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 327
++ IY +A+S E E+ TY + ++ GN K + + ++
Sbjct: 404 -IIRIYGKLGLFHDAQS-MFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKT 461
Query: 328 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 387
++ YI +L Y + ++ E S T D S+CN +L ++ + L E
Sbjct: 462 RDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRAL--SKTGLPDASSCNDMLNLYTRLNLGE 519
Query: 388 KANEF 392
KA F
Sbjct: 520 KAKGF 524
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 107 ALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFE-----GLPLSAKTSETYT 161
AL++ E M T ++ LS Y + K+ + E F GLP ++ ++
Sbjct: 452 ALDVIEMMKT-RDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCND--- 507
Query: 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 221
+L+LY EKA+ +++ + F+ +Y M +Y G V + ++ ++ R+
Sbjct: 508 -MLNLYTRLNLGEKAKGFIKQIMVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVKMGRE 566
Query: 222 NVVPDIFTYNLWISSCAATLNI 243
V D N ++ + A +++I
Sbjct: 567 ARVKD----NRFVQTLAESMHI 584
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 131/284 (46%), Gaps = 11/284 (3%)
Query: 132 DLMTKVFGI-HSGER---YFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQ 185
++M K +GI S E+ FE + T + TY L+ + A A K E++++
Sbjct: 509 NVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRE 568
Query: 186 SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 245
+ + + Y +++ ++ +GQ+ V +E+ N+ PD+ Y + I++ A T N+ Q
Sbjct: 569 TGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQ 628
Query: 246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES--STLVEAEKSITQRQWITYD 303
+++ M ++G + V Y +L+ +Y +L AE+ L+++ T +
Sbjct: 629 AMSYVEAMK-EAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSN 687
Query: 304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363
+I LY+ K + I+ S++ + + + +L Y G +E +I Q ++
Sbjct: 688 CMINLYSERSMVRKAEAIFDSMKQ-RGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREM 746
Query: 364 ATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
+S N +LG F+ G ++A E ++ P +++
Sbjct: 747 KILTDPLSY-NSVLGLFALDGRFKEAVETFKEMVSSGIQPDDST 789
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 8/199 (4%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
+S TY ++ Y + ++A E F+R+ + + + +N M+ +Y + GQ+ +V ++
Sbjct: 297 SSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLM 356
Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
+ +K + PD TYN+ IS +I++ + EM D G D V Y L+ + +
Sbjct: 357 KTMKL-HCAPDTRTYNILISLHTKNNDIERAGAYFKEMK-DDGLKPDPVSYRTLLYAF-S 413
Query: 276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM--TKQKMT 333
H+V + E + + T L +Y + +++ W + M+
Sbjct: 414 IRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYV---EAEMLEKSWSWFKRFHVAGNMS 470
Query: 334 SRNYICILSSYLMLGHLKE 352
S Y + +Y G+L E
Sbjct: 471 SEGYSANIDAYGERGYLSE 489
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKV-FGIHSGERYFEGLPL 152
+L+ L K+ ++++ + + M+ K +S Y T ID+ +K +H+ + +
Sbjct: 193 MLRILGKACKWRYVQSLWDEMI-RKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKI 251
Query: 153 SAKTSETYTAL-LHLYAGAKWTEKAEELF------ERVKQSNLSFNALMYNEMMTLYMSV 205
+ E T + L +Y A+ +KAEE F E S++ ++ YN M+ Y
Sbjct: 252 GMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKS 311
Query: 206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
GQ+++ + + + + +VP T+N I + +V + M
Sbjct: 312 GQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTM 359
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 10/265 (3%)
Query: 140 IHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE--KAEELFERVKQSNLSFNALMYNE 197
I E+ F+ + L+ YT + + A + + +A ++F + S + NA+ +N
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330
Query: 198 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM---S 254
+M +++ G+ EKV V ++K+ PD TYN I + N++ K L+ M
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390
Query: 255 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 314
C+ S N + YI VN + ++ + +TY+ L+ ++ G +
Sbjct: 391 CEVNAST-----FNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKS 445
Query: 315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 374
D + ++ K + + + Y +++ + +GH ++ + + +S
Sbjct: 446 TDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYE 505
Query: 375 RLLGAFSDVGLTEKANEFHMLLLQK 399
+L G +K E ++QK
Sbjct: 506 MVLAQLRRAGQLKKHEELVEKMIQK 530
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/208 (16%), Positives = 81/208 (38%), Gaps = 3/208 (1%)
Query: 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 214
K+ Y ++ L + + A L + +K N+ + + ++ Y+ G +
Sbjct: 149 KSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHC 208
Query: 215 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 274
++ VPD +++ IS+ + + + F D S D + Y NLV +
Sbjct: 209 FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD--SLKDRFEPDVIVYTNLVRGWC 266
Query: 275 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 334
A + AE E + + + TY +I G + ++ + + +
Sbjct: 267 RAGEISEAE-KVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNA 325
Query: 335 RNYICILSSYLMLGHLKEVGEIIDQWKQ 362
+ ++ ++ G ++V ++ +Q K+
Sbjct: 326 ITFNNLMRVHVKAGRTEKVLQVYNQMKK 353
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 112/273 (41%), Gaps = 37/273 (13%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TYT+++ +K E+A +LF+ ++Q ++ N +MY ++ Y G+V++ L++E++
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 219 KRKNVVPDIFTYNLWISS-CA--------------------ATLNIDQ--VKKFLDEMSC 255
KN +P+ T+N I CA T++ D + + L +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 256 D-----------SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 304
D SG D Y + Y L++AE E ++ TY
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP-DLFTYSS 677
Query: 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364
LI Y LG + + K +R T + + ++ ++ L + + K+ G + S
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737
Query: 365 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397
+FD LL + +T A + L+L
Sbjct: 738 MMEFDTVV--ELLEKMVEHSVTPNAKSYEKLIL 768
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 3/244 (1%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
Y LL+ A ++ ++++ + + + N YN+M+ Y +G VE+ V +I
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279
+ PD FTY I ++D K +EM G + V Y +L++ A
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL-KGCRRNEVAYTHLIHGLCVARR- 303
Query: 280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 339
++ V+ + TY LI G K + + K + T K Y
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 340 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399
++ S ++ E++ Q + ++ N L+ + G+ E A + L+ +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 400 NCAP 403
+P
Sbjct: 423 KLSP 426
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 45/248 (18%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TYT L+ EKA EL ++ + L N + YN ++ Y G +E VVE +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
+ + + P+ TYN I + N+ + L++M + D V Y +L++ + +
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCRSGN 477
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
+A + ++ + QW TY + ID + KS R
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQW-TYTSM------------IDSLCKSKR------------ 512
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL-- 396
++E ++ D +Q + ++ L+ + G K +E H++L
Sbjct: 513 -----------VEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAG---KVDEAHLMLEK 557
Query: 397 -LQKNCAP 403
L KNC P
Sbjct: 558 MLSKNCLP 565
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-KNVVPDIFTYNLWISS 236
EL E++ + +++ NA Y +++ VG + V + ++R + + P +N +S
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
Query: 237 CAATLNIDQVKKFLDEMSC 255
C ++ K +D+M C
Sbjct: 806 CCKLKKHNEAAKVVDDMIC 824
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 7/228 (3%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
Y L+ + K EKA ELF+ + N +Y +++ Y G+ + ++E +K
Sbjct: 153 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 212
Query: 220 RK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
N PD+ TY++ I S D+V+ L +M G + + Y L++ Y A
Sbjct: 213 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMR-RQGIRPNTITYNTLIDAYGKAKM 271
Query: 279 LVNAESSTLVE--AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 336
V E STL++ E W T + + + G G + ++ ++ + + + R
Sbjct: 272 FVEME-STLIQMLGEDDCKPDSW-TMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRT 329
Query: 337 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 384
+ +L SY G+ K++ ++ ++ Q + I N ++ AF G
Sbjct: 330 FNILLDSYGKSGNYKKMSAVM-EYMQKYHYSWTIVTYNVVIDAFGRAG 376
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 74 NVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISE--------WMVTHKEFVLSDS 125
N +++ S G + + +L KS YK + E W + V+
Sbjct: 313 NCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAF 372
Query: 126 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQ 185
A + M +F + ER F + T +L+ Y A +K + ++
Sbjct: 373 GRAGDLKQMEYLFRLMQSERIFP-------SCVTLCSLVRAYGRASKADKIGGVLRFIEN 425
Query: 186 SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236
S++ + + +N ++ Y + + ++ V+E +++K PD TY + +
Sbjct: 426 SDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKA 476
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 74 NVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL 133
+V++R E + V H K + S +KH E M+ K + D +
Sbjct: 45 DVVKRLRQE---SCVPLALHFFKSIANSNLFKHTPLTFEVMI-RKLAMDGQVDSVQYLLQ 100
Query: 134 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 193
K+ G H E F +++ +Y E+A E+F R+K+ +
Sbjct: 101 QMKLQGFHCSEDLF-------------ISVISVYRQVGLAERAVEMFYRIKEFGCDPSVK 147
Query: 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
+YN ++ + +++ + +V ++KR P++FTYN+ + + +D KK L EM
Sbjct: 148 IYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM 207
Query: 254 SCDSGGSDDWVKYVNLVN 271
S + G D V Y +++
Sbjct: 208 S-NKGCCPDAVSYTTVIS 224
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 123/325 (37%), Gaps = 11/325 (3%)
Query: 82 EGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIH 141
+G + V +LK L K+ + A ++ M ++K Y T I M +V +
Sbjct: 175 DGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM-SNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 142 SGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 201
G E Y AL++ + A EL + + +S N + Y+ ++ +
Sbjct: 234 EGRELAERF---EPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINV 290
Query: 202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD 261
+ GQ+E + ++ ++ P+I+T + + C ++M G
Sbjct: 291 LCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQP 350
Query: 262 DWVKYVNLVNIYITASHLVNAES--STLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 319
+ V Y LV + + ++V A S S + E S R TY LI +A G+ D
Sbjct: 351 NVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIR---TYGSLINGFAKRGSLDGAV 407
Query: 320 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 379
IW + + Y ++ + KE +I+ + + + N +
Sbjct: 408 YIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAP-SVPTFNAFIKG 466
Query: 380 FSDVGLTEKANE-FHMLLLQKNCAP 403
D G + A + F + Q C P
Sbjct: 467 LCDAGRLDWAEKVFRQMEQQHRCPP 491
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TYTAL++ +A EKAEE+FE++++ L + +YN +M Y G A + +
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360
Query: 219 KRKNVVPDIFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277
+ PD +YN+ + + A L+ D F +EM G + ++ L++ Y A
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVF-EEMK-RLGIAPTMKSHMLLLSAYSKAR 418
Query: 278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 337
+ E+ +E + ++ + ++ LY LG K+++I + Y
Sbjct: 419 DVTKCEAIVKEMSENGVEPDTFVL-NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTY 477
Query: 338 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397
+++ Y G L+ + E+ + K+ D+ +GA+S L K E ++
Sbjct: 478 NILINIYGKAGFLERIEELFVELKEKNFRP-DVVTWTSRIGAYSRKKLYVKCLEVFEEMI 536
Query: 398 QKNCAPTNASG 408
CAP +
Sbjct: 537 DSGCAPDGGTA 547
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 13/253 (5%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
T+ETY +++LY A + + +L+ ++ N Y ++ + G EK +
Sbjct: 263 TTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIF 322
Query: 216 EEIKRKNVVPDIFTYNLWISS---CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 272
E+++ + PD++ YN + S ++ + M C+ D Y +V+
Sbjct: 323 EQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEP----DRASYNIMVDA 378
Query: 273 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 332
Y A +AE + E ++ ++ L+ Y+ + K + I K M++ +
Sbjct: 379 YGRAGLHSDAE-AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVK--EMSENGV 435
Query: 333 TSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 390
++ +L+ Y LG ++ +I+ + + + DIS N L+ + G E+
Sbjct: 436 EPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTA-DISTYNILINIYGKAGFLERIE 494
Query: 391 EFHMLLLQKNCAP 403
E + L +KN P
Sbjct: 495 ELFVELKEKNFRP 507
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 109 EISEWMVTHKEFVLSDS-DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLY 167
E+SE V FVL+ + R+ TK+ I + E P +A S TY L+++Y
Sbjct: 429 EMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE---MENGPCTADIS-TYNILINIY 484
Query: 168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI 227
A + E+ EELF +K+ N + + + + Y K V EE+ PD
Sbjct: 485 GKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDG 544
Query: 228 FTYNLWISSCAATLNIDQVKKFLDEM 253
T + +S+C++ ++QV L M
Sbjct: 545 GTAKVLLSACSSEEQVEQVTSVLRTM 570
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 139 GIHS-GERYFEGLPL--SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 195
G+HS E FE + A T +++ LL Y+ A+ K E + + + ++ + + +
Sbjct: 383 GLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVL 442
Query: 196 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
N M+ LY +GQ K+ ++ E++ DI TYN+ I+ ++++++ E+
Sbjct: 443 NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVEL 500
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGE 144
A+ +L ++ +LR ++++ + + EW++ F + ID + F E
Sbjct: 116 HASWDDLINVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAE 175
Query: 145 RYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLS---FNALMYNEMM 199
+ L S T +TY L+ Y A E+AE + ++ ++S +YN +
Sbjct: 176 SLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYI 235
Query: 200 TLYMS-VGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235
M G E+ V + +KR P TYNL I+
Sbjct: 236 EGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMIN 272
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 131/314 (41%), Gaps = 23/314 (7%)
Query: 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL--- 150
+ +EL KS ++ LE+ WM + ++ + Y+ I +M K F +
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 162
Query: 151 ---PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQ-SNLSFNALMYNEMMTLYMSVG 206
P ++ + TA LH AK EK +++K N + YN ++ + G
Sbjct: 163 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 222
Query: 207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 266
+V++V + +++ V PD++T+N + + I +++ L M + D + +
Sbjct: 223 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNE-CKPDIITF 281
Query: 267 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 326
L++ Y E T +S + T++ +II Y DK + ++K
Sbjct: 282 NVLIDSYGKKQEFEKME-QTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFK--- 337
Query: 327 MTKQKMTSRNYICILSSY----LMLGHLKEVGEIIDQWKQSATSD--FDISACNRLLGAF 380
KM NYI +Y +M G+ V + +++ SD S N +L +
Sbjct: 338 ----KMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVY 393
Query: 381 SDVGLTEKANE-FH 393
GL +A++ FH
Sbjct: 394 CRNGLYIEADKLFH 407
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY ++ +Y +A E+FE V +S+ A N M+ +Y G + +
Sbjct: 350 TYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNA 409
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS 257
V PD TY + +QV+ + +M D
Sbjct: 410 SAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDG 448
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 72 ATNVIQRWVSEG---NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYA 128
A V R V G N+ T S L ++L + R +EIS+ +T Y+
Sbjct: 324 AIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQ-------GIYS 376
Query: 129 TRIDLMTKVFGIHSGERYFEGL---PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQ 185
+ ++K+ + R F + P+ + ++Y ++L GA T +A E+ ++ +
Sbjct: 377 YLVRTLSKLGHVSEAHRLFCDMWSFPVKGE-RDSYMSMLESLCGAGKTIEAIEMLSKIHE 435
Query: 186 SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 245
+ + +MYN + + + Q+ + + E++K+ PDIFTYN+ I+S +D+
Sbjct: 436 KGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDE 495
Query: 246 VKKFLDEMSCDSGGSDDWVKYVNLVN 271
+E+ S D + Y +L+N
Sbjct: 496 AINIFEELE-RSDCKPDIISYNSLIN 520
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
Y + K +LFE++K+ S + YN ++ + VG+V++ + EE++
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279
R + PDI +YN I+ ++D+ EM + G + D V Y L+ + +
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTLMECF-GKTER 562
Query: 280 VNAESSTLVEAEKSITQRQWITYDFLI 306
V S E Q +TY+ L+
Sbjct: 563 VEMAYSLFEEMLVKGCQPNIVTYNILL 589
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 11/240 (4%)
Query: 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216
S TY LL Y ++ KA +++ +++ + YN ++ ++ + EK V E
Sbjct: 203 SFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLD---ALAKDEKACQVFE 259
Query: 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 276
++K+++ D +TY + I + D+ +EM + G + + V Y L+ + +
Sbjct: 260 DMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTLMQV-LAK 317
Query: 277 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 336
+V+ ++ + TY L+ L G ++D + + ++K+ MT
Sbjct: 318 GKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGV---VEISKRYMTQGI 374
Query: 337 YICILSSYLMLGHLKEVGEII-DQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFH 393
Y ++ + LGH+ E + D W + D +S L GA + E ++ H
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIH 434
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 114/250 (45%), Gaps = 23/250 (9%)
Query: 148 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 207
EGL L+ Y L+ + A K +KA ++F R+ ++ N Y+ ++ L ++ GQ
Sbjct: 299 EGLTLNVVG---YNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355
Query: 208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK-FLDEMSCDSGGSDDWVKY 266
+ ++ VV EI ++ + I++Y + + + ++ + + F D S G D Y
Sbjct: 356 LVRLDGVV-EISKRYMTQGIYSY--LVRTLSKLGHVSEAHRLFCDMWSFPVKGERD--SY 410
Query: 267 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI-ILYAGLGNKDKIDQIWKSL 325
++++ A + A +E I ++ +T + +++ LG +I I
Sbjct: 411 MSMLESLCGAGKTIEA-----IEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLF 465
Query: 326 RMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAF 380
K+ S + Y +++S+ G + EV E I+ +++ SD DI + N L+
Sbjct: 466 EKMKKDGPSPDIFTYNILIASF---GRVGEVDEAINIFEELERSDCKPDIISYNSLINCL 522
Query: 381 SDVGLTEKAN 390
G ++A+
Sbjct: 523 GKNGDVDEAH 532
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 117 HKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWT 173
H++ V++D+ Y T + K+ I FE + + + TY L+ +
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEV 493
Query: 174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 233
++A +FE +++S+ + + YN ++ G V++ + +E++ K + PD+ TY+
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553
Query: 234 ISSCAATLNIDQVKKFLDEM 253
+ T ++ +EM
Sbjct: 554 MECFGKTERVEMAYSLFEEM 573
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
+Y +L++ ++A F+ +++ L+ + + Y+ +M + +VE + EE+
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Query: 219 KRKNVVPDIFTYNLWI 234
K P+I TYN+ +
Sbjct: 574 LVKGCQPNIVTYNILL 589
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY+ L+ + + E A LFE + N + YN ++ G+ + + ++
Sbjct: 549 TYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKM 608
Query: 219 KRKNVVPDIFTYNL 232
K++ + PD TY +
Sbjct: 609 KQQGLTPDSITYTV 622
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 114/290 (39%), Gaps = 17/290 (5%)
Query: 64 RISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEF--V 121
R +LP A R V G + V +L +L L + HA E+ K F V
Sbjct: 150 RANLPS-EACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHA---QEFFGKAKGFGIV 205
Query: 122 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEEL 179
S Y+ + ++ + F+ + + Y ALL + + ++
Sbjct: 206 PSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKM 265
Query: 180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
F+ + L +A + + Y G V V++ +KR ++VP+++T+N I +
Sbjct: 266 FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCK 325
Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
+D LDEM D W N + Y VN + L +++
Sbjct: 326 NEKVDDAYLLLDEMIQKGANPDTWT--YNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDR 383
Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349
TY+ ++ L +G D+ +IW + M+ R + +++Y ++ H
Sbjct: 384 HTYNMVLKLLIRIGRFDRATEIW-------EGMSERKFYPTVATYTVMIH 426
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY+ ++ A+ TE+ +E F+ + N+ N ++YN ++ Y G++ + E++
Sbjct: 625 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K K + P+ TY I + +++ K +EM + G + Y L++ Y
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME-GLEPNVFHYTALIDGYGKLGQ 743
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR---MTKQKMTSR 335
+V E L E ITY +I YA GN + ++ +R + +T +
Sbjct: 744 MVKVE-CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802
Query: 336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 368
+I G+LK+ G +++ +K S ++
Sbjct: 803 EFI--------YGYLKQ-GGVLEAFKGSDEENY 826
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 154 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213
+ S TYT+L+ + E+A+ LFE ++ L N Y ++ Y +GQ+ KV
Sbjct: 690 SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVEC 749
Query: 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
++ E+ KNV P+ TY + I A N+ + + L+EM + G D + Y + Y
Sbjct: 750 LLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMR-EKGIVPDSITYKEFIYGY 808
Query: 274 ITASHLVNA 282
+ ++ A
Sbjct: 809 LKQGGVLEA 817
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 95/202 (47%), Gaps = 6/202 (2%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
+T ++ + E+A +LF +++++ ++ N + +N ++ G+ ++ + E++
Sbjct: 276 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV 335
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279
+ + P + TY++ + I L EM+ G + + Y NL++ +I A L
Sbjct: 336 ERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT-KKGFPPNVIVYNNLIDSFIEAGSL 394
Query: 280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK---SLRMTKQKMTSRN 336
A + K ++ TY+ LI Y G D +++ K S+ + + +
Sbjct: 395 NKAIEIKDLMVSKGLSLTSS-TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 453
Query: 337 YICILSSYLML-GHLKEVGEII 357
IC+L S+LM L+ VGE++
Sbjct: 454 VICLLCSHLMFDSALRFVGEML 475
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 86/195 (44%), Gaps = 2/195 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
+Y L+ G K ++A + + + L + Y+ ++ ++ +VE+ ++
Sbjct: 555 SYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 614
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
KR ++PD++TY++ I C ++ ++F DEM + V Y +L+ Y +
Sbjct: 615 KRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRAYCRSGR 673
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
L A K I+ TY LI + + ++ +++ +RM + +Y
Sbjct: 674 LSMALELREDMKHKGISPNSA-TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732
Query: 339 CILSSYLMLGHLKEV 353
++ Y LG + +V
Sbjct: 733 ALIDGYGKLGQMVKV 747
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234
KA EL+ + + N ++ G++++ + +EI + V D +YN I
Sbjct: 501 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLI 560
Query: 235 SSCAATLNIDQVKKFLDEM 253
S C +D+ FLDEM
Sbjct: 561 SGCCGKKKLDEAFMFLDEM 579
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 145/342 (42%), Gaps = 17/342 (4%)
Query: 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEIS---EWMVTHKEFVLSDSDYA 128
A +V+ + + G + V + ++ + R A+++ E M + V+ Y
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVI----YN 178
Query: 129 TRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALL-HLYAGAKWTEKAEELFERVKQ 185
T ID K+ ++ F+ + ++ TY +L+ L +W++ A + + V +
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 238
Query: 186 SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 245
++ N + + ++ +++ G+ + + EE+ R+ V PD+FTYN I+ +D+
Sbjct: 239 -DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE 297
Query: 246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL 305
K+ LD M G D V Y L+N + S V+ + E + ITY+ +
Sbjct: 298 AKQMLDLMV-TKGCLPDVVTYNTLINGF-CKSKRVDEGTKLFREMAQRGLVGDTITYNTI 355
Query: 306 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 365
I Y G D +I+ + + R Y +L M +++ + + ++S
Sbjct: 356 IQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEI 412
Query: 366 SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
+ DI+ N ++ +G E A + L K P S
Sbjct: 413 -ELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217
TY+ LL+ EKA LFE +++S + + YN ++ +G VE +
Sbjct: 382 RTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 441
Query: 218 IKRKNVVPDIFTYNLWISS 236
+ K + PD+ +Y IS
Sbjct: 442 LSCKGLKPDVVSYTTMISG 460
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 140/331 (42%), Gaps = 20/331 (6%)
Query: 71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSD--YA 128
+A + +R S G + + + ILK + ++K A E+ E ++ K+ L Y
Sbjct: 192 NAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYH 251
Query: 129 TRIDLMTKVFGIHSGERYF-----EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERV 183
I + K + F +G+P +++ TY +L+ K K +++++
Sbjct: 252 MMIYMYKKAGNYEKARKVFSSMVGKGVP---QSTVTYNSLMSFETSYKEVSK---IYDQM 305
Query: 184 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 243
++S++ + + Y ++ Y + E+ V EE+ V P YN+ + + A + +
Sbjct: 306 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 365
Query: 244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 303
+Q K M D D W Y +++ Y+ AS + AE + + +TY
Sbjct: 366 EQAKTVFKSMRRDRIFPDLW-SYTTMLSAYVNASDMEGAE-KFFKRIKVDGFEPNIVTYG 423
Query: 304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK-- 361
LI YA + +K+ ++++ +R++ K I+ + G K G + +K
Sbjct: 424 TLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDAS---GRCKNFGSALGWYKEM 480
Query: 362 QSATSDFDISACNRLLGAFSDVGLTEKANEF 392
+S D A N LL S E+A E
Sbjct: 481 ESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/328 (18%), Positives = 138/328 (42%), Gaps = 12/328 (3%)
Query: 71 SATNVIQRWVSEGNQATVSEL-RHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYAT 129
SA V++++ ++G+Q +L L ++ +++ EI EW+ + S+ D+
Sbjct: 85 SAVPVLRQYKTDGDQGLPRDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLM 144
Query: 130 RIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQSN 187
I K+ + ER L T +YTAL+ Y AE +F R++ S
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204
Query: 188 LSFNALMYNEMMTLYMSVGQVEKVALVVEEI---KRKNVVPDIFTYNLWISSCAATLNID 244
+A+ Y ++ ++ + ++ V E + K+ + PD Y++ I N +
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264
Query: 245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 304
+ +K M G V Y +L++ + + S + ++S Q ++Y
Sbjct: 265 KARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEV----SKIYDQMQRSDIQPDVVSYAL 319
Query: 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364
LI Y +++ +++ + + T + Y +L ++ + G +++ + ++
Sbjct: 320 LIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDR 379
Query: 365 TSDFDISACNRLLGAFSDVGLTEKANEF 392
D+ + +L A+ + E A +F
Sbjct: 380 IFP-DLWSYTTMLSAYVNASDMEGAEKF 406
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 130/340 (38%), Gaps = 54/340 (15%)
Query: 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRI 131
A +VI+ + +G S +L L + + + A + E M V Y +
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMV 525
Query: 132 DLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQSNLS 189
D K I ++F + T TYTAL+H Y AK A ELFE +
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585
Query: 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD----------------IFTYNLW 233
N + Y+ ++ + GQVEK + E + VPD + TY
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645
Query: 234 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE---------- 283
+ + +++ +K LD MS + G + + Y L++ L A+
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704
Query: 284 -SSTLVEAEKSI-----TQRQWITYDFL-----------IILYA----GLGNKDKIDQIW 322
+TL I +RQ + L +++Y GL K D+ +
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764
Query: 323 KSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQ 359
K ++M ++K N Y ++ + M+G ++ E++++
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 804
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
YT ++ T++A +L + +++ N + Y M+ + +G++E ++E +
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
K V P+ TY + I C +D L+EM
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 108/250 (43%), Gaps = 7/250 (2%)
Query: 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216
S Y +++ L +AEE F + + + + ++Y ++ + G + +
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 276
E+ +++ PD+ TY IS ++ + K EM C G D V + L+N Y A
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFTELINGYCKA 434
Query: 277 SHLVNA--ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 334
H+ +A + +++A S +TY LI G+ D +++ + +
Sbjct: 435 GHMKDAFRVHNHMIQAGCS---PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNI 491
Query: 335 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 394
Y I++ G+++E +++ ++ ++A + D L+ A+ G +KA E
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550
Query: 395 LLLQKNCAPT 404
+L K PT
Sbjct: 551 EMLGKGLQPT 560
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/234 (17%), Positives = 96/234 (41%), Gaps = 3/234 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
+Y ++H ++A L ++ + + + Y+ ++ Y G+++KV ++E +
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
KRK + P+ + Y I + + ++ EM G D V Y L++ +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM-IRQGILPDTVVYTTLIDGFCKRGD 366
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
+ A S E +TY +I + +G+ + +++ + + S +
Sbjct: 367 -IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 392
+++ Y GH+K+ + + Q+ S ++ L+ G + ANE
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSP-NVVTYTTLIDGLCKEGDLDSANEL 478
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 11/272 (4%)
Query: 138 FGI-HSGERYFE-----GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 191
FG+ R FE GL LS + Y L L T A +F + + +N
Sbjct: 188 FGLLREARRVFEKMLNYGLVLSVDSCNVY--LTRLSKDCYKTATAIIVFREFPEVGVCWN 245
Query: 192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 251
YN ++ +G++++ ++ ++ K PD+ +Y+ ++ +D+V K ++
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305
Query: 252 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 311
M + ++ Y +++ + L AE + E + + Y LI +
Sbjct: 306 VMKRKGLKPNSYI-YGSIIGLLCRICKLAEAEEA-FSEMIRQGILPDTVVYTTLIDGFCK 363
Query: 312 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 371
G+ + + + Y I+S + +G + E G++ + D
Sbjct: 364 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP-DSV 422
Query: 372 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403
L+ + G + A H ++Q C+P
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 147 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 206
FE L+A T TYT L+ Y + +KA+E+ + + L + +N +M + G
Sbjct: 517 FEAAGLNADTV-TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 266
+E ++ + K + P+ T+N + N+ +M C G D Y
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM-CSRGVGPDGKTY 634
Query: 267 VNLVNIYITASHLVNA 282
NLV + A ++ A
Sbjct: 635 ENLVKGHCKARNMKEA 650
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY+AL+ Y + A LF+ +K + + +Y ++ +Y VG+VEK + EE+
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 272
KR P ++TY I +D+ F +M D G + D V NL+NI
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRD-GLTPDVVFLNNLMNI 347
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 109/282 (38%), Gaps = 39/282 (13%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY-------------------- 195
T + YT LL +Y EKA +LFE +K++ S Y
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 196 ---------------NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AA 239
N +M + VG+VE++ V E+ P + +YN I + +
Sbjct: 327 KDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFES 386
Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
++ +V + D+M DS ++ Y L++ Y + + A L E ++
Sbjct: 387 KAHVSEVSSWFDKMKADSVSPSEFT-YSILIDGYCKTNRVEKA-LLLLEEMDEKGFPPCP 444
Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359
Y LI + ++++K L+ ++SR Y ++ + G L E ++ ++
Sbjct: 445 AAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 360 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401
K + D+ A N L+ G+ +AN + + C
Sbjct: 505 MKNQGSGP-DVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 20/277 (7%)
Query: 86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSD--YATRIDLMTKVFGIHSG 143
TV ++K L +S+ H E+S W K +S S+ Y+ ID K +
Sbjct: 371 PTVVSYNTVIKALFESK--AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKA 428
Query: 144 ERYFE-----GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 198
E G P Y +L++ AK E A ELF+ +K++ + ++ +Y M
Sbjct: 429 LLLLEEMDEKGFP---PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 199 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG 258
+ + G++ + + E+K + PD++ YN +S I++ L +M +
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Query: 259 GSDDWVKYVNLVNIYIT--ASHLVNAESSTLVEAEK-SITQRQWITYDFLIILYAGLGNK 315
+D +N NI + A V + + E K S + +TY+ L+ +A G
Sbjct: 546 RAD-----INSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMF 600
Query: 316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 352
++ ++ + ++ + + Y IL + + H K+
Sbjct: 601 EEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 161 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI-K 219
+ L+ AK KA +F + K + YN ++ + M GQ EKV V E+
Sbjct: 166 SELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCN 225
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279
+ PD TY+ ISS D + DEM + + + Y L+ IY +
Sbjct: 226 EGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI-YTTLLGIYFKVGKV 284
Query: 280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 322
A E +++ TY LI GLG ++D+ +
Sbjct: 285 EKA-LDLFEEMKRAGCSPTVYTYTELI---KGLGKAGRVDEAY 323
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 100/239 (41%), Gaps = 15/239 (6%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
Y +++ + E+AE L +++ + +Y+ MM Y V +K +V + +K
Sbjct: 417 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLK 476
Query: 220 RKNVVPDIFTY----NLW--ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
P + TY NL+ + + L + +V K + G + Y ++N +
Sbjct: 477 ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMK-------EEGVKHNLKTYSMMINGF 529
Query: 274 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 333
+ NA + + K + I Y+ +I + G+GN D+ Q K ++ + + T
Sbjct: 530 VKLKDWANA-FAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT 588
Query: 334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 392
+R ++ I+ Y G ++ E+ D ++ + N L+ + EKA E
Sbjct: 589 TRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVP-TVHTFNGLINGLVEKRQMEKAVEI 646
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 2/194 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TYT ++ YA T KA E F R++ L + Y ++ G+++ V +E+
Sbjct: 661 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEM 720
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
+N+ + F YN+ I A ++ + + +M G D Y + ++ A
Sbjct: 721 SARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK-KEGVKPDIHTYTSFISACSKAGD 779
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
+ N + T+ E E + TY LI +A +K ++ ++ K Y
Sbjct: 780 M-NRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYH 838
Query: 339 CILSSYLMLGHLKE 352
C+L+S L + E
Sbjct: 839 CLLTSLLSRASIAE 852
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
T T+ L++ + EKA E+ + + + +S N Y ++M Y SVG K
Sbjct: 623 TVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 682
Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254
++ + + DIFTY + +C + + EMS
Sbjct: 683 TRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY L++LY KA E+ +K+ + N Y+ M+ ++ + V E++
Sbjct: 486 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM 545
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
++ + PD+ YN IS+ N+D+ + + EM
Sbjct: 546 VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/234 (16%), Positives = 99/234 (42%), Gaps = 3/234 (1%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
T+ T+ ++H YA + ++ E+F+ +++ +N ++ + Q+EK ++
Sbjct: 588 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEIL 647
Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
+E+ V + TY + A+ + + ++ + + G D Y L+
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCK 706
Query: 276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
+ + +A + T + ++I + ++ Y+ LI +A G+ + + + ++ K
Sbjct: 707 SGRMQSALAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIH 765
Query: 336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
Y +S+ G + + I++ + +I L+ ++ L EKA
Sbjct: 766 TYTSFISACSKAGDMNRATQTIEEMEALGVKP-NIKTYTTLIKGWARASLPEKA 818
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 109/238 (45%), Gaps = 11/238 (4%)
Query: 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL--- 150
++ L K+ AL++ +++ ++F + Y ID ++K ++ ++ FEG+
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY 920
Query: 151 ---PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 207
P A Y L++ + A + A LF+R+ + + + Y+ ++ VG+
Sbjct: 921 GCRPNCA----IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 267
V++ +E+K + PD+ YNL I+ + +++ +EM G + D Y
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 325
+L+ + + + +V E +++ + T++ LI Y+ G + +++++
Sbjct: 1037 SLI-LNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 5/183 (2%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
T+ TY + Y + + A E FE++K ++ N + N + G+ + +
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
+K +VPD TYN+ + + ID+ K L EM ++G D + +L+N
Sbjct: 492 YGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM-ENGCEPDVIVVNSLINTLYK 550
Query: 276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
A + A + E + + +TY+ L+ AGLG KI + + QK
Sbjct: 551 ADRVDEAWKMFMRMKEMKL-KPTVVTYNTLL---AGLGKNGKIQEAIELFEGMVQKGCPP 606
Query: 336 NYI 338
N I
Sbjct: 607 NTI 609
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 86/209 (41%), Gaps = 8/209 (3%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
+Y L+HL +++ +A E++ R+ + Y+ +M ++ V +++E+
Sbjct: 190 SYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM 249
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
+ + P+++T+ + I I++ + L M D G D V Y L++ TA
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD-DEGCGPDVVTYTVLIDALCTARK 308
Query: 279 LVNAESSTLVEAEKSITQRQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
L A+ EK T R +TY L+ ++ + D + Q W +
Sbjct: 309 LDCAKEV----FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVV 364
Query: 336 NYICILSSYLMLGHLKEVGEIIDQWKQSA 364
+ ++ + G+ E + +D +
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQG 393
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)
Query: 144 ERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 203
E++ + L + K TY L+ A E A+++F +VK + + YN ++ Y
Sbjct: 773 EKFTKDLGVQPKLP-TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG 831
Query: 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 263
G+++++ + +E+ + T+N+ IS N+D ++ D S
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891
Query: 264 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYDFLIILYAGLGNKDKIDQIW 322
Y L++ + L E+ L E R Y+ LI + G D ++
Sbjct: 892 CTYGPLIDGLSKSGRLY--EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949
Query: 323 KSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSA 364
K RM K+ + + Y ++ M+G + E + K+S
Sbjct: 950 K--RMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
T TY LL ++A ELFE + Q N + +N TL+ + + ++V L +
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFN---TLFDCLCKNDEVTLAL 628
Query: 216 E---EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
+ ++ VPD+FTYN I + + F +M
Sbjct: 629 KMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 7/247 (2%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TYT L+ A+ + A+E+FE++K + + Y ++ + ++ V E+
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM 354
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
++ VPD+ T+ + + + N + LD M D G + Y L+ + H
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR-DQGILPNLHTYNTLI-CGLLRVH 412
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
++ E + TY I Y G D + + +M + +
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG--DSVSALETFEKMKTKGIAPNIVA 470
Query: 339 CILSSYLM--LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 396
C S Y + G +E +I K D N ++ +S VG ++A + +
Sbjct: 471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Query: 397 LQKNCAP 403
++ C P
Sbjct: 530 MENGCEP 536
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 133/317 (41%), Gaps = 18/317 (5%)
Query: 93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPL 152
HIL+ L +++ H I E + + + D D A + K +G +S + L +
Sbjct: 48 HILRRLSETRMVNHVSRIVELIRSQE--CKCDEDVALSV---IKTYGKNSMPD--QALDV 100
Query: 153 SAKTSE---------TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 203
+ E +Y LL+ + AK K E LF + + ++ N YN ++ +
Sbjct: 101 FKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSC 160
Query: 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 263
+ EK ++ + ++ PD+F+Y+ I+ A +D + DEMS + G + D
Sbjct: 161 KKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMS-ERGVAPDV 219
Query: 264 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 323
Y L++ ++ A E S T++ +I + G D +IW+
Sbjct: 220 TCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWE 279
Query: 324 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 383
++ +++ Y ++ G++ + + ++ + S D+ N +LG F
Sbjct: 280 RMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKAS-IDVVTYNTMLGGFCRC 338
Query: 384 GLTEKANEFHMLLLQKN 400
G +++ E ++ KN
Sbjct: 339 GKIKESLELWRIMEHKN 355
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY++L+H A +KAE +F + + S + + YN M+ + G++++ + +
Sbjct: 292 TYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM 351
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQ 245
+ KN V +I +YN+ I ID+
Sbjct: 352 EHKNSV-NIVSYNILIKGLLENGKIDE 377
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217
+TY+ LL + + A EL+ + QS L + +M+N ++ SVG+++ V+
Sbjct: 535 KTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMAN 594
Query: 218 IKRKNVVPDIFTYN 231
++ +N ++ TYN
Sbjct: 595 MEHRNCTANLVTYN 608
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 38/93 (40%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
+ L+H + A + ++ N + N + YN +M + VG + ++ +
Sbjct: 572 HNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMY 631
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 252
+ + PDI +YN + + +F D+
Sbjct: 632 KMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDD 664
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 141/337 (41%), Gaps = 19/337 (5%)
Query: 75 VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSD---YATRI 131
+ Q+ G + TV +++ K R AL + + M + D+D Y I
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSS----LDADIVLYNVCI 245
Query: 132 DLMTKVFGIHSGERYFEGLPLSA-KTSE-TYTALLHLYAGAKWTEKAEELFERVKQSNLS 189
D KV + ++F + + K E TYT+++ + A ++A E+FE ++++
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 249
YN M+ Y S G+ ++ ++E + K +P + YN ++ +D+ K
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKV 365
Query: 250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYDFLIIL 308
+EM D+ + + Y L+++ A L T E S+ + + + I+
Sbjct: 366 FEEMKKDA--APNLSTYNILIDMLCRAGKL-----DTAFELRDSMQKAGLFPNVRTVNIM 418
Query: 309 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 368
L K+D+ K+ + + I S LG + V + +++ SD
Sbjct: 419 VDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDC 478
Query: 369 DISAC--NRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403
++ L+ F + G E ++ + ++ +NC+P
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 10/238 (4%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
YT L+ ++ ++ LF+++++ ++ ++ + G+V+ +++E+
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM 229
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K ++ DI YN+ I S +D KF E+ + G D V Y +++ + A+
Sbjct: 230 KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANR 288
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
L A EK+ +R TY + ++ G G+ K D+ + L + K + + I
Sbjct: 289 LDEA-VEMFEHLEKN--RRVPCTYAYNTMI-MGYGSAGKFDEAYSLLERQRAKGSIPSVI 344
Query: 339 ---CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 393
CIL+ +G + E ++ ++ K+ A ++S N L+ G + A E
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKKDAAP--NLSTYNILIDMLCRAGKLDTAFELR 400
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 112/300 (37%), Gaps = 50/300 (16%)
Query: 129 TRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQS 186
T +D M K G FE + + +Y+ L+H A + + ELF +K+
Sbjct: 522 TYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ 581
Query: 187 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 246
+ YN ++ + G+V K ++EE+K K P + TY I A +D+
Sbjct: 582 GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA 641
Query: 247 KKFLDEMSCD---------SGGSDDWVKYVNLVNIYITASHLV-----------NAESST 286
+E S D + K + Y+ L+ N+
Sbjct: 642 YMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Query: 287 LVEAEK--------------SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 332
LV+AE+ T Q +TY LI + +K W+ ++ K
Sbjct: 702 LVKAEEINEALVCFQSMKELKCTPNQ-VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760
Query: 333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC-----------NRLLGAFS 381
++ +Y ++S G++ E G + D++K A SAC NR + AFS
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFK--ANGGVPDSACYNAMIEGLSNGNRAMDAFS 818
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 11/278 (3%)
Query: 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS 153
++ L KSQ+ A + E M +K + + + ID + KV + + +E + S
Sbjct: 418 MVDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDS 476
Query: 154 --AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 211
S YT+L+ + E ++++ + N S + + N M G+ EK
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKG 536
Query: 212 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 271
+ EEIK + VPD +Y++ I ++ + M + G D Y +++
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMK-EQGCVLDTRAYNIVID 595
Query: 272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 331
+ VN L E + + +TY +I GL D++D+ + K K
Sbjct: 596 GFCKCGK-VNKAYQLLEEMKTKGFEPTVVTYGSVI---DGLAKIDRLDEAYMLFEEAKSK 651
Query: 332 MTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATS 366
N Y ++ + +G + E I+++ Q +
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT 689
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 137/328 (41%), Gaps = 16/328 (4%)
Query: 85 QATVSELRHILKELRKSQRYKHALEISEWM-VTHKEFVLSDSDYATRIDLMTKVFGIHSG 143
Q T ++ ++K + + + ++ ALE+ EW+ + H S A + + V G +
Sbjct: 153 QMTPTDYCFVVKSVGQ-ESWQRALEVFEWLNLRHWH-----SPNARMVAAILGVLGRWNQ 206
Query: 144 ER-----YFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 198
E + P + Y A++ +Y+ + KA+EL + ++Q + + +N +
Sbjct: 207 ESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTL 266
Query: 199 MTLYM-SVGQVEKVAL-VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 256
+ + S G +A+ +++ ++ + PD TYN +S+C+ N+D K ++M
Sbjct: 267 INARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH 326
Query: 257 SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 316
D W Y ++++Y AE +E E +TY+ L+ +A N +
Sbjct: 327 RCQPDLWT-YNAMISVYGRCGLAAEAE-RLFMELELKGFFPDAVTYNSLLYAFARERNTE 384
Query: 317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 376
K+ ++++ ++ Y I+ Y G L ++ K + + D L
Sbjct: 385 KVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVL 444
Query: 377 LGAFSDVGLTEKANEFHMLLLQKNCAPT 404
+ + T +A +L PT
Sbjct: 445 IDSLGKANRTVEAAALMSEMLDVGIKPT 472
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY A++ +Y +AE LF ++ +A+ YN ++ + EKV V +++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
++ D TYN I +D + +M SG + D + Y L++ A+
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
V A ++ + E + TY LI YA G +++ + + + + K + Y
Sbjct: 454 TVEA-AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYS 512
Query: 339 CILSSYL 345
+L L
Sbjct: 513 VMLDVLL 519
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 92/186 (49%), Gaps = 2/186 (1%)
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
+ ++L +Y + +K ++++R+K++ L + YN ++ +Y + E+ L++++++
Sbjct: 930 WNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMR 989
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279
+ P + TY IS+ ++Q ++ +E+ G D Y ++ I +
Sbjct: 990 NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEEL-LSKGLKLDRSFYHTMMKISRDSGSD 1048
Query: 280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 339
AE L + + + T L++ Y+ GN + +++ +L+ T+ ++T+ Y
Sbjct: 1049 SKAE-KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSS 1107
Query: 340 ILSSYL 345
++ +YL
Sbjct: 1108 VIDAYL 1113
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217
+TY +L+ + K E+AE+LFE + L + Y+ MM + G K +++
Sbjct: 998 DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057
Query: 218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 274
+K + P + T +L + S +++ N + +K L + D+ + Y ++++ Y+
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLK-DTEVELTTLPYSSVIDAYL 1113
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Query: 70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYAT 129
R+ N + R +G TV + +L L R + + E + F +S S
Sbjct: 807 RAIFNTMMR---DGPSPTVESINILLHALCVDGRLEELYVVVEEL-QDMGFKISKSSILL 862
Query: 130 RIDLMTKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSN 187
+D + I ++ + + + T Y ++ L K AE + ++++N
Sbjct: 863 MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922
Query: 188 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234
++N M+ +Y ++ +K V + IK + PD TYN I
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 99/244 (40%), Gaps = 8/244 (3%)
Query: 165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 224
L +G A EL + V+ S L +A+ YN +++ ++ V E+++
Sbjct: 270 RLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQ 329
Query: 225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284
PD++TYN IS + ++ E+ G D V Y +L+ + N E
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELEL-KGFFPDAVTYNSLLYAFARER---NTEK 385
Query: 285 STLV--EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR-MTKQKMTSRNYICIL 341
V + +K + +TY+ +I +Y G D Q++K ++ ++ + + Y ++
Sbjct: 386 VKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLI 445
Query: 342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401
S E ++ + + + L+ ++ G E+A + +L+
Sbjct: 446 DSLGKANRTVEAAALMSEMLDVGIKP-TLQTYSALICGYAKAGKREEAEDTFSCMLRSGT 504
Query: 402 APTN 405
P N
Sbjct: 505 KPDN 508
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216
S YT ++ Y K +KAE + ++QS + + +N +M+ Y G E+ +
Sbjct: 752 SPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFN 811
Query: 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
+ R P + + N+ + + ++++ ++E+
Sbjct: 812 TMMRDGPSPTVESINILLHALCVDGRLEELYVVVEEL 848
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 125/327 (38%), Gaps = 45/327 (13%)
Query: 70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYAT 129
+ A ++ + EG V ++ L K K A+E+ + M+T
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD----------- 360
Query: 130 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLS 189
+ + TY L+ E+A EL + +
Sbjct: 361 -----------------------CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397
Query: 190 FNALMYNEMMTLYMSVGQVEKVAL-VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 248
+ +N ++ + + + +VA+ + EE++ K PD FTYN+ I S + +D+
Sbjct: 398 PDVCTFNSLIQ-GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL 308
L +M SG + + Y L++ + A+ AE E E R +TY+ LI
Sbjct: 457 MLKQMEL-SGCARSVITYNTLIDGFCKANKTREAE-EIFDEMEVHGVSRNSVTYNTLI-- 512
Query: 309 YAGLGNKDKID---QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 365
GL +++ Q+ + M QK Y +L+ + G +K+ +I+ Q S
Sbjct: 513 -DGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV-QAMTSNG 570
Query: 366 SDFDISACNRLLGAFSDVGLTEKANEF 392
+ DI L+ G E A++
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKL 597
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 98/245 (40%), Gaps = 3/245 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY +++ ++A E+ +++ + S N + YN +++ QVE+ + +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K ++PD+ T+N I T N + +EM G D Y L++ +
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR-SKGCEPDEFTYNMLIDSLCSKGK 450
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
L A + L + E S R ITY+ LI + + ++I+ + + S Y
Sbjct: 451 LDEA-LNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYN 509
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398
++ +++ +++DQ D N LL F G +KA + +
Sbjct: 510 TLIDGLCKSRRVEDAAQLMDQMIMEGQKP-DKYTYNSLLTHFCRGGDIKKAADIVQAMTS 568
Query: 399 KNCAP 403
C P
Sbjct: 569 NGCEP 573
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 127 YATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVK 184
Y T ID K E F+ + + ++ S TY L+ ++ E A +L +++
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532
Query: 185 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 244
+ YN ++T + G ++K A +V+ + PDI TY IS ++
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592
Query: 245 QVKKFL 250
K L
Sbjct: 593 VASKLL 598
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 87/209 (41%), Gaps = 4/209 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
T+ L++ A + A E+ + + Q + YN +++ +G+V++ V++++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV-NIYITAS 277
++ P+ TYN IS+ +++ + L + G D + +L+ + +T +
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATE-LARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 337
H V E E + TY+ LI G D+ + K + ++ + Y
Sbjct: 416 HRVAME--LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITY 473
Query: 338 ICILSSYLMLGHLKEVGEIIDQWKQSATS 366
++ + +E EI D+ + S
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVS 502
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 136 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 195
K F +H E +G+ T TYT+L+++ T +A+ELFE+V + + +M
Sbjct: 415 KAFALHD-EMMTDGI---QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMM 470
Query: 196 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 255
N +M + ++G +++ +++E+ ++ PD TYN + ++ ++ + EM
Sbjct: 471 NTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMK- 529
Query: 256 DSGGSDDWVKYVNLVNIY 273
G D + Y L++ Y
Sbjct: 530 RRGIKPDHISYNTLISGY 547
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 14/214 (6%)
Query: 181 ERVKQSNL----SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236
E VKQ + ++N L++ L+M ++E +++ EI+ K +V D TYN+ I+
Sbjct: 352 EMVKQGMVPTFYTYNTLIHG----LFME-NKIEAAEILIREIREKGIVLDSVTYNILING 406
Query: 237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 296
+ + DEM D G Y +L IY+ E+ L E
Sbjct: 407 YCQHGDAKKAFALHDEMMTD-GIQPTQFTYTSL--IYVLCRKNKTREADELFEKVVGKGM 463
Query: 297 RQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 355
+ + + L+ + +GN D+ + K + M Y C++ G +E E
Sbjct: 464 KPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARE 523
Query: 356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
++ + K+ IS N L+ +S G T+ A
Sbjct: 524 LMGEMKRRGIKPDHISY-NTLISGYSKKGDTKHA 556
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY L+ ++ E A + +K + YN +++ + G+ + V+ E+
Sbjct: 262 TYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE---VLREM 318
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K +VPD +YN+ I C+ +++ + DEM G + Y L++ +
Sbjct: 319 KEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEM-VKQGMVPTFYTYNTLIHGLFMENK 377
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 317
+ AE EK I +TY+ LI Y G+ K
Sbjct: 378 IEAAEILIREIREKGIVL-DSVTYNILINGYCQHGDAKK 415
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY L+ G E+A EL +K+ + + + YN +++ Y G + +V +E+
Sbjct: 504 TYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEM 563
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 262
P + TYN + + + ++ L EM + +D
Sbjct: 564 LSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPND 607
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
T+ ++++ +KA+ ++ + + YN ++ + G++E L++ E+
Sbjct: 227 TFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEM 286
Query: 219 KRKNVVPDIFTYNLWIS 235
K K PD+ TYN +S
Sbjct: 287 KSKGFQPDMQTYNPILS 303
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
T+TAL+ ++ ++A+EL++ + QS++ N + YN ++ G++ + +
Sbjct: 248 TFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM 307
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K P++ TYN IS +D+ K MSC+ G + D Y L++ Y
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIHGYCQVGK 366
Query: 279 L------------------------------VNAE-SSTLVEAEKSITQRQWITYDFLII 307
L VN E S LV+ + ++I I
Sbjct: 367 LRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNI 426
Query: 308 LYAGLGNKDKIDQIWK---SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364
+ GL DK+++ W+ L + K +R Y ++ G +E E+I + K+
Sbjct: 427 MIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235
A EL +++ L + + YN ++T G+ A ++ ++ ++++ PD+ T+ I
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254
Query: 236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295
N+D+ ++ EM S + V Y +++N L +A+ + + A K
Sbjct: 255 VFVKQGNLDEAQELYKEM-IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCF 313
Query: 296 QRQWITYDFLIILYAGLGNKDKIDQIWKSL-RMTKQKMTSR--NYICILSSYLMLGHLK 351
+TY+ LI +G +D+ K RM+ + + Y ++ Y +G L+
Sbjct: 314 P-NVVTYNTLI---SGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 7/247 (2%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
T+ +LLH + A L + +S N ++YN ++ G++ ++ E+
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEM 202
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
++K + D+ TYN ++ + + L +M S + D V + L+++++ +
Sbjct: 203 EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS-INPDVVTFTALIDVFVKQGN 261
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
L A+ E +S +TY+ +I GL ++ K+ + K N +
Sbjct: 262 LDEAQ-ELYKEMIQSSVDPNNVTYNSII---NGLCMHGRLYDAKKTFDLMASKGCFPNVV 317
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAFSDVGLTEKANEFHMLL 396
+ + V E + +++ + F DI N L+ + VG A + +
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377
Query: 397 LQKNCAP 403
+ + P
Sbjct: 378 VSRRVTP 384
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 43/249 (17%), Positives = 96/249 (38%), Gaps = 8/249 (3%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
++T L+H + A + ++ + + + + ++ + V ++ +V +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
+ P++ YN I ++ + L+EM G D V Y L+ +
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEME-KKGLGADVVTYNTLLTGLCYSGR 226
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
+A + L + K +T+ LI ++ GN D+ +++K + + + Y
Sbjct: 227 WSDA-ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYN 285
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398
I++ M G L + + D ++ N L+ F + ++ M L Q
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFP-NVVTYNTLISGFCKFRMVDEG----MKLFQ 340
Query: 399 K-NCAPTNA 406
+ +C NA
Sbjct: 341 RMSCEGFNA 349
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TYT L+ G T++A +L + + + NA+ YN ++ G V +VE +
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELM 378
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITAS 277
K++ PD TYN+ + A ++D+ K L M DS +D D + Y L++ +
Sbjct: 379 KKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKEN 438
Query: 278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 337
L A + EK + +T + L+ G+ +K ++WK + +K S Y
Sbjct: 439 RLHQALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497
Query: 338 ICILSSYLMLGHL 350
++ + G L
Sbjct: 498 TAMIDGFCKTGML 510
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 154 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213
+ S+TYTA++ + A+ L +++ S L + YN +++ G +++
Sbjct: 491 VRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWR 550
Query: 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
+ EE++R N PD+ ++N+ I +I + L MS +G S D Y L+N +
Sbjct: 551 LFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMS-RAGLSPDLFTYSKLINRF 609
Query: 274 ITASHLVNAES 284
+ +L A S
Sbjct: 610 LKLGYLDEAIS 620
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
+Y ++ + K EKA EL +K S S++ + + ++ + G++++ ++E+
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K + D+ Y I +D+ K DE+ + G S + Y L+ +
Sbjct: 239 KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGQ 297
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338
L A E+ + + TY LI G+G + Q+ + ++ + Y
Sbjct: 298 LKEASEIFEFMIERGVRPNVY-TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYN 356
Query: 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398
I++ G + + EI++ K+ T +I+ N LLG G ++A++ L+L+
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITY-NILLGGLCAKGDLDEASKLLYLMLK 415
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 152 LSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 211
L A T LL+ A KA EL++++ S + N+ Y M+ + G +
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 212 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 271
++ +++ + P +F YN +SS ++DQ + +EM D+ D V + +++
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFP-DVVSFNIMID 572
Query: 272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 317
+ A + +AE S LV ++ TY LI + LG D+
Sbjct: 573 GSLKAGDIKSAE-SLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 3/233 (1%)
Query: 175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234
KA L +++++L + YN ++ + ++EK + E+K + T+ + I
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILI 219
Query: 235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 294
+ +D+ FL EM G D V Y +L+ + L + + E +
Sbjct: 220 DAFCKAGKMDEAMGFLKEMKF-MGLEADLVVYTSLIRGFCDCGEL-DRGKALFDEVLERG 277
Query: 295 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 354
ITY+ LI + LG + +I++ + + Y ++ +G KE
Sbjct: 278 DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 355 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
++++ + ++ N ++ GL A E L+ ++ P N +
Sbjct: 338 QLLNLMIEKDEEPNAVTY-NIIINKLCKDGLVADAVEIVELMKKRRTRPDNIT 389
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 104/286 (36%), Gaps = 56/286 (19%)
Query: 109 EISEWMVTH--KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL 166
E+SE V K+ + + D + L+ KVF A S YT L+
Sbjct: 379 EVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVF---------------APDSRIYTTLMKG 423
Query: 167 Y---AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 223
Y T + E R N + + Y +++ +++ G +++ V+ E+ R V
Sbjct: 424 YMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGV 483
Query: 224 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283
+ TYN+ + L ID+ + L EM+ D+G D V Y NI I L++
Sbjct: 484 PANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSY----NIIIDGCILIDDS 539
Query: 284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 343
+ L + +R T +Y ++ +
Sbjct: 540 AGALA--------------------------------FFNEMRTRGIAPTKISYTTLMKA 567
Query: 344 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
+ M G K + D+ D+ A N L+ + +GL E A
Sbjct: 568 FAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDA 613
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 153 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 212
S + + A+L+ A T+K +LFE + + + + L YN M+ L VG+ E +
Sbjct: 232 SRPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIV 291
Query: 213 LVVEEIKRKNV 223
V+E I K +
Sbjct: 292 FVLERIIDKGI 302
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 154 AKTSETYTALLHLYAGAKWTEKAEELF-ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 212
A T +YT L+ +A + + A +F E + + + + +N ++ Y +G +E
Sbjct: 555 APTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQ 614
Query: 213 LVVEEIKRKNVVPDIFTYN 231
VV +K P++ TY
Sbjct: 615 RVVSRMKENGFYPNVATYG 633
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 147 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 206
F+G +S E Y LL Y K EK + +R+K+S + YN M+ +Y G
Sbjct: 761 FDGFSVSL---EAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQG 817
Query: 207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 266
+++VA V++E+K + PD+ +YN I + +++ + EM + D V Y
Sbjct: 818 WIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDK-VTY 876
Query: 267 VNLV 270
NLV
Sbjct: 877 TNLV 880
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/241 (19%), Positives = 99/241 (41%), Gaps = 4/241 (1%)
Query: 163 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 222
+L +Y +K + L+ R+++S + +N MYN ++ +++++ EE+ R
Sbjct: 635 MLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYG 694
Query: 223 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 282
P+ T+N+ + +V + + G D + Y ++ Y N
Sbjct: 695 FTPNTVTFNVLLDVYGKAKLFKKVNELF--LLAKRHGVVDVISYNTIIAAYGKNKDYTNM 752
Query: 283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 342
SS + + Y+ L+ Y +K I K ++ + Y +++
Sbjct: 753 -SSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMIN 811
Query: 343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA 402
Y G + EV +++ + K+S D+ + N L+ A+ G+ E+A + +N
Sbjct: 812 IYGEQGWIDEVADVLKELKESGLGP-DLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNII 870
Query: 403 P 403
P
Sbjct: 871 P 871
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSN----LSFNALM-------------------- 194
T+ LL +Y AK +K ELF K+ +S+N ++
Sbjct: 701 TFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQ 760
Query: 195 ----------YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 244
YN ++ Y Q+EK +++ +K+ PD +TYN+ I+ ID
Sbjct: 761 FDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWID 820
Query: 245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273
+V L E+ +SG D Y L+ Y
Sbjct: 821 EVADVLKELK-ESGLGPDLCSYNTLIKAY 848
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
Y++++ +Y + +KAEE+ + +KQ + + M+ Y G++E ++ +
Sbjct: 281 AYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM 340
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 270
+ P+I YN I+ ++ + + C+ G D Y +++
Sbjct: 341 EAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRL-CNIGLEPDETSYRSMI 391
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 47/255 (18%)
Query: 119 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--------TYTALLHLYAGA 170
E ++S + + T + G +R EG+ L + S+ TYT L+H + A
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 446
Query: 171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY 230
+ + A+ +F+++ + N L YN ++ G++ K +V E ++R + PDI+TY
Sbjct: 447 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506
Query: 231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDD-WVKYVNLVNIYITASHLVNAESSTLVE 289
N+ I E C +G +D W + NL
Sbjct: 507 NIMI-----------------EGMCKAGKVEDGWELFCNL-------------------- 529
Query: 290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349
+ K ++ I Y+ +I + G+K++ D + K ++ S Y ++ + L G
Sbjct: 530 SLKGVSP-NVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
Query: 350 LKEVGEIIDQWKQSA 364
+ E+I + +
Sbjct: 589 REASAELIKEMRSCG 603
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 47/250 (18%), Positives = 104/250 (41%), Gaps = 13/250 (5%)
Query: 159 TYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217
TY++L+ +W++ A L + + ++ N + ++ ++ ++ G++ + + +E
Sbjct: 295 TYSSLISCLCNYGRWSD-ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353
Query: 218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277
+ ++++ PDIFTY+ I+ +D+ K E+ + V Y L+ + A
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYSTLIKGFCKAK 412
Query: 278 HLVNAESSTLVEAEKSITQRQW----ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 333
+ +E + ++QR +TY LI + + D ++K +
Sbjct: 413 RVEEG-----MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467
Query: 334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 393
Y +L G L + ++ ++ Q +T + DI N ++ G E E
Sbjct: 468 ILTYNILLDGLCKNGKLAK-AMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526
Query: 394 MLLLQKNCAP 403
L K +P
Sbjct: 527 CNLSLKGVSP 536
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 15/251 (5%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERV-----KQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213
T ++LL+ Y +K A L +++ K +F L++ L++ E VAL
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHG----LFLHNKASEAVAL 210
Query: 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNI 272
V + ++R PD+ TY ++ +ID L +M + G + D V Y +++
Sbjct: 211 VDQMVQR-GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYNTIIDG 267
Query: 273 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 332
H+ +A + E + + TY LI G ++ + K
Sbjct: 268 LCKYKHMDDA-LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326
Query: 333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 392
+ ++ +++ G L E ++ D+ + + D DI + L+ F ++A
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 393 HMLLLQKNCAP 403
L++ K+C P
Sbjct: 386 FELMISKDCFP 396
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/370 (20%), Positives = 148/370 (40%), Gaps = 51/370 (13%)
Query: 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHK----EFVLSDS-DYATRIDLMTKVFG 139
+ V L ++ L KS+R ALE+ E M + + +DS + T ID + KV
Sbjct: 326 RPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGR 385
Query: 140 IHSGERYFEGLPLSAK---TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN 196
+ E + L + + TY L+ Y A E A+E+ R+K+ + N + N
Sbjct: 386 LKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVN 445
Query: 197 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM--- 253
++ + + +++++ V ++ TY I +C + N+++ + ++M
Sbjct: 446 TIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEA 505
Query: 254 SC-------------------------------DSGGSDDWVKYVNLVNIYITASHLVNA 282
C + G S D + Y L+ ++ + NA
Sbjct: 506 GCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKN---NA 562
Query: 283 ES--STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI 340
E L + EK + ITY+ LI + + + ++++ + +R T Y +
Sbjct: 563 EKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAV 622
Query: 341 LSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA----NEFHMLL 396
+ +Y +G L E ++ + + + N L+ AFS +G +A E M +
Sbjct: 623 IDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKM 682
Query: 397 LQKNCAPTNA 406
++ N NA
Sbjct: 683 VRPNVETYNA 692
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216
++TYT L++ + AEE+F ++ ++ + Y ++ + +G ++K + + +
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Query: 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 276
E+ + + P++ YN+ + + I++ K+ LDEMS G + V Y +++ Y +
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV-KGLHPNAVTYCTIIDGYCKS 710
Query: 277 SHLVNA 282
L A
Sbjct: 711 GDLAEA 716
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY ++ + + A + + + S N ++Y ++ ++ + V++E+
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278
K + + PDIF YN I + +D+ + FL EM ++G + Y ++ YI AS
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM-VENGLKPNAFTYGAFISGYIEASE 537
Query: 279 LVNAESSTLVEAEKSITQRQWITYDFL-------------------------------II 307
+A+ E + + + + +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 308 LYAGLGNKDKID---QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364
L GL DK+D +I++ +R +Y +++ + LG++++ I D+ +
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 365 TSDFDISACNRLLGAFSDVGLTEKANEF 392
+ ++ N LLG F G EKA E
Sbjct: 658 LTP-NVIIYNMLLGGFCRSGEIEKAKEL 684
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 125/324 (38%), Gaps = 44/324 (13%)
Query: 127 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSET--YTALLHLYAGAKWTEKAEELFERVK 184
Y I+ +K+ + F+ + T Y LL + + EKA+EL + +
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMS 689
Query: 185 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA------ 238
L NA+ Y ++ Y G + + + +E+K K +VPD F Y + C
Sbjct: 690 VKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVE 749
Query: 239 -----------------ATLN--IDQVKKF------------LDEMSCDSGGSDDWVKYV 267
A N I+ V KF L + S D G + V Y
Sbjct: 750 RAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTY- 808
Query: 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 327
N++ Y+ + A + + + ITY L+ Y +G + ++ ++
Sbjct: 809 NIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIA 868
Query: 328 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ-WKQSATSD---FDISACNRLLGAFSDV 383
+ Y I++++L G + ++DQ + ++A D IS C LL F+ V
Sbjct: 869 AGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKV 928
Query: 384 GLTEKANEFHMLLLQKNCAPTNAS 407
G E A + +++ P +A+
Sbjct: 929 GEMEVAEKVMENMVRLQYIPDSAT 952
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 109/268 (40%), Gaps = 39/268 (14%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
+Y L++ ++ +KA +F+ + + L+ N ++YN ++ + G++EK +++E+
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN------- 271
K + P+ TY I + ++ + + DEM D +V Y LV+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFV-YTTLVDGCCRLND 747
Query: 272 ----IYITASHLVNAESSTL--------------VEAEKSITQRQW------------IT 301
I I ++ SST E + + R +T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807
Query: 302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 361
Y+ +I GN + +++ ++ T Y +L+ Y +G E+ + D+
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE-A 866
Query: 362 QSATSDFDISACNRLLGAFSDVGLTEKA 389
+A + D + ++ AF G+T KA
Sbjct: 867 IAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/299 (17%), Positives = 117/299 (39%), Gaps = 17/299 (5%)
Query: 71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR 130
A N+++ ++ G + V ++K ++ R+ A+ + + M KE ++ +
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM---KEQGIAPDIFCYN 491
Query: 131 IDLMTKVFGIHSGERYFEGLPLSAKTSE--------TYTALLHLYAGAKWTEKAEELFER 182
+ + G+ +R E + E TY A + Y A A++ +
Sbjct: 492 ----SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 183 VKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 242
+++ + N ++ ++ Y G+V + + + ++ D TY + ++
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607
Query: 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 302
+D ++ EM G + D Y L+N + ++ A S E+ +T I Y
Sbjct: 608 VDDAEEIFREMR-GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP-NVIIY 665
Query: 303 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 361
+ L+ + G +K ++ + + + Y I+ Y G L E + D+ K
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 233
EKA+ LF+ + S L A Y ++ Y V + ++ E+K++N+V +TY
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTV 423
Query: 234 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 293
+ ++ ++D + EM SG + V Y L+ ++ S +A L E ++
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIA-SGCRPNVVIYTTLIKTFLQNSRFGDA-MRVLKEMKEQ 481
Query: 294 ITQRQWITYDFLIILYAGLGNKDKIDQ 320
Y+ LII GL ++D+
Sbjct: 482 GIAPDIFCYNSLII---GLSKAKRMDE 505
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 123 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAE--E 178
+D Y ID + K + + + F + + T TYT+LL+ Y K +AE
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD--KMGRRAEMFP 861
Query: 179 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 238
+F+ + + + +MY+ ++ ++ G K ++V+++ KN V D L IS+C
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDD--GCKLSISTCR 919
Query: 239 ATLN 242
A L+
Sbjct: 920 ALLS 923
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/341 (21%), Positives = 148/341 (43%), Gaps = 34/341 (9%)
Query: 63 FRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMV--THKEF 120
F++SL A +++ + + G + + ++ + R A+ + + MV +K
Sbjct: 134 FQVSL----ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD 189
Query: 121 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA--KTSETYTALLH-LYAGAKWTEKAE 177
+++ Y ID + K ++ +F+ + TYTAL++ L ++W++ A
Sbjct: 190 IVA---YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246
Query: 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237
L + +K+ ++ N + Y+ ++ ++ G+V + + EE+ R ++ PDI TY+ I+
Sbjct: 247 LLSDMIKK-KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305
Query: 238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 297
ID+ + D M G D V Y L+N + A + + ++ + ++QR
Sbjct: 306 CLHDRIDEANQMFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDG-----MKLFREMSQR 359
Query: 298 QW----ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 353
+TY+ LI + G+ DK + + + Y ++LG L +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY------NILLGGLCDN 413
Query: 354 GE-----IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
GE +I + Q D DI ++ G E+A
Sbjct: 414 GELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 454
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRI 131
A + VS+G A V ++ K++R + +++ M + + V + Y T I
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLI 372
Query: 132 DLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQSNLS 189
+ + + +F + + + TY LL EKA +FE +++ +
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236
+ + Y ++ G+VE+ + + K + PDI TY +S
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/361 (20%), Positives = 147/361 (40%), Gaps = 26/361 (7%)
Query: 44 CLDEETSNSDGKDDLKSRIFRIS-LPKRSATNVIQRWVSEGNQATVS-ELRHILKELRKS 101
C D+ TS D D + R+ + +P + N++ + + + N++ + EL H++ + R
Sbjct: 133 CADKRTS--DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGG 190
Query: 102 QRYKHALEISEWMVTHKEFVLSDSD--YATRIDLMTKVFGIHSGERYFEGLPLSAKTSET 159
+S V + F DSD Y+T +++ + GI LP T
Sbjct: 191 GSPPDV--VSYTTVINGFFKEGDSDKAYSTYHEMLDR--GI---------LP----DVVT 233
Query: 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219
Y +++ A+ +KA E+ + ++ + + + YN ++ Y S GQ ++ +++++
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279
V PD+ TY+L + + +K D M+ G + Y L+ Y T L
Sbjct: 294 SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT-KRGLKPEITTYGTLLQGYATKGAL 352
Query: 280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 339
V + I ++ + LI YA G D+ ++ +R + Y
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411
Query: 340 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399
++ G +++ +Q S +I N L+ E+A E + +L +
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNI-VYNSLIHGLCTCNKWERAEELILEMLDR 470
Query: 400 N 400
Sbjct: 471 G 471
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 12/186 (6%)
Query: 127 YATRIDLMTKVFGIHSGERYFE-----GLPLSAKTSETYTALLH-LYAGAKWTEKAEELF 180
Y I ++ K + YFE GL + + Y +L+H L KW E+AEEL
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGL---SPGNIVYNSLIHGLCTCNKW-ERAEELI 464
Query: 181 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 240
+ + N + +N ++ + G+V + + E + R V P++ TYN I+
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524
Query: 241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI 300
+D+ K L M G + V Y L+N Y S + +A E E S I
Sbjct: 525 GKMDEAMKLLSGM-VSVGLKPNTVTYSTLINGYCKISRMEDA-LVLFKEMESSGVSPDII 582
Query: 301 TYDFLI 306
TY+ ++
Sbjct: 583 TYNIIL 588
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218
TY +LH K T+ A ++F+ + +L A +N M+ + VG+ ++ +
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677
Query: 219 KRKNVVPDIFTYNLW 233
+VP+ +TY L
Sbjct: 678 SSNGLVPNYWTYRLM 692
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
Query: 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV-ALVVEE 217
TY A++ + + E A FE++ LS ++YN ++ + + E+ L++E
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467
Query: 218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277
+ R + IF ++ S C I+ K F E+ G + + Y L+N Y A
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLF--ELMVRIGVKPNVITYNTLINGYCLAG 525
Query: 278 HLVNAESSTLVEAEKSIT-QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 334
+ E+ L+ S+ + +TY LI Y KI ++ +L + K+ +S
Sbjct: 526 KM--DEAMKLLSGMVSVGLKPNTVTYSTLINGYC------KISRMEDALVLFKEMESS 575
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,081,102
Number of Sequences: 539616
Number of extensions: 5394960
Number of successful extensions: 16932
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 14824
Number of HSP's gapped (non-prelim): 1611
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)