Query 015370
Match_columns 408
No_of_seqs 491 out of 2683
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.9E-58 6.2E-63 453.3 38.9 354 36-408 435-792 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-58 4.9E-63 454.0 38.0 363 27-408 461-850 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-52 2.6E-57 419.4 35.4 368 27-407 211-627 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.7E-52 7.9E-57 406.7 36.0 355 29-398 149-522 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-51 7.6E-56 408.9 34.5 361 31-408 114-492 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.2E-51 9.2E-56 399.2 34.2 329 66-408 100-465 (697)
7 PRK11788 tetratricopeptide rep 99.9 1.4E-23 3E-28 193.0 35.4 302 94-406 41-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-21 4.3E-26 197.8 39.6 314 70-397 584-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-20 4.7E-25 190.2 40.8 298 90-399 501-799 (899)
10 PRK11788 tetratricopeptide rep 99.9 4.6E-20 9.9E-25 169.6 33.2 296 66-371 48-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.7E-23 166.6 40.3 328 58-399 48-381 (656)
12 PRK15174 Vi polysaccharide exp 99.8 5.6E-17 1.2E-21 156.8 34.3 298 91-399 45-347 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-15 2.7E-20 147.8 40.0 321 67-399 141-571 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.4E-20 147.1 37.7 300 90-399 129-496 (615)
15 KOG4626 O-linked N-acetylgluco 99.8 2.2E-16 4.7E-21 141.2 25.9 329 60-405 123-489 (966)
16 PRK11447 cellulose synthase su 99.8 6.1E-15 1.3E-19 152.2 39.8 324 67-399 283-700 (1157)
17 PRK11447 cellulose synthase su 99.8 1.5E-14 3.3E-19 149.3 39.6 321 68-404 366-746 (1157)
18 KOG4626 O-linked N-acetylgluco 99.8 5.5E-16 1.2E-20 138.6 24.6 305 85-403 113-419 (966)
19 PRK10049 pgaA outer membrane p 99.8 3.3E-14 7E-19 140.6 39.8 328 67-405 29-426 (765)
20 PRK10049 pgaA outer membrane p 99.7 5.4E-14 1.2E-18 139.1 38.2 328 67-405 63-460 (765)
21 PRK10747 putative protoheme IX 99.7 4.3E-14 9.4E-19 129.2 33.5 284 101-399 97-390 (398)
22 KOG4422 Uncharacterized conser 99.7 3.2E-14 7E-19 122.2 28.0 240 155-400 205-463 (625)
23 KOG4422 Uncharacterized conser 99.7 9.7E-14 2.1E-18 119.3 30.8 311 84-400 203-591 (625)
24 PF13429 TPR_15: Tetratricopep 99.7 2.3E-16 5E-21 137.8 14.2 260 129-397 13-275 (280)
25 PRK14574 hmsH outer membrane p 99.7 9.9E-13 2.1E-17 128.3 40.1 328 68-405 83-483 (822)
26 PRK09782 bacteriophage N4 rece 99.7 2.4E-12 5.1E-17 128.2 40.1 319 71-405 360-710 (987)
27 TIGR00540 hemY_coli hemY prote 99.7 1.1E-12 2.4E-17 120.6 32.8 292 99-398 95-398 (409)
28 KOG1126 DNA-binding cell divis 99.6 9.6E-14 2.1E-18 125.7 24.3 286 103-404 334-625 (638)
29 PF13429 TPR_15: Tetratricopep 99.6 2.7E-15 5.9E-20 131.0 14.0 261 93-362 13-276 (280)
30 COG3071 HemY Uncharacterized e 99.6 4.3E-12 9.4E-17 108.6 32.2 291 101-405 97-396 (400)
31 PRK14574 hmsH outer membrane p 99.6 7.8E-12 1.7E-16 122.1 37.9 329 67-404 48-448 (822)
32 COG2956 Predicted N-acetylgluc 99.6 5.2E-12 1.1E-16 105.0 29.3 289 101-401 48-349 (389)
33 PRK09782 bacteriophage N4 rece 99.6 2.8E-12 6E-17 127.7 32.5 263 87-362 476-739 (987)
34 PRK10747 putative protoheme IX 99.6 6.2E-12 1.3E-16 115.1 30.0 281 67-362 98-389 (398)
35 TIGR00540 hemY_coli hemY prote 99.5 1.8E-11 3.9E-16 112.6 29.7 285 68-362 99-398 (409)
36 KOG1155 Anaphase-promoting com 99.5 2.3E-11 4.9E-16 105.9 27.5 289 95-395 234-532 (559)
37 KOG1126 DNA-binding cell divis 99.5 4.6E-12 9.9E-17 115.0 24.2 281 69-364 335-621 (638)
38 KOG1155 Anaphase-promoting com 99.5 8.6E-11 1.9E-15 102.4 30.3 300 84-398 160-494 (559)
39 KOG2076 RNA polymerase III tra 99.5 8.4E-11 1.8E-15 110.3 31.6 305 89-398 140-477 (895)
40 KOG2076 RNA polymerase III tra 99.5 2.1E-10 4.5E-15 107.8 32.7 325 66-397 152-510 (895)
41 TIGR02521 type_IV_pilW type IV 99.5 5E-11 1.1E-15 101.1 25.9 198 157-359 31-228 (234)
42 KOG4318 Bicoid mRNA stability 99.5 2.9E-12 6.2E-17 119.5 19.0 73 332-408 202-274 (1088)
43 PF13041 PPR_2: PPR repeat fam 99.5 1.5E-13 3.2E-18 85.2 6.6 49 190-238 1-49 (50)
44 PRK12370 invasion protein regu 99.5 1.5E-10 3.2E-15 110.6 29.5 266 123-400 255-536 (553)
45 COG2956 Predicted N-acetylgluc 99.5 2.7E-10 5.8E-15 95.0 26.5 253 137-398 48-310 (389)
46 PRK12370 invasion protein regu 99.5 1.8E-10 3.9E-15 110.0 29.3 267 86-364 254-536 (553)
47 PF13041 PPR_2: PPR repeat fam 99.5 2.3E-13 4.9E-18 84.4 6.3 50 155-204 1-50 (50)
48 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.5E-15 98.9 23.7 196 126-326 33-230 (234)
49 KOG2002 TPR-containing nuclear 99.4 1.4E-09 3E-14 103.2 29.8 324 72-405 399-749 (1018)
50 KOG2003 TPR repeat-containing 99.4 7.1E-10 1.5E-14 96.6 25.4 278 97-385 428-709 (840)
51 KOG2002 TPR-containing nuclear 99.4 1.1E-09 2.4E-14 103.8 27.9 322 75-402 439-801 (1018)
52 KOG1129 TPR repeat-containing 99.4 6.4E-11 1.4E-15 98.8 16.9 231 127-363 226-458 (478)
53 KOG1173 Anaphase-promoting com 99.3 3.6E-09 7.9E-14 94.7 26.9 284 85-382 241-534 (611)
54 KOG0495 HAT repeat protein [RN 99.3 2.8E-08 6.1E-13 90.6 32.6 299 88-398 550-879 (913)
55 KOG0547 Translocase of outer m 99.3 4.8E-09 1E-13 92.4 26.8 154 237-397 404-564 (606)
56 PF12569 NARP1: NMDA receptor- 99.3 6.2E-09 1.3E-13 96.6 29.0 295 93-398 9-333 (517)
57 KOG4318 Bicoid mRNA stability 99.3 6.5E-10 1.4E-14 104.2 21.8 253 74-349 11-286 (1088)
58 COG3071 HemY Uncharacterized e 99.3 3.1E-08 6.7E-13 85.4 28.9 284 68-363 99-390 (400)
59 KOG1840 Kinesin light chain [C 99.3 1E-08 2.2E-13 94.2 27.3 235 126-361 201-477 (508)
60 KOG1129 TPR repeat-containing 99.3 9E-10 2E-14 92.1 18.4 233 160-404 226-461 (478)
61 KOG0495 HAT repeat protein [RN 99.3 6.6E-08 1.4E-12 88.3 30.9 263 90-362 518-781 (913)
62 KOG1174 Anaphase-promoting com 99.3 3.9E-08 8.5E-13 85.0 28.0 299 89-398 195-499 (564)
63 KOG1915 Cell cycle control pro 99.2 2.1E-07 4.5E-12 82.0 31.5 314 69-397 157-498 (677)
64 cd05804 StaR_like StaR_like; a 99.2 1.4E-07 3.1E-12 85.6 32.6 92 162-254 119-213 (355)
65 KOG2003 TPR repeat-containing 99.2 1.3E-08 2.7E-13 89.0 23.5 272 68-349 434-709 (840)
66 COG3063 PilF Tfp pilus assembl 99.2 3.6E-08 7.8E-13 78.8 24.0 201 158-363 36-236 (250)
67 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.5E-13 88.8 24.2 150 102-254 40-192 (296)
68 KOG1173 Anaphase-promoting com 99.2 2.5E-08 5.4E-13 89.5 25.0 273 123-405 243-522 (611)
69 PF12569 NARP1: NMDA receptor- 99.2 7.5E-08 1.6E-12 89.5 28.0 291 61-362 12-333 (517)
70 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-07 4.1E-12 82.0 26.6 224 139-375 41-275 (296)
71 COG3063 PilF Tfp pilus assembl 99.1 8.9E-08 1.9E-12 76.6 21.6 190 90-284 37-228 (250)
72 cd05804 StaR_like StaR_like; a 99.1 3.2E-06 6.9E-11 76.8 34.6 308 89-399 7-336 (355)
73 KOG2047 mRNA splicing factor [ 99.0 5.8E-06 1.3E-10 75.9 32.3 334 59-404 144-583 (835)
74 KOG0547 Translocase of outer m 99.0 1E-07 2.2E-12 84.3 19.1 219 137-362 339-565 (606)
75 PF04733 Coatomer_E: Coatomer 99.0 7E-08 1.5E-12 83.6 17.6 221 128-363 39-265 (290)
76 KOG1174 Anaphase-promoting com 99.0 1.1E-06 2.4E-11 76.3 24.2 270 84-364 228-501 (564)
77 KOG1915 Cell cycle control pro 98.9 3.3E-05 7.2E-10 68.6 33.1 246 72-328 92-351 (677)
78 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.6E-14 59.4 4.0 32 187-218 2-33 (34)
79 KOG1840 Kinesin light chain [C 98.9 1.1E-06 2.4E-11 81.0 23.3 265 129-398 133-437 (508)
80 KOG3785 Uncharacterized conser 98.9 4.6E-06 1E-10 71.1 24.9 130 268-403 364-494 (557)
81 KOG4340 Uncharacterized conser 98.9 1.2E-06 2.7E-11 72.8 20.8 261 87-359 43-335 (459)
82 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.3E-12 80.8 17.0 223 88-328 35-265 (290)
83 KOG1070 rRNA processing protei 98.9 2E-06 4.3E-11 85.3 24.6 244 142-391 1443-1692(1710)
84 PF12854 PPR_1: PPR repeat 98.8 5.3E-09 1.2E-13 58.2 4.2 34 221-254 1-34 (34)
85 KOG1070 rRNA processing protei 98.8 2.9E-06 6.4E-11 84.1 25.4 231 121-356 1455-1693(1710)
86 KOG4162 Predicted calmodulin-b 98.8 6.1E-05 1.3E-09 70.8 31.7 314 77-399 312-783 (799)
87 KOG0624 dsRNA-activated protei 98.8 4.3E-05 9.4E-10 65.1 28.0 303 86-399 36-370 (504)
88 KOG1156 N-terminal acetyltrans 98.8 5.6E-05 1.2E-09 69.7 30.0 319 70-400 58-435 (700)
89 PLN02789 farnesyltranstransfer 98.8 6.9E-06 1.5E-10 72.2 23.5 179 91-275 40-229 (320)
90 PLN02789 farnesyltranstransfer 98.8 2.9E-05 6.2E-10 68.4 26.9 212 127-345 40-266 (320)
91 PRK04841 transcriptional regul 98.8 2.7E-05 5.9E-10 80.0 31.0 306 93-399 414-760 (903)
92 KOG1125 TPR repeat-containing 98.7 1.8E-06 3.9E-11 78.2 18.6 253 133-392 294-564 (579)
93 KOG1128 Uncharacterized conser 98.7 1.8E-06 3.9E-11 80.3 18.7 217 90-328 400-616 (777)
94 TIGR03302 OM_YfiO outer membra 98.7 4.9E-06 1.1E-10 70.7 20.7 190 190-399 31-232 (235)
95 KOG1128 Uncharacterized conser 98.7 2.1E-06 4.5E-11 79.8 19.0 235 126-381 400-634 (777)
96 TIGR03302 OM_YfiO outer membra 98.7 1E-05 2.3E-10 68.7 22.2 187 155-363 31-232 (235)
97 KOG2047 mRNA splicing factor [ 98.7 0.00015 3.2E-09 67.1 29.4 300 87-398 101-453 (835)
98 KOG2376 Signal recognition par 98.7 0.00012 2.7E-09 66.8 28.7 317 71-405 30-419 (652)
99 KOG0985 Vesicle coat protein c 98.7 5.8E-05 1.3E-09 73.0 26.9 253 73-358 967-1244(1666)
100 KOG2376 Signal recognition par 98.6 0.00036 7.8E-09 63.9 30.8 342 40-398 34-486 (652)
101 PRK14720 transcript cleavage f 98.6 2.5E-05 5.4E-10 76.7 24.9 219 86-345 29-268 (906)
102 KOG1156 N-terminal acetyltrans 98.6 0.00011 2.3E-09 67.9 27.2 258 97-362 16-282 (700)
103 KOG0548 Molecular co-chaperone 98.6 0.00011 2.4E-09 66.4 26.4 320 68-399 17-455 (539)
104 KOG1125 TPR repeat-containing 98.6 1E-05 2.2E-10 73.5 19.0 254 94-356 291-564 (579)
105 COG5010 TadD Flp pilus assembl 98.6 2E-05 4.4E-10 64.7 19.1 153 128-284 70-223 (257)
106 KOG1914 mRNA cleavage and poly 98.6 0.00059 1.3E-08 61.9 30.0 150 243-398 347-500 (656)
107 COG5010 TadD Flp pilus assembl 98.5 3.1E-05 6.6E-10 63.7 19.2 155 198-358 72-226 (257)
108 KOG3081 Vesicle coat complex C 98.5 7.5E-05 1.6E-09 61.5 21.1 117 165-293 116-236 (299)
109 COG4783 Putative Zn-dependent 98.5 0.00012 2.7E-09 65.4 24.1 206 140-373 253-462 (484)
110 PRK10370 formate-dependent nit 98.5 3.2E-05 7E-10 63.3 19.0 125 240-371 52-179 (198)
111 PRK15359 type III secretion sy 98.5 4.7E-06 1E-10 64.5 13.3 94 91-186 27-121 (144)
112 PRK15179 Vi polysaccharide bio 98.5 2.6E-05 5.6E-10 75.7 21.1 183 84-277 82-269 (694)
113 PRK10370 formate-dependent nit 98.5 5.7E-05 1.2E-09 61.9 20.1 119 170-293 52-173 (198)
114 KOG4340 Uncharacterized conser 98.5 0.00017 3.6E-09 60.5 22.3 230 85-324 74-335 (459)
115 PRK04841 transcriptional regul 98.5 0.00037 8E-09 71.8 30.4 270 129-399 414-720 (903)
116 KOG3617 WD40 and TPR repeat-co 98.5 7.6E-05 1.7E-09 70.7 22.4 213 86-326 755-994 (1416)
117 PRK14720 transcript cleavage f 98.5 6.7E-05 1.5E-09 73.8 23.0 230 124-396 31-280 (906)
118 COG4783 Putative Zn-dependent 98.5 0.00031 6.7E-09 63.0 24.9 190 122-337 272-462 (484)
119 TIGR00756 PPR pentatricopeptid 98.5 3.3E-07 7.1E-12 51.7 4.4 34 372-405 2-35 (35)
120 PRK15359 type III secretion sy 98.4 1.5E-05 3.2E-10 61.7 14.4 94 127-221 27-121 (144)
121 PRK15179 Vi polysaccharide bio 98.4 8.5E-05 1.8E-09 72.2 22.5 216 157-398 28-244 (694)
122 KOG0985 Vesicle coat protein c 98.4 0.00067 1.4E-08 66.0 26.9 84 157-248 1104-1187(1666)
123 TIGR00756 PPR pentatricopeptid 98.4 5.8E-07 1.3E-11 50.7 4.4 33 194-226 2-34 (35)
124 PF13812 PPR_3: Pentatricopept 98.4 6.5E-07 1.4E-11 50.1 4.0 33 371-403 2-34 (34)
125 PF13812 PPR_3: Pentatricopept 98.4 8E-07 1.7E-11 49.7 4.3 32 194-225 3-34 (34)
126 TIGR02552 LcrH_SycD type III s 98.3 1.6E-05 3.4E-10 61.0 12.5 88 132-220 25-113 (135)
127 KOG4162 Predicted calmodulin-b 98.3 0.00086 1.9E-08 63.4 24.8 129 230-363 653-783 (799)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.4E-05 9.4E-10 68.7 15.2 123 128-255 173-296 (395)
129 PF08579 RPM2: Mitochondrial r 98.2 2.4E-05 5.3E-10 55.5 10.2 81 159-239 27-116 (120)
130 TIGR02552 LcrH_SycD type III s 98.2 3.9E-05 8.5E-10 58.8 12.5 99 262-363 16-114 (135)
131 KOG3785 Uncharacterized conser 98.2 0.0008 1.7E-08 57.9 20.0 63 339-404 290-357 (557)
132 PF10037 MRP-S27: Mitochondria 98.2 3.8E-05 8.1E-10 69.4 12.5 121 120-240 62-186 (429)
133 KOG3616 Selective LIM binding 98.2 0.0005 1.1E-08 64.6 19.8 136 200-359 740-875 (1636)
134 KOG2053 Mitochondrial inherita 98.2 0.0018 3.9E-08 62.3 23.7 107 136-245 21-128 (932)
135 KOG3081 Vesicle coat complex C 98.1 0.003 6.6E-08 52.4 25.3 250 95-363 15-271 (299)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3E-09 65.5 15.7 126 156-289 168-293 (395)
137 KOG2053 Mitochondrial inherita 98.1 0.0094 2E-07 57.7 31.0 224 99-330 20-257 (932)
138 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.4E-09 56.2 13.8 22 165-186 56-77 (145)
139 KOG3060 Uncharacterized conser 98.1 0.0034 7.3E-08 51.7 21.2 167 84-255 47-219 (289)
140 PF01535 PPR: PPR repeat; Int 98.1 5E-06 1.1E-10 45.3 3.5 28 159-186 2-29 (31)
141 KOG3617 WD40 and TPR repeat-co 98.1 0.00072 1.6E-08 64.4 19.4 135 98-252 738-883 (1416)
142 PF01535 PPR: PPR repeat; Int 98.1 5.2E-06 1.1E-10 45.2 3.4 30 372-401 2-31 (31)
143 PF10037 MRP-S27: Mitochondria 98.1 5.8E-05 1.3E-09 68.3 11.9 121 155-276 64-186 (429)
144 PF06239 ECSIT: Evolutionarily 98.1 7.3E-05 1.6E-09 60.0 11.0 97 145-241 35-152 (228)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.5E-09 55.1 14.1 125 89-218 13-144 (145)
146 KOG3060 Uncharacterized conser 98.1 0.0045 9.8E-08 51.0 23.1 84 240-327 99-182 (289)
147 KOG3616 Selective LIM binding 98.0 0.011 2.3E-07 56.1 24.9 137 94-251 738-874 (1636)
148 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00017 3.7E-09 53.7 11.5 97 90-186 4-105 (119)
149 KOG1914 mRNA cleavage and poly 98.0 0.013 2.9E-07 53.6 27.8 314 84-405 16-470 (656)
150 KOG0624 dsRNA-activated protei 98.0 0.009 2E-07 51.5 28.4 309 83-406 67-427 (504)
151 PF08579 RPM2: Mitochondrial r 97.9 0.00021 4.7E-09 50.8 10.3 82 194-276 27-117 (120)
152 KOG0548 Molecular co-chaperone 97.9 0.013 2.9E-07 53.4 23.5 294 95-398 9-420 (539)
153 cd00189 TPR Tetratricopeptide 97.9 0.00031 6.7E-09 49.5 11.1 94 160-255 3-96 (100)
154 PF05843 Suf: Suppressor of fo 97.9 0.00027 5.8E-09 61.5 12.4 130 89-221 2-136 (280)
155 cd00189 TPR Tetratricopeptide 97.9 0.00033 7.2E-09 49.3 11.1 94 302-398 3-96 (100)
156 PF12895 Apc3: Anaphase-promot 97.9 5.5E-05 1.2E-09 52.5 6.5 81 312-395 2-83 (84)
157 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00082 1.8E-08 50.0 13.0 95 304-398 7-104 (119)
158 PF12895 Apc3: Anaphase-promot 97.8 4.6E-05 9.9E-10 52.9 5.1 82 101-182 2-83 (84)
159 PF05843 Suf: Suppressor of fo 97.8 0.001 2.2E-08 57.9 13.8 128 126-255 3-135 (280)
160 KOG1127 TPR repeat-containing 97.7 0.0023 4.9E-08 62.5 16.7 184 206-398 472-658 (1238)
161 KOG1130 Predicted G-alpha GTPa 97.7 0.0011 2.4E-08 58.3 12.4 286 96-399 25-344 (639)
162 PRK15363 pathogenicity island 97.7 0.0036 7.9E-08 48.1 13.8 95 160-256 38-132 (157)
163 KOG0553 TPR repeat-containing 97.6 0.00034 7.3E-09 58.9 8.6 86 273-362 91-177 (304)
164 PLN03088 SGT1, suppressor of 97.6 0.0011 2.3E-08 59.9 12.6 90 95-186 9-99 (356)
165 PRK02603 photosystem I assembl 97.6 0.0042 9.1E-08 49.8 14.7 85 157-242 35-121 (172)
166 KOG1127 TPR repeat-containing 97.6 0.0082 1.8E-07 58.8 18.2 182 104-291 474-657 (1238)
167 PRK10153 DNA-binding transcrip 97.6 0.0037 8.1E-08 59.1 16.1 62 228-293 421-482 (517)
168 PLN03088 SGT1, suppressor of 97.6 0.0014 3E-08 59.2 12.5 104 131-237 9-113 (356)
169 CHL00033 ycf3 photosystem I as 97.6 0.0043 9.4E-08 49.5 14.0 63 193-255 36-100 (168)
170 PRK02603 photosystem I assembl 97.6 0.0045 9.7E-08 49.6 14.1 87 125-212 36-126 (172)
171 PF14559 TPR_19: Tetratricopep 97.6 0.00042 9.1E-09 45.7 6.8 64 99-164 2-65 (68)
172 PF14938 SNAP: Soluble NSF att 97.5 0.017 3.6E-07 50.5 18.5 24 160-183 38-61 (282)
173 PF14938 SNAP: Soluble NSF att 97.5 0.023 5E-07 49.6 18.9 167 195-363 38-225 (282)
174 PRK10153 DNA-binding transcrip 97.5 0.012 2.6E-07 55.8 18.1 138 222-364 332-483 (517)
175 PRK15363 pathogenicity island 97.5 0.0043 9.4E-08 47.7 12.0 96 265-363 37-132 (157)
176 PF13432 TPR_16: Tetratricopep 97.5 0.0005 1.1E-08 44.9 6.2 56 341-398 4-59 (65)
177 KOG2796 Uncharacterized conser 97.4 0.023 4.9E-07 47.3 16.4 134 160-296 180-318 (366)
178 CHL00033 ycf3 photosystem I as 97.4 0.0046 1E-07 49.3 12.7 64 228-292 36-100 (168)
179 PF06239 ECSIT: Evolutionarily 97.4 0.0023 5E-08 51.7 10.6 100 177-279 34-154 (228)
180 PF04840 Vps16_C: Vps16, C-ter 97.4 0.075 1.6E-06 47.0 21.8 105 266-392 180-284 (319)
181 KOG2280 Vacuolar assembly/sort 97.3 0.16 3.5E-06 48.7 23.8 287 81-393 425-793 (829)
182 KOG1538 Uncharacterized conser 97.3 0.0041 8.8E-08 57.9 12.1 218 165-401 606-848 (1081)
183 PF12688 TPR_5: Tetratrico pep 97.3 0.025 5.4E-07 41.9 14.2 85 200-284 9-96 (120)
184 PF13414 TPR_11: TPR repeat; P 97.3 0.0012 2.6E-08 43.6 6.8 63 334-398 3-66 (69)
185 PF13432 TPR_16: Tetratricopep 97.3 0.0015 3.3E-08 42.6 6.8 56 164-220 4-59 (65)
186 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.3E-08 43.7 6.1 52 169-221 3-54 (68)
187 PF04840 Vps16_C: Vps16, C-ter 97.3 0.12 2.6E-06 45.7 26.5 110 228-359 178-287 (319)
188 PF13414 TPR_11: TPR repeat; P 97.2 0.0019 4.1E-08 42.7 6.9 63 157-220 3-66 (69)
189 PF12688 TPR_5: Tetratrico pep 97.2 0.041 8.9E-07 40.7 14.2 108 162-274 6-117 (120)
190 PRK10866 outer membrane biogen 97.2 0.12 2.5E-06 44.0 20.8 60 162-222 37-99 (243)
191 PRK10866 outer membrane biogen 97.2 0.12 2.6E-06 43.9 20.4 186 191-398 31-240 (243)
192 PF12921 ATP13: Mitochondrial 97.1 0.0091 2E-07 44.6 10.2 58 221-278 46-103 (126)
193 COG4700 Uncharacterized protei 97.1 0.1 2.2E-06 41.2 17.1 131 155-291 87-220 (251)
194 PF03704 BTAD: Bacterial trans 97.0 0.0024 5.2E-08 49.6 6.9 56 339-396 67-122 (146)
195 KOG0553 TPR repeat-containing 97.0 0.014 2.9E-07 49.6 11.4 85 99-185 92-177 (304)
196 PRK10803 tol-pal system protei 97.0 0.027 6E-07 48.2 13.3 87 310-398 154-245 (263)
197 PF13371 TPR_9: Tetratricopept 96.9 0.0033 7.3E-08 42.0 6.1 57 307-364 3-59 (73)
198 PF13525 YfiO: Outer membrane 96.9 0.07 1.5E-06 44.0 15.0 185 88-283 5-198 (203)
199 COG3898 Uncharacterized membra 96.9 0.28 6.1E-06 43.5 25.4 293 91-399 85-392 (531)
200 PF03704 BTAD: Bacterial trans 96.9 0.0078 1.7E-07 46.7 8.4 72 158-230 63-139 (146)
201 KOG2796 Uncharacterized conser 96.9 0.031 6.8E-07 46.5 11.8 145 228-378 178-327 (366)
202 COG4235 Cytochrome c biogenesi 96.9 0.051 1.1E-06 46.3 13.5 105 150-256 149-256 (287)
203 PF12921 ATP13: Mitochondrial 96.9 0.018 4E-07 43.0 9.8 56 328-383 46-101 (126)
204 PRK10803 tol-pal system protei 96.8 0.018 4E-07 49.3 10.7 98 157-256 143-246 (263)
205 PF13424 TPR_12: Tetratricopep 96.7 0.0054 1.2E-07 41.7 5.7 62 336-397 7-73 (78)
206 KOG3941 Intermediate in Toll s 96.7 0.018 3.8E-07 48.4 9.4 111 143-253 53-185 (406)
207 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.6E-07 39.3 7.3 55 342-398 3-57 (73)
208 COG4235 Cytochrome c biogenesi 96.7 0.073 1.6E-06 45.4 13.3 127 173-306 138-267 (287)
209 PF09205 DUF1955: Domain of un 96.7 0.16 3.6E-06 37.6 13.3 66 334-401 86-151 (161)
210 COG4700 Uncharacterized protei 96.6 0.27 5.8E-06 38.9 17.5 103 190-293 87-189 (251)
211 PF13525 YfiO: Outer membrane 96.6 0.34 7.3E-06 40.0 19.2 55 166-220 14-70 (203)
212 PF13424 TPR_12: Tetratricopep 96.6 0.011 2.3E-07 40.1 6.4 62 158-219 6-73 (78)
213 KOG2041 WD40 repeat protein [G 96.5 0.47 1E-05 45.4 18.3 85 298-396 851-936 (1189)
214 KOG2114 Vacuolar assembly/sort 96.4 0.19 4.2E-06 48.8 15.6 181 124-325 334-516 (933)
215 KOG0550 Molecular chaperone (D 96.4 0.65 1.4E-05 41.6 18.6 258 94-364 55-351 (486)
216 PF13281 DUF4071: Domain of un 96.4 0.66 1.4E-05 41.7 18.2 168 192-363 141-334 (374)
217 COG3118 Thioredoxin domain-con 96.4 0.54 1.2E-05 40.2 18.1 164 73-241 119-286 (304)
218 PF13170 DUF4003: Protein of u 96.4 0.2 4.3E-06 43.8 14.4 151 104-258 78-252 (297)
219 PF10300 DUF3808: Protein of u 96.4 0.17 3.7E-06 47.6 15.0 176 107-292 176-375 (468)
220 PF10300 DUF3808: Protein of u 96.3 0.21 4.5E-06 47.1 15.4 164 230-398 191-375 (468)
221 COG3118 Thioredoxin domain-con 96.3 0.55 1.2E-05 40.2 15.8 149 165-317 142-290 (304)
222 PF04053 Coatomer_WDAD: Coatom 96.3 0.16 3.5E-06 47.1 14.0 26 192-217 347-372 (443)
223 PF13281 DUF4071: Domain of un 96.2 0.85 1.8E-05 41.0 17.8 79 125-203 142-228 (374)
224 KOG1538 Uncharacterized conser 96.2 1.2 2.5E-05 42.5 19.4 178 91-284 601-794 (1081)
225 KOG0550 Molecular chaperone (D 96.2 0.89 1.9E-05 40.8 17.2 155 96-256 177-350 (486)
226 PF08631 SPO22: Meiosis protei 96.1 0.84 1.8E-05 39.8 25.8 224 168-397 4-273 (278)
227 PRK15331 chaperone protein Sic 96.0 0.17 3.7E-06 39.3 10.6 92 268-362 42-133 (165)
228 smart00299 CLH Clathrin heavy 95.9 0.55 1.2E-05 36.0 14.9 43 162-205 12-54 (140)
229 KOG1130 Predicted G-alpha GTPa 95.9 0.05 1.1E-06 48.3 8.3 98 299-396 195-301 (639)
230 PRK15331 chaperone protein Sic 95.9 0.47 1E-05 37.0 12.7 78 204-284 49-126 (165)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.19 4.2E-06 45.8 12.2 63 156-220 74-140 (453)
232 COG1729 Uncharacterized protei 95.8 0.17 3.8E-06 42.6 11.0 96 302-398 145-243 (262)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.093 2E-06 47.7 9.9 66 84-152 71-140 (453)
234 PF04053 Coatomer_WDAD: Coatom 95.8 0.51 1.1E-05 43.9 14.9 136 88-255 295-430 (443)
235 COG3898 Uncharacterized membra 95.7 1.4 3E-05 39.4 29.4 265 85-363 115-392 (531)
236 KOG0543 FKBP-type peptidyl-pro 95.6 0.48 1E-05 42.3 13.3 97 300-399 258-355 (397)
237 KOG1941 Acetylcholine receptor 95.6 1.4 3E-05 38.9 15.6 21 301-321 164-184 (518)
238 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2.2 4.7E-05 38.9 27.2 129 264-398 398-530 (660)
239 PF09205 DUF1955: Domain of un 95.1 0.96 2.1E-05 33.7 14.8 137 204-364 14-150 (161)
240 PF13170 DUF4003: Protein of u 95.1 0.78 1.7E-05 40.2 13.1 26 315-340 198-223 (297)
241 PF10602 RPN7: 26S proteasome 95.1 0.8 1.7E-05 36.7 12.2 99 157-255 36-141 (177)
242 COG1729 Uncharacterized protei 95.1 0.47 1E-05 40.1 11.0 97 159-256 144-244 (262)
243 PF08631 SPO22: Meiosis protei 95.0 2.2 4.7E-05 37.2 24.9 18 343-360 255-272 (278)
244 smart00299 CLH Clathrin heavy 95.0 1.2 2.6E-05 34.1 16.3 126 231-382 11-137 (140)
245 PRK11906 transcriptional regul 94.7 3.1 6.8E-05 38.3 16.0 160 231-395 257-432 (458)
246 COG3629 DnrI DNA-binding trans 94.7 0.53 1.1E-05 40.4 10.6 78 158-236 154-236 (280)
247 KOG1585 Protein required for f 94.7 2.2 4.7E-05 35.6 13.4 86 89-183 32-117 (308)
248 KOG2610 Uncharacterized conser 94.6 1.4 3E-05 38.5 12.8 151 99-252 114-272 (491)
249 KOG0543 FKBP-type peptidyl-pro 94.6 1.2 2.6E-05 39.9 12.9 126 165-294 216-356 (397)
250 PF07035 Mic1: Colon cancer-as 94.6 1.8 3.8E-05 34.1 15.0 33 74-106 15-47 (167)
251 KOG1941 Acetylcholine receptor 94.5 2.5 5.5E-05 37.4 14.2 127 233-360 128-272 (518)
252 PF07035 Mic1: Colon cancer-as 94.5 1.9 4E-05 34.0 15.6 96 178-284 15-110 (167)
253 KOG3941 Intermediate in Toll s 94.5 0.41 8.9E-06 40.6 9.2 90 190-280 65-175 (406)
254 COG5107 RNA14 Pre-mRNA 3'-end 94.4 3.9 8.5E-05 37.4 20.0 133 192-328 397-531 (660)
255 PF13428 TPR_14: Tetratricopep 94.2 0.21 4.5E-06 29.3 5.3 28 159-186 3-30 (44)
256 PF13428 TPR_14: Tetratricopep 94.2 0.25 5.4E-06 29.0 5.6 39 336-376 3-41 (44)
257 KOG2041 WD40 repeat protein [G 94.2 5.8 0.00013 38.4 24.9 48 339-386 1026-1073(1189)
258 PF13512 TPR_18: Tetratricopep 94.2 1.9 4.1E-05 32.8 11.8 72 238-310 21-93 (142)
259 PRK11906 transcriptional regul 94.1 4.7 0.0001 37.2 16.8 156 125-284 252-428 (458)
260 KOG4555 TPR repeat-containing 94.0 1.4 3.1E-05 32.7 10.0 89 165-255 51-143 (175)
261 COG4649 Uncharacterized protei 93.9 2.5 5.4E-05 33.3 13.7 52 204-255 144-195 (221)
262 COG4105 ComL DNA uptake lipopr 93.6 3.9 8.4E-05 34.5 18.2 61 93-153 39-100 (254)
263 KOG2280 Vacuolar assembly/sort 93.6 7.8 0.00017 37.9 19.0 114 225-359 682-795 (829)
264 PF10602 RPN7: 26S proteasome 93.5 1.4 3.1E-05 35.3 10.5 63 193-255 37-101 (177)
265 PF02259 FAT: FAT domain; Int 93.5 5.6 0.00012 35.9 21.1 66 261-327 144-212 (352)
266 PF04184 ST7: ST7 protein; In 93.3 7 0.00015 36.4 16.5 57 268-325 264-321 (539)
267 COG0457 NrfG FOG: TPR repeat [ 93.3 4 8.6E-05 33.6 27.8 202 157-363 59-265 (291)
268 PF13512 TPR_18: Tetratricopep 93.3 2.9 6.2E-05 31.9 12.7 53 275-328 22-76 (142)
269 COG3629 DnrI DNA-binding trans 93.2 0.72 1.6E-05 39.6 8.7 62 300-362 154-215 (280)
270 COG0457 NrfG FOG: TPR repeat [ 93.2 4.1 8.8E-05 33.5 27.8 223 101-328 36-265 (291)
271 PF13176 TPR_7: Tetratricopept 93.1 0.23 4.9E-06 27.6 3.9 23 160-182 2-24 (36)
272 PF13176 TPR_7: Tetratricopept 93.1 0.23 5.1E-06 27.6 3.9 27 372-398 1-27 (36)
273 COG4649 Uncharacterized protei 92.9 3.8 8.3E-05 32.3 14.1 135 156-293 58-196 (221)
274 KOG0276 Vesicle coat complex C 92.7 2.6 5.5E-05 39.9 11.8 149 136-324 598-746 (794)
275 KOG2114 Vacuolar assembly/sort 92.7 12 0.00025 37.3 19.8 54 339-397 710-763 (933)
276 PF00515 TPR_1: Tetratricopept 92.6 0.32 6.9E-06 26.5 4.0 27 372-398 3-29 (34)
277 PF09613 HrpB1_HrpK: Bacterial 92.5 4.1 8.9E-05 31.7 12.1 21 135-155 55-75 (160)
278 KOG1920 IkappaB kinase complex 92.3 16 0.00034 37.9 20.4 80 305-396 971-1052(1265)
279 PF04184 ST7: ST7 protein; In 92.2 9.9 0.00021 35.4 18.1 82 303-384 263-345 (539)
280 PF00637 Clathrin: Region in C 92.0 0.0082 1.8E-07 46.4 -4.1 82 164-252 14-95 (143)
281 PF09613 HrpB1_HrpK: Bacterial 91.9 4.9 0.00011 31.3 11.2 56 270-328 17-73 (160)
282 KOG2610 Uncharacterized conser 91.9 8.4 0.00018 33.9 17.2 48 171-219 117-164 (491)
283 KOG4555 TPR repeat-containing 91.8 3.5 7.6E-05 30.8 9.4 89 97-187 52-145 (175)
284 KOG1464 COP9 signalosome, subu 91.7 7.5 0.00016 33.0 16.7 25 301-325 193-217 (440)
285 PF07719 TPR_2: Tetratricopept 91.0 0.63 1.4E-05 25.1 4.1 27 372-398 3-29 (34)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 90.8 2.4 5.3E-05 29.6 7.3 47 173-219 23-69 (103)
287 PF02284 COX5A: Cytochrome c o 90.3 3.2 6.8E-05 29.4 7.6 63 314-378 25-87 (108)
288 PF13431 TPR_17: Tetratricopep 90.3 0.39 8.5E-06 26.3 2.7 21 191-211 12-32 (34)
289 PF02284 COX5A: Cytochrome c o 90.2 2.2 4.7E-05 30.2 6.8 45 211-255 29-73 (108)
290 TIGR02561 HrpB1_HrpK type III 90.0 7.3 0.00016 29.9 11.7 55 100-156 22-76 (153)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 3.8 8.2E-05 28.7 7.5 63 314-378 22-84 (103)
292 COG1747 Uncharacterized N-term 89.5 18 0.0004 33.9 20.0 164 155-328 64-234 (711)
293 COG4785 NlpI Lipoprotein NlpI, 89.4 11 0.00023 31.1 15.6 62 157-221 99-162 (297)
294 PF13431 TPR_17: Tetratricopep 89.4 0.59 1.3E-05 25.6 3.0 32 357-390 2-33 (34)
295 KOG4570 Uncharacterized conser 89.4 11 0.00024 32.9 11.7 101 120-222 60-165 (418)
296 COG2909 MalT ATP-dependent tra 89.1 27 0.00058 35.2 29.0 200 202-403 425-651 (894)
297 PF00515 TPR_1: Tetratricopept 89.0 1.1 2.5E-05 24.1 4.1 24 195-218 4-27 (34)
298 PF13374 TPR_10: Tetratricopep 88.7 1.2 2.5E-05 25.4 4.2 25 194-218 4-28 (42)
299 PF13374 TPR_10: Tetratricopep 88.7 1.3 2.8E-05 25.2 4.4 27 228-254 3-29 (42)
300 PF07079 DUF1347: Protein of u 88.6 20 0.00044 33.1 25.5 276 98-398 16-326 (549)
301 PF11207 DUF2989: Protein of u 88.0 7.1 0.00015 31.7 9.3 79 203-283 118-198 (203)
302 TIGR02508 type_III_yscG type I 87.7 7.9 0.00017 27.4 9.2 86 103-195 20-105 (115)
303 COG4105 ComL DNA uptake lipopr 87.5 17 0.00036 30.9 20.1 183 157-362 35-232 (254)
304 KOG1585 Protein required for f 87.2 17 0.00037 30.6 16.0 91 266-358 153-251 (308)
305 PF07079 DUF1347: Protein of u 87.2 25 0.00054 32.5 27.8 80 314-396 436-521 (549)
306 PF09477 Type_III_YscG: Bacter 87.0 9.2 0.0002 27.4 8.7 80 102-187 20-99 (116)
307 PF13181 TPR_8: Tetratricopept 86.8 1.2 2.6E-05 24.0 3.3 27 372-398 3-29 (34)
308 KOG4570 Uncharacterized conser 86.7 7.7 0.00017 33.8 9.2 127 163-292 25-164 (418)
309 TIGR02561 HrpB1_HrpK type III 86.2 13 0.00029 28.5 10.5 52 275-329 22-74 (153)
310 PF02259 FAT: FAT domain; Int 85.8 26 0.00057 31.5 21.1 66 225-292 144-212 (352)
311 PF07719 TPR_2: Tetratricopept 85.8 2.3 4.9E-05 22.8 4.1 21 198-218 7-27 (34)
312 PF00637 Clathrin: Region in C 85.6 0.38 8.3E-06 37.0 1.1 128 233-385 13-140 (143)
313 COG4455 ImpE Protein of avirul 85.4 6 0.00013 32.5 7.5 75 90-166 3-81 (273)
314 COG4455 ImpE Protein of avirul 85.2 9 0.0002 31.5 8.5 76 160-236 4-81 (273)
315 COG1747 Uncharacterized N-term 85.0 35 0.00075 32.2 21.5 181 189-380 63-249 (711)
316 COG2976 Uncharacterized protei 83.7 22 0.00047 28.8 12.9 88 164-256 96-188 (207)
317 PF13929 mRNA_stabil: mRNA sta 83.4 29 0.00063 30.1 17.1 138 136-273 140-288 (292)
318 PRK15180 Vi polysaccharide bio 82.9 27 0.00058 32.6 11.3 123 94-219 295-418 (831)
319 PF14669 Asp_Glu_race_2: Putat 82.3 24 0.00053 28.4 16.2 193 186-407 2-215 (233)
320 PRK09687 putative lyase; Provi 82.1 34 0.00073 29.9 26.1 136 226-380 141-277 (280)
321 TIGR03504 FimV_Cterm FimV C-te 81.9 2.8 6.2E-05 24.5 3.4 24 376-399 5-28 (44)
322 KOG1920 IkappaB kinase complex 81.7 73 0.0016 33.5 19.9 137 195-359 911-1051(1265)
323 PF13181 TPR_8: Tetratricopept 81.2 4.8 0.0001 21.5 4.1 27 159-185 3-29 (34)
324 KOG4648 Uncharacterized conser 81.0 7 0.00015 34.5 6.8 52 271-324 105-156 (536)
325 KOG2066 Vacuolar assembly/sort 80.7 64 0.0014 32.2 14.6 23 266-289 508-530 (846)
326 PF13174 TPR_6: Tetratricopept 80.6 4 8.6E-05 21.5 3.7 27 91-117 3-29 (33)
327 KOG3364 Membrane protein invol 80.5 23 0.00049 26.8 8.6 65 298-363 31-100 (149)
328 KOG4234 TPR repeat-containing 80.0 27 0.00058 28.5 9.2 91 271-363 103-197 (271)
329 PF14689 SPOB_a: Sensor_kinase 80.0 6.3 0.00014 25.2 4.8 30 333-362 22-51 (62)
330 TIGR03504 FimV_Cterm FimV C-te 79.4 5.9 0.00013 23.2 4.1 21 164-184 6-26 (44)
331 KOG4507 Uncharacterized conser 79.3 21 0.00046 34.1 9.7 148 225-378 569-718 (886)
332 PF07163 Pex26: Pex26 protein; 79.1 35 0.00076 29.4 10.1 83 131-215 90-181 (309)
333 cd08819 CARD_MDA5_2 Caspase ac 79.1 17 0.00037 25.0 6.8 64 72-142 21-84 (88)
334 KOG1258 mRNA processing protei 79.0 63 0.0014 31.1 29.4 37 346-384 453-489 (577)
335 PF07721 TPR_4: Tetratricopept 78.9 3.8 8.3E-05 20.6 3.0 11 167-177 11-21 (26)
336 PF13174 TPR_6: Tetratricopept 78.9 3.5 7.7E-05 21.7 3.1 24 340-363 6-29 (33)
337 PF06552 TOM20_plant: Plant sp 78.8 23 0.00049 28.3 8.4 28 243-273 96-123 (186)
338 PF10579 Rapsyn_N: Rapsyn N-te 78.7 6.6 0.00014 26.4 4.7 46 346-391 18-64 (80)
339 PF07163 Pex26: Pex26 protein; 78.1 35 0.00077 29.4 9.8 90 267-357 87-181 (309)
340 PHA02875 ankyrin repeat protei 77.8 36 0.00078 31.6 11.3 203 131-358 6-223 (413)
341 KOG1550 Extracellular protein 77.4 74 0.0016 31.0 20.7 277 104-399 228-538 (552)
342 KOG0276 Vesicle coat complex C 77.4 34 0.00074 32.9 10.4 149 169-359 598-746 (794)
343 COG5187 RPN7 26S proteasome re 76.3 51 0.0011 28.6 13.8 133 225-362 79-220 (412)
344 KOG4077 Cytochrome c oxidase, 76.1 24 0.00053 26.2 7.3 45 176-220 68-112 (149)
345 KOG3807 Predicted membrane pro 75.8 24 0.00052 31.1 8.5 122 173-306 232-354 (556)
346 KOG2063 Vacuolar assembly/sort 75.5 78 0.0017 32.5 13.0 117 193-311 505-638 (877)
347 PF10579 Rapsyn_N: Rapsyn N-te 75.5 11 0.00023 25.4 5.0 48 311-358 18-67 (80)
348 PF04097 Nic96: Nup93/Nic96; 75.4 89 0.0019 30.9 16.7 49 87-137 110-158 (613)
349 COG3947 Response regulator con 75.1 24 0.00051 30.6 8.1 52 165-217 287-338 (361)
350 KOG4077 Cytochrome c oxidase, 74.7 24 0.00053 26.2 7.0 48 210-257 67-114 (149)
351 PRK11619 lytic murein transgly 74.6 96 0.0021 30.9 26.6 251 129-397 104-373 (644)
352 PRK09687 putative lyase; Provi 74.5 58 0.0013 28.4 28.3 235 84-344 33-277 (280)
353 PF11846 DUF3366: Domain of un 74.1 17 0.00038 29.5 7.3 32 331-362 141-172 (193)
354 PF14853 Fis1_TPR_C: Fis1 C-te 74.1 5 0.00011 24.7 3.0 23 376-398 7-29 (53)
355 smart00028 TPR Tetratricopepti 73.8 7.3 0.00016 19.6 3.6 26 373-398 4-29 (34)
356 PF14689 SPOB_a: Sensor_kinase 73.7 11 0.00023 24.1 4.6 47 349-398 5-51 (62)
357 KOG0890 Protein kinase of the 73.4 1.8E+02 0.0039 33.5 22.1 152 94-251 1389-1542(2382)
358 COG5159 RPN6 26S proteasome re 73.3 61 0.0013 28.1 15.2 51 164-214 10-67 (421)
359 COG2976 Uncharacterized protei 73.0 49 0.0011 26.9 12.9 22 378-399 167-188 (207)
360 PF10345 Cohesin_load: Cohesin 72.3 1.1E+02 0.0023 30.4 21.6 195 191-397 29-252 (608)
361 PRK15180 Vi polysaccharide bio 72.0 88 0.0019 29.4 13.7 121 203-329 300-421 (831)
362 PF08424 NRDE-2: NRDE-2, neces 71.7 75 0.0016 28.4 17.1 23 379-401 163-185 (321)
363 KOG0687 26S proteasome regulat 70.7 76 0.0017 28.1 14.6 135 223-362 66-209 (393)
364 PF10345 Cohesin_load: Cohesin 70.5 1.2E+02 0.0025 30.1 26.9 190 85-284 27-246 (608)
365 KOG4234 TPR repeat-containing 67.6 41 0.00089 27.5 7.5 61 159-220 136-196 (271)
366 PF04097 Nic96: Nup93/Nic96; 65.8 1.5E+02 0.0032 29.5 14.6 65 157-223 112-183 (613)
367 PF13934 ELYS: Nuclear pore co 65.5 82 0.0018 26.5 12.5 104 126-238 78-183 (226)
368 PF11846 DUF3366: Domain of un 65.3 20 0.00043 29.2 5.8 33 154-186 141-173 (193)
369 COG3947 Response regulator con 65.2 95 0.0021 27.1 15.3 61 301-362 281-341 (361)
370 PF11663 Toxin_YhaV: Toxin wit 65.2 7.4 0.00016 29.2 2.8 32 169-202 107-138 (140)
371 cd08819 CARD_MDA5_2 Caspase ac 65.1 43 0.00093 23.1 6.8 67 106-177 20-86 (88)
372 PF10366 Vps39_1: Vacuolar sor 65.0 51 0.0011 23.9 8.1 25 302-326 42-66 (108)
373 PF11848 DUF3368: Domain of un 64.6 27 0.0006 20.8 4.8 31 204-234 14-44 (48)
374 PF12862 Apc5: Anaphase-promot 64.1 35 0.00076 23.8 6.1 68 310-377 9-84 (94)
375 KOG4648 Uncharacterized conser 64.0 49 0.0011 29.4 7.9 50 94-145 103-152 (536)
376 PF06552 TOM20_plant: Plant sp 64.0 75 0.0016 25.5 10.8 43 350-401 96-138 (186)
377 smart00638 LPD_N Lipoprotein N 64.0 1.5E+02 0.0033 29.0 23.0 63 123-188 309-371 (574)
378 PF13762 MNE1: Mitochondrial s 63.8 65 0.0014 24.8 10.6 93 183-276 28-128 (145)
379 PF11848 DUF3368: Domain of un 63.5 30 0.00064 20.7 5.2 31 169-199 14-44 (48)
380 PHA02875 ankyrin repeat protei 63.2 1.3E+02 0.0028 27.9 15.2 72 73-149 15-90 (413)
381 PF11207 DUF2989: Protein of u 62.8 85 0.0018 25.7 14.7 80 310-390 117-198 (203)
382 cd00280 TRFH Telomeric Repeat 62.5 77 0.0017 25.5 8.0 21 235-255 119-139 (200)
383 TIGR02508 type_III_yscG type I 62.4 54 0.0012 23.4 8.3 51 272-329 48-98 (115)
384 KOG2063 Vacuolar assembly/sort 62.4 2E+02 0.0042 29.8 15.5 117 159-276 506-639 (877)
385 PF09477 Type_III_YscG: Bacter 62.1 57 0.0012 23.5 8.6 77 243-328 22-98 (116)
386 KOG3636 Uncharacterized conser 61.0 1.3E+02 0.0029 27.8 10.2 148 51-204 112-272 (669)
387 COG5187 RPN7 26S proteasome re 61.0 1.1E+02 0.0025 26.6 14.0 116 156-274 114-238 (412)
388 KOG0686 COP9 signalosome, subu 60.6 1.4E+02 0.003 27.5 13.3 60 126-185 152-215 (466)
389 PF11817 Foie-gras_1: Foie gra 60.6 52 0.0011 28.1 7.7 59 339-397 183-245 (247)
390 PRK10564 maltose regulon perip 59.3 23 0.00049 30.9 5.1 29 196-224 261-289 (303)
391 KOG1258 mRNA processing protei 59.0 1.8E+02 0.0039 28.2 18.8 181 87-277 296-489 (577)
392 COG5108 RPO41 Mitochondrial DN 58.7 69 0.0015 31.4 8.4 92 93-185 33-131 (1117)
393 KOG1550 Extracellular protein 58.5 1.9E+02 0.0041 28.3 19.6 77 173-255 228-321 (552)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 77 0.0017 23.7 10.0 44 352-395 81-124 (126)
395 COG0735 Fur Fe2+/Zn2+ uptake r 57.6 65 0.0014 24.8 7.0 29 198-226 26-54 (145)
396 COG0735 Fur Fe2+/Zn2+ uptake r 56.8 64 0.0014 24.8 6.9 66 73-140 6-71 (145)
397 PF11838 ERAP1_C: ERAP1-like C 56.4 1.4E+02 0.0031 26.4 14.3 63 156-221 168-230 (324)
398 KOG4279 Serine/threonine prote 56.0 2.3E+02 0.005 28.5 13.1 191 142-364 181-396 (1226)
399 PF11817 Foie-gras_1: Foie gra 55.6 78 0.0017 27.0 7.9 60 194-253 180-244 (247)
400 KOG0991 Replication factor C, 55.5 1.3E+02 0.0028 25.5 10.8 140 232-384 135-286 (333)
401 KOG4507 Uncharacterized conser 55.5 60 0.0013 31.3 7.4 85 170-255 620-704 (886)
402 PF09868 DUF2095: Uncharacteri 55.2 59 0.0013 23.6 5.7 38 94-133 67-104 (128)
403 KOG2471 TPR repeat-containing 55.1 1.3E+02 0.0028 28.5 9.2 109 271-383 248-382 (696)
404 PF14669 Asp_Glu_race_2: Putat 54.9 1.2E+02 0.0025 24.8 13.0 143 82-255 2-160 (233)
405 COG4785 NlpI Lipoprotein NlpI, 54.8 1.3E+02 0.0027 25.2 13.7 183 171-364 79-267 (297)
406 PRK10941 hypothetical protein; 54.7 1.4E+02 0.0031 25.8 10.5 79 301-381 183-262 (269)
407 PF12862 Apc5: Anaphase-promot 53.8 73 0.0016 22.2 7.2 54 273-327 8-69 (94)
408 KOG0890 Protein kinase of the 53.5 4.2E+02 0.0091 30.8 22.1 63 299-364 1670-1732(2382)
409 PRK14956 DNA polymerase III su 53.1 2E+02 0.0043 27.5 10.5 38 191-228 247-284 (484)
410 PF09670 Cas_Cas02710: CRISPR- 51.7 2E+02 0.0043 26.5 12.4 57 164-221 138-198 (379)
411 PF10366 Vps39_1: Vacuolar sor 51.2 92 0.002 22.6 7.1 27 194-220 41-67 (108)
412 PF07575 Nucleopor_Nup85: Nup8 51.0 89 0.0019 30.6 8.4 68 214-284 392-459 (566)
413 KOG2908 26S proteasome regulat 50.8 1.9E+02 0.004 26.0 9.3 70 159-228 77-156 (380)
414 PF09454 Vps23_core: Vps23 cor 50.4 38 0.00083 21.9 3.9 50 332-383 6-55 (65)
415 KOG1464 COP9 signalosome, subu 50.3 1.7E+02 0.0036 25.3 19.7 90 130-219 71-172 (440)
416 PRK10564 maltose regulon perip 50.2 35 0.00075 29.8 4.8 36 155-190 254-290 (303)
417 PF01347 Vitellogenin_N: Lipop 49.5 2.7E+02 0.0059 27.5 15.9 62 126-188 348-409 (618)
418 PF14853 Fis1_TPR_C: Fis1 C-te 48.9 62 0.0013 19.9 5.1 21 200-220 9-29 (53)
419 PRK09857 putative transposase; 48.8 1.2E+02 0.0026 26.6 8.1 63 339-403 211-273 (292)
420 COG2909 MalT ATP-dependent tra 47.2 3.4E+02 0.0073 27.9 28.7 329 55-395 287-684 (894)
421 PRK14136 recX recombination re 46.7 2.1E+02 0.0045 25.3 9.7 23 195-217 278-301 (309)
422 PRK11639 zinc uptake transcrip 46.3 1.2E+02 0.0026 24.0 7.2 38 204-241 37-74 (169)
423 PF02184 HAT: HAT (Half-A-TPR) 46.2 20 0.00043 19.3 1.8 13 350-362 3-15 (32)
424 PF08311 Mad3_BUB1_I: Mad3/BUB 46.1 1.2E+02 0.0027 22.6 8.1 41 142-182 81-124 (126)
425 PF13929 mRNA_stabil: mRNA sta 45.4 2.1E+02 0.0046 25.0 22.2 117 242-359 143-263 (292)
426 PF11768 DUF3312: Protein of u 45.3 2.9E+02 0.0063 26.6 11.9 22 233-254 414-435 (545)
427 PF08314 Sec39: Secretory path 45.2 3.1E+02 0.0066 27.9 11.4 198 187-386 427-649 (715)
428 COG5108 RPO41 Mitochondrial DN 45.0 1.2E+02 0.0026 29.9 7.7 91 162-255 33-131 (1117)
429 PF09454 Vps23_core: Vps23 cor 44.9 84 0.0018 20.3 6.0 52 85-138 5-56 (65)
430 KOG2062 26S proteasome regulat 44.8 3.4E+02 0.0074 27.3 12.5 204 173-381 39-254 (929)
431 TIGR03184 DNA_S_dndE DNA sulfu 44.5 1E+02 0.0023 22.2 5.8 21 244-264 5-26 (105)
432 PHA03100 ankyrin repeat protei 43.9 2.9E+02 0.0062 26.2 12.2 209 128-358 36-271 (480)
433 PF10255 Paf67: RNA polymerase 43.9 1.4E+02 0.0031 27.6 7.9 61 230-291 125-191 (404)
434 KOG2908 26S proteasome regulat 43.8 2.4E+02 0.0053 25.3 10.0 60 232-292 80-143 (380)
435 PHA03100 ankyrin repeat protei 43.7 2.9E+02 0.0063 26.2 12.6 142 73-226 48-203 (480)
436 PRK13342 recombination factor 43.1 2.8E+02 0.0061 25.8 16.6 31 206-236 244-274 (413)
437 KOG0686 COP9 signalosome, subu 43.1 2.7E+02 0.006 25.7 15.4 166 157-326 150-331 (466)
438 smart00804 TAP_C C-terminal do 42.9 25 0.00055 22.5 2.2 24 102-125 39-62 (63)
439 PF11663 Toxin_YhaV: Toxin wit 42.9 21 0.00045 26.9 2.1 24 382-405 107-130 (140)
440 PF11838 ERAP1_C: ERAP1-like C 42.9 2.4E+02 0.0052 24.9 18.5 80 208-292 146-229 (324)
441 cd08789 CARD_IPS-1_RIG-I Caspa 42.8 1.1E+02 0.0024 21.0 6.3 63 72-144 20-82 (84)
442 KOG1498 26S proteasome regulat 42.6 2.7E+02 0.0059 25.5 17.1 100 268-375 136-253 (439)
443 KOG0687 26S proteasome regulat 42.6 2.5E+02 0.0054 25.1 15.2 20 233-252 110-129 (393)
444 KOG1114 Tripeptidyl peptidase 42.6 4.2E+02 0.0091 27.7 17.3 83 315-398 1212-1294(1304)
445 smart00386 HAT HAT (Half-A-TPR 41.8 50 0.0011 16.8 4.2 29 348-378 1-29 (33)
446 KOG2659 LisH motif-containing 41.4 2.1E+02 0.0046 24.0 8.8 68 84-151 22-91 (228)
447 COG4003 Uncharacterized protei 41.4 1.1E+02 0.0024 20.7 5.5 29 93-121 36-64 (98)
448 PF15297 CKAP2_C: Cytoskeleton 41.1 2.4E+02 0.0052 25.4 8.5 63 141-203 120-186 (353)
449 COG4003 Uncharacterized protei 40.9 59 0.0013 21.9 3.7 32 339-370 36-67 (98)
450 KOG4567 GTPase-activating prot 40.5 2.1E+02 0.0045 25.3 7.8 71 212-289 263-343 (370)
451 PF13762 MNE1: Mitochondrial s 40.4 1.7E+02 0.0037 22.6 11.6 47 300-346 80-127 (145)
452 PF11768 DUF3312: Protein of u 40.3 3.5E+02 0.0076 26.1 10.6 67 266-333 411-478 (545)
453 cd07153 Fur_like Ferric uptake 39.3 79 0.0017 23.0 4.9 47 305-351 6-52 (116)
454 PF12926 MOZART2: Mitotic-spin 38.8 1.3E+02 0.0028 20.7 7.9 42 178-219 29-70 (88)
455 KOG0508 Ankyrin repeat protein 38.7 2.2E+02 0.0047 26.9 8.1 256 73-342 97-384 (615)
456 PRK12323 DNA polymerase III su 38.6 4.2E+02 0.0092 26.6 12.3 33 82-116 199-231 (700)
457 PF04090 RNA_pol_I_TF: RNA pol 38.4 1.9E+02 0.004 23.8 7.0 30 89-118 42-71 (199)
458 PF11123 DNA_Packaging_2: DNA 38.2 1.2E+02 0.0026 20.1 5.3 31 139-169 12-43 (82)
459 PRK09462 fur ferric uptake reg 38.0 1.9E+02 0.004 22.3 7.0 35 243-278 33-67 (148)
460 COG5159 RPN6 26S proteasome re 38.0 2.8E+02 0.006 24.3 15.7 153 94-247 9-185 (421)
461 PF05944 Phage_term_smal: Phag 37.4 1.3E+02 0.0029 22.7 5.7 51 73-123 33-83 (132)
462 PF08870 DUF1832: Domain of un 37.4 1.3E+02 0.0029 22.0 5.5 21 244-264 6-27 (113)
463 PF07678 A2M_comp: A-macroglob 37.1 1.3E+02 0.0028 25.7 6.4 17 239-255 204-220 (246)
464 PRK10941 hypothetical protein; 36.9 2.8E+02 0.0061 24.1 10.6 70 195-265 184-253 (269)
465 PF01475 FUR: Ferric uptake re 36.7 71 0.0015 23.5 4.3 46 304-349 12-57 (120)
466 cd08812 CARD_RIG-I_like Caspas 36.6 1.4E+02 0.0031 20.6 7.1 66 71-144 20-86 (88)
467 cd08790 DED_DEDD Death Effecto 36.3 53 0.0012 23.1 3.1 57 346-405 36-92 (97)
468 COG2987 HutU Urocanate hydrata 35.8 32 0.00069 31.7 2.5 47 347-407 216-262 (561)
469 cd07153 Fur_like Ferric uptake 35.7 93 0.002 22.6 4.8 36 206-241 14-49 (116)
470 PF05944 Phage_term_smal: Phag 35.3 1.3E+02 0.0028 22.8 5.4 23 308-330 57-79 (132)
471 PF09986 DUF2225: Uncharacteri 35.1 2.7E+02 0.0057 23.2 7.8 61 315-375 141-206 (214)
472 PRK08691 DNA polymerase III su 34.9 5E+02 0.011 26.3 10.6 85 316-403 182-278 (709)
473 COG2137 OraA Uncharacterized p 34.8 2.4E+02 0.0052 22.6 10.9 9 179-187 90-98 (174)
474 PRK09462 fur ferric uptake reg 34.7 2.1E+02 0.0046 22.0 6.9 62 77-140 6-68 (148)
475 KOG1308 Hsp70-interacting prot 34.5 20 0.00044 31.7 1.1 86 101-188 127-213 (377)
476 PF08424 NRDE-2: NRDE-2, neces 34.1 3.4E+02 0.0074 24.2 19.0 26 305-330 160-185 (321)
477 PF10255 Paf67: RNA polymerase 33.8 4E+02 0.0086 24.8 11.8 59 126-184 124-191 (404)
478 KOG0292 Vesicle coat complex C 33.6 2.5E+02 0.0054 28.9 8.1 30 226-255 671-700 (1202)
479 PRK14962 DNA polymerase III su 33.2 4.4E+02 0.0095 25.2 13.4 47 194-241 246-292 (472)
480 PRK14956 DNA polymerase III su 33.0 4.5E+02 0.0097 25.2 13.3 87 82-191 196-282 (484)
481 PF13877 RPAP3_C: Potential Mo 32.8 1E+02 0.0022 21.5 4.3 23 126-148 67-89 (94)
482 cd08318 Death_NMPP84 Death dom 32.4 66 0.0014 22.1 3.2 41 104-147 46-86 (86)
483 PRK14961 DNA polymerase III su 32.0 4E+02 0.0086 24.3 10.1 53 311-364 210-275 (363)
484 PF01475 FUR: Ferric uptake re 31.8 86 0.0019 23.0 4.0 43 199-241 14-56 (120)
485 PF12926 MOZART2: Mitotic-spin 31.7 1.8E+02 0.0038 20.1 7.9 43 213-255 29-71 (88)
486 KOG4642 Chaperone-dependent E3 31.7 3.3E+02 0.0071 23.3 9.2 115 98-215 20-140 (284)
487 KOG2034 Vacuolar sorting prote 31.6 6E+02 0.013 26.3 24.3 167 94-284 364-551 (911)
488 cd00280 TRFH Telomeric Repeat 31.1 2.9E+02 0.0063 22.4 10.8 23 305-327 117-139 (200)
489 KOG0292 Vesicle coat complex C 30.5 1.5E+02 0.0033 30.3 6.2 128 239-399 655-782 (1202)
490 KOG4567 GTPase-activating prot 30.4 3.9E+02 0.0085 23.7 9.5 71 247-324 263-343 (370)
491 KOG2396 HAT (Half-A-TPR) repea 30.3 5E+02 0.011 24.9 25.6 307 87-404 104-531 (568)
492 cd08315 Death_TRAILR_DR4_DR5 D 30.3 1.3E+02 0.0029 21.2 4.5 26 90-115 66-91 (96)
493 PF12796 Ank_2: Ankyrin repeat 30.1 1.7E+02 0.0038 19.6 5.8 9 137-145 7-15 (89)
494 KOG1114 Tripeptidyl peptidase 30.1 6.7E+02 0.015 26.4 12.7 71 243-315 1212-1283(1304)
495 PF09670 Cas_Cas02710: CRISPR- 30.0 4.4E+02 0.0096 24.3 11.8 19 237-255 141-159 (379)
496 PF07575 Nucleopor_Nup85: Nup8 29.8 5.5E+02 0.012 25.2 16.8 96 299-399 372-467 (566)
497 KOG4642 Chaperone-dependent E3 29.7 3.6E+02 0.0077 23.1 9.7 115 137-253 23-143 (284)
498 PRK14951 DNA polymerase III su 29.7 5.8E+02 0.012 25.5 10.4 92 309-403 180-283 (618)
499 PF03745 DUF309: Domain of unk 29.6 1.5E+02 0.0033 18.8 5.8 14 205-218 12-25 (62)
500 PF04910 Tcf25: Transcriptiona 29.1 4.5E+02 0.0097 24.0 17.5 58 305-362 109-167 (360)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-58 Score=453.26 Aligned_cols=354 Identities=16% Similarity=0.132 Sum_probs=335.0
Q ss_pred CCCCcccccccccccCCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 015370 36 SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMV 115 (408)
Q Consensus 36 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 115 (408)
|+..+|+.+|..| .+ ..+.+.|.+++++|.+.|..||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 435 pd~~Tyn~LL~a~--~k-------------~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 435 PTLSTFNMLMSVC--AS-------------SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred CCHHHHHHHHHHH--Hh-------------CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 5666666666554 11 23445678889999999999999999999999999999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--CCCCCC
Q 015370 116 THKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQ--SNLSFN 191 (408)
Q Consensus 116 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~p~ 191 (408)
+.| +.||..+|+.+|.+|++.|++++|.++|++|... .||..+|+.||.+|++.|++++|.++|++|.. .|+.||
T Consensus 500 ~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 500 NAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 998 8999999999999999999999999999999776 49999999999999999999999999999986 679999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 015370 192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 271 (408)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 271 (408)
..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|++++.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999994 99999999999999
Q ss_pred HHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 015370 272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 351 (408)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 351 (408)
+|++.|++++|.+ ++..|.+.+..|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 658 a~~k~G~~eeA~~-l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 658 VAGHAGDLDKAFE-ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 015370 352 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 408 (408)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 408 (408)
+|.++|++|.+.| ..||..+|++|+.+|++.|++++|.+++++|.+.|+.||..||
T Consensus 737 eAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 737 KALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999987 6899999999999999999999999999999999999998765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-58 Score=454.01 Aligned_cols=363 Identities=13% Similarity=0.104 Sum_probs=340.5
Q ss_pred ceeeeeccCCCCCcccccccccccCCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHH
Q 015370 27 ECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKH 106 (408)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 106 (408)
..+...|+.||..+|+.+|.+| .+.+. .+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y--~k~G~-------------vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTC--AKSGK-------------VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH--HhCcC-------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3445789999999999999997 44333 34677788889999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370 107 ALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFER 182 (408)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 182 (408)
|+++|+.|.+.| +.||..+|+.+|.+|++.|++++|.++|++|... .||..+|++||.+|++.|++++|.++|++
T Consensus 526 Al~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 526 AFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 9999999999999999999999999999999652 58999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 015370 183 VKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 262 (408)
Q Consensus 183 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 262 (408)
|.+.|++|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.|+
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd 683 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLG 683 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 499999
Q ss_pred HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHH
Q 015370 263 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 342 (408)
Q Consensus 263 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 342 (408)
..+|++||.+|++.|++++|.+ ++++|...+..||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~-lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALE-LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHhc
Q 015370 343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD----V-------------------GLTEKANEFHMLLLQK 399 (408)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~ 399 (408)
+|++.|++++|.++|++|.+.| +.||..+|++|+..|.+ + +..++|..+|++|++.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999987 78999999999976542 1 1246799999999999
Q ss_pred CCCCCCCCC
Q 015370 400 NCAPTNASG 408 (408)
Q Consensus 400 g~~p~~~ty 408 (408)
|+.||..||
T Consensus 842 Gi~Pd~~T~ 850 (1060)
T PLN03218 842 GTLPTMEVL 850 (1060)
T ss_pred CCCCCHHHH
Confidence 999998876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-52 Score=419.43 Aligned_cols=368 Identities=13% Similarity=0.114 Sum_probs=301.0
Q ss_pred ceeeeeccCCCCCcccccccccccCCCCcchHHHHHhhhcC------------------CCCcHHHHHHHHHHcCCCCCh
Q 015370 27 ECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISL------------------PKRSATNVIQRWVSEGNQATV 88 (408)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~------------------~~~~a~~~l~~~~~~g~~~~~ 88 (408)
..+.+.|+.||+.++|++|++| .+++..+.+.++|..-. ..+.|.++|++|.+.|+.||.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y--~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMY--VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHH--hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 3445779999999999999999 88888777777776422 335678999999999999999
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA 168 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~ 168 (408)
.+|+.++.+|++.|+++.+.+++..|.+.| +.||..+|+.++.+|++.|++++|.++|++|.. ||..+||++|.+|+
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~ 365 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYE 365 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHH
Confidence 999999999999999999999999999998 999999999999999999999999999999985 89999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 248 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 248 (408)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+++|++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
+|++|.+ +|..+|++++.+|++.|+.++|.. +|.+|.. +..||..||+.++.+|++.|+++.+.+++..|.+.
T Consensus 446 vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~-lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 446 VFHNIPE-----KDVISWTSIIAGLRLNNRCFEALI-FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHH-HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 9999876 467788888888888888888888 8888865 46778888877777777777777777776666666
Q ss_pred cCCCChh------------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 329 KQKMTSR------------------------------NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 329 ~~~p~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
|+.+|.. +|+++|.+|++.|+.++|.++|++|.+.| ..||..||+.++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~ 597 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLC 597 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHH
Confidence 6655544 45555555555555555555555555544 4455555555555
Q ss_pred HHHhcCChHHHHHHHHHHH-hcCCCCCCCC
Q 015370 379 AFSDVGLTEKANEFHMLLL-QKNCAPTNAS 407 (408)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t 407 (408)
+|.+.|++++|.++|++|. +.|+.|+..|
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 5555555555555555555 4455555444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-52 Score=406.70 Aligned_cols=355 Identities=16% Similarity=0.142 Sum_probs=314.7
Q ss_pred eeeeccCCCCCcccccccccccCCCCcchHHHHHhhhc------------------CCCCcHHHHHHHHHHcCCCCChhh
Q 015370 29 FFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRIS------------------LPKRSATNVIQRWVSEGNQATVSE 90 (408)
Q Consensus 29 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------------------~~~~~a~~~l~~~~~~g~~~~~~~ 90 (408)
+...|+.||+.++|.+|+.| .+++..+-+.++|..- ...+.|.++|++|.+.|..|+..+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y--~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMH--VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred HHHhCCCcchHHHHHHHHHH--hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 34668889999999999888 7777666666666532 234567888888888888888888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcC
Q 015370 91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGA 170 (408)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~ 170 (408)
|+.++.+|++.|+.+.+.+++..+.+.| +.||..+|+.++++|++.|++++|.++|++|.. +|+.+||+||.+|++.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhC
Confidence 8888888888888888888888888887 889999999999999999999999999999985 7999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370 171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++++++|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHh-cc
Q 015370 251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM-TK 329 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~ 329 (408)
++|.+ ||..+||+||.+|++.|+.++|.+ ++++|.+.+..||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus 384 ~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~-lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 384 DRMPR-----KNLISWNALIAGYGNHGRGTKAVE-MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HhCCC-----CCeeeHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99875 588899999999999999999999 999999999999999999999999999999999999999976 58
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+.|+..+|++++++|++.|++++|.+++++| ...|+..+|++|+.+|...|+++.|..+++++.+
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999999999999999999999998876 2567777777777777766666666666666643
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-51 Score=408.87 Aligned_cols=361 Identities=14% Similarity=0.072 Sum_probs=332.8
Q ss_pred eeccCCCCCcccccccccccCCCCcchHHHHHhhhc------------------CCCCcHHHHHHHHHHcCCCCChhhHH
Q 015370 31 YSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRIS------------------LPKRSATNVIQRWVSEGNQATVSELR 92 (408)
Q Consensus 31 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------------------~~~~~a~~~l~~~~~~g~~~~~~~~~ 92 (408)
..|+.+++.++|++|..| .+++..+-+.++|..- ...+.|.++|++|...|+.||..||+
T Consensus 114 ~~~~~~~~~~~n~li~~~--~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~ 191 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMF--VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP 191 (857)
T ss_pred HcCCCCCchHHHHHHHHH--HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 456677778888888887 6666655555555432 23456788999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW 172 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 172 (408)
.++++|+..+++..+.+++..|.+.| +.||..+|+.++.+|++.|++++|.++|++|+. ||..+||++|.+|++.|+
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCC
Confidence 99999999999999999999999987 899999999999999999999999999999985 899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 252 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 252 (408)
+++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 015370 253 MSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 332 (408)
Q Consensus 253 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 332 (408)
|.. ||..+|++++.+|++.|++++|.+ ++.+|.+.+..||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 349 m~~-----~d~~s~n~li~~~~~~g~~~~A~~-lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 349 MET-----KDAVSWTAMISGYEKNGLPDKALE-TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred CCC-----CCeeeHHHHHHHHHhCCCHHHHHH-HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 975 688899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 015370 333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 408 (408)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 408 (408)
+..+|+.||++|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.+ ++.||..||
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 99999999999999999999999999974 46888999999999999999999999999975 689998875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-51 Score=399.23 Aligned_cols=329 Identities=12% Similarity=0.133 Sum_probs=286.2
Q ss_pred cCCCCcHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHH
Q 015370 66 SLPKRSATNVIQRWVSEG-NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGE 144 (408)
Q Consensus 66 ~~~~~~a~~~l~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 144 (408)
....+.|.++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.| +.||..+|+.++.+|++.|++++|.
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHH
Confidence 345678999999998765 78999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-------------------------------
Q 015370 145 RYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL------------------------------- 193 (408)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------------------------------- 193 (408)
++|++|.. ||..+||+++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 179 ~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 179 RLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred HHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 99999986 899999999999999999999999999998877666554
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 015370 194 ----MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 269 (408)
Q Consensus 194 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 269 (408)
+||+|+.+|++.|++++|.++|++|.. +|..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|+++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~l 331 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIM 331 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Confidence 456677778888888888888888754 5778888888888888888888888888887 4888888888888
Q ss_pred HHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370 270 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349 (408)
Q Consensus 270 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (408)
+.+|++.|++++|.+ ++..|.+.+..||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+
T Consensus 332 l~a~~~~g~~~~a~~-i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 332 IRIFSRLALLEHAKQ-AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHhccchHHHHH-HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCC
Confidence 888888888888888 88888888888888888888888888888888888888875 4688888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCCCCC
Q 015370 350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPTNASG 408 (408)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty 408 (408)
.++|.++|++|.+.| +.||..||++++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|
T Consensus 407 ~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 407 GTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 888888888888876 678888888888888888888888888888875 5888888776
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.4e-23 Score=192.98 Aligned_cols=302 Identities=12% Similarity=0.049 Sum_probs=256.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-----CHHHHHHHHHHHH
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-----TSETYTALLHLYA 168 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~ll~~~~ 168 (408)
....+...|++++|++.|+++.+.+ +.+..++..+...+...|++++|..+++.+...++ +...+..+...|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999864 44567889999999999999999999998877532 1357889999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNID 244 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 244 (408)
+.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999864 457889999999999999999999999999986644332 24556777888999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 324 (408)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 324 (408)
+|...|+++.+. .+.+...+..+...|.+.|++++|.+ .+.++....+.....+++.++.+|...|++++|.+.+++
T Consensus 198 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 198 AARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIE-ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999873 34556778889999999999999999 999988765544456788999999999999999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCC
Q 015370 325 LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~ 401 (408)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 8876 466667788999999999999999999999875 4788899988888775 5689999999999999998
Q ss_pred CCCCC
Q 015370 402 APTNA 406 (408)
Q Consensus 402 ~p~~~ 406 (408)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 88764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=2e-21 Score=197.77 Aligned_cols=314 Identities=12% Similarity=0.032 Sum_probs=189.8
Q ss_pred CcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhc
Q 015370 70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG 149 (408)
Q Consensus 70 ~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 149 (408)
+.|..+++.+.+. .+.+...|..+...+...|++++|++.|+.+.+.. +.+...+..+..++.+.|++++|..+|++
T Consensus 584 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 584 KKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444432 23445556666666666666666666666665542 33445555555666666666666666665
Q ss_pred CCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015370 150 LPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 228 (408)
Q Consensus 150 ~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 228 (408)
+.... .+..++..+...+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|...|+.+...+ |+..
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 54442 235566666666666666666666666666554 3455566666666666666666666666666543 3334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHH
Q 015370 229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL 308 (408)
Q Consensus 229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 308 (408)
++..+..++.+.|++++|.+.++++.+. .+.+...+..+...|.+.|++++|.. .++++.+..+ .+...++.+...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p-~~~~~~~~l~~~ 813 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIK-HYRTVVKKAP-DNAVVLNNLAWL 813 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHH
Confidence 5555666666666666666666666652 34555666666666666666666666 6666655543 355566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015370 309 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEK 388 (408)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 388 (408)
+...|+ .+|+.++++....... +...+..+...+.+.|++++|..+++++.+.+ +.+..++..+..++.+.|++++
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHH
Confidence 666666 5666666666554221 33445556666777777777777777777654 2366667777777777777777
Q ss_pred HHHHHHHHH
Q 015370 389 ANEFHMLLL 397 (408)
Q Consensus 389 a~~~~~~m~ 397 (408)
|.+++++|+
T Consensus 890 A~~~~~~~~ 898 (899)
T TIGR02917 890 ARKELDKLL 898 (899)
T ss_pred HHHHHHHHh
Confidence 777777765
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=2.2e-20 Score=190.18 Aligned_cols=298 Identities=13% Similarity=0.077 Sum_probs=155.3
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYA 168 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~ 168 (408)
.+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+.+.|+.++|..+|+++.... .+...+..++..+.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 33344444444444444444444444432 2233444444444444455555555444443321 23444444555555
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 248 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 248 (408)
+.|++++|..+++++.+.. +.+..+|..+...|...|++++|...|+.+.+... .+...+..+..++...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 33445555555555555555555555555554321 234445555555555555555555
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
+++++.+. .+.+...+..++..+...|++++|.+ ++..+....+ .+...+..+...+...|++++|.+.|+.+...
T Consensus 657 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 657 SLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKK-IAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 55555542 23344555555555555555555555 5555444432 24445555555666666666666666655554
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 329 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.
T Consensus 733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 3 333455555666666666666666666665543 345556666666666666666666666666653
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.6e-20 Score=169.62 Aligned_cols=296 Identities=13% Similarity=0.023 Sum_probs=242.9
Q ss_pred cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHHhhcChHH
Q 015370 66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS---DSDYATRIDLMTKVFGIHS 142 (408)
Q Consensus 66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 142 (408)
....+.|...++++.+.+ +.+..++..+...+...|++++|.++++.+...+ ..++ ...+..+...+.+.|++++
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 456677999999998863 4567789999999999999999999999998754 1121 2567888999999999999
Q ss_pred HHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 143 GERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEE 217 (408)
Q Consensus 143 a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 217 (408)
|..+|+++... +.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|...|++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999875 45688999999999999999999999999988753322 22456778888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC
Q 015370 218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 297 (408)
Q Consensus 218 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (408)
+.+... .+...+..+...+.+.|++++|.++++++.+. .......+++.++.+|.+.|++++|.. .+..+.+.. |
T Consensus 206 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~-~l~~~~~~~--p 280 (389)
T PRK11788 206 ALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLE-FLRRALEEY--P 280 (389)
T ss_pred HHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC--C
Confidence 987642 24667888889999999999999999999873 222224568899999999999999999 888887764 4
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCHH
Q 015370 298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM---LGHLKEVGEIIDQWKQSATSDFDIS 371 (408)
Q Consensus 298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 371 (408)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.+ +.|+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence 5556688999999999999999999988776 6888899888887775 558999999999999865 344443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.2e-18 Score=166.63 Aligned_cols=328 Identities=11% Similarity=-0.008 Sum_probs=264.8
Q ss_pred HHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhh
Q 015370 58 LKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKV 137 (408)
Q Consensus 58 l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (408)
+...... ..+...|..+++...... +-+...+..++.+....|++++|++.++++.+.. +.+...+..+...+...
T Consensus 48 ~~~~~~~-~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 48 FAIACLR-KDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHh-cCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHc
Confidence 3444444 467788888888877763 4456666677788888999999999999999864 45567888888999999
Q ss_pred cChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370 138 FGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216 (408)
Q Consensus 138 g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 216 (408)
|++++|...|++..... .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999987764 468889999999999999999999999887764 2334444444 45788999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh----hHHHHHHHHHH
Q 015370 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN----AESSTLVEAEK 292 (408)
Q Consensus 217 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~ 292 (408)
.+......++...+..+..++...|++++|...++++... .+.+...+..+...|...|++++ |.. .++....
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~-~~~~Al~ 278 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAE-HWRHALQ 278 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHH-HHHHHHh
Confidence 9887654445556666678889999999999999999874 45677888899999999999986 788 7888776
Q ss_pred hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCH-H
Q 015370 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-S 371 (408)
Q Consensus 293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 371 (408)
..+. +...+..+...+...|++++|...+++....... +...+..+...+.+.|++++|...++++.+.. |+. .
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~ 353 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSK 353 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchH
Confidence 6543 6788999999999999999999999998876432 34556678899999999999999999998754 333 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
.+..+..++...|++++|...|++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444677889999999999999998873
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.6e-17 Score=156.84 Aligned_cols=298 Identities=9% Similarity=-0.076 Sum_probs=245.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHc
Q 015370 91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAG 169 (408)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~ 169 (408)
...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++....| +...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4457788899999999999999999874 44456666677778889999999999999887754 57889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370 170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 249 (408)
Q Consensus 170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 249 (408)
.|++++|...+++..... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999864 4567889999999999999999999999887764433 2333333 347889999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH----HHHHHHHH
Q 015370 250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK----IDQIWKSL 325 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m 325 (408)
++.+.+. ...++...+..+...+.+.|++++|.. .+.......+. +...+..+...+...|++++ |...|++.
T Consensus 200 ~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~-~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 200 ARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQ-TGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9998774 222344455666788999999999999 88888876543 67788889999999999986 89999988
Q ss_pred HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 326 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 326 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
.+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.+.
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 876432 55678889999999999999999999999864 345667888999999999999999999999874
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.2e-15 Score=147.80 Aligned_cols=321 Identities=7% Similarity=-0.065 Sum_probs=214.2
Q ss_pred CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370 67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY 146 (408)
Q Consensus 67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 146 (408)
...+.|...+++.++ ..|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|+..
T Consensus 141 ~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455677888877665 45677888899999999999999999999998854 34566777788888888888777543
Q ss_pred HhcC----------------------------------------------------------------------------
Q 015370 147 FEGL---------------------------------------------------------------------------- 150 (408)
Q Consensus 147 ~~~~---------------------------------------------------------------------------- 150 (408)
|...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 3211
Q ss_pred ------------------------CCC---CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370 151 ------------------------PLS---AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 202 (408)
Q Consensus 151 ------------------------~~~---~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 202 (408)
... .| +...|+.+...+...|++++|+..|++..+.. +-+..+|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 100 01 12344555555666677777777777766653 22345666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370 203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 282 (408)
Q Consensus 203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 282 (408)
...|++++|...|++..+... .+..+|..+...+...|++++|...|++..+. .+.+...+..+...+.+.|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777766432 24566667777777777777777777777762 344566666777777777777777
Q ss_pred HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh------HHHHHHHHHhcCCHHHHHHH
Q 015370 283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN------YICILSSYLMLGHLKEVGEI 356 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~li~~~~~~g~~~~A~~~ 356 (408)
.. .+....+..+ .+...|+.+...+...|++++|.+.|++........+... ++.....+...|++++|.++
T Consensus 453 ~~-~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 453 MA-TFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HH-HHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77 6766655432 2556777777777788888888888877665432211111 11112223345788888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 357 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
+++..+.. +.+...+..+...+.+.|++++|...|++..+.
T Consensus 531 ~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 531 CEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88776643 234556778888888888888888888887653
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.6e-15 Score=147.12 Aligned_cols=300 Identities=10% Similarity=-0.076 Sum_probs=238.7
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYA 168 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~ 168 (408)
.+......+.+.|++++|++.|++..+ ..|++..|..+..+|.+.|++++|++.++......| +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 355677888999999999999999987 467888999999999999999999999999877654 5789999999999
Q ss_pred cCCCHHHHHHHHHHHHhCC-----------------------------CCCChhhHHHHHHH------------------
Q 015370 169 GAKWTEKAEELFERVKQSN-----------------------------LSFNALMYNEMMTL------------------ 201 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~-----------------------------~~p~~~~~~~li~~------------------ 201 (408)
..|++++|+.-|......+ -+++...+..+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987665443211 01111111111000
Q ss_pred ------------H------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 015370 202 ------------Y------MSVGQVEKVALVVEEIKRKN-VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD 261 (408)
Q Consensus 202 ------------~------~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (408)
+ ...+++++|.+.|+.....+ ..| +...+..+...+...|++++|...+++..+. .+.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence 0 11257889999999998765 234 3466777888888999999999999999873 344
Q ss_pred CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370 262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 341 (408)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 341 (408)
....|..+...+...|++++|.. .+....+..+ .+...|..+...+...|++++|...|++..+.... +...+..+.
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEE-DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 56688899999999999999999 8888876643 36788999999999999999999999998876422 456677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
..+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|.+.|++.++.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 89999999999999999998753 446778889999999999999999999998874
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=2.2e-16 Score=141.18 Aligned_cols=329 Identities=13% Similarity=0.064 Sum_probs=254.5
Q ss_pred HHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh---------------
Q 015370 60 SRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD--------------- 124 (408)
Q Consensus 60 ~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------- 124 (408)
..+++.+.....|+..++.+++. .+-.+..|..+..++...|+.+.|.+.|....+. .|+.
T Consensus 123 aN~~kerg~~~~al~~y~~aiel-~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIEL-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhc-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhc
Confidence 35566566667777777777664 2334666777777777777777777777766653 2332
Q ss_pred --------------------HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015370 125 --------------------SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERV 183 (408)
Q Consensus 125 --------------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m 183 (408)
..|+.|...+-..|++..|++.|++.....|+ ...|-.|.+.|...+.+++|...|.+.
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 23333444444566777777777776666555 677888888888888888888888887
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 015370 184 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 262 (408)
Q Consensus 184 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 262 (408)
.... +-...++..|...|..+|++|.|...|++..+. .|+ ...|+.+..++-..|++.+|.+.+.+... -.+..
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~h 353 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNH 353 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCcc
Confidence 7653 334667888888888899999999999998874 455 57899999999999999999999999987 34556
Q ss_pred HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhHHHHH
Q 015370 263 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICIL 341 (408)
Q Consensus 263 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li 341 (408)
....+.|...|...|.+++|.. ++.....-.+. -...+|.|...|-+.|++++|+..|++..+. +|+ ...|+.+.
T Consensus 354 adam~NLgni~~E~~~~e~A~~-ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmG 429 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATR-LYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHH-HHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcc
Confidence 6778899999999999999999 78777665443 4567889999999999999999999987764 665 45788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
..|-..|+.+.|.+.+.+.+.-+ +.-...++.|...|...|++.+|..-|++.++ ++||.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999999999999998743 22346788999999999999999999999988 77774
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=6.1e-15 Score=152.24 Aligned_cols=324 Identities=10% Similarity=0.025 Sum_probs=219.0
Q ss_pred CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHH------------HHHHHHH
Q 015370 67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDY------------ATRIDLM 134 (408)
Q Consensus 67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~li~~~ 134 (408)
...+.|...+++..+. .+.+...+..+...+.+.|++++|+..|++..+..+-.+....+ ......+
T Consensus 283 g~~~~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 4456778888877765 34477888899999999999999999999988754211221112 1224466
Q ss_pred HhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH--------------
Q 015370 135 TKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM-------------- 199 (408)
Q Consensus 135 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li-------------- 199 (408)
.+.|++++|+..|++..... .+...+..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 78899999999999887764 457788888999999999999999999988764 22333333332
Q ss_pred ----------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015370 200 ----------------------------TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 251 (408)
Q Consensus 200 ----------------------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 251 (408)
..+...|++++|.+.|++..+.... +...+..+...|.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344578888888888888775432 45666777888888888888888888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH---------------------------------------
Q 015370 252 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK--------------------------------------- 292 (408)
Q Consensus 252 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------------------------- 292 (408)
++.+. .+.+...+..+...+.+.++.++|.. .+..+..
T Consensus 520 ~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~-~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 520 RLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALA-HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHH-HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 87763 22333333333333333444444433 2222100
Q ss_pred hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHH
Q 015370 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 372 (408)
Q Consensus 293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 372 (408)
...+.+...+..+...+.+.|++++|++.|++..+.... +...+..+...|...|++++|++.++...+.. +.+...
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~ 673 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNT 673 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHH
Confidence 012234445566777777888888888888877766422 45667777888888888888888888776542 234556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 373 CNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 373 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
+..+..++...|++++|.+++++++..
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666777778888888888888887764
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=1.5e-14 Score=149.32 Aligned_cols=321 Identities=9% Similarity=-0.018 Sum_probs=221.5
Q ss_pred CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370 68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF 147 (408)
Q Consensus 68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 147 (408)
+.+.|...+++..+. .+.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.++|..++
T Consensus 366 ~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 366 NLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 445566777776665 34456677788899999999999999999998753 334555555555553 34566777666
Q ss_pred hcCCCCCC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 148 EGLPLSAK----------TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217 (408)
Q Consensus 148 ~~~~~~~~----------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 217 (408)
+.+....+ ....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66543211 12234445566667777777777777776654 33455666677777777777777777777
Q ss_pred HHhCCCCCCHHHHHH--------------------------------------------HHHHHHhcCCHHHHHHHHHHH
Q 015370 218 IKRKNVVPDIFTYNL--------------------------------------------WISSCAATLNIDQVKKFLDEM 253 (408)
Q Consensus 218 m~~~g~~p~~~~~~~--------------------------------------------ll~~~~~~g~~~~a~~~~~~~ 253 (408)
+.+.... +...+.. +...+...|+.++|..+++.
T Consensus 521 al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 521 LAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 6653221 2222222 22334455556666655541
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-
Q 015370 254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM- 332 (408)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 332 (408)
.+.+...+..+...+.+.|++++|+. .++.+....+. +...+..++..|...|++++|++.++...+. .|
T Consensus 599 -----~p~~~~~~~~La~~~~~~g~~~~A~~-~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~ 669 (1157)
T PRK11447 599 -----QPPSTRIDLTLADWAQQRGDYAAARA-AYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--AND 669 (1157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 23455667788999999999999999 88888877544 7788999999999999999999999987664 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCC
Q 015370 333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF----DISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPT 404 (408)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 404 (408)
+...+..+..++...|++++|.++++++.......| +...+..+...+...|++++|.+.|++.+. .|+.|+
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 344566678888999999999999999987532222 234566678889999999999999999753 456553
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=5.5e-16 Score=138.63 Aligned_cols=305 Identities=13% Similarity=0.032 Sum_probs=197.4
Q ss_pred CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHH-HHHH
Q 015370 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSET-YTAL 163 (408)
Q Consensus 85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~l 163 (408)
+.-.++|..+.+.+...|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+..+..|+... .+.+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 3456788889999999999999999999999863 335788999999999999999999998887766665433 3344
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLN 242 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 242 (408)
...+-..|++++|...|.+.++.. +-=..+|+.|...+-.+|+...|+..|++.... .|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 455555677777777777766653 112456777777777777777777777776653 343 3456666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 322 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 322 (408)
++.|...+.+.... -+.....+..+...|...|.++.|+. .+++..+..+. -...|+.|..++-..|++.+|.+.|
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~-~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAID-TYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHH-HHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 66666666665542 23344556666666666666666666 66655544322 2346666666666666666666666
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 015370 323 KSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA 402 (408)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 402 (408)
.+....... -..+.+.|...|...|.+++|..+|....+-. +--...++.|...|-..|++++|+.-|++.+. |.
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 655543211 23345556666666666666666666655422 11234455666666666666666666666555 44
Q ss_pred C
Q 015370 403 P 403 (408)
Q Consensus 403 p 403 (408)
|
T Consensus 419 P 419 (966)
T KOG4626|consen 419 P 419 (966)
T ss_pred c
Confidence 4
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=3.3e-14 Score=140.62 Aligned_cols=328 Identities=10% Similarity=-0.030 Sum_probs=196.4
Q ss_pred CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370 67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY 146 (408)
Q Consensus 67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 146 (408)
.....|.+++...... .+.+...+..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|...
T Consensus 29 g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 29 GQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4445555555555441 23445557777777777777777877777777653 34455666666777777777777777
Q ss_pred HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH------------
Q 015370 147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL------------ 213 (408)
Q Consensus 147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~------------ 213 (408)
++++....| +.. +..+..++...|+.++|+..++++.+.. |.+...+..+..++...|+.++|+.
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 777665533 455 7777777777777777777777777764 3344455555555555555444333
Q ss_pred ----------------------------------HHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHH
Q 015370 214 ----------------------------------VVEEIKRK-NVVPDIF-TY----NLWISSCAATLNIDQVKKFLDEM 253 (408)
Q Consensus 214 ----------------------------------~~~~m~~~-g~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~ 253 (408)
.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33333321 1112211 11 11123445667777888888877
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370 254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ 330 (408)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 330 (408)
.+.....|+. ....+...|...|++++|.. .++.+....+.. .......+..++...|++++|.++++.+.....
T Consensus 264 l~~~~~~P~~-a~~~la~~yl~~g~~e~A~~-~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 264 KAEGQIIPPW-AQRWVASAYLKLHQPEKAQS-ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred hccCCCCCHH-HHHHHHHHHHhcCCcHHHHH-HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 7642111222 11224667777788888887 777665543221 123344555566777888888877777765421
Q ss_pred -----------CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370 331 -----------KMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 331 -----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 396 (408)
.|+. ..+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++.
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1221 123445666777777777777777777653 345666777777777777777777777777
Q ss_pred HhcCCCCCC
Q 015370 397 LQKNCAPTN 405 (408)
Q Consensus 397 ~~~g~~p~~ 405 (408)
++ +.||.
T Consensus 420 l~--l~Pd~ 426 (765)
T PRK10049 420 EV--LEPRN 426 (765)
T ss_pred Hh--hCCCC
Confidence 66 44654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=5.4e-14 Score=139.06 Aligned_cols=328 Identities=9% Similarity=0.018 Sum_probs=231.4
Q ss_pred CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370 67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY 146 (408)
Q Consensus 67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 146 (408)
.....|.+.+++..+. .+.+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..
T Consensus 63 g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 63 KQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 4445666666666554 34456666777777888888888888888887753 44455 77777778888888888888
Q ss_pred HhcCCCCCC-CHHHHHHHHHHHHcCCCHHH----------------------------------------------HHHH
Q 015370 147 FEGLPLSAK-TSETYTALLHLYAGAKWTEK----------------------------------------------AEEL 179 (408)
Q Consensus 147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~----------------------------------------------A~~~ 179 (408)
++++....| +...+..+..++...+..++ |++.
T Consensus 139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 887776644 45555555666655555544 4444
Q ss_pred HHHHHhC-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 180 FERVKQS-NLSFNAL-MYN----EMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLWISSCAATLNIDQVKKFLDE 252 (408)
Q Consensus 180 ~~~m~~~-~~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 252 (408)
++.+... .-.|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|+.+|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444432 1112211 111 1134456789999999999999987643 443 222256789999999999999999
Q ss_pred HhcCCCCCC--CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc-----------Cc---cchHHHHHHHHHhcCCHH
Q 015370 253 MSCDSGGSD--DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-----------RQ---WITYDFLIILYAGLGNKD 316 (408)
Q Consensus 253 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~---~~~~~~li~~~~~~~~~~ 316 (408)
+.+.....+ .......+..++...|++++|.. .+..+....+. |+ ...+..+...+...|+.+
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~-~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALT-VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH-HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 876321111 13456677778899999999999 88888766431 12 124456777888999999
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370 317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 396 (408)
+|+++++++....+. +...+..+...+...|++++|++.+++..... +.+...+..+...+.+.|++++|..+++++
T Consensus 377 eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 377 QAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998876432 56677788999999999999999999998854 345667777888899999999999999999
Q ss_pred HhcCCCCCC
Q 015370 397 LQKNCAPTN 405 (408)
Q Consensus 397 ~~~g~~p~~ 405 (408)
++ ..|+.
T Consensus 454 l~--~~Pd~ 460 (765)
T PRK10049 454 VA--REPQD 460 (765)
T ss_pred HH--hCCCC
Confidence 88 55654
No 21
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=4.3e-14 Score=129.16 Aligned_cols=284 Identities=10% Similarity=0.055 Sum_probs=223.3
Q ss_pred cccHHHHHHHHHHHHhccCCCCChHH-HHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHH--HHHHHHHcCCCHHHHH
Q 015370 101 SQRYKHALEISEWMVTHKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYT--ALLHLYAGAKWTEKAE 177 (408)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~A~ 177 (408)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+++.++.+..|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888765542 23333 33334566899999999999999988767754443 3367889999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 015370 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 178 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
+.++++.+.. |-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999886 557889999999999999999999999999988765333 23344444445556677777888
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370 251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ 330 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 330 (408)
+.+.+. .+.++.....+...+...|+.++|.+ ++.+..+. +++.. -.++.+....++.+++.+..+...+...
T Consensus 253 ~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~-~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQ-IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 877652 45688888999999999999999999 88777764 33332 1234444566999999999999887743
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
. |...+..+...+.+.+++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++-...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 4556778999999999999999999999874 588988889999999999999999999987653
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.2e-14 Score=122.15 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=193.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
.+..+|.+||.++|+-...+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|......||..|||+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 57889999999999999999999999999988888999999999987654333 78899999999999999999999
Q ss_pred HHHHhcCCHHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc--------cCccchH
Q 015370 235 SSCAATLNIDQ----VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT--------QRQWITY 302 (408)
Q Consensus 235 ~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~ 302 (408)
.+..+.|+++. |.+++.+|++ -|+.|+..+|..+|..+++.++..+....++.++..... +.|...|
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999998764 5678889999 599999999999999999998886544325666554321 2244556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc----CCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370 303 DFLIILYAGLGNKDKIDQIWKSLRMTK----QKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 375 (408)
Q Consensus 303 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 375 (408)
...+..|.+..+.+.|.++-.-+.... +.|+. .-|.-+..+.|+....+.-..+++.|+-.- .-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHH
Confidence 677888889999999988877554321 12221 225568888899999999999999998764 5688888899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q 015370 376 LLGAFSDVGLTEKANEFHMLLLQKN 400 (408)
Q Consensus 376 li~~~~~~g~~~~a~~~~~~m~~~g 400 (408)
++++....|.++-.-+++..++..|
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh
Confidence 9999999999999888888888766
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=9.7e-14 Score=119.27 Aligned_cols=311 Identities=14% Similarity=0.091 Sum_probs=227.0
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCCHHHHH
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYT 161 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 161 (408)
.+-+..+|..+|.++++--..+.|.+++.+..+.. .+.+..+||.+|.+-+-..+ .+++.+|... .||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 45678899999999999999999999999988765 68899999999977654433 4555565554 49999999
Q ss_pred HHHHHHHcCCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC----CHH
Q 015370 162 ALLHLYAGAKWTEK----AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK-VALVVEEIKR----KNVVP----DIF 228 (408)
Q Consensus 162 ~ll~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~p----~~~ 228 (408)
+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++.. +.++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998776 46677889999999999999999999998887644 4444444432 22333 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCCHH---HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH
Q 015370 229 TYNLWISSCAATLNIDQVKKFLDEMSCDS---GGSDDWV---KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 302 (408)
Q Consensus 229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 302 (408)
.|..-++.|.+..+.+.|.++..-..... -+.|+.. -|..+....|+....+.-.. .+..+.-...-|+..+.
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~-~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK-WYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccceecCCchhH
Confidence 67788888889999988888877665421 1233322 25677788888888888888 88888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccC-------------------CCC------------------------------
Q 015370 303 DFLIILYAGLGNKDKIDQIWKSLRMTKQ-------------------KMT------------------------------ 333 (408)
Q Consensus 303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------------~p~------------------------------ 333 (408)
..++.+....+.++-.-++|..++..|- .|+
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888888888888888888877776552 221
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370 334 -----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN---RLLGAFSDVGLTEKANEFHMLLLQKN 400 (408)
Q Consensus 334 -----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g 400 (408)
....+.+...+.+.|..++|.+++..+.+++..-|-....| -+++.-.+.++...|..+++-|...+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 11123444456677888888888887765543334444444 44555566677778888777776554
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2.3e-16 Score=137.79 Aligned_cols=260 Identities=15% Similarity=0.104 Sum_probs=92.6
Q ss_pred HHHHHHHhhcChHHHHHHHhc-CCCC-C-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370 129 TRIDLMTKVFGIHSGERYFEG-LPLS-A-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 205 (408)
Q Consensus 129 ~li~~~~~~g~~~~a~~~~~~-~~~~-~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 205 (408)
.+...+.+.|++++|.+++++ +... + .|...|..+.......++++.|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 445666677777777777744 3332 2 2455555566666667777777777777776652 245566666666 577
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHH
Q 015370 206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 285 (408)
Q Consensus 206 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 285 (408)
+++++|.+++...-+.. ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~- 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR- 167 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH-
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH-
Confidence 77777777776655432 345556666777777777777777777766543445666777777777777777777777
Q ss_pred HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 015370 286 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 365 (408)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 365 (408)
.+++..+..+. |....+.++..+...|+.+++.++++...+.. ..|+..+..+..+|...|+.++|..+|++..+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 77777666544 55566677777777777777777777666553 3344556677777777788888888888777654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 366 SDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
+.|......+..++...|+.++|.++.++..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 4467777777777778888888877776654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=9.9e-13 Score=128.29 Aligned_cols=328 Identities=12% Similarity=0.033 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370 68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF 147 (408)
Q Consensus 68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 147 (408)
....|...+++.. ............+...+...|++++|+++|+++.+.. +-++..+..++..+...++.++|++.+
T Consensus 83 ~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 83 RDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred CcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3344555555544 1112223333344668888899999999999999875 445677778888899999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-------------
Q 015370 148 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV------------- 214 (408)
Q Consensus 148 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~------------- 214 (408)
+++....|+...+-.++..+...++..+|++.++++.+.+ |-+...+..+..+..+.|-...|+++
T Consensus 160 ~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 160 TELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred HHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 9999887877777555555655677767999999999875 33555555555555555444333333
Q ss_pred -----------------------------------HHHHHh-CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 215 -----------------------------------VEEIKR-KNVVPDI-----FTYNLWISSCAATLNIDQVKKFLDEM 253 (408)
Q Consensus 215 -----------------------------------~~~m~~-~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~ 253 (408)
++.+.. .+-.|.. .+..-.+-++...|++.++++.++.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 222222 1111221 12223344677788888888888888
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc-----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT-----QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
... +.+.-..+-..+..+|...+++++|.. ++..+..... .++......|..+|...+++++|..+++.+.+.
T Consensus 319 ~~~-~~~~P~y~~~a~adayl~~~~P~kA~~-l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 319 EAE-GYKMPDYARRWAASAYIDRRLPEKAAP-ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred hhc-CCCCCHHHHHHHHHHHHhcCCcHHHHH-HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 874 544334466778888888888888888 7777766431 223444567788888888888888888887763
Q ss_pred cC-----------CCCh--hh-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015370 329 KQ-----------KMTS--RN-YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 394 (408)
Q Consensus 329 ~~-----------~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 394 (408)
-. .||+ .. +..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 21 1222 12 3345666777888888888888887754 4577777778888888888888888886
Q ss_pred HHHhcCCCCCC
Q 015370 395 LLLQKNCAPTN 405 (408)
Q Consensus 395 ~m~~~g~~p~~ 405 (408)
.... +.|+.
T Consensus 475 ~a~~--l~P~~ 483 (822)
T PRK14574 475 AVES--LAPRS 483 (822)
T ss_pred HHhh--hCCcc
Confidence 6655 35543
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=2.4e-12 Score=128.20 Aligned_cols=319 Identities=11% Similarity=0.005 Sum_probs=236.6
Q ss_pred cHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHhhcC---hHHHHHH
Q 015370 71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT-HKEFVLSDSDYATRIDLMTKVFG---IHSGERY 146 (408)
Q Consensus 71 ~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~ 146 (408)
.+.+.+..|.+. .+-+......+--...+.|+.++|.++|+.... .+.-.++.....-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 344444444443 233666666777777899999999999999876 22223444555577788877765 2333222
Q ss_pred -------------------------HhcCCCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 015370 147 -------------------------FEGLPLS-AK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 198 (408)
Q Consensus 147 -------------------------~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 198 (408)
+...... ++ +...|..+..++.. ++.++|...+.+..... |+......+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 1111111 34 67788888888887 88899999888887763 565444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370 199 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278 (408)
Q Consensus 199 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (408)
...+...|++++|...|+++... .|+...+..+..++.+.|++++|..++++..+. . ++....+..+.....+.|+
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCC
Confidence 55556899999999999998664 344455666778889999999999999999874 2 4444444445555556799
Q ss_pred hhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370 279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 358 (408)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (408)
+++|.. .+.+..+..+ +...|..+...+.+.|++++|+..+++.....+. +...+..+...+...|+.++|+..++
T Consensus 592 ~~eAl~-~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 592 PELALN-DLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHH-HHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999 8888876654 4678889999999999999999999998877432 45567778889999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 359 QWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
+..+.. +-+...+..+..++...|++++|...+++..+ +.|+.
T Consensus 668 ~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 668 RAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 998864 34778899999999999999999999999987 45654
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=1.1e-12 Score=120.60 Aligned_cols=292 Identities=10% Similarity=0.031 Sum_probs=213.9
Q ss_pred HhcccHHHHHHHHHHHHhccCCCCChH-HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH--HHHHHHHHHHHcCCCHHH
Q 015370 99 RKSQRYKHALEISEWMVTHKEFVLSDS-DYATRIDLMTKVFGIHSGERYFEGLPLSAKTS--ETYTALLHLYAGAKWTEK 175 (408)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 175 (408)
...|+++.|.+.+....+. .|++. .+-....+....|+.+.|.+++.+..+..|+. ...-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4579999999999887764 45544 34445678888999999999999976654554 344445888899999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHH
Q 015370 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC---AATLNIDQVKKFLDE 252 (408)
Q Consensus 176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~ 252 (408)
|.+.++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.++.+.......-..++ ...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999986 5577889999999999999999999999999987653332212222222 222333333344444
Q ss_pred HhcCC--CCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH-HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 253 MSCDS--GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 253 ~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
+.+.. ..+.+...+..+...+...|+.++|.+ ++.+..+..+......+ ..........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~-~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE-IIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 44421 122478889999999999999999999 88888876554332221 22222234457888899998877765
Q ss_pred CCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 330 QKMTSR---NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 330 ~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.|+.. ...++...+.+.|++++|.+.|+...... ..|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45444 45578899999999999999999533322 368888888999999999999999999998644
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=9.6e-14 Score=125.72 Aligned_cols=286 Identities=15% Similarity=0.090 Sum_probs=225.2
Q ss_pred cHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC----CCHHHHHHHHHHHHcCCCHHHHHH
Q 015370 103 RYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEE 178 (408)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~ 178 (408)
+..+|+.+|+.+.++ +.-+.+....+..+|...+++++|+++|+.+.... .+.+.|.+.+.-+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 577899999996665 34555777888899999999999999999988774 4788999998766542 2333
Q ss_pred HHH-HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370 179 LFE-RVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 179 ~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 256 (408)
.+. ++.+.. +-.+.+|.++.+.|.-+++.+.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+.....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 332 333332 446789999999999999999999999999984 45 6789999998899999999999999998763
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh
Q 015370 257 SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 336 (408)
Q Consensus 257 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 336 (408)
.+-+...|--+...|.+.++++.|.- .|++..+-.+. +.+....+...+.+.|+.++|++++++......+ |+..
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~-~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEF-HFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHH-HHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 23344455568888999999999999 88877766555 6777778888899999999999999987765443 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 015370 337 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 404 (408)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 404 (408)
----+..+...+++++|+..++++++. .+.+...|-.+...|.+.|+.+.|+.-|--+.+.+-++.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 333455666789999999999999984 345677888899999999999999998888877554443
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=2.7e-15 Score=131.03 Aligned_cols=261 Identities=15% Similarity=0.078 Sum_probs=112.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcC
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGA 170 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 170 (408)
.+...+.+.|++++|++++....... .+| ++..|..+.......++++.|.+.++++...++ +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 56788889999999999996654431 134 445555666777889999999999999987743 46667777777 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370 171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKF 249 (408)
Q Consensus 171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 249 (408)
+++++|.+++++.-+.. ++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 577788899999999999999999999987543 345777888889999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
+++..+. .|.+......++..+...|+.+++.+ ++....+.. +.|...|..+..+|...|+.++|+..|++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEARE-ALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHH-HHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999983 45567888899999999999999988 777776665 4466788899999999999999999999987764
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
. .|+.....+.+++.+.|+.++|.++.++..+
T Consensus 245 p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 P-DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-T-HHHHHHHHHHHT-----------------
T ss_pred c-ccccccccccccccccccccccccccccccc
Confidence 2 2677778899999999999999999887643
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4.3e-12 Score=108.56 Aligned_cols=291 Identities=11% Similarity=0.050 Sum_probs=236.7
Q ss_pred cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCCHHHHHHHHHHHHcCCCHHHHHH
Q 015370 101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEE 178 (408)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~ 178 (408)
.|+|.+|.++..+-.+.+ .-....|..-..+.-..|+.+.+-.++.+..+. +++...+-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 589999999999988876 334566777778889999999999999999887 4567778888899999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 015370 179 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLD 251 (408)
Q Consensus 179 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~ 251 (408)
-++++.+.+ +-++........+|.+.|++.....++..|.+.|.--|. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999886 557889999999999999999999999999999876554 467777777777777777777888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 015370 252 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 331 (408)
Q Consensus 252 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (408)
..... ...++..-.+++.-+.+.|+.++|.+ +.++..+....|+ -.....+.+.++...-++..+.-.+...
T Consensus 254 ~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~-~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~- 325 (400)
T COG3071 254 NQPRK--LRNDPELVVAYAERLIRLGDHDEAQE-IIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP- 325 (400)
T ss_pred hccHH--hhcChhHHHHHHHHHHHcCChHHHHH-HHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-
Confidence 77763 45566667799999999999999999 7777777766655 1223345667787777777776444322
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 332 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
-++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....-..|+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 1346778899999999999999999998776 4689999999999999999999999999998766555554
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=7.8e-12 Score=122.10 Aligned_cols=329 Identities=9% Similarity=-0.009 Sum_probs=233.7
Q ss_pred CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370 67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY 146 (408)
Q Consensus 67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 146 (408)
.+...|.+.|++..+....-....+ .++..+...|+.++|+..+++.... -.........+...+...|++++|+++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4446778888877765322112333 8888899999999999999998732 123334444446688888999999999
Q ss_pred HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370 147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 225 (408)
Q Consensus 147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 225 (408)
|+++....| |...+..++..+...++.++|++.++++.... |+...+-.++..+...++..+|++.++++.+....
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~- 201 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT- 201 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-
Confidence 999988754 57778888999999999999999999998874 56566644444444566776799999999987432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH------------------------------------------------HHHHHHhcCC
Q 015370 226 DIFTYNLWISSCAATLNIDQVK------------------------------------------------KFLDEMSCDS 257 (408)
Q Consensus 226 ~~~~~~~ll~~~~~~g~~~~a~------------------------------------------------~~~~~~~~~~ 257 (408)
+...+..+..++.+.|-...|. .-++.+....
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 4555666666666665433333 2333333322
Q ss_pred CCCCCH-HHH----HHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC--
Q 015370 258 GGSDDW-VKY----VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-- 330 (408)
Q Consensus 258 ~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-- 330 (408)
+..|.. ..| .=.+-++.+.+++.++++ .++.+...+.+....+-..+.++|...+++++|+.+|+.+.....
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~-~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIK-EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 222221 111 124456788899999999 899998877654455777899999999999999999999866431
Q ss_pred ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------------CCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 015370 331 ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT------------SDFDI-SACNRLLGAFSDVGLTEKANEFHM 394 (408)
Q Consensus 331 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 394 (408)
.++......|.-+|...+++++|..+++++.+... ..||- ..+..++..+.-.|+..+|.+.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22333356799999999999999999999987321 12233 234556777889999999999999
Q ss_pred HHHhcCCCCC
Q 015370 395 LLLQKNCAPT 404 (408)
Q Consensus 395 ~m~~~g~~p~ 404 (408)
++.. ..|.
T Consensus 441 ~l~~--~aP~ 448 (822)
T PRK14574 441 DLSS--TAPA 448 (822)
T ss_pred HHHH--hCCC
Confidence 9976 4443
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=5.2e-12 Score=105.04 Aligned_cols=289 Identities=12% Similarity=0.085 Sum_probs=227.0
Q ss_pred cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC------HHHHHHHHHHHHcCCCHH
Q 015370 101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT------SETYTALLHLYAGAKWTE 174 (408)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~ 174 (408)
.++.++|.++|-+|.+.. +.+..+.-+|.+.+-+.|..|.|+++.+.+..+ || ....-.|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 467899999999999854 455667778899999999999999999988775 43 445667788899999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 015370 175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 175 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
.|+.+|..+.+.+. --..+...|+..|-...+|++|.++-+++...+-++.. ..|.-+...+....+.+.|...+
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998652 23568889999999999999999999999887665543 34555666667788999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370 251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ 330 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 330 (408)
++..+. .+-.+..--.+.+.+...|+++.|.+ .++.+.+..+.--..+...|..+|...|+.++....+.++.+...
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 998873 23445555577888999999999999 999999888776677888999999999999999999998887644
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCC
Q 015370 331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~ 401 (408)
.++ .-..+-+......-.+.|..++.+-... +|+...+..|+..-.. .|...+-+..++.|+..-+
T Consensus 281 g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 281 GAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred Ccc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 443 4444555555556677777777766653 6899999999987765 3556777778888875533
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=2.8e-12 Score=127.73 Aligned_cols=263 Identities=10% Similarity=-0.054 Sum_probs=195.7
Q ss_pred ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370 87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL 166 (408)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~ 166 (408)
+...|..+..++.. +++.+|+..+.+.... .|+......+...+...|++++|...|+++....|+...+..+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56677777777766 7888898888877764 4665544444555568899999999998876665666667777788
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015370 167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 246 (408)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 246 (408)
+.+.|+.++|...+++..+.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 888999999999999888765 333334444444455669999999999988874 45677888888889999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 326 (408)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 326 (408)
+..+++.... .+.+...++.+...+...|+.++|+. .+....+..+. +...+..+..++...|++++|+..+++..
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~-~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE-MLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999988873 45677778888888999999999999 88877776543 66778888888999999999999998877
Q ss_pred hccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 327 MTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 327 ~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
+. .|+. ...-.......+..+++.|.+-+.+...
T Consensus 705 ~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 705 DD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 65 3443 2333445555566667777776666543
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=6.2e-12 Score=115.07 Aligned_cols=281 Identities=10% Similarity=-0.012 Sum_probs=213.2
Q ss_pred CCCCcHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHH--HHHHHHHhhcChHHH
Q 015370 67 LPKRSATNVIQRWVSEGNQATVSE-LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYA--TRIDLMTKVFGIHSG 143 (408)
Q Consensus 67 ~~~~~a~~~l~~~~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 143 (408)
.+.+.|.+.+..-.+.. +++.. |........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 34445555544433322 22233 333345558899999999999999874 56654333 346788999999999
Q ss_pred HHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 015370 144 ERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-------LMYNEMMTLYMSVGQVEKVALVV 215 (408)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~ 215 (408)
.+.++++....| +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999888754 6888999999999999999999999999988754322 23344444444555667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295 (408)
Q Consensus 216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (408)
+.+.+. .+.+......+...+...|+.++|..++++..+. +++... .++.+....++.+++.+ ..+...+..+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~-~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEK-VLRQQIKQHG 325 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHH-HHHHHHhhCC
Confidence 776543 3447778888999999999999999999998873 445532 34455556699999999 8888776655
Q ss_pred cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
. |...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 6677888999999999999999999998875 68999999999999999999999999998654
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=1.8e-11 Score=112.61 Aligned_cols=285 Identities=10% Similarity=0.009 Sum_probs=204.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChH--HHHHHHHHHHhhcChHHHH
Q 015370 68 PKRSATNVIQRWVSEGNQATV-SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDS--DYATRIDLMTKVFGIHSGE 144 (408)
Q Consensus 68 ~~~~a~~~l~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~ 144 (408)
+...|.+.+....+. .|+. ..+-.......+.|+++.|.+.+.+..+. .|+.. ..-.....+...|+++.|.
T Consensus 99 ~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 99 DYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 445666666655443 3443 33445567778889999999999998764 35543 3444578888999999999
Q ss_pred HHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 015370 145 RYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN-EMMTLY---MSVGQVEKVALVVEEIK 219 (408)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~ 219 (408)
+.++.+.+..| +..++..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..++..+.+..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999988755 6788999999999999999999999999998754 333332 222222 33333333444555555
Q ss_pred hCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHcCchhhhHHHHHHHHHHhc
Q 015370 220 RKNV---VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIYITASHLVNAESSTLVEAEKSI 294 (408)
Q Consensus 220 ~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 294 (408)
.... +.+...+..+...+...|+.++|.+++++..+.. +++... ...........++.+.+.+ .++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~-~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK-LIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH-HHHHHHHhC
Confidence 4322 1377888889999999999999999999998842 222211 1122222334567777877 666665543
Q ss_pred ccCcc--chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 295 TQRQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 295 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 44 566788999999999999999999655555578998899999999999999999999998643
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.3e-11 Score=105.94 Aligned_cols=289 Identities=13% Similarity=0.066 Sum_probs=204.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC----CHHHHHHHHHHHHcC
Q 015370 95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----TSETYTALLHLYAGA 170 (408)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~ll~~~~~~ 170 (408)
..++......+++++-.+...+.| ++-+...-+....+.-...+++.|+.+|+++.+..| |..+|+.++-.-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555567777777777777776 544444444444555677889999999999888744 678888877554433
Q ss_pred CCHHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370 171 KWTEK-AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 249 (408)
Q Consensus 171 ~~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 249 (408)
..+.- |..+++ + ... -+.|+.++.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-
T Consensus 313 skLs~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 33221 222221 1 112 3568888888888888899999999888886543 567788888888888888899999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
++...+ -.|.|-..|-.|..+|.-.+...=|+- .+++...-. +.|...|.+|..+|.+.++.++|+..|.+....|
T Consensus 387 YRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLy-YfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALY-YFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHH-HHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 988887 456788888889999988888888888 777665543 3478889999999999999999999988877766
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 015370 330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDI-SACNRLLGAFSDVGLTEKANEFHML 395 (408)
Q Consensus 330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~ 395 (408)
..+...+..|.+.|-+.++.++|...|.+.++ .|...|.. ...--|..-+.+.+++++|..+...
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34667788888888888999998888887665 23233321 2222255556666777666554433
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4.6e-12 Score=115.05 Aligned_cols=281 Identities=13% Similarity=0.038 Sum_probs=219.9
Q ss_pred CCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChH-HHHHH
Q 015370 69 KRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIH-SGERY 146 (408)
Q Consensus 69 ~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~-~a~~~ 146 (408)
.+.|...|.. .-..+.-+..+...+.++|...+++++|.++|+.+.+..+... +..+|.+.+--+-+.-... -|..+
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3567777777 3333555667888899999999999999999999988653332 4678888775443322221 22333
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015370 147 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD 226 (408)
Q Consensus 147 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 226 (408)
.+..+ ....+|.++.++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..... |
T Consensus 414 i~~~~---~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~ 485 (638)
T KOG1126|consen 414 IDTDP---NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----D 485 (638)
T ss_pred HhhCC---CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----C
Confidence 33332 468999999999999999999999999999876 336789999988899999999999999988763 4
Q ss_pred HHHHH---HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH
Q 015370 227 IFTYN---LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 303 (408)
Q Consensus 227 ~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 303 (408)
...|+ -+...|.+.++++.|+-.|++..+- -+-+.+....+...+.+.|+.++|++ ++++...-.+. |..+--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~-~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQ-LYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHH-HHHHHHhcCCC-CchhHH
Confidence 44454 4566899999999999999999873 45566777888899999999999999 88888766554 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
..+..+...+++++|++.++++++. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6777788899999999999999886 554 4557788999999999999999998887643
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.6e-11 Score=102.43 Aligned_cols=300 Identities=13% Similarity=0.037 Sum_probs=195.9
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHH-HH
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETY-TA 162 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~ 162 (408)
...|..-+......+.+.|..+.|.+.|......- +..|.+.+....-..+.+.+..+...+... +...- --
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~lit~~e~~~~l~~~l~~~--~h~M~~~F 232 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSELITDIEILSILVVGLPSD--MHWMKKFF 232 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHHhhchHHHHHHHHhcCccc--chHHHHHH
Confidence 33444444444445566677777777777665532 233333333322222333332222222210 10000 11
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------
Q 015370 163 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV------------------- 223 (408)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------- 223 (408)
+..++....+.+++.+-.+.....|++-+...-+-...+.....++|+|+.+|+++.+...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 1233333344455555555555555443333333333333444455555555555544311
Q ss_pred --------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Q 015370 224 --------------VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 289 (408)
Q Consensus 224 --------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 289 (408)
+--..|+.++.+-|+-.++.++|..+|+...+- .+-....|+.+.+-|...++...|.+ -++.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~-sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE-SYRR 389 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH-HHHH
Confidence 011234555556666777899999999999883 34566779999999999999999999 8888
Q ss_pred HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 015370 290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 368 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 368 (408)
..+-.+. |-..|-.|.++|.-.+.+.=|+-.|++.... +| |...|.+|.++|.+.++.++|+..|.+....+ ..
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dt 464 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DT 464 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--cc
Confidence 8766544 8899999999999999999999999987765 44 78899999999999999999999999999876 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 369 DISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+...+..|.+.|-+.++.++|...|++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667889999999999999999999988765
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=8.4e-11 Score=110.35 Aligned_cols=305 Identities=15% Similarity=0.127 Sum_probs=188.9
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHH
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLY 167 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~ 167 (408)
...-...+.+...|+.++|.+++.++.+.. +.....|-+|...|-..|+.+++...+-..... +.|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334444555556699999999999998874 667788999999999999999888765543333 35678899999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCH
Q 015370 168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN----LWISSCAATLNI 243 (408)
Q Consensus 168 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~ 243 (408)
.+.|++++|.-+|.+.++.. +++...+--=...|-+.|+...|..-|.++.......|..-+. ..+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999988886 5566666666778888999999999998888764422333233 334456666777
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc----------------------Cccch
Q 015370 244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ----------------------RQWIT 301 (408)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~~ 301 (408)
+.|.+.++......+-..+...++.++..|.+...++.|.. ....+...... ++...
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~-~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALM-KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhH-HHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 88888887766644555666677888888888888888877 44444331111 11111
Q ss_pred HH----HHHHHHHhcCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370 302 YD----FLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 375 (408)
Q Consensus 302 ~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 375 (408)
|+ .++-++.+....+....+...+......| +...|.-+.++|...|++.+|+.+|..+..... -.+...|-.
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAFVWYK 454 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchhhhHH
Confidence 11 12222233333333333333333333222 222344455555555555555555555544322 123444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 015370 376 LLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 376 li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+..+|...|.+++|.+.|+..+.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 55555555555555555555544
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=2.1e-10 Score=107.78 Aligned_cols=325 Identities=12% Similarity=0.042 Sum_probs=246.0
Q ss_pred cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370 66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER 145 (408)
Q Consensus 66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 145 (408)
+.+...|..++.+.++. .+.....|.+|...|-..|+.++++..+-..-.. .+-|...|..+.....+.|+++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 35668899999999887 4667888999999999999999998877666554 35567899999999999999999999
Q ss_pred HHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 146 YFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN----EMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 146 ~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
.|.+..+. +++...+---...|-+.|+...|...|.++....-+.|..-+. .++..+...++-+.|.+.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998776 4566666667788999999999999999999875323333333 345556677777999999988776
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--------------------------CCCCCCHHHHHHHHHHH
Q 015370 221 KN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD--------------------------SGGSDDWVKYVNLVNIY 273 (408)
Q Consensus 221 ~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~~~li~~~ 273 (408)
.+ -..+...+++++..+.+...++.+......+... .+..++..+ .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 32 2235567788888888999999998888777651 011222222 1233334
Q ss_pred HHcCchhhhHHHHHHHHHHhc--ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 015370 274 ITASHLVNAESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 351 (408)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 351 (408)
...+..+.... ++....+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|--+..+|...|..+
T Consensus 388 ~~L~~~e~~e~-ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEA-LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHH-HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 44444444444 444454544 444567888899999999999999999999887755556778889999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 352 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
+|.+.|+...... +-+...--+|...+.+.|++++|.+++..+.
T Consensus 467 ~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999865 2344555668888999999999999999876
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=5e-11 Score=101.11 Aligned_cols=198 Identities=16% Similarity=0.028 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 236 (408)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4556666666666667777776666666543 334556666666666666666666666666654322 34455555556
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370 237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 316 (408)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 316 (408)
+...|++++|.+.+++.......+.....+..+...+...|++++|.. .+.+.....+. +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK-YLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 666666666666666655421112223334444444555555555555 44444333221 2233334444444444444
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
+|...+++..... ..+...+..+...+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444443331 11222333333344444444444444433
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=2.9e-12 Score=119.54 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 015370 332 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 408 (408)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 408 (408)
|++.+|..++++-...|+.+.|..++.+|++.| ++.+..-|-.|+-+ .++...+..+++-|.+.|+.|++.||
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 455555555555555555555555555555554 22233222233322 44444455555555555555555543
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.5e-13 Score=85.24 Aligned_cols=49 Identities=27% Similarity=0.587 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015370 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 238 (408)
Q Consensus 190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 238 (408)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=1.5e-10 Score=110.62 Aligned_cols=266 Identities=9% Similarity=-0.020 Sum_probs=164.3
Q ss_pred ChHHHHHHHHHHHh-----hcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHH---------cCCCHHHHHHHHHHHHhCC
Q 015370 123 SDSDYATRIDLMTK-----VFGIHSGERYFEGLPLSAKT-SETYTALLHLYA---------GAKWTEKAEELFERVKQSN 187 (408)
Q Consensus 123 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~A~~~~~~m~~~~ 187 (408)
+...|...+.+... .+++++|..+|++.....|+ ...|..+..++. ..+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 34445555544322 23456777888877666443 555655555443 2244778888888888775
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 015370 188 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 267 (408)
Q Consensus 188 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (408)
+-+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 446777777777888888888888888888775432 45566777777888888888888888887742 22222333
Q ss_pred HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh-HHHHHHHHHh
Q 015370 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLM 346 (408)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 346 (408)
.++..+...|++++|.. .+.+.....++.+...+..+...+...|+.++|.+.+.++... .|+... .+.+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~-~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIR-LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHH-HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 34445666778888888 7776655543334445666777777888888888888776544 333322 3344455566
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370 347 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 400 (408)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 400 (408)
.| ++|...++.+.+.....+....+. -..+.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLL--PLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHH--HHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 477777777665432333333333 3334445555555544 6666554
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.7e-10 Score=95.03 Aligned_cols=253 Identities=13% Similarity=0.062 Sum_probs=195.7
Q ss_pred hcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHH
Q 015370 137 VFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA------LMYNEMMTLYMSVGQVE 209 (408)
Q Consensus 137 ~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~ 209 (408)
..+.++|..+|-+|.+.. .+..+.-+|.+.|-+.|++|.|+++.+.+.++ ||. .+...|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 468899999999988763 45677788999999999999999999998875 332 23456677788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHcCchhhhHHHH
Q 015370 210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESST 286 (408)
Q Consensus 210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~ 286 (408)
.|+.+|..+.+.|.- -.....-|+..|-...++++|+++-+++.+..+-+.+. ..|.-|...+....+.+.|.. +
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~-~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE-L 202 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH-H
Confidence 999999999986532 45677888999999999999999999888743332222 236778888888899999999 8
Q ss_pred HHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 015370 287 LVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS 366 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 366 (408)
+.+..+..++ ++..--.+.+.....|+++.|.+.|+...+.+..--......|..+|.+.|+.++....+.++.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 8888777655 5555556778889999999999999999988665556677889999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 367 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
++...-..|...-....-.+.|..++.+-+.
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 3444444455544444455666665555443
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=1.8e-10 Score=110.04 Aligned_cols=267 Identities=10% Similarity=-0.009 Sum_probs=189.6
Q ss_pred CChhhHHHHHHHHHh-----cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh---------hcChHHHHHHHhcCC
Q 015370 86 ATVSELRHILKELRK-----SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTK---------VFGIHSGERYFEGLP 151 (408)
Q Consensus 86 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 151 (408)
.+...|...+++... .+.+++|+++|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556666665422 245779999999999853 3334566655554442 234789999999887
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370 152 LSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY 230 (408)
Q Consensus 152 ~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 230 (408)
...| +...+..+...+...|++++|...|++..+.+ |.+...|..+...+...|++++|...+++..+.... +...+
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7644 68889999999999999999999999999886 556778999999999999999999999999986543 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370 231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 310 (408)
Q Consensus 231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 310 (408)
..++..+...|++++|...++++... ..+.+...+..+..++...|+.++|.. .+.++.... +.+....+.+...|.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~-~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARK-LTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHH-HHHHhhhcc-chhHHHHHHHHHHHh
Confidence 34455567789999999999998763 223355567888899999999999999 777764442 224455566666777
Q ss_pred hcCCHHHHHHHHHHHHhcc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 311 GLGNKDKIDQIWKSLRMTK-QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
..| ++|...++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777665432 22322223 33444556777777766 7776644
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=2.3e-13 Score=84.37 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 204 (408)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 204 (408)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.2e-10 Score=98.87 Aligned_cols=196 Identities=15% Similarity=0.076 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 204 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 204 (408)
.+..+...+...|++++|.+.+++..... .+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 33334444444444444444444433221 223444444455555555555555555544432 2233444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370 205 VGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283 (408)
Q Consensus 205 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (408)
.|++++|.+.+++.......| ....+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555554422111 2233444444555555555555555555442 2223444555555555555555555
Q ss_pred HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 326 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 326 (408)
. .+++.... .+.+...+..+...+...|+.++|..+++.+.
T Consensus 190 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 A-YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred H-HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5 55544443 22233444444555555555565555555443
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.4e-09 Score=103.17 Aligned_cols=324 Identities=13% Similarity=0.104 Sum_probs=231.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHH----hccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMV----THKEFVLSDSDYATRIDLMTKVFGIHSGERYF 147 (408)
Q Consensus 72 a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 147 (408)
|..++.+..+. .+.|...|-.+...+-.. +...++.+|.... ..+ -.+.+...|.+.......|+++.|...|
T Consensus 399 a~~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 399 ASNVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 34444443333 355677777666666544 4444466666543 344 3477888899999999999999999988
Q ss_pred hcCCCC-----CCC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370 148 EGLPLS-----AKT------SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 216 (408)
Q Consensus 148 ~~~~~~-----~~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 216 (408)
...... .+| +.+--.+...+-..++.+.|.+.|..+.... |-=+..|--++......+...+|...+.
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLK 554 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence 875543 122 2234445666677788999999999988764 2234455555544445677888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH------------cCchhhhHH
Q 015370 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT------------ASHLVNAES 284 (408)
Q Consensus 217 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~~~~~~a~~ 284 (408)
...... ..+...++.+...+.+..++..|.+-|....+.....+|..+..+|.+.|.+ .+..++|++
T Consensus 555 ~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 555 DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 877643 2355666667778888888888888666665544444677776677775543 334667777
Q ss_pred HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 285 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
++..+.+..+. |...-|.+...++..|++.+|..+|...++... -+..+|..+.++|..+|++..|++.|+...++.
T Consensus 634 -~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 634 -LYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred -HHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777666544 777778888889999999999999999988764 255678889999999999999999999988766
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 365 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 365 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
....+....+.|.+++.+.|.+.+|.+.+..... ..|..
T Consensus 711 ~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~ 749 (1018)
T KOG2002|consen 711 YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN 749 (1018)
T ss_pred cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence 5566778888899999999999999998887766 45544
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=7.1e-10 Score=96.60 Aligned_cols=278 Identities=11% Similarity=0.062 Sum_probs=201.4
Q ss_pred HHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH--HHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCH
Q 015370 97 ELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR--IDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWT 173 (408)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~ 173 (408)
.+.+.|+++.|++++.-..+.. -+.-...-+.| +..+.--.++..|.++-+..... .-|....+.-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4678899999999998887665 22222222222 22222234577777766554432 12333333333445567999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253 (408)
Q Consensus 174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 253 (408)
++|.+.|.+.+..+-.- ....-.+.-.+-..|++++|+..|-.+-.- +.-+.....-+.+.|-...++.+|++++-+.
T Consensus 507 dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999875221 223333444567889999999999776542 2235666777888899999999999999888
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 015370 254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 333 (408)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 333 (408)
.. -++.|+.+.+.|...|-+.|+-..|.+ ...+-..- .+-+..+..-|..-|....-+++++.+|++..- +.|+
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq-~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQ-CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhh-hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 76 578899999999999999999999998 54443333 344777777788889999999999999996543 5899
Q ss_pred hhhHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370 334 SRNYICILSSY-LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 385 (408)
Q Consensus 334 ~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 385 (408)
..-|..+|..| .+.|++.+|.+++++..++ ++.|..+..-|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence 99999877655 5789999999999998876 46788888889998888774
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.1e-09 Score=103.81 Aligned_cols=322 Identities=12% Similarity=0.055 Sum_probs=242.6
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhcc--CCCCChH------HHHHHHHHHHhhcChHHHHHH
Q 015370 75 VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHK--EFVLSDS------DYATRIDLMTKVFGIHSGERY 146 (408)
Q Consensus 75 ~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~------~~~~li~~~~~~g~~~~a~~~ 146 (408)
.++.|...+..+.++..|.+...+...|++..|...|......- ...++.. +--.+...+-..++++.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 34456678888999999999999999999999999999987651 0123331 111234555677899999999
Q ss_pred HhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 015370 147 FEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VV 224 (408)
Q Consensus 147 ~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~ 224 (408)
|..+....|+ +..|--++......++..+|...+....+.+ ..++..++.+...+.+...+..|.+-|....+.- ..
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 9999887665 5556666545555678899999999988765 5577888888989999999999999777766542 23
Q ss_pred CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 225 PDIFTYNLWISSCAA------------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 225 p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
+|.++.-.|.+.|.. .+..++|+++|.++.+. .+-+...-|-+.-.++..|++.+|.. +|..+.+
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~d-IFsqVrE 674 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARD-IFSQVRE 674 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHH-HHHHHHH
Confidence 577777777775543 23578899999998883 45677777888889999999999999 9998887
Q ss_pred hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH
Q 015370 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 371 (408)
Q Consensus 293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 371 (408)
.... +..+|-.+.++|...|++..|+++|+...+. ...-+......|.+++.+.|.+.+|.+.+.......... ...
T Consensus 675 a~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~-~~v 752 (1018)
T KOG2002|consen 675 ATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN-TSV 752 (1018)
T ss_pred HHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc-chH
Confidence 7653 5668889999999999999999999975544 434466778889999999999999999999888765332 234
Q ss_pred HHHHHHHHH------------------HhcCChHHHHHHHHHHHhcCCC
Q 015370 372 ACNRLLGAF------------------SDVGLTEKANEFHMLLLQKNCA 402 (408)
Q Consensus 372 ~~~~li~~~------------------~~~g~~~~a~~~~~~m~~~g~~ 402 (408)
.||..+... ...+..+.|.++|.+|...+-.
T Consensus 753 ~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455443222 1234567788888888776543
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=6.4e-11 Score=98.79 Aligned_cols=231 Identities=9% Similarity=0.019 Sum_probs=152.0
Q ss_pred HHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 015370 127 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 206 (408)
Q Consensus 127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 206 (408)
-+.+..+|.+.|.+.+|.+.|+.-....|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-|+.-..-+.+.+-..+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 345566777777777777777766655566677777777777777777777777776665 3444444455666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHH
Q 015370 207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESST 286 (408)
Q Consensus 207 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 286 (408)
+.++|.++|+...+... .++....++...|.-.++++-|..+++++.+ .|+ -++..|+.+..+|.-.++++-++. -
T Consensus 305 ~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~-s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLP-S 380 (478)
T ss_pred hHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHH-H
Confidence 77777777777665432 2555555666666667777777777777776 354 356667777777777777777776 6
Q ss_pred HHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 287 LVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 287 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
+.+.......|+ ...|-.|.......|++..|.+.|+-....+.. ....++.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 666665554443 245666666666777777777777765554322 4456666666667777777777777776553
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.6e-09 Score=94.74 Aligned_cols=284 Identities=14% Similarity=0.054 Sum_probs=220.0
Q ss_pred CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHH
Q 015370 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTAL 163 (408)
Q Consensus 85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l 163 (408)
.-+......-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++...- ....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 3445555566677778899999999999999875 6677777777778888888766655555555553 468899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhc
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--N-VVPDIFTYNLWISSCAAT 240 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g-~~p~~~~~~~ll~~~~~~ 240 (408)
.-.|...|..++|.+.|.+....+ +.=...|-.....|+-.|..|+|...|...-+. | ..|.. | +.--|.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t 393 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRT 393 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHh
Confidence 988988999999999999877654 112468999999999999999999988766542 2 22322 2 34457788
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC------ccchHHHHHHHHHhcCC
Q 015370 241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR------QWITYDFLIILYAGLGN 314 (408)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~ 314 (408)
++++.|.++|.+... ..|.|+.+.+-+.-.....+.+.+|.. .|.......... -..+++.|..+|.+.+.
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALK-YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHH-HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 999999999999987 467788888888888888999999999 777766322211 23468899999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370 315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 382 (408)
Q Consensus 315 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (408)
+++|+..+++...... -+..++.++.-.|...|+++.|.+.|++..- +.|+-.+-..++..+..
T Consensus 471 ~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHHHHHH
Confidence 9999999998777643 3788899999999999999999999999774 46776666666665543
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=2.8e-08 Score=90.64 Aligned_cols=299 Identities=12% Similarity=0.034 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH
Q 015370 88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL 166 (408)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~ 166 (408)
...|......=-..|..++...+|++.... ++-....|-....-+-..|++..|..++.+..... .+...|-+-+..
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL 627 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 334444444444444455555555555443 22223333333344444455555555544443332 234445555555
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 015370 167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNIDQ 245 (408)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 245 (408)
-..+.+++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. -|+- -.|-.+...+-+.++++.
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHH
Confidence 55555555555555544443 234444444444444444555555555444442 2232 233333444444455555
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 325 (408)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 325 (408)
|.+.|..=.+ .++..+-.|..|...--+.|.+-.|.. ++++....++. +...|-..|.+-.+.|+.+.|..+..+.
T Consensus 704 aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~-ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 704 AREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARS-ILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHH-HHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544444333 233334444444444444445555554 44444333322 4444444455545555555444444332
Q ss_pred Hhc-----------------------------cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370 326 RMT-----------------------------KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 376 (408)
Q Consensus 326 ~~~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 376 (408)
.+. .+.-|+.....+...+-...++++|.+.|.+.++.+ +.+-.+|.-+
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~f 857 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWF 857 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHH
Confidence 211 123355556667777888889999999999999865 3355678878
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 015370 377 LGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 377 i~~~~~~g~~~~a~~~~~~m~~ 398 (408)
...+.+.|.-++-.++++....
T Consensus 858 ykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999998888999988876
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=4.8e-09 Score=92.40 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=102.9
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370 237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 316 (408)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 316 (408)
+.-.+++++|..=|++.+. --+.+...|..+.-+..+.++++++.. .|++..++.+. ....|+.....+...++++
T Consensus 404 ~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPN-CPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHhhHHhHH
Confidence 3333445555555555544 123344555566666677778888888 88887777654 6778888888888899999
Q ss_pred HHHHHHHHHHhccCC-----CChhhHH--HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015370 317 KIDQIWKSLRMTKQK-----MTSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389 (408)
Q Consensus 317 ~a~~~~~~m~~~~~~-----p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 389 (408)
.|.+.|+...+.... .+..++. .++- +--.+++..|..++++.++.. +.....|.+|...-.+.|+.++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHH
Confidence 999988876554221 1122211 1111 123488889999999888743 33556788899999999999999
Q ss_pred HHHHHHHH
Q 015370 390 NEFHMLLL 397 (408)
Q Consensus 390 ~~~~~~m~ 397 (408)
+++|++..
T Consensus 557 ielFEksa 564 (606)
T KOG0547|consen 557 IELFEKSA 564 (606)
T ss_pred HHHHHHHH
Confidence 99998754
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=6.2e-09 Score=96.62 Aligned_cols=295 Identities=13% Similarity=0.035 Sum_probs=199.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH-c--
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA-G-- 169 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~-~-- 169 (408)
-....+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+...+|+-..|-..+..+. -
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 3445667889999999999886654 3334555667778899999999999999999888776655554444433 2
Q ss_pred ---CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370 170 ---AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 245 (408)
Q Consensus 170 ---~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 245 (408)
..+.+...++|+++...- |...+...+.-.+..-..+ ..+..++..+..+|++ .+|+.+-..|....+.+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 235777888888887653 4444443333333322233 3455566777788875 356666666665555555
Q ss_pred HHHHHHHHhcCC-------------CCCCCHH--HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370 246 VKKFLDEMSCDS-------------GGSDDWV--KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 310 (408)
Q Consensus 246 a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 310 (408)
..+++....... .-+|+.. ++.-+...|-..|++++|++ .++...+..+. .+..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-YIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555555543210 1234443 34566778889999999999 88877776533 4667777888889
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--CHH----HH--HHHHHHHHh
Q 015370 311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DIS----AC--NRLLGAFSD 382 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~----~~--~~li~~~~~ 382 (408)
+.|++++|.+.++..+..... |...-+-.+..+.+.|++++|.+++....+.+. .| |.. .| .....+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776532 555555678888899999999999998876652 23 222 22 445678889
Q ss_pred cCChHHHHHHHHHHHh
Q 015370 383 VGLTEKANEFHMLLLQ 398 (408)
Q Consensus 383 ~g~~~~a~~~~~~m~~ 398 (408)
.|++..|+.-|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999877665543
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=6.5e-10 Score=104.21 Aligned_cols=253 Identities=11% Similarity=0.085 Sum_probs=183.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC
Q 015370 74 NVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS 153 (408)
Q Consensus 74 ~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 153 (408)
.++-.+...|+.|+..||.++|.-|+..|+.+.|- +|.-|.-.. .+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 45666888999999999999999999999999998 999998775 6778889999999888888887665
Q ss_pred CCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHH----hCCCCCChhhH---------------HHHHHHHHhcCCHHHH
Q 015370 154 AKTSETYTALLHLYAGAKWTEK---AEELFERVK----QSNLSFNALMY---------------NEMMTLYMSVGQVEKV 211 (408)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~---A~~~~~~m~----~~~~~p~~~~~---------------~~li~~~~~~g~~~~a 211 (408)
.|...+|+.|+.+|...|++.. ..+.+..+. ..|+- ....| ...+.-..-.|-++.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999765 222122111 12211 11111 1233334455666666
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 015370 212 ALVVEEIKRKNV-VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 290 (408)
Q Consensus 212 ~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 290 (408)
++++..+..... .|-.+ +++-+... .....++....+.-.+ .|+..+|.+++..-...|+++.|.. ++.+|
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~-ll~em 230 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKN-LLYEM 230 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHH-HHHHH
Confidence 666655543211 11111 24433322 2334444444444212 5899999999999999999999999 99999
Q ss_pred HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370 291 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349 (408)
Q Consensus 291 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (408)
.+.+.+.+...|-.|+.+ .++...+..+++-|++.|+.|+..|+...+..+...|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999988887766677744 88889999999999999999999999988877777555
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=3.1e-08 Score=85.38 Aligned_cols=284 Identities=10% Similarity=-0.024 Sum_probs=217.4
Q ss_pred CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370 68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF 147 (408)
Q Consensus 68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 147 (408)
+...|+..+.+..+.+-.| ...|..-..+.-+.|+.+.+-..+.+..+.. -.++...+-+........|+++.|..-.
T Consensus 99 ~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4456666676666665443 3446666778888899999999999998752 2555667777788889999999999888
Q ss_pred hcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 148 EGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-------LMYNEMMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 148 ~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 219 (408)
+++... +.+..+......+|.+.|++.+...++..|.+.|+--|. .+|+.+++=....+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 887766 457899999999999999999999999999999865443 467777777777777777666776665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCcc
Q 015370 220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299 (408)
Q Consensus 220 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 299 (408)
.+ .+-+...-.+++.-+.+.|+.++|.++.++..++ +..|+. ...-...+-++.+.-.+ ..+.-.+..+. +.
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k-~~e~~l~~h~~-~p 328 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIK-AAEKWLKQHPE-DP 328 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHH-HHHHHHHhCCC-Ch
Confidence 43 3445666777788889999999999999998885 554441 22233455666666666 44444444322 44
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7788999999999999999999996555 4789999999999999999999999999987643
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1e-08 Score=94.18 Aligned_cols=235 Identities=13% Similarity=0.137 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCC--------CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CC
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLS--------AKTSE-TYTALLHLYAGAKWTEKAEELFERVKQS-----N--LS 189 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~--~~ 189 (408)
+...+...|...|+++.|+.+++..... .|.+. ..+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555666666666666555543221 12222 2334667788888888888888877642 2 11
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CC
Q 015370 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVV-PDI-FTYNLWISSCAATLNIDQVKKFLDEMSCDSG--GS 260 (408)
Q Consensus 190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~ 260 (408)
--..+++.|..+|.+.|++++|...++...+ .|.. |.. .-++.+...++..+++++|..+++...+... ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2234677777788888888888777766542 1211 222 2345555666777777777777765443210 11
Q ss_pred ----CCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc-------CccchHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 015370 261 ----DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-------RQWITYDFLIILYAGLGNKDKIDQIWKSLR--- 326 (408)
Q Consensus 261 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--- 326 (408)
.-..+++.|...|.+.|++++|.+ +++.+...... -....++.|...|.+.+.+.+|.++|.+-.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEE-LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 112346666666666666666666 55555443211 012344455555555666666666555422
Q ss_pred -hccC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 327 -MTKQ-KMT-SRNYICILSSYLMLGHLKEVGEIIDQWK 361 (408)
Q Consensus 327 -~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (408)
..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1121 111 1234445555555555555555555443
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=9e-10 Score=92.07 Aligned_cols=233 Identities=11% Similarity=-0.050 Sum_probs=194.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHH
Q 015370 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-NLWISSCA 238 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 238 (408)
-+-+.++|.+.|...+|.+.|+.-+.. .|-+.||-.|-.+|.+..+++.|+.++.+-.+. .|-.+|| .-+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367889999999999999999998876 467889999999999999999999999998875 4555555 45667888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370 239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 318 (408)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 318 (408)
..++.++|.++++...+. .+.++.....+...|.-.+++|.|++ .+.++.+-|.. +...|+.+.-+|.-.+++|-+
T Consensus 302 am~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~Alr-yYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALR-YYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHH-HHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 899999999999999884 45566777778888999999999999 99999988877 778899999999999999999
Q ss_pred HHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370 319 DQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 319 ~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 396 (408)
+--|.+....--.|+. ..|-.+.......||+..|.+.|+-...++ ..+...+|.|.-.-.+.|++++|..+++..
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999887766545544 346667777778899999999999887654 446788999998889999999999999987
Q ss_pred HhcCCCCC
Q 015370 397 LQKNCAPT 404 (408)
Q Consensus 397 ~~~g~~p~ 404 (408)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 76 4444
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.25 E-value=6.6e-08 Score=88.34 Aligned_cols=263 Identities=11% Similarity=0.014 Sum_probs=158.4
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYA 168 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~ 168 (408)
||..-.+.|.+.+.++-|..+|....+. ++-+...|......=-..|..+....+|++....- .....|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 3444444444455555555555555443 23334445444444444555555555555555442 23445555556666
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 248 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 248 (408)
..|++..|..++....+.. +-+...|-.-+..-..+.+++.|..+|.+.... .|+...|.--+..---.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 6677777777777766654 335556777777777777777777777766653 4455555554554455577777777
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
++++..+. ++.-.-.|..+...+-+.++++.|.. .+..-.+ ..+.....|-.|...--+.|.+-+|..++++-+..
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~-aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMARE-AYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHH-HHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 77777763 34444556667777777777777776 4432211 22334556666666666777777888888776666
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 329 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
+++ +...|...|+.=.+.|+.+.|..++.+...
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 543 666777777777788887777777766544
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.9e-08 Score=85.00 Aligned_cols=299 Identities=11% Similarity=-0.000 Sum_probs=215.5
Q ss_pred hhHHHHHHHHHh--cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHH
Q 015370 89 SELRHILKELRK--SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLH 165 (408)
Q Consensus 89 ~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~ 165 (408)
.+....+.+++. .++...+..++-.......++-+......+...+...|+.++|+..|++.....|+ +.......-
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV 274 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence 333444554443 34445555555444443335667788889999999999999999999988776553 333444445
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370 166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 245 (408)
Q Consensus 166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 245 (408)
.+.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++.++.... +...|-.-.+.+...|++++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHH
Confidence 5667888888888888877653 234556666666777889999999999988875432 44455555567788999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHH-HHHH-hcCCHHHHHHHHH
Q 015370 246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI-ILYA-GLGNKDKIDQIWK 323 (408)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~ 323 (408)
|.-.|+.... --|-+...|.-|+++|...|++.+|.- .-....+..+. +..+...+. ..+. ....-++|..+++
T Consensus 353 A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~-~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 353 AVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA-LANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999886 345678899999999999999999998 55555554433 555554442 2222 2334578888888
Q ss_pred HHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 324 SLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 324 ~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.-... .|+. ...+.+...+...|..+++..++++... ..||....+.|.+.+...+.+.+|++.|...+.
T Consensus 429 k~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 429 KSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 65443 4543 2455677788899999999999999886 358999999999999999999999999988776
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=2.1e-07 Score=82.04 Aligned_cols=314 Identities=11% Similarity=0.097 Sum_probs=153.7
Q ss_pred CCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHh
Q 015370 69 KRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFE 148 (408)
Q Consensus 69 ~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 148 (408)
..-|.++|+.|.. ..|+...|.+.|+-=.+.+.++.|..++++..- +.|+..+|......=-++|++..|.++|+
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3445667777765 467777777777777777777777777777765 45777777777776677777777777776
Q ss_pred cCCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH--------
Q 015370 149 GLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALV-------- 214 (408)
Q Consensus 149 ~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~-------- 214 (408)
.....- .+...+.+....=.++..++.|.-+|.-.++. +|.+ ...|......=-+.|+.......
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 554431 12334444444444455566666666555543 1211 22233222222223332222222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH--HHHHHH--------HHHHHcCchhhhHH
Q 015370 215 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV--KYVNLV--------NIYITASHLVNAES 284 (408)
Q Consensus 215 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~~~~~~a~~ 284 (408)
|+.++..+. -|-.+|-..++.-...|+.+...++|+.... +++|-.. .|.-.| ..-....+.+.+.+
T Consensus 311 YE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 311 YEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222333221 2344444455555555666666666666655 3444221 011111 11123445555555
Q ss_pred HHHHHHHHhcccCccchHHHHHHHH----HhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 285 STLVEAEKSITQRQWITYDFLIILY----AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW 360 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (408)
++....+ .++....||.-+=-.| .+..++..|.+++.. ..|..|-..+|...|..=.+.+.++....++++.
T Consensus 388 -vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~--AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 388 -VYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN--AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred -HHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH--HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554444 2222333333322222 234445555555542 2333444445544444444445555555555554
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 361 KQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
++-+ +-|..+|......-...|+.+.|..+|.-.+
T Consensus 464 le~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 464 LEFS--PENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4432 2234444444444444444444444444443
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.4e-07 Score=85.61 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDI--FTYNLWISSCA 238 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~ 238 (408)
.+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34444455555555555555555443 22334444444555555555555555554443211 1111 12233444444
Q ss_pred hcCCHHHHHHHHHHHh
Q 015370 239 ATLNIDQVKKFLDEMS 254 (408)
Q Consensus 239 ~~g~~~~a~~~~~~~~ 254 (408)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5555555555555543
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.3e-08 Score=89.02 Aligned_cols=272 Identities=9% Similarity=0.034 Sum_probs=200.4
Q ss_pred CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370 68 PKRSATNVIQRWVSEGNQATVSELRHILKELRK--SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER 145 (408)
Q Consensus 68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 145 (408)
+-..|.++++-+.+...+.....-+.|-..+.- ..++..|.+.-+...... .-++.....-.+.....|++++|.+
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHH
Confidence 445667777766655544433333333333222 346788877777766543 3344444444455567899999999
Q ss_pred HHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370 146 YFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 224 (408)
Q Consensus 146 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 224 (408)
.|.+..... ..+...-.+.-.+-+.|++++|++.|-++... +.-++.+...+.+.|-...+..+|.+++.+.... ++
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 999877532 22333333444567789999999999886543 2236788888999999999999999999777654 45
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370 225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 304 (408)
Q Consensus 225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
.|....+-|...|-+.|+-.+|.+++-+--+ -++.+..+...|...|....-++++.. .|++. ...+|+..-|..
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~-y~eka--aliqp~~~kwql 664 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAIN-YFEKA--ALIQPNQSKWQL 664 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHH-HHHHH--HhcCccHHHHHH
Confidence 5788899999999999999999998876555 467788888899999999999999999 77764 567899999999
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370 305 LIILYA-GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349 (408)
Q Consensus 305 li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (408)
++..|. +.|++.+|.++|+...+. +.-|......|++.+...|.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 988776 589999999999988765 34477788888888887774
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=3.6e-08 Score=78.83 Aligned_cols=201 Identities=12% Similarity=-0.039 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237 (408)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 237 (408)
.+..-|.-.|...|+...|..-+++.++.+ |-+..+|..+...|.+.|+.+.|.+.|+........ +....|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 445667778888888888888888888876 446678888888888888888888888888875433 456677777777
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 015370 238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 317 (408)
Q Consensus 238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 317 (408)
|..|++++|...|++.........-..+|..+.-+..+.|+.+.|.. .+.+..+..+. ...+.-.+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-YLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-HHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 88888888888888888765454555677888888888888888888 78777766554 44555677777788889999
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 318 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 318 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
|..+++.....+. ++..+.-..|+.--..|+.+.|.++=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9888888877765 78888888888888888888888887777764
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=1.6e-08 Score=88.76 Aligned_cols=150 Identities=14% Similarity=0.043 Sum_probs=84.2
Q ss_pred ccHHHHHHHHHHHHhccCCCCC--hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHH
Q 015370 102 QRYKHALEISEWMVTHKEFVLS--DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEE 178 (408)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~ 178 (408)
+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|++.....| +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455566666666654322222 23455555666666666666666666555433 45666666666677777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370 179 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254 (408)
Q Consensus 179 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 254 (408)
.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...+++++|.+.|++..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 766666543 2244566666666666667777776666666542 322211222222334556666666665543
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.5e-08 Score=89.51 Aligned_cols=273 Identities=12% Similarity=-0.036 Sum_probs=212.7
Q ss_pred ChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370 123 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 201 (408)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 201 (408)
++.......+-+-..+++.+..++++.+... ++....+..=|.++...|+..+-..+=.+|.+.- |-.+.+|-++.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 4455555566677788999999999987765 5677788888889999999888888888888774 6678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370 202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 281 (408)
Q Consensus 202 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 281 (408)
|...|+.++|.+.|.+....... =...|-....+++-.|.-|+|...+...-+- ++-...-+--+..-|.+.+..+.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 99999999999999887654322 2357788889999999999999988876652 11122223345566888999999
Q ss_pred hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCC----ChhhHHHHHHHHHhcCCHHHHHH
Q 015370 282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT--KQKM----TSRNYICILSSYLMLGHLKEVGE 355 (408)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~ 355 (408)
|.+ ++.....-.+ .|....+-+.......+.+.+|..+|+..... ...+ -..+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~-Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEK-FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHH-HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999 7777655443 37777777777777889999999999876521 1111 23357789999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
.+++..... +.+..++.++.-.|...|+++.|.+.|.+.+. +.||.
T Consensus 477 ~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 999998854 56899999999999999999999999998876 77775
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=7.5e-08 Score=89.51 Aligned_cols=291 Identities=12% Similarity=0.061 Sum_probs=200.3
Q ss_pred HHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHH-HHHHHHHhh--
Q 015370 61 RIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYA-TRIDLMTKV-- 137 (408)
Q Consensus 61 ~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~-- 137 (408)
.++......+.|++.|+.-. .-+......+......+.+.|+.++|..+|..+.+.+ |+...|- .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcc
Confidence 44444456667777776532 2244445667788889999999999999999999975 5555554 444554222
Q ss_pred ---cChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015370 138 ---FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213 (408)
Q Consensus 138 ---g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 213 (408)
.+.+...++|+++...-|.......+.-.+..-..+. .+...+..+...|+| .+|+.|-..|......+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 2467778888888766554443333332222222343 355566778888964 577777777776666666666
Q ss_pred HHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370 214 VVEEIKRK----N----------VVPDI--FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277 (408)
Q Consensus 214 ~~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 277 (408)
++...... + -.|+. .++..+...|...|++++|.+++++..+. -|..+..|..-...|-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 66665432 1 12343 34455677788999999999999999884 3444777899999999999
Q ss_pred chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH--------HHHHHHHHhcCC
Q 015370 278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY--------ICILSSYLMLGH 349 (408)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~ 349 (408)
++.+|.+ .++....-.. -|-..=+-.+..+.+.|++++|.+++....+.+..|....+ .....+|.+.|+
T Consensus 243 ~~~~Aa~-~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 243 DLKEAAE-AMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CHHHHHH-HHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 7776654433 35556566777888999999999999988777654433221 335678999999
Q ss_pred HHHHHHHHHHHHh
Q 015370 350 LKEVGEIIDQWKQ 362 (408)
Q Consensus 350 ~~~A~~~~~~~~~ 362 (408)
+..|++-|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.9e-07 Score=81.99 Aligned_cols=224 Identities=11% Similarity=0.031 Sum_probs=154.5
Q ss_pred ChHHHHHHHhcCCCC---CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015370 139 GIHSGERYFEGLPLS---AK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 213 (408)
Q Consensus 139 ~~~~a~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 213 (408)
..+.++.-+.++... .| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555554432 12 25678888899999999999999999999875 4578899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 214 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
.|+...+.... +..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.. .+......
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~-~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKE-NLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHH-HHHHHHhh
Confidence 99999985432 4677888888899999999999999998874 2332212222223445678999999 77655433
Q ss_pred cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc---C--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 015370 294 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK---Q--KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 367 (408)
Q Consensus 294 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 367 (408)
.. ++...| . ......|+..++ +.+..+.+.- + .| ....|..+...+.+.|++++|...|++..+.+ +
T Consensus 195 ~~-~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~ 267 (296)
T PRK11189 195 LD-KEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V 267 (296)
T ss_pred CC-ccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 32 222222 2 223345665554 3444444221 1 11 23468889999999999999999999998754 3
Q ss_pred CCHHHHHH
Q 015370 368 FDISACNR 375 (408)
Q Consensus 368 ~~~~~~~~ 375 (408)
||..-+..
T Consensus 268 ~~~~e~~~ 275 (296)
T PRK11189 268 YNFVEHRY 275 (296)
T ss_pred chHHHHHH
Confidence 56555543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=8.9e-08 Score=76.64 Aligned_cols=190 Identities=9% Similarity=-0.015 Sum_probs=156.2
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYA 168 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~ 168 (408)
+...|.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|..+.|.+.|++.... +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 34557778899999999999999999875 555678888999999999999999999987666 456889999999999
Q ss_pred cCCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 247 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 247 (408)
..|++++|...|++....- ..--..+|..+.-+..+.|+++.|...|++..+.... ...+.-.+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999877642 3334568888888889999999999999998876433 3456777788888899999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 248 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
.+++..... + .++..+.-..|..-...|+.+.+.+
T Consensus 194 ~~~~~~~~~-~-~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 194 LYLERYQQR-G-GAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHHHHHHhc-c-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999998884 3 3788887788888888888888877
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=3.2e-06 Score=76.81 Aligned_cols=308 Identities=9% Similarity=-0.078 Sum_probs=190.6
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChH-HHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHH---H
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDS-DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTA---L 163 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~---l 163 (408)
..|..+...+...|+.+.+.+.+....+.....++.. ........+...|++++|.+++++.....| |...+.. +
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~ 86 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHH
Confidence 3455555666666777777777776665432233322 222234456778899999998888665544 4444442 2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 243 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 243 (408)
.......+..+.+.+.+.. .....+........+...+...|++++|...+++..+... .+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCH
Confidence 2222234556666666655 2222223344555667788999999999999999998653 2567788888899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc-cCccchH-H--HHHHHHHhcCCHHH
Q 015370 244 DQVKKFLDEMSCDSGGSDDW--VKYVNLVNIYITASHLVNAESSTLVEAEKSIT-QRQWITY-D--FLIILYAGLGNKDK 317 (408)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~ 317 (408)
++|..++++........++. ..|..+...+...|++++|.. +++......+ .+..... + .++.-+...|....
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA-IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH-HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 99999999988742222343 346688999999999999999 8888754433 1222211 2 33334444554433
Q ss_pred HHHH--HHHHHhccCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHhcCCh
Q 015370 318 IDQI--WKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATS-------DFDISACNRLLGAFSDVGLT 386 (408)
Q Consensus 318 a~~~--~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~g~~ 386 (408)
+.+. ...............+ .....++...|+.++|..+++.+...... ...+...-....++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3333 2111111111011122 24667788999999999999998763211 11233333344456689999
Q ss_pred HHHHHHHHHHHhc
Q 015370 387 EKANEFHMLLLQK 399 (408)
Q Consensus 387 ~~a~~~~~~m~~~ 399 (408)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=5.8e-06 Score=75.87 Aligned_cols=334 Identities=12% Similarity=0.094 Sum_probs=185.3
Q ss_pred HHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccC-----CCCChHHHHHHHHH
Q 015370 59 KSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE-----FVLSDSDYATRIDL 133 (408)
Q Consensus 59 ~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~ 133 (408)
+.+......-|..+..++++..+ .++..-.-.|..+++.+++++|-+.+........ -+.+...|..+.+.
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 34444434444566666666654 3444456677788888888888888877754321 13445566666666
Q ss_pred HHhhcCh---HHHHHHHhcCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 015370 134 MTKVFGI---HSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV--- 205 (408)
Q Consensus 134 ~~~~g~~---~~a~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 205 (408)
.++.-+. -....++..+...-+| ...|++|.+.|.+.|.++.|..+|++....-+ +..-|+.+.++|+.-
T Consensus 220 is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHH
Confidence 6554432 2233455555554455 56789999999999999999999988766421 233333333333221
Q ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHhCC
Q 015370 206 ---------------------------------------------------------------GQVEKVALVVEEIKRKN 222 (408)
Q Consensus 206 ---------------------------------------------------------------g~~~~a~~~~~~m~~~g 222 (408)
|+..+....|.+..+.
T Consensus 298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~- 376 (835)
T KOG2047|consen 298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT- 376 (835)
T ss_pred HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-
Confidence 2222222233333221
Q ss_pred CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 223 VVPD------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 223 ~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
+.|- ...|..+.+.|-..|+++.|..+|++..+. ..+-- ..+|..-..+-.+..+++.|++ ++.+....
T Consensus 377 vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~-lm~~A~~v 454 (835)
T KOG2047|consen 377 VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALK-LMRRATHV 454 (835)
T ss_pred cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHH-HHHhhhcC
Confidence 1111 123555566666777777777777776663 22211 3445555566666667777777 55554322
Q ss_pred cccC-----------------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015370 294 ITQR-----------------QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 356 (408)
Q Consensus 294 ~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 356 (408)
...| +...|...++.--..|-++....+|+++.+..+-.. ........-+-...-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 123455556655667777777777777776654322 1111111112234456777777
Q ss_pred HHHHHhhCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCC
Q 015370 357 IDQWKQSATSDFDI-SACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPT 404 (408)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~ 404 (408)
+++-+.... -|++ ..|++-+.-+.+ .-+.+.|..+|++.++ |+.|.
T Consensus 534 YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 534 YERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 776655432 2443 355555544443 3457788888888877 66664
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1e-07 Score=84.27 Aligned_cols=219 Identities=13% Similarity=0.077 Sum_probs=113.3
Q ss_pred hcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370 137 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215 (408)
Q Consensus 137 ~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 215 (408)
.|+.-.|..-|+......| +...|--+...|....+-++..+.|++..+.+ +-|+.+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433322 22225455555555566666666666655554 335555555555555556666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295 (408)
Q Consensus 216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (408)
++.+..... +...|.-+--+..+.++++++...|++.+++ +|..+.+|+.....+...+++++|.+ .++.....-+
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k-~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK-QYDKAIELEP 493 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH-HHHHHHhhcc
Confidence 655553221 3344444444445555666666666666553 44555556666666666666666665 5555444322
Q ss_pred cCc-----cchH--HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 296 QRQ-----WITY--DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 296 ~~~-----~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
..+ ..++ -.++..-. .+++..|.+++++..+...+ ....|..|...-.+.|+.++|+++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 211 1111 11111111 26667777777665554322 334566666666777777777777766543
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=7e-08 Score=83.61 Aligned_cols=221 Identities=13% Similarity=0.040 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 015370 128 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVG 206 (408)
Q Consensus 128 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 206 (408)
..+.+++...|+.+.++.-...-. .|.......+...+...++-+.+..-+++.......+ +..........+...|
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 334455555565554433222211 3444444444443333333344444443333222221 2122222223334456
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH----HHHcCchhhh
Q 015370 207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI----YITASHLVNA 282 (408)
Q Consensus 207 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a 282 (408)
++++|++++... .+.......+..|.+.++++.|.+.++.|.+- ..|. +...+..+ +.-.+.+.+|
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDS-ILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence 666666655431 23444555556666666666666666666552 1222 12222222 2222345666
Q ss_pred HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 015370 283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWK 361 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 361 (408)
.. +|+++.+. .+++..+.+.+..++...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.++.
T Consensus 187 ~y-~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 187 FY-IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HH-HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HH-HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 66 66665433 2345555566666666666666666666655443322 444555555555555655 45556666665
Q ss_pred hh
Q 015370 362 QS 363 (408)
Q Consensus 362 ~~ 363 (408)
..
T Consensus 264 ~~ 265 (290)
T PF04733_consen 264 QS 265 (290)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-06 Score=76.28 Aligned_cols=270 Identities=10% Similarity=-0.050 Sum_probs=200.9
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh-HHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHH
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD-SDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYT 161 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 161 (408)
.+-+++....+.+.+...|+..+|+..|++....+ |+. .......-.+.+.|+.+....+...+.... .+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 56678889999999999999999999999998743 432 233333445577888888877766665432 3455565
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
.-+......++++.|+.+-++.++.+ +.++..|-.-...+...|+.++|.-.|+..+.... -+..+|.-++.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 55666667789999999999988875 44566776667788899999999999999887532 36789999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HH-HHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370 242 NIDQVKKFLDEMSCDSGGSDDWVKYVNLV-NI-YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 319 (408)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 319 (408)
++.+|...-++..+. .+.+..+...+. .. +-....-++|.+ +++.-....+. -....+.+...+...|..+.+.
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKk-f~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKK-FAEKSLKINPI-YTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHH-HHHhhhccCCc-cHHHHHHHHHHHHhhCccchHH
Confidence 999998888777663 344555444442 22 222334577877 66654443222 2445667778888999999999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 320 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 320 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
.++++.... .||....+.|.+.+...+.+.+|++.|....+.+
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999987765 7899999999999999999999999999887643
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=3.3e-05 Score=68.59 Aligned_cols=246 Identities=12% Similarity=0.053 Sum_probs=138.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh-HHHHHHHHHHHhhcChHHHHHHHhcC
Q 015370 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD-SDYATRIDLMTKVFGIHSGERYFEGL 150 (408)
Q Consensus 72 a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 150 (408)
|.+|++.-..-. .-+...|-..+..=.+...+..|..+|++.... -|-+ ..|-..+..=-..|++..|.++|+.-
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344444443322 334444555666666677777777777777653 2332 23444444455677777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370 151 PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY 230 (408)
Q Consensus 151 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 230 (408)
..-.|+...|.+.|+.=.+-+.++.|..+|++..-. .|++.+|--....=-+.|+...|..+|+...+. + -|...-
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~-~~d~~~ 243 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF-L-GDDEEA 243 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-h-hhHHHH
Confidence 666678888888887777777788888888777664 377777777777777777777777777766643 1 122222
Q ss_pred HHHHHHH----HhcCCHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCchhhhHHH-------HHHHHHHhcccC
Q 015370 231 NLWISSC----AATLNIDQVKKFLDEMSCDSGGSDD--WVKYVNLVNIYITASHLVNAESS-------TLVEAEKSITQR 297 (408)
Q Consensus 231 ~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~-------~~~~~~~~~~~~ 297 (408)
..+..++ .++..++.|.-+|+-..+. ++-+ ...|..+...--+-|+....... -++.+...+ +-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 2222232 3345566666666665552 2222 23344444443344443332221 112222222 22
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
|-.+|--.+..-...|+.+...++|++....
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 4455555555555666666666666665543
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.6e-09 Score=59.42 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=16.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 187 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218 (408)
Q Consensus 187 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 218 (408)
|++||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.89 E-value=1.1e-06 Score=80.99 Aligned_cols=265 Identities=14% Similarity=0.134 Sum_probs=170.4
Q ss_pred HHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHH----HHHh--CCCCCChhhHHHHHHH
Q 015370 129 TRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT-EKAEELFE----RVKQ--SNLSFNALMYNEMMTL 201 (408)
Q Consensus 129 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~----~m~~--~~~~p~~~~~~~li~~ 201 (408)
..-..++..+.+++|...++..... ..+..|...+...-+. ......+. .+.. .+.|--..+...+...
T Consensus 133 l~~~~~~~~~~l~ea~~~~e~~~~~----~~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~ 208 (508)
T KOG1840|consen 133 LLAAIQALLLQLDEAEQGQEQAAVT----PVKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEM 208 (508)
T ss_pred HHHHHHHHHHHhhhhhccccccccc----chhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence 3334445566677777666655432 1133344333332222 11111111 1222 2233334577779999
Q ss_pred HHhcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC-CCC-CHHHHHH
Q 015370 202 YMSVGQVEKVALVVEEIKRK-----NV-VPDIF-TYNLWISSCAATLNIDQVKKFLDEMSCD----SG-GSD-DWVKYVN 268 (408)
Q Consensus 202 ~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~~ 268 (408)
|...|++++|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... .| ..| -..+++.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999887653 21 23332 3334666888899999999999887542 11 222 2345788
Q ss_pred HHHHHHHcCchhhhHHHHHHHHHHhc------ccCcc-chHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCCC----h
Q 015370 269 LVNIYITASHLVNAESSTLVEAEKSI------TQRQW-ITYDFLIILYAGLGNKDKIDQIWKSLRMT---KQKMT----S 334 (408)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~ 334 (408)
|..+|.+.|++++|.. .++...+-. ..|.+ ..++.+...|...+++++|..++....+. -+.++ .
T Consensus 289 La~ly~~~GKf~EA~~-~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a 367 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEE-YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA 367 (508)
T ss_pred HHHHHhccCChHHHHH-HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH
Confidence 8889999999999988 666554311 12222 34567777888999999999998865432 12222 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 335 RNYICILSSYLMLGHLKEVGEIIDQWKQSA-----TSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.+++.|...|.+.|++++|.+++++.+... ...+. -..++.|...|.+.+++.+|.++|.+...
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 468889999999999999999999886531 11222 34577899999999999999999987543
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4.6e-06 Score=71.13 Aligned_cols=130 Identities=10% Similarity=0.023 Sum_probs=86.4
Q ss_pred HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHh
Q 015370 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-ILSSYLM 346 (408)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~ 346 (408)
++..++.-..++++.+. .+..+..-....|...+ .+..+++..|++.+|+++|-++....++ |..+|.+ |.++|.+
T Consensus 364 smAs~fFL~~qFddVl~-YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLT-YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 34444444455555555 55555444444444444 4677888899999999999877655544 5666655 6778899
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370 347 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403 (408)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 403 (408)
.+..+.|++++-++... .........+..-|.+.+.+--|.+.|+.+...+-.|
T Consensus 441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999998887664321 1122334455678889999999999999988744333
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.2e-06 Score=72.82 Aligned_cols=261 Identities=12% Similarity=0.007 Sum_probs=160.9
Q ss_pred ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH-HHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHH
Q 015370 87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR-IDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLH 165 (408)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~ 165 (408)
+...+..+..+|-...++..|-+.++++... .|...-|... ...+-+.+.+.+|+++...|... ++...-..-+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLq 118 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQ 118 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 5555666666777777777777777777653 4554444432 24555666777777777666542 22111111122
Q ss_pred H--HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370 166 L--YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 243 (408)
Q Consensus 166 ~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 243 (408)
+ .-..+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+-+---....|+.-+. ..+.|++
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qy 194 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQY 194 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhH
Confidence 2 223466666777776666544 566666666667789999999999998876543335567876554 4467899
Q ss_pred HHHHHHHHHHhcCCCCCCCH----------------------------HHHHHHHHHHHHcCchhhhHHHHHHHHHHh-c
Q 015370 244 DQVKKFLDEMSCDSGGSDDW----------------------------VKYVNLVNIYITASHLVNAESSTLVEAEKS-I 294 (408)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~----------------------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~ 294 (408)
+.|.++..++.++ |+...+ ..+|.-...+.+.++++.|.+ .+.+|--+ .
T Consensus 195 asALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e-aLtDmPPRaE 272 (459)
T KOG4340|consen 195 ASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE-ALTDMPPRAE 272 (459)
T ss_pred HHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH-HhhcCCCccc
Confidence 9999999998885 665332 112222334567778888877 55444211 1
Q ss_pred ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 295 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 295 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
...|.+|...+.-.- -.+++.+..+-+.-+...++ -...||..++-.||+..-++-|-+++.+
T Consensus 273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 123556665543221 23455555555555555544 3566899999999999999999888876
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2e-07 Score=80.81 Aligned_cols=223 Identities=10% Similarity=0.007 Sum_probs=146.9
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC---CCHHHHHHHH
Q 015370 88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA---KTSETYTALL 164 (408)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ll 164 (408)
......+.+++...|+++.++ ..+... -.|.......+...+....+-+.+..-+++..... .+........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 344556777888888876544 444333 25666666555555554455666666665544332 2333333334
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhc
Q 015370 165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS----CAAT 240 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~ 240 (408)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..+ +...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCc
Confidence 6677789999998888643 25677788888999999999999999999875 3343 33334443 3334
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH-HHHH
Q 015370 241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK-DKID 319 (408)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~ 319 (408)
+.+.+|..+|+++.++ ..+++.+.+.+..++...|++++|.+ ++.+.....+. +..+...++......|+. +.+.
T Consensus 181 e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~-~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEE-LLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHH-HHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHH
T ss_pred hhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHH
Confidence 5688999999998874 45788888999999999999999999 77776654433 566777777777777877 6677
Q ss_pred HHHHHHHhc
Q 015370 320 QIWKSLRMT 328 (408)
Q Consensus 320 ~~~~~m~~~ 328 (408)
+++.+++..
T Consensus 257 ~~l~qL~~~ 265 (290)
T PF04733_consen 257 RYLSQLKQS 265 (290)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHh
Confidence 888887765
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=2e-06 Score=85.27 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=146.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 142 SGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSF---NALMYNEMMTLYMSVGQVEKVALVVEE 217 (408)
Q Consensus 142 ~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~ 217 (408)
.|..+-..+...+.+...|-..|......++.++|.+++++.+.. ++.- -...|.++++.-...|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 333333334443334666777777777777777777777776543 1111 123566666666666666777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC
Q 015370 218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 297 (408)
Q Consensus 218 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (408)
..+. .. .-..|..|...|.+.+++++|.++++.|.++.+ -...+|...+..+.+.++-+.|.. ++.+..+..++.
T Consensus 1523 Acqy-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~-lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1523 ACQY-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARE-LLKRALKSLPKQ 1597 (1710)
T ss_pred HHHh-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHH-HHHHHHhhcchh
Confidence 7664 11 224566677777777777777777777777544 455667777777777777777777 666666655543
Q ss_pred c-cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCH-HHHHH
Q 015370 298 Q-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-SACNR 375 (408)
Q Consensus 298 ~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 375 (408)
. .....-.+..-.+.|+.+.+..+|+.....-++ -...|+..|+.=.+.|+.+.+..+|++.+..+...... ..|..
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 2 222333444446677777777777766655322 33467777777777777777777777777765322222 34555
Q ss_pred HHHHHHhcCChHHHHH
Q 015370 376 LLGAFSDVGLTEKANE 391 (408)
Q Consensus 376 li~~~~~~g~~~~a~~ 391 (408)
.+..-.+.|+-+.+..
T Consensus 1677 wLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHhcCchhhHHH
Confidence 5554445565544433
No 84
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=5.3e-09 Score=58.16 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370 221 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254 (408)
Q Consensus 221 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 254 (408)
+|+.||..||+++|++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888874
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=2.9e-06 Score=84.08 Aligned_cols=231 Identities=9% Similarity=0.045 Sum_probs=178.5
Q ss_pred CCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-C-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 015370 121 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-A-----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 194 (408)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 194 (408)
+-+...|-..|......++.+.|.+++++.... . .-...|.++++.-..-|.-+...++|+++.+.. . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 344677888899999999999999999987654 1 236688899988888898899999999999874 1 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 274 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 274 (408)
|..|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++++..+...-.-......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 889999999999999999999999875 3346778999999999999999999999998873211223444566677778
Q ss_pred HcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHH
Q 015370 275 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKE 352 (408)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 352 (408)
+.|+.+.++. +|+.....-++ -...|+..|+.-.+.|+.+.+..+|++....++.|-. ..|.-.+..=-..|+-+.
T Consensus 1612 k~GDaeRGRt-lfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRT-LFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHH-HHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8999999999 88887776554 6778999999999999999999999999988876532 223333333333444444
Q ss_pred HHHH
Q 015370 353 VGEI 356 (408)
Q Consensus 353 A~~~ 356 (408)
++.+
T Consensus 1690 vE~V 1693 (1710)
T KOG1070|consen 1690 VEYV 1693 (1710)
T ss_pred HHHH
Confidence 4333
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=6.1e-05 Score=70.82 Aligned_cols=314 Identities=12% Similarity=0.052 Sum_probs=180.3
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC--
Q 015370 77 QRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-- 154 (408)
Q Consensus 77 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 154 (408)
.++......-|...|..+.-++...|+++.+-+.|++...- ..-....|..+-..+...|.-..|..++++-....
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33444445678899999999999999999999999988753 23345667777777777777777777777644432
Q ss_pred CC-HHHHHHHHHHHH-cCCCHHHHHHHHHHHHh-----------------------------------------------
Q 015370 155 KT-SETYTALLHLYA-GAKWTEKAEELFERVKQ----------------------------------------------- 185 (408)
Q Consensus 155 ~~-~~~~~~ll~~~~-~~~~~~~A~~~~~~m~~----------------------------------------------- 185 (408)
|+ ...+-..-..|. +.+.+++++..-.+..+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 32 222222222222 22444444444444333
Q ss_pred ---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 015370 186 ---SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 262 (408)
Q Consensus 186 ---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 262 (408)
.+ +-|+.+...+---|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+......|....
T Consensus 470 av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 11 11222222223334455666666666666666544445666666666666666666666665554443222000
Q ss_pred ------------------HHHHH---------------------------------------------------------
Q 015370 263 ------------------WVKYV--------------------------------------------------------- 267 (408)
Q Consensus 263 ------------------~~~~~--------------------------------------------------------- 267 (408)
..|..
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 00011
Q ss_pred --------------------------HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 015370 268 --------------------------NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 321 (408)
Q Consensus 268 --------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 321 (408)
.....+.+.+..++|.. .+.+..+- .+-....|......+...|..++|.+.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~-CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS-CLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 11111112222222221 11111110 011112223333344455667777777
Q ss_pred HHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 322 WKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGE--IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 322 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
|...... .|+ +....++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|+...+
T Consensus 707 f~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 707 FLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7655443 454 4467788889999998888877 899998865 45888999999999999999999999998876
Q ss_pred c
Q 015370 399 K 399 (408)
Q Consensus 399 ~ 399 (408)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 3
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=4.3e-05 Score=65.12 Aligned_cols=303 Identities=12% Similarity=-0.031 Sum_probs=214.3
Q ss_pred CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH---HHHHHhhcChHHHHHHHhcCCCCCCCHHHHH-
Q 015370 86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR---IDLMTKVFGIHSGERYFEGLPLSAKTSETYT- 161 (408)
Q Consensus 86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 161 (408)
.++.-..-+-+.+...|.+..|+.-|+...+- |+..|.++ ...|...|+-..|+.=+....+..||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~-----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG-----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 45555666888889999999999999998763 34444443 4567788888888877777766667643322
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCC--Ch----------h--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSF--NA----------L--MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI 227 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p--~~----------~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 227 (408)
--...+.+.|++++|..=|+..++....- .. . .....+..+.-.|+...|......+.+-. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 22466789999999999999998875210 11 1 12233455667899999999999998853 3477
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC--ccchHHHH
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--QWITYDFL 305 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 305 (408)
..|..-..+|...|++..|+.=++...+- -..+..++--+-..+...|+.+.++. .+.+..+-.+.. ....|-.|
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~-~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLK-EIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHH-HHHHHHccCcchhhHHHHHHHH
Confidence 88888889999999999998888777662 34566677777888889999999988 666655543221 11122211
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHhccCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 015370 306 ---------IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI---CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 373 (408)
Q Consensus 306 ---------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 373 (408)
+......+++.++++-.+...+.........|+ .+-.++...|++.+|++...+..+.. +.|+.++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHH
Confidence 222345677888888777776664442333443 45667778899999999999988742 3357888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 374 NRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 374 ~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
.-=..+|.-...++.|..=|+...+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77888999999999999999988873
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=5.6e-05 Score=69.71 Aligned_cols=319 Identities=11% Similarity=0.025 Sum_probs=185.2
Q ss_pred CcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhc
Q 015370 70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG 149 (408)
Q Consensus 70 ~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 149 (408)
+.|.+....-.+ +-.-+.+.|+.+.-.+....++++|++.|......+ +-|...+.-+--.-++.|+++.....-.+
T Consensus 58 ~ea~~~vr~glr-~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 58 EEAYELVRLGLR-NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred HHHHHHHHHHhc-cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 444444432222 344456677777777777889999999999998865 55566777666666777787776666555
Q ss_pred CCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChhhHHHHHH------HHHhcCCHHHHHHHHHHHHhC
Q 015370 150 LPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALMYNEMMT------LYMSVGQVEKVALVVEEIKRK 221 (408)
Q Consensus 150 ~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~~ 221 (408)
+.+.. .....|..+..++.-.|+...|..++++..+.. -.|+...|..... ...+.|.+++|++.+..-...
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 54443 457788999999999999999999999888764 2466666654433 335678888888877655443
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH----------
Q 015370 222 NVVPDIFTYN-LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA---------- 290 (408)
Q Consensus 222 g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---------- 290 (408)
+ .|...+. +-...+.+.+++++|..++..+..+ .|.+..-|-.+..++.+..+.-++...++...
T Consensus 215 -i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 215 -I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred -H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 2 2444333 3355677889999999999998884 33334444445555544444444442122222
Q ss_pred ------------------------HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH----hccC----------CC
Q 015370 291 ------------------------EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR----MTKQ----------KM 332 (408)
Q Consensus 291 ------------------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~----------~p 332 (408)
.+.|.+ .++..+...|-.-...+-..++...+. ..|. .|
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 222211 122222222221111111111111111 1110 22
Q ss_pred Chhh--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370 333 TSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 400 (408)
Q Consensus 333 ~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 400 (408)
.... +-.++..+-+.|+++.|..+++..++.. +.-+..|..-.+.+...|++++|..++++..+.+
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 2222 3346666777777777777777776642 1223455555566777777777777777766543
No 89
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=6.9e-06 Score=72.25 Aligned_cols=179 Identities=9% Similarity=0.046 Sum_probs=118.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc-ChHHHHHHHhcCCCC-CCCHHHHHHHHHHHH
Q 015370 91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF-GIHSGERYFEGLPLS-AKTSETYTALLHLYA 168 (408)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~ 168 (408)
+..+-..+...++.++|+.+.+++.+.. +-+...|+....++...| ++++++..++++... +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 3344445556678889999999988753 333456666666666666 578888888877665 345677776666666
Q ss_pred cCCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH
Q 015370 169 GAKWT--EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT---LNI 243 (408)
Q Consensus 169 ~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~ 243 (408)
+.|+. ++++.+++++.+.+ +-|..+|+....++.+.|+++++++.++++++.++. |..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 67788888888776 457788888888888888899999999988887655 556666655554443 212
Q ss_pred ----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 015370 244 ----DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275 (408)
Q Consensus 244 ----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 275 (408)
+...++..++.. ..+-+...|+-+...+..
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhc
Confidence 344555544444 124455555555555544
No 90
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=2.9e-05 Score=68.41 Aligned_cols=212 Identities=7% Similarity=-0.046 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370 127 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 204 (408)
Q Consensus 127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 204 (408)
+..+-..+...++.++|+.+.+++....| +..+|+.--.++.+.| ++++++..++++...+ +-+..+|+.-...+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 33344444555566666666666554433 3445554444555555 4566666666666554 3344555555444445
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc---Cch
Q 015370 205 VGQV--EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA---SHL 279 (408)
Q Consensus 205 ~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 279 (408)
.|+. ++++.+++.+.+...+ |..+|+...-++...|+++++++.++++.+. .+-+...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccc
Confidence 5542 4556666666554433 4555665555666666666666666666552 233444455444444333 111
Q ss_pred ----hhhHHHHHHHHHHhcccCccchHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370 280 ----VNAESSTLVEAEKSITQRQWITYDFLIILYAGL----GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 345 (408)
Q Consensus 280 ----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 345 (408)
++... ....+....+ .|...|+.+...+... +...+|...+.+....++ .+......|++.|+
T Consensus 196 ~~~~e~el~-y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELK-YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHH-HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 22333 3333333322 2555555555555442 223345455444333221 12333444455444
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=2.7e-05 Score=80.02 Aligned_cols=306 Identities=11% Similarity=0.042 Sum_probs=192.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccC-C----CCC--hHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCC----HHH
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKE-F----VLS--DSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKT----SET 159 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~ 159 (408)
.....+...|+++++...+......-. . .+. ......+...+...|++++|...+++.... ..+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344455677899999888887754310 0 111 112222334556789999999888875432 112 234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CH
Q 015370 160 YTALLHLYAGAKWTEKAEELFERVKQS----NL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVV--P-DI 227 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~ 227 (408)
.+.+...+...|++++|...+++.... |- .+...++..+...+...|++++|...+++... .|.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 566777788899999999999887642 21 11123556667778889999999999887654 2221 1 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc-cchH-
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITY- 302 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~- 302 (408)
..+..+...+...|++++|...+++.... .+.......+..+...+...|+.+.|.. .+........... ...+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR-YLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhcccccHhHh
Confidence 34445556677789999999988876542 1211123345556778889999999998 7777654322111 1111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCC-CHH
Q 015370 303 ----DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSA---TSDF-DIS 371 (408)
Q Consensus 303 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~ 371 (408)
...+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++..... ...+ ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11223445578999999888765432111111 113456677889999999999999876531 1111 234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
+...+..++.+.|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666778888999999999999988764
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.8e-06 Score=78.20 Aligned_cols=253 Identities=12% Similarity=0.020 Sum_probs=190.6
Q ss_pred HHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 015370 133 LMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 211 (408)
Q Consensus 133 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 211 (408)
-+.+.|++.+|.-.|+...... .+...|--|.......++-..|+..+++..+.+ +-|..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 4467888999998898866654 468999999999999999999999999999986 55778888888899999999999
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370 212 ALVVEEIKRKNVV--------PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283 (408)
Q Consensus 212 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (408)
++.++..+....+ ++...-.. ..+.....+.+..++|-++....+..+|+.++..|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999888654311 00000000 1222333455677777777665566688889999999999999999999
Q ss_pred HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
. .|+......+. |...||-|...++...+.++|+.-|.+.++. +|+.. ...-|.-.|...|.+++|...|-..+.
T Consensus 451 D-cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 D-CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred H-HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9 88888777655 8899999999999999999999999988775 55432 333466678899999999998876543
Q ss_pred ---h-----CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015370 363 ---S-----ATSDFDISACNRLLGAFSDVGLTEKANEF 392 (408)
Q Consensus 363 ---~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 392 (408)
+ +...++..+|.+|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 11122346788887777777877755443
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=80.27 Aligned_cols=217 Identities=16% Similarity=0.056 Sum_probs=166.8
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG 169 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~ 169 (408)
.=..+...+...|-...|+.+|++. ..|.-.|.+|+..|+.++|..+..+..+.+||...|..+.+....
T Consensus 400 ~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 3345667777888888888888875 345566778888888888888877766667888899998888888
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370 170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 249 (408)
Q Consensus 170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 249 (408)
..-+++|.++++....+ +-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+..+..+.++++.+.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 88888888888775543 111111222347889999999887766432 2456777777788889999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
|..... +-+.+...||.+-.+|.+.++-.+|.. .+.+..+.. ..+...|...+....+.|.+++|.+.+.++...
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~-~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFR-KLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHH-HHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 998887 566777889999999999999999999 888888877 446777877888888999999999999877543
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=4.9e-06 Score=70.72 Aligned_cols=190 Identities=12% Similarity=-0.004 Sum_probs=127.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHH
Q 015370 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW-VKY 266 (408)
Q Consensus 190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 266 (408)
.....+-.+...+.+.|++++|...|+++...... |. ..++..+..++...|++++|...++++.+...-.+.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667888888899999999999999998775321 11 2456777888889999999999999988743222221 234
Q ss_pred HHHHHHHHHc--------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHH
Q 015370 267 VNLVNIYITA--------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 338 (408)
Q Consensus 267 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 338 (408)
..+..++.+. |+.++|.+ .+..+....+. +...+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFE-AFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHH-HHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 5555556554 67788888 77777665433 2222222211100 000 000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
.+...+.+.|++++|...+++..+...-.| ....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678899999999999999987642223 3567888999999999999999999888764
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.1e-06 Score=79.82 Aligned_cols=235 Identities=11% Similarity=-0.004 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 205 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 205 (408)
.-..+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||+..|..+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 33456678888999999999998764 6888999999999999999999888884 68999999999988777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHH
Q 015370 206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 285 (408)
Q Consensus 206 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 285 (408)
.-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+- .+....+|-.+..++.+.+++..|.+
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~- 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVK- 540 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHH-
Confidence 7788999888765432 1111222233468999999999887663 34566778888999999999999999
Q ss_pred HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 015370 286 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 365 (408)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 365 (408)
.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+.|.+++|++.++++.+...
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 777655443 447789999999999999999999999998877633 444555666677889999999999998875432
Q ss_pred CCCCHHHHHHHHHHHH
Q 015370 366 SDFDISACNRLLGAFS 381 (408)
Q Consensus 366 ~~~~~~~~~~li~~~~ 381 (408)
...|...-..++....
T Consensus 619 ~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVL 634 (777)
T ss_pred hcccchhhHHHHHHHH
Confidence 2234444444444443
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=1e-05 Score=68.71 Aligned_cols=187 Identities=11% Similarity=0.021 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 015370 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FT 229 (408)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~ 229 (408)
.....+..+...+.+.|++++|...|+++.... +.+. .++..+..++.+.|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456777778888888888888888888887653 2222 46677788888888888888888888765332111 23
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccch
Q 015370 230 YNLWISSCAAT--------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 301 (408)
Q Consensus 230 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 301 (408)
+..+..++... |++++|.+.++.+.+. .+.+...+..+..... ...... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~---------------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA---------------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH---------------HH
Confidence 44444455443 7788999999998874 2223322222211110 000000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
...+...+.+.|++++|...++....... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668889999999999998877632 12 2456778999999999999999999888764
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=0.00015 Score=67.05 Aligned_cols=300 Identities=9% Similarity=0.007 Sum_probs=188.2
Q ss_pred ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370 87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL 166 (408)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~ 166 (408)
-+..|-..+..+.++|++......|+.....-++.-...+|...+......+-++.+.+++++..+- +...-+-.|..
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~ 178 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEY 178 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence 3445556666777888888888888887765334444567888888888888888899988887763 44457778888
Q ss_pred HHcCCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 015370 167 YAGAKWTEKAEELFERVKQSN------LSFNALMYNEMMTLYMSVGQVE---KVALVVEEIKRKNVVPDI--FTYNLWIS 235 (408)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~--~~~~~ll~ 235 (408)
+++.+++++|-+.+....... .+.+...|..+.+..+++-+.- ....+++.+... -+|. ..|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 899999999998888876532 2456667777777766654433 233444444432 2443 56788888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH----------------H-----HHHHHHH--
Q 015370 236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES----------------S-----TLVEAEK-- 292 (408)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----------------~-----~~~~~~~-- 292 (408)
.|.+.|.+++|..++++.... ..+..-+..+.++|++-..-.-+.. + -++.+..
T Consensus 257 YYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 888888888888888887663 2333344455555543222111111 0 1111111
Q ss_pred ---------hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC------hhhHHHHHHHHHhcCCHHHHHHHH
Q 015370 293 ---------SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT------SRNYICILSSYLMLGHLKEVGEII 357 (408)
Q Consensus 293 ---------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~ 357 (408)
...+.++..|..-.. ...|+..+....|.+.... +.|- ...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 111223333433222 2346666777777766543 2332 224667788888999999999999
Q ss_pred HHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 358 DQWKQSATSDFDI----SACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 358 ~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
++..+.. . +.+ .+|..-...-.+..+++.|+.+.+....
T Consensus 411 eka~~V~-y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 411 EKATKVP-Y-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHhhcCC-c-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 9987653 1 222 3555555556677888888888777654
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00012 Score=66.83 Aligned_cols=317 Identities=12% Similarity=0.054 Sum_probs=146.1
Q ss_pred cHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHH--HhhcChHHHHHHHh
Q 015370 71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM--TKVFGIHSGERYFE 148 (408)
Q Consensus 71 ~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~ 148 (408)
.|......+...+ +-+...+..=+-++.+.++|++|+.+.+.-... ..+..-+ +=.+| .+.+..++|+..++
T Consensus 30 ~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~--fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 30 EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFF--FEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhh--HHHHHHHHHcccHHHHHHHHh
Confidence 3444444444433 334444555555555666666665333322110 0000000 12222 34555666666555
Q ss_pred cCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015370 149 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 228 (408)
Q Consensus 149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 228 (408)
.... .|..+...-...+-+.|++++|+.+|+.+.+.+. ..+..-+.+-+..-. .+.. -+.+......| ..
T Consensus 104 ~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~--a~l~-~~~~q~v~~v~-e~ 173 (652)
T KOG2376|consen 104 GLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVA--AALQ-VQLLQSVPEVP-ED 173 (652)
T ss_pred cccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHH--Hhhh-HHHHHhccCCC-cc
Confidence 3322 2233333344455555666666666666655542 111111111110000 0000 01122222333 33
Q ss_pred HHHHHHH---HHHhcCCHHHHHHHHHHHhc----CC--CCCCCHH-------HHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 229 TYNLWIS---SCAATLNIDQVKKFLDEMSC----DS--GGSDDWV-------KYVNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 229 ~~~~ll~---~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
+|..+.+ .+...|++.+|+++++...+ .. +...+.. .-.-|...+-..|+.++|.. ++....+
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~-iy~~~i~ 252 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS-IYVDIIK 252 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence 5554444 34568999999999998832 11 1111111 12235566778899999999 8888877
Q ss_pred hcccCcc---chHHHHHHHHHhcCCHH----------------HHHHHHHHHH------------------------hcc
Q 015370 293 SITQRQW---ITYDFLIILYAGLGNKD----------------KIDQIWKSLR------------------------MTK 329 (408)
Q Consensus 293 ~~~~~~~---~~~~~li~~~~~~~~~~----------------~a~~~~~~m~------------------------~~~ 329 (408)
..+.... +.-|.|+..-....-++ .++.-+..=+ ...
T Consensus 253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 6554221 12222222111110000 0000000000 000
Q ss_pred CCCC--hhhHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHH
Q 015370 330 QKMT--SRNYICILSSYL--MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM--------LLL 397 (408)
Q Consensus 330 ~~p~--~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~ 397 (408)
..+. ...+.+++..+. +.....+|..++...-+.. ..-...+--.++......|+++.|.+++. .+.
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 1111 122334444332 2234677777777766543 22234455667777888999999999999 666
Q ss_pred hcCCCCCC
Q 015370 398 QKNCAPTN 405 (408)
Q Consensus 398 ~~g~~p~~ 405 (408)
+.+..|-.
T Consensus 412 ~~~~~P~~ 419 (652)
T KOG2376|consen 412 EAKHLPGT 419 (652)
T ss_pred hhccChhH
Confidence 66666643
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5.8e-05 Score=72.99 Aligned_cols=253 Identities=12% Similarity=0.063 Sum_probs=155.0
Q ss_pred HHHHHHHHHcCCC--CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChHHHHHHHhc
Q 015370 73 TNVIQRWVSEGNQ--ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIHSGERYFEG 149 (408)
Q Consensus 73 ~~~l~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 149 (408)
.++++..++.+.+ .|++.....++++...+-..+-+++++++.-....-. +...-|.|+-... .-+...+.++.++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHH
Confidence 4556666665543 4677778889999999999999999999875431111 1222233332222 2334445555555
Q ss_pred CCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---------------------CCCChhhHHHHHHHHHhcCC
Q 015370 150 LPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSN---------------------LSFNALMYNEMMTLYMSVGQ 207 (408)
Q Consensus 150 ~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---------------------~~p~~~~~~~li~~~~~~g~ 207 (408)
+..- .|+ +...+...+-+++|+.+|++....+ ---.+..|+.+..+-...|.
T Consensus 1046 LdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1046 LDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred hccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4432 122 1122223333444444443321110 00135678888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHH
Q 015370 208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 287 (408)
Q Consensus 208 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 287 (408)
..+|.+-|-+. -|...|.-+++...+.|.+++-..++...++. .-.|...+ .|+-+|++.++..+-.+ ++
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~-fi 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEE-FI 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHH-Hh
Confidence 88887766322 26678888999999999999988888877774 55565554 88889999888777666 22
Q ss_pred HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370 288 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 358 (408)
Q Consensus 288 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (408)
..||......+.+-|...|.++.|.-+|.. ...|..|...+...|++..|.+.-+
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 346666666777777777777777776652 3345556666666666666655444
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00036 Score=63.89 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=177.0
Q ss_pred cccccccccccCCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcccHHHHHHHHHHHHhcc
Q 015370 40 SQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSEL-RHILKELRKSQRYKHALEISEWMVTHK 118 (408)
Q Consensus 40 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~ 118 (408)
+.+.++.. .......+.-.+..+ ...+.-.+.+......+.......+ .-=..+..+.++.++|+..++...
T Consensus 34 ~~~Kil~~---~pdd~~a~~cKvVal-Iq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~--- 106 (652)
T KOG2376|consen 34 TANKILSI---VPDDEDAIRCKVVAL-IQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD--- 106 (652)
T ss_pred HHHHHHhc---CCCcHhhHhhhHhhh-hhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhccc---
Confidence 45555554 334444455555554 2233334444322233321112222 122334456789999999888221
Q ss_pred CCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CC----------------------------HHHHHHH---HHH
Q 015370 119 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KT----------------------------SETYTAL---LHL 166 (408)
Q Consensus 119 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~----------------------------~~~~~~l---l~~ 166 (408)
+.+..+...-...+-+.|++++|..+|+.+.... ++ ..+|..+ .-.
T Consensus 107 --~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~ 184 (652)
T KOG2376|consen 107 --RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACI 184 (652)
T ss_pred --ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHH
Confidence 2344577777788999999999999999995542 11 1133332 344
Q ss_pred HHcCCCHHHHHHHHHHHHhCC-------------CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--
Q 015370 167 YAGAKWTEKAEELFERVKQSN-------------LSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-- 230 (408)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~-------------~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-- 230 (408)
++..|++.+|+++++...+.+ +.-+.. .---|..++...|+-++|..+|...++.... |....
T Consensus 185 ~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av 263 (652)
T KOG2376|consen 185 LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAV 263 (652)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHH
Confidence 567788999999998873221 100111 1123444566789999999999888876542 33211
Q ss_pred --HHHHHHHHhc---------------------------------------------CCHHHHHHHHHHHhcCCCCCCCH
Q 015370 231 --NLWISSCAAT---------------------------------------------LNIDQVKKFLDEMSCDSGGSDDW 263 (408)
Q Consensus 231 --~~ll~~~~~~---------------------------------------------g~~~~a~~~~~~~~~~~~~~~~~ 263 (408)
|.|+..-... +..+.+.++-. ...+..|..
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a---~lp~~~p~~ 340 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA---SLPGMSPES 340 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---hCCccCchH
Confidence 1111110000 01111111111 111222322
Q ss_pred HHHHHHHHHHH--HcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH--------HHHhccCCCC
Q 015370 264 VKYVNLVNIYI--TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK--------SLRMTKQKMT 333 (408)
Q Consensus 264 ~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~ 333 (408)
. +.+++.... +...+.++.+ ++....+..+......--.++......|+++.|.+++. .+.+.+..|-
T Consensus 341 ~-~~~ll~~~t~~~~~~~~ka~e-~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 341 L-FPILLQEATKVREKKHKKAIE-LLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred H-HHHHHHHHHHHHHHHHhhhHH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 2 222322222 2223555666 55555555444444555566777788899999998888 4555444443
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSAT-SDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+...++..+.+.++-+.|..++++.+..-. -.+. ..++.-+...-.+.|+.++|..+++++.+
T Consensus 419 --~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 419 --TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred --HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 344455566666666666666655443100 0111 12233333333456777777777777766
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=2.5e-05 Score=76.72 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=122.9
Q ss_pred CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCC-C---------
Q 015370 86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLS-A--------- 154 (408)
Q Consensus 86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~--------- 154 (408)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+...++.+++..+ .+... .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 35677889999999999999999999977775 344 33444444466777776665544 22111 1
Q ss_pred ----------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370 155 ----------KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 224 (408)
Q Consensus 155 ----------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 224 (408)
.+...+..+..+|-+.|+.++|..+++++++.+ +-|+.+.|.+...|... ++++|.+++.+....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 122455566666666677777777777776665 44666667777666666 677777666665543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370 225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 304 (408)
Q Consensus 225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
+...+++.++.+++.++... .+.+...+..+.+.....- +...-+.++--
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~----------------~~~~~~~~~~~ 228 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR----------------EFTRLVGLLED 228 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh----------------ccchhHHHHHH
Confidence 33444555666666665552 2222222111111111110 11112223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 345 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 345 (408)
+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 444555566666666666666655432 4444444555444
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00011 Score=67.89 Aligned_cols=258 Identities=12% Similarity=0.077 Sum_probs=179.1
Q ss_pred HHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHH
Q 015370 97 ELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEK 175 (408)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~ 175 (408)
-+-..+++...+++.+.+.+. .+-...+.....-.+...|+-++|......-... ..+.++|..+.-.+-...++++
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 344678888899998888884 3445567666666778888999998887765544 4678889999888888899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
|++.|......+ +-|...|.-+--.-++.++++.......+..+... -....|..+..++.-.|+...|..+++...+
T Consensus 94 aiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 94 AIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876 55777888777777888888888888777776422 2456677777888888999999999998887
Q ss_pred CCCCCCCHHHHHHHHH------HHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 256 DSGGSDDWVKYVNLVN------IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 256 ~~~~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
...-.|+...|..... ...+.|..++|.+ .+......... ....-..-...+.+.+++++|..+|..+...
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale-~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r- 248 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE-HLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER- 248 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH-HHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-
Confidence 5334566666554333 3455677777777 44443322211 1222223455567889999999999988876
Q ss_pred CCCChhhHHH-HHHHHHhcCCHHHHH-HHHHHHHh
Q 015370 330 QKMTSRNYIC-ILSSYLMLGHLKEVG-EIIDQWKQ 362 (408)
Q Consensus 330 ~~p~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~ 362 (408)
.||..-|.. +..++.+-.+.-++. .+|....+
T Consensus 249 -nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 249 -NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred -CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 566666554 444554333444444 66665544
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00011 Score=66.40 Aligned_cols=320 Identities=12% Similarity=-0.030 Sum_probs=176.0
Q ss_pred CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHH
Q 015370 68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERY 146 (408)
Q Consensus 68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 146 (408)
+-+.|...+.+-+.-. +++..-|..=..+|+..|++++|++=-.+-.+ +.|+ +..|+....++.-.|++++|+.-
T Consensus 17 d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 3345555555544332 33666677778888888888888765555554 4455 67888888888888999999888
Q ss_pred HhcCCCCCC-CHHHHHHHHHHHHcCCC------------------------------------------------HHHHH
Q 015370 147 FEGLPLSAK-TSETYTALLHLYAGAKW------------------------------------------------TEKAE 177 (408)
Q Consensus 147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~------------------------------------------------~~~A~ 177 (408)
|.+-....| |...++-|..++..... .+...
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m 172 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM 172 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence 887666543 45566666655511100 00000
Q ss_pred HHHHHHHhC--------C-------CCC----------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 178 ELFERVKQS--------N-------LSF----------------------NALMYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 178 ~~~~~m~~~--------~-------~~p----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
+..-.+... | ..| -..-...+.++..+..+++.|.+-+.....
T Consensus 173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e 252 (539)
T KOG0548|consen 173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE 252 (539)
T ss_pred HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 000000000 0 000 011233455555556666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH-------HHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 221 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN-------LVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 221 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
.. -+..-++..-.+|...|.+.++...-+...+. |- ....-|+. +..+|.+.++++.++. .+.+....
T Consensus 253 l~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~-~~~kaLte 327 (539)
T KOG0548|consen 253 LA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GR-ELRADYKLIAKALARLGNAYTKREDYEGAIK-YYQKALTE 327 (539)
T ss_pred Hh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH-HHHHHhhh
Confidence 43 23333444444566666666555555444442 11 11111222 2335555666666666 55554444
Q ss_pred cccCccchHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 015370 294 ITQRQWITYD-------------------------FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG 348 (408)
Q Consensus 294 ~~~~~~~~~~-------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 348 (408)
...|+..+-. .-...+.+.|++..|+..|.++....+. |...|..-.-+|.+.|
T Consensus 328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLG 406 (539)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHh
Confidence 3333321110 1133355667777777777777666422 5566777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 349 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 349 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
.+..|+.=.+..++.. ++....|..=..++....+++.|.+.|++.++.
T Consensus 407 ~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777666666543 344555555555566666777777777776663
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1e-05 Score=73.49 Aligned_cols=254 Identities=9% Similarity=-0.044 Sum_probs=184.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCC
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKW 172 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~ 172 (408)
....+.+.|+..+|.-+|+...+.. +-+...|..|.......++=..|+..+.+..+. +.|....-+|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 3445678899999999999998875 556789999999999999988888888876665 4578999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHH---------HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMM---------TLYMSVGQVEKVALVVEEIK-RKNVVPDIFTYNLWISSCAATLN 242 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li---------~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~ 242 (408)
-.+|++.++.-+....+ ..|...- ..+.....+....++|-++. ..+.++|......|.-.|.-.|+
T Consensus 369 q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999998654311 0000000 11222233455666666655 44544677777778778888999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 322 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 322 (408)
+++|...|+..... -|-|...||-|...++...+.++|+. .+.+..+-.+. -+.++..|.-.|...|.+++|...|
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIs-AY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAIS-AYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHH-HHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999883 45677889999999999999999999 89988776544 3556667888899999999999887
Q ss_pred HHH---HhccCC------CChhhHHHHHHHHHhcCCHHHHHHH
Q 015370 323 KSL---RMTKQK------MTSRNYICILSSYLMLGHLKEVGEI 356 (408)
Q Consensus 323 ~~m---~~~~~~------p~~~~~~~li~~~~~~g~~~~A~~~ 356 (408)
=.. .+.+.. ++...|..|=.++.-.++.|.+.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 643 333221 1223455554555555555544433
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=2e-05 Score=64.69 Aligned_cols=153 Identities=10% Similarity=-0.042 Sum_probs=115.0
Q ss_pred HHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 015370 128 ATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 206 (408)
Q Consensus 128 ~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 206 (408)
..+-..+...|+-+....+....... +.|....+.++....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 44556666677777777666664433 4567777778888888888888888888888775 778888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 207 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
++++|..-|.+..+.-.. +...++.+.-.+.-.|+++.|..++...... -.-+..+-..+.......|++++|..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 888888888888775332 4566777777777888888888888887763 23466667778888888888888887
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.00059 Score=61.93 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHH
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQI 321 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 321 (408)
.+...++++++.......|+. +|..+++.-.+..-++.|+. +|.+..+....+ ++..++++|.-|| .++..-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~-iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK-IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH-HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 445555566655543334433 47777777778888888888 888888776666 6777777877665 4677888888
Q ss_pred HHHHHhccCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 322 WKSLRMTKQKMTSRNY-ICILSSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 322 ~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
|+.=.+. -+|...| ...++-+.+.++-..|..+|++...++ ..|+ ...|..++.--..-|+...+.++-+++..
T Consensus 424 FeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~-l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV-LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8853332 3344444 357777888899999999999988873 4443 46899999888888999888888877654
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=3.1e-05 Score=63.69 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=66.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370 198 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277 (408)
Q Consensus 198 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 277 (408)
+-..+...|+-+....+......... -|.......+....+.|++..|...+++... .-++|+..|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 33334444444444444433332211 1223333344444444555555554444444 33444444555555555555
Q ss_pred chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370 278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 357 (408)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 357 (408)
+++.|.. -+.+..+-.+. +....|.|.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 149 r~~~Ar~-ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARR-AYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHH-HHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555444 34333332222 3334444444444445555555544444333211 2333333444444455555555544
Q ss_pred H
Q 015370 358 D 358 (408)
Q Consensus 358 ~ 358 (408)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=7.5e-05 Score=61.53 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=52.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 015370 165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA----AT 240 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~ 240 (408)
..|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.+- -+..|.+-|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34455555555555544411 1222222233334444555555555555542 13333333333322 23
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
+++..|.-+|++|.+ ..+|++.+.+-...++...|++++|.. +++....+
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~-lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAES-LLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHH-HHHHHHhc
Confidence 344555555555554 234555555555555555555555555 44444444
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=0.00012 Score=65.44 Aligned_cols=206 Identities=13% Similarity=0.054 Sum_probs=147.7
Q ss_pred hHHHHHHHhcCCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370 140 IHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215 (408)
Q Consensus 140 ~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 215 (408)
+.++...-+.++.. +|+...+...+.+......-..+-..+.+-.+.+ ....+--..-.+...|++++|++.+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHHH
Confidence 34444455555543 3567777777776665554444444444444322 2233333334455789999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295 (408)
Q Consensus 216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (408)
+.+...- +-|..........+.+.++..+|.+.++.+... .+......-.+..+|.+.|++.+|.. ++.+.....+
T Consensus 330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~-~L~~~~~~~p 405 (484)
T COG4783 330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR-ILNRYLFNDP 405 (484)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCC
Confidence 9988762 235556666678899999999999999999984 33446777889999999999999999 8887766654
Q ss_pred cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 015370 296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 373 (408)
Q Consensus 296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 373 (408)
. |...|..|..+|...|+..++..-.. .+|...|+++.|...+....+.. +++..+|
T Consensus 406 ~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~--~~~~~~~ 462 (484)
T COG4783 406 E-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV--KLGFPDW 462 (484)
T ss_pred C-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc--cCCcHHH
Confidence 4 88999999999999999988877654 34566799999999999888754 4455554
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=3.2e-05 Score=63.33 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH-HhcCC--HH
Q 015370 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY-AGLGN--KD 316 (408)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~ 316 (408)
.++.+++...++...+ .-+.+...|..+...|...|++++|.. .+.......+. +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~-a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALL-AYRQALQLRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 4555666666666555 235666677777777777777777777 66666555433 555666666543 45555 47
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH
Q 015370 317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 371 (408)
Q Consensus 317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 371 (408)
+|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+.. +|+..
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~--~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN--SPRVN 179 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcc
Confidence 777777777666433 45566666777777777777777777777654 34443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=4.7e-06 Score=64.54 Aligned_cols=94 Identities=10% Similarity=-0.041 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHc
Q 015370 91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAG 169 (408)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~ 169 (408)
+......+...|++++|.+.|+...... +.+...|..+..++.+.|++++|...|+...... .+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3344455555555666665555555542 3344555555555555555555555555544442 245555555555555
Q ss_pred CCCHHHHHHHHHHHHhC
Q 015370 170 AKWTEKAEELFERVKQS 186 (408)
Q Consensus 170 ~~~~~~A~~~~~~m~~~ 186 (408)
.|+.++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555544
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=2.6e-05 Score=75.69 Aligned_cols=183 Identities=9% Similarity=0.027 Sum_probs=124.7
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHH
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYT 161 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 161 (408)
.+.++..+..|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|+..+++.....| +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 4556777888888888888888888888888874 455 45666677888888888888888888777654 466777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++-+.|+.++|...|+...+. ..|....|+..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------
Confidence 77788888888888888888888743 334678888888888888888888888887764 2344555554443
Q ss_pred CHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcC
Q 015370 242 NIDQVKKFLDEMSCD---SGGSDDWVKYVNLVNIYITAS 277 (408)
Q Consensus 242 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~ 277 (408)
++..-..+++.+.-. .|.+....+...+|..|.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 333444455555432 123333344445555554443
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=5.7e-05 Score=61.89 Aligned_cols=119 Identities=8% Similarity=0.027 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 015370 170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AATLN--IDQV 246 (408)
Q Consensus 170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~--~~~a 246 (408)
.++.+++...++.....+ +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334444444444444433 334445555555555555555555555544443221 333344443332 33333 2445
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
.+++++..+. .+.+...+..+...+.+.|++++|.. .++++.+.
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIE-LWQKVLDL 173 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence 5555444442 22333444444444444444444444 44444333
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00017 Score=60.50 Aligned_cols=230 Identities=16% Similarity=0.111 Sum_probs=155.0
Q ss_pred CCChhhHHH-HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHH--HHHhhcChHHHHHHHhcCCCCCCCHHHHH
Q 015370 85 QATVSELRH-ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRID--LMTKVFGIHSGERYFEGLPLSAKTSETYT 161 (408)
Q Consensus 85 ~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 161 (408)
.|...-|.. -...+-+.+.+..|+.+...|... |....-..-+. ..-..+++..+..+.++++.. .+..+.+
T Consensus 74 ~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~i 148 (459)
T KOG4340|consen 74 HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQI 148 (459)
T ss_pred ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-Cccchhc
Confidence 344443322 344566778899999998888653 22222222222 224567888899999998852 4555666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-------------DI 227 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------------~~ 227 (408)
...-...+.|+++.|.+-|+...+- |..| ...||..+..| +.|+++.|++...+++++|++- |.
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 6666678999999999999997764 5544 67888776655 6789999999999998887541 21
Q ss_pred H--------HHHHHHH-------HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 228 F--------TYNLWIS-------SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 228 ~--------~~~~ll~-------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
. .-+.++. .+.+.|+++.|.+-+-+|.-+.....|+.|...+.-.-... ++-+..+ -+.-+..
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~-~p~~g~~-KLqFLL~ 304 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDA-RPTEGFE-KLQFLLQ 304 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccC-CccccHH-HHHHHHh
Confidence 1 1223333 45678999999999999987766677888776655544433 2333333 2333444
Q ss_pred hcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKS 324 (408)
Q Consensus 293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 324 (408)
..+ -...||..++-.||++.-++.|-.++.+
T Consensus 305 ~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 305 QNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 433 3457898999999999999999888764
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=0.00037 Score=71.78 Aligned_cols=270 Identities=10% Similarity=-0.018 Sum_probs=165.3
Q ss_pred HHHHHHHhhcChHHHHHHHhcCCCC----C----CC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhh
Q 015370 129 TRIDLMTKVFGIHSGERYFEGLPLS----A----KT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALM 194 (408)
Q Consensus 129 ~li~~~~~~g~~~~a~~~~~~~~~~----~----~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~ 194 (408)
.....+...|++++|..++...... + +. ......+...+...|++++|...+++....--..+ ..+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3444556778888888877654221 1 11 12223334556678999999999988776311112 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCC--C-CH
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEIKRK----NVV-PDIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGS--D-DW 263 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~--~-~~ 263 (408)
.+.+...+...|++++|...+++.... |.. +-..++..+...+...|++++|...+++.... .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 566667778899999999998887642 111 11234455566778899999999988775441 1211 1 22
Q ss_pred HHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc--C--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhH-
Q 015370 264 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQ--R--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNY- 337 (408)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~- 337 (408)
..+..+...+...|++++|.. .+.+....... + ....+..+...+...|+.++|.+.+........... ...+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQ-CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHH-HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334556667778899999988 66665442111 1 233444566677789999999998887754321111 1111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370 338 ----ICILSSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 338 ----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
...+..+...|+.+.|..++..........+. ...+..+..++...|++++|...+++....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11224445678999999998775432111110 112345677888899999999999987653
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=7.6e-05 Score=70.71 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=126.1
Q ss_pred CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCC--------CCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH
Q 015370 86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEF--------VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS 157 (408)
Q Consensus 86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 157 (408)
.+...|..+.+.|.+.++.+-|.-.+..|....+. .|+ .+=....-.....|.+++|+.+|.+-+.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 35566777888888877777776666666432211 122 2222233334567778888888776653
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhCC-----
Q 015370 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI----------KRKN----- 222 (408)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----------~~~g----- 222 (408)
|..|=..|...|.|++|+++-+.--...+ ..||..-...+-..++.+.|++.|++. ....
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 44455666777888888877654333222 245555555666667777777766542 1111
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc
Q 015370 223 ----VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ 298 (408)
Q Consensus 223 ----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 298 (408)
-..|...|.-....+-..|+.+.|+.++...++ |-++++..|-.|+.++|-+ +.++ ..|
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~-iA~e------sgd 966 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAAR-IAEE------SGD 966 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHH-HHHh------ccc
Confidence 122555666666666778888888888877665 2345555556666666666 3332 123
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 299 WITYDFLIILYAGLGNKDKIDQIWKSLR 326 (408)
Q Consensus 299 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 326 (408)
......|...|...|++.+|..+|.+.+
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444466666666666666666665543
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=6.7e-05 Score=73.81 Aligned_cols=230 Identities=12% Similarity=0.026 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370 124 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 202 (408)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 202 (408)
...+..|+..+...+++++|.++.+......|+ ...|-.+...+.+.++.+++..+ .++...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 456777777777778888887777765554444 33333333355555664444443 223333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370 203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 282 (408)
Q Consensus 203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 282 (408)
....++.-+..+...|...+. +...+..+..+|-+.|+.+++..+++++.+- . +.++.+.|.+...|... +.++|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHH
Confidence 334444444444445554322 4457788888999999999999999999984 3 77888899999999999 99999
Q ss_pred HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC-------------------CCChhhHHHHHHH
Q 015370 283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-------------------KMTSRNYICILSS 343 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------------~p~~~~~~~li~~ 343 (408)
.+ ++...... +...+++..+.++|.++....+ .--..++..+...
T Consensus 169 ~~-m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 169 IT-YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HH-HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 99 66655443 4445556666666665554321 1223344556677
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370 344 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 396 (408)
|-..++++++..+++.+.+.. +.|.....-++.+|. +.+.. ...|++.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 888899999999999998854 457777888888887 33333 3444443
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=0.00031 Score=63.02 Aligned_cols=190 Identities=8% Similarity=-0.053 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370 122 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 201 (408)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 201 (408)
|+...+...+.+......-..+..++.+..+. .-...+--..-.+...|+.++|+..++.+... .|-|+.-+......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR-GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc-cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 44455555555444333333333333222221 22223333334455679999999999998876 35677788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchh
Q 015370 202 YMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 280 (408)
Q Consensus 202 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 280 (408)
+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|+.+++.... ..+.++..|..|..+|...|+..
T Consensus 350 ~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchH
Confidence 99999999999999999985 455 45556677899999999999999999887 46889999999999999999999
Q ss_pred hhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH
Q 015370 281 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 337 (408)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 337 (408)
++.. +....|...|+++.|...+...++.. +++..++
T Consensus 426 ~a~~-------------------A~AE~~~~~G~~~~A~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 426 EALL-------------------ARAEGYALAGRLEQAIIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHH-------------------HHHHHHHhCCCHHHHHHHHHHHHHhc-cCCcHHH
Confidence 9988 34556788999999999998877653 4454443
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.47 E-value=3.3e-07 Score=51.73 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888899999999999999999999888888874
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=1.5e-05 Score=61.73 Aligned_cols=94 Identities=7% Similarity=-0.129 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370 127 YATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 205 (408)
Q Consensus 127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 205 (408)
+..+...+...|++++|...|+...... .+...|..+..++.+.|++++|...|++....+ +.+..++..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 4445566667777777777777655543 356666777777777777777777777776654 44666677777777777
Q ss_pred CCHHHHHHHHHHHHhC
Q 015370 206 GQVEKVALVVEEIKRK 221 (408)
Q Consensus 206 g~~~~a~~~~~~m~~~ 221 (408)
|++++|...|+.....
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777776653
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=8.5e-05 Score=72.21 Aligned_cols=216 Identities=11% Similarity=-0.001 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAE-ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 235 (408)
....+.+=.+.+.-|+.++|- +++++..+ ++..........+++.-....... ...+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 444555556667777777763 34444432 233333333334444433333333 3346888999999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 015370 236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 315 (408)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 315 (408)
...+.|.+++|..+++.+.+- .+.+......+...+.+.+++++|+. ..+......+. +....+.+..++...|++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~-~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRA-EIELYFSGGSS-SAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHH-HHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence 999999999999999999883 45566778889999999999999999 88888777654 667778888899999999
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015370 316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 395 (408)
Q Consensus 316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 395 (408)
++|.++|++....+. -+...+..+..++...|+.++|...|++..+.. .|...-|+..+. +...-..++++
T Consensus 171 ~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~------~~~~~~~~~~~ 241 (694)
T PRK15179 171 EQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLV------DLNADLAALRR 241 (694)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHH------HHHHHHHHHHH
Confidence 999999999988432 247788899999999999999999999998854 566676665543 33334455555
Q ss_pred HHh
Q 015370 396 LLQ 398 (408)
Q Consensus 396 m~~ 398 (408)
+.-
T Consensus 242 ~~~ 244 (694)
T PRK15179 242 LGV 244 (694)
T ss_pred cCc
Confidence 543
No 122
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00067 Score=66.05 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 236 (408)
..+|..+..+-.+.|.+.+|.+-|-+ .+ |+..|..+++...+.|.|++-.+++...+++.-.|... +.+|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik---ad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK---AD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh---cC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34555555555555555555544422 11 34555555555555555555555555444444433322 234555
Q ss_pred HHhcCCHHHHHH
Q 015370 237 CAATLNIDQVKK 248 (408)
Q Consensus 237 ~~~~g~~~~a~~ 248 (408)
|++.++..+.++
T Consensus 1176 yAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1176 YAKTNRLTELEE 1187 (1666)
T ss_pred HHHhchHHHHHH
Confidence 555555544433
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=5.8e-07 Score=50.68 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD 226 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 226 (408)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 124
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.37 E-value=6.5e-07 Score=50.12 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370 371 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403 (408)
Q Consensus 371 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 403 (408)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.36 E-value=8e-07 Score=49.73 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 225 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 225 (408)
+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=1.6e-05 Score=61.04 Aligned_cols=88 Identities=11% Similarity=0.025 Sum_probs=34.2
Q ss_pred HHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 015370 132 DLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 210 (408)
Q Consensus 132 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 210 (408)
..+...|++++|.+.|+.+... +.+...|..+...+.+.|++++|..+++.....+ +.+...+..+...+...|++++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPES 103 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3333344444444444333222 1233333444444444444444444444433332 2233333333444444444444
Q ss_pred HHHHHHHHHh
Q 015370 211 VALVVEEIKR 220 (408)
Q Consensus 211 a~~~~~~m~~ 220 (408)
|...|+...+
T Consensus 104 A~~~~~~al~ 113 (135)
T TIGR02552 104 ALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 127
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=0.00086 Score=63.43 Aligned_cols=129 Identities=15% Similarity=0.028 Sum_probs=106.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH
Q 015370 230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY 309 (408)
Q Consensus 230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 309 (408)
|......+.+.+..++|...+.+..+ ..+.....|......+...|..++|.+ .|.....-.+. ++....++...+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~-af~~Al~ldP~-hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE-AFLVALALDPD-HVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH-HHHHHHhcCCC-CcHHHHHHHHHH
Confidence 44555677888899999988888887 456777888888899999999999999 77666554433 677888999999
Q ss_pred HhcCCHHHHHH--HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 310 AGLGNKDKIDQ--IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 310 ~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
.+.|+..-|.. ++..+.+.+.. +...|-.+...+-+.|+.+.|-+.|+.....
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999888888 99998887643 7889999999999999999999999987654
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=4.4e-05 Score=68.70 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 015370 128 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 207 (408)
Q Consensus 128 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 207 (408)
..++..+...++++.|..+|+++....|+ ....+++.+...++-.+|.+++++..... +-|...+..-...+.+.++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 34555556667777777777777765554 33346666666777777777777766543 3455566666666777777
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 208 VEKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 208 ~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
++.|+++.+++... .|+. .+|..|..+|.+.|+++.|+..++.+..
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77777777777764 3443 4777777777777777777777766543
No 129
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.24 E-value=2.4e-05 Score=55.52 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVG--------QVEKVALVVEEIKRKNVVPDIFT 229 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~ 229 (408)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666666888888889999998888 888889998888887653 34567778888888888888888
Q ss_pred HHHHHHHHHh
Q 015370 230 YNLWISSCAA 239 (408)
Q Consensus 230 ~~~ll~~~~~ 239 (408)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=3.9e-05 Score=58.84 Aligned_cols=99 Identities=10% Similarity=-0.055 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370 262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 341 (408)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 341 (408)
+......+...+.+.|++++|.+ .+.......+ .+...|..+...+...|++++|...++...+.+ ..+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALK-LFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 34445566666777777777777 6666555432 255666666777777777777777777665543 22445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 015370 342 SSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
..+...|++++|...|++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6677777777777777776664
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0008 Score=57.92 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhcCCCCC
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA-----FSDVGLTEKANEFHMLLLQKNCAPT 404 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~ 404 (408)
.|+-.|.+.+++.+|..+.+++. ...|-......++.+ .......+-|.+.|+-.-+.+..-|
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred hheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 45666889999999999988743 223333322222211 1122345566666666555555444
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.16 E-value=3.8e-05 Score=69.44 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=99.0
Q ss_pred CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 015370 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 195 (408)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 195 (408)
.+.+......+++.+....+++.+..++-++...+ .-..+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 35566777778888888888888888877776652 12445568999999999999999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015370 196 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 240 (408)
Q Consensus 196 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 240 (408)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888877777788888878777765
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.15 E-value=0.0005 Score=64.64 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=82.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCch
Q 015370 200 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279 (408)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 279 (408)
.+.....+|.+|+.+++.++.+... .--|..+.+.|+..|+++.|.++|-+.-. ++-.|.+|.+.|++
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccH
Confidence 3444566777777777777765332 23466667778888888888888765322 34566788888888
Q ss_pred hhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
++|.+ +-.+ ..++......|-.-..-+-..|++.+|.++|-.+. .|+ ..|.+|-+.|..++.+++..+
T Consensus 808 ~da~k-la~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFK-LAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHH-HHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 88877 3322 23444444555555555566677777776664321 233 245566666666666666554
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.0018 Score=62.34 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=54.8
Q ss_pred hhcChHHHHHHHhcCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015370 136 KVFGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 214 (408)
Q Consensus 136 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 214 (408)
..+++..|.+-..++.+..||....-++ .-.+.+.|..++|..+++.....+.. |..|...+-..|...|+.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 4455555655555555444443221111 12234556666666555555544422 555666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370 215 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 245 (408)
Q Consensus 215 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 245 (408)
|++..+. -|+..-...+..+|.+.+++.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 6665553 3444444455555555555443
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.003 Score=52.37 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=158.2
Q ss_pred HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCH
Q 015370 95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWT 173 (408)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~ 173 (408)
++-+.-.|++..++..-+..... +-+...-.-+-++|...|.+..... +++.. .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchh
Confidence 34455567888777666555443 2233444445567777776654332 33332 13334444444444444444
Q ss_pred HH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 174 EK-AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 252 (408)
Q Consensus 174 ~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 252 (408)
++ ..++.+.+......-+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33455556555444444444455667889999999999887621 223333335566778889999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHH----cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 253 MSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 253 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
|.+- .+..+.+-|..++.+ .+.+.+|.- +|+++.++ .+|+..+.+....++...|++++|..++++...+
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfy-ifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFY-IFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHH-HHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9982 455666666666554 466888888 88887554 4568888888899999999999999999998877
Q ss_pred cCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 015370 329 KQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWKQS 363 (408)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 363 (408)
..+ ++.+...+|.+-...|.. +-..+.+.+++..
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 654 566666666655556654 4456666666654
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00014 Score=65.51 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235 (408)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 235 (408)
+-..-..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+...... -|........+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34556677888888899999999999999885 44 555688888888999999999999887533 35666666677
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Q 015370 236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 289 (408)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 289 (408)
.+.+.++++.|..+.+++.+. .|.+..+|..|..+|.+.|+++.|+. .+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALl-aLNs 293 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALL-ALNS 293 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHH-HHhc
Confidence 789999999999999999983 45667789999999999999999998 5554
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.0094 Score=57.68 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=142.9
Q ss_pred HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH--HHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHH
Q 015370 99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL--MTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEK 175 (408)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~ 175 (408)
...+++..|+.....+.+.. |+. .|...+.+ +.+.|+.++|..+++..... +.|..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34567888888888887753 332 22333333 36788888888888877655 3477888888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------CHHH
Q 015370 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------NIDQ 245 (408)
Q Consensus 176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~ 245 (408)
|..+|++..... |+......+..+|.+.+++.+-.+.--+|-+. ..-+.+.|=.+++.....- -..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 888888888764 56677777778888888776655544444332 2223444444555443321 1234
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHH-HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL-VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 324 (408)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 324 (408)
|...++.+.+..|-..+..-.......+...|++++|.. ++ ....+.....+...-+.-+..+...+++.+..++-.+
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~-~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE-FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 566666666654422222223344455566788888888 55 4444444444445555667777788888888888888
Q ss_pred HHhccC
Q 015370 325 LRMTKQ 330 (408)
Q Consensus 325 m~~~~~ 330 (408)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 887764
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00016 Score=56.19 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=9.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 015370 165 HLYAGAKWTEKAEELFERVKQS 186 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~ 186 (408)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0034 Score=51.70 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCCChhh-HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHH
Q 015370 84 NQATVSE-LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYT 161 (408)
Q Consensus 84 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 161 (408)
..++.++ |-.++-+....|+.+.|...++++..+ ++-+...-..-.-.+-..|++++|.++++.+....| |..++-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 4455544 455666667777888888888877765 322333322223344567778888888887776644 455665
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF-TYNLWISSCA-- 238 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~-- 238 (408)
-=+...-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|--.++++.-. .|... .+..+...+.
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHH
Confidence 5555555566666777777776665 4567788888888888888888888888877763 34333 3333333332
Q ss_pred -hcCCHHHHHHHHHHHhc
Q 015370 239 -ATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 239 -~~g~~~~a~~~~~~~~~ 255 (408)
...+.+.+.++|.+..+
T Consensus 202 gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 202 GGAENLELARKYYERALK 219 (289)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 23356667777777766
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.08 E-value=5e-06 Score=45.26 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQS 186 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (408)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00072 Score=64.43 Aligned_cols=135 Identities=15% Similarity=0.153 Sum_probs=71.4
Q ss_pred HHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-----------CCCHHHHHHHHHH
Q 015370 98 LRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-----------AKTSETYTALLHL 166 (408)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~ll~~ 166 (408)
|...|+.+.|.+-..-+++ ...|..+.+.|.+..+++-|.-.+-.|... .++ ..=....-.
T Consensus 738 yvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4455666666665555443 356666777777777666666555555432 011 111122222
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015370 167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 246 (408)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 246 (408)
....|.+++|+.+|.+.+..+ .|=..|...|.|++|+++-+.=-+-.+ ..||......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 345566677777776665532 233445566777777766543222212 13444444455555666666
Q ss_pred HHHHHH
Q 015370 247 KKFLDE 252 (408)
Q Consensus 247 ~~~~~~ 252 (408)
++.|++
T Consensus 878 leyyEK 883 (1416)
T KOG3617|consen 878 LEYYEK 883 (1416)
T ss_pred HHHHHh
Confidence 666665
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=5.2e-06 Score=45.19 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 401 (408)
+|++|+.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777776664
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=5.8e-05 Score=68.25 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015370 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQS--NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232 (408)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 232 (408)
.+......+++.+....+++++..++.+.... ....-..|.+++++.|.+.|..++++.+++.=...|+-||.++++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 46667777888888888999999999998875 2222345668999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 015370 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 276 (408)
Q Consensus 233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 276 (408)
+|+.+.+.|++..|.++...|..+ ....+..++...+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999998875 5666777776666666665
No 144
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.07 E-value=7.3e-05 Score=60.04 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=63.3
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------------
Q 015370 145 RYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV-------------- 205 (408)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------------- 205 (408)
..|+.......|..+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 34444433346677777777777643 67888888888899999888999999988887542
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 206 --GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 206 --g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
.+-+-|++++++|...|+.||..|+..+++.+.+.+
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 123445555555555555555555555555554443
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00025 Score=55.06 Aligned_cols=125 Identities=11% Similarity=0.070 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh---HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH----HHHH
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD---SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS----ETYT 161 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 161 (408)
..|..++..+ ..++...+.+.++.+.+.. +.++ ...-.+...+...|++++|...|+.+....||. ...-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455566665 4788888888899988864 3332 233345577888999999999999888765543 3445
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 218 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 218 (408)
.|...+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56788888999999999997754443 34557778888899999999999888753
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0045 Score=50.98 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 319 (408)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 319 (408)
.|++++|+++++.+.++ .+.|..++---+...-..|+..+|++ -+....+.... |...|.-+...|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk-~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIK-ELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHH
Confidence 44555555555555542 23344444444444444444444444 34444333322 4455555555555555555555
Q ss_pred HHHHHHHh
Q 015370 320 QIWKSLRM 327 (408)
Q Consensus 320 ~~~~~m~~ 327 (408)
-.++++.-
T Consensus 175 fClEE~ll 182 (289)
T KOG3060|consen 175 FCLEELLL 182 (289)
T ss_pred HHHHHHHH
Confidence 55555444
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.99 E-value=0.011 Score=56.14 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=92.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCH
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 173 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 173 (408)
.+.+......|.+|+.+++.+..+. .-..-|..+.+-|+..|+++.|.++|-+.. .++-.|.+|.+.|+|
T Consensus 738 aieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccH
Confidence 4445556678888888888887653 334557777788999999999999987654 466778899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015370 174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 251 (408)
Q Consensus 174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 251 (408)
+.|.++-++.... ...+..|-+-..-.-+.|++.+|+++|-.... |+. -|..|-+.|..+..+++.+
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHH
Confidence 9999988766543 23455666666666677777777776643321 332 2344555555555554444
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00017 Score=53.75 Aligned_cols=97 Identities=9% Similarity=-0.053 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC----HHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALL 164 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ll 164 (408)
++..+...+.+.|++++|.+.|..+.+..+-.+ ....+..+..++.+.|+++.|.+.|+.+....|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555556666666666666554320000 1223334445555555555555555544432221 23444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 015370 165 HLYAGAKWTEKAEELFERVKQS 186 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~ 186 (408)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.013 Score=53.58 Aligned_cols=314 Identities=10% Similarity=0.068 Sum_probs=182.8
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHH
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTAL 163 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 163 (408)
.+-|..+|+.||+-+... ..+++.+.++++... ++.++..|..-|..-.+..+++.++.+|.+-.....+...|...
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 577999999999988766 999999999999975 56778899999999999999999999999877666788899888
Q ss_pred HHHHHcC-CCHHH----HHHHHHH-HHhCCCCCC-hhhHHHHHHHH---------HhcCCHHHHHHHHHHHHhC------
Q 015370 164 LHLYAGA-KWTEK----AEELFER-VKQSNLSFN-ALMYNEMMTLY---------MSVGQVEKVALVVEEIKRK------ 221 (408)
Q Consensus 164 l~~~~~~-~~~~~----A~~~~~~-m~~~~~~p~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~------ 221 (408)
|+.--+. |+... ..+.|+- +.+.|+.+- ...|+..+..+ ..+.+++...++|+++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 8765443 22222 2223332 333443221 12233333221 1122333333344333221
Q ss_pred --------------------------------------------CCCCCHHH---------------HHHHHH-------
Q 015370 222 --------------------------------------------NVVPDIFT---------------YNLWIS------- 235 (408)
Q Consensus 222 --------------------------------------------g~~p~~~~---------------~~~ll~------- 235 (408)
|...+..+ |-.+|.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11000000 111110
Q ss_pred ---------------------HHH---------------------hcCC-------HHHHHHHHHHHhcCCCCCCCHHHH
Q 015370 236 ---------------------SCA---------------------ATLN-------IDQVKKFLDEMSCDSGGSDDWVKY 266 (408)
Q Consensus 236 ---------------------~~~---------------------~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~ 266 (408)
.+. ..|+ -+++..+++.... .-...+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 000 0000 1112222222111 0001111111
Q ss_pred HHHHHHHHH---cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHH
Q 015370 267 VNLVNIYIT---ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILS 342 (408)
Q Consensus 267 ~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 342 (408)
..+...--. .+..+.... .+.+........-..+|..+|..-.+...+..|..+|.+..+.+..+ ....+++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~-~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHE-IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHH-HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 111111000 011222333 33333333333334577788888888899999999999999998877 6666777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
-+| .++.+-|.++|+--.++. .-+...-..-+.-+...++-..|..+|++.+..++.||.
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 777 588999999999876653 223333455677778889889999999999888776653
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.97 E-value=0.009 Score=51.48 Aligned_cols=309 Identities=12% Similarity=0.014 Sum_probs=202.8
Q ss_pred CCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHH-HHHHHHHHHhhcChHHHHHHHhcCCCCCCC----H
Q 015370 83 GNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKT----S 157 (408)
Q Consensus 83 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~ 157 (408)
|.+.+-.++..-...|...|+-..|+.=+.+..+ .+||-.. -..-...+.+.|.++.|..=|+.+....|+ .
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ 143 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL 143 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence 3344445555556677788888888888888887 4677433 223346778999999999999888776542 1
Q ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370 158 ------------ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 225 (408)
Q Consensus 158 ------------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 225 (408)
......+..+...|+...|+.....+++.. +-|+..|..-..+|...|++..|..=++..-+..-.
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D- 221 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD- 221 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-
Confidence 122334556677899999999999998864 557888888889999999999998877766554332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH----HHHH---------HHHHHHcCchhhhHHHHHHHHHH
Q 015370 226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK----YVNL---------VNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
+..++--+-..+...|+.+.++...++..+- .||.-. |-.| +......+++.++.+ ..+...+
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle-~ge~vlk 297 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLE-AGEKVLK 297 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHh
Confidence 4555555667778889999988888888762 344322 2111 112344556666666 5555555
Q ss_pred hcccCccc---hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 015370 293 SITQRQWI---TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 368 (408)
Q Consensus 293 ~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 368 (408)
..+..... .+..+-.++...+++.+|++.-.+.... .|+ ..++.--..+|.-...++.|+.=|+...+.+ +.
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n--~s 373 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN--ES 373 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cc
Confidence 54442333 3444556667788999999988887765 444 6677777778888888888888888776643 11
Q ss_pred CHHH------------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 015370 369 DISA------------------CNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 406 (408)
Q Consensus 369 ~~~~------------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 406 (408)
|... |.. |-+-.++-.-.+....|++|.. .+.||..
T Consensus 374 n~~~reGle~Akrlkkqs~kRDYYK-ILGVkRnAsKqEI~KAYRKlAq-kWHPDNF 427 (504)
T KOG0624|consen 374 NTRAREGLERAKRLKKQSGKRDYYK-ILGVKRNASKQEITKAYRKLAQ-KWHPDNF 427 (504)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHH-HhhhcccccHHHHHHHHHHHHH-hcCCccc
Confidence 2221 221 2233444445566667777654 3667653
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00021 Score=50.82 Aligned_cols=82 Identities=10% Similarity=0.147 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhcCCCCCCCHH
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDIFTYNLWISSCAATL--------NIDQVKKFLDEMSCDSGGSDDWV 264 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 264 (408)
|-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334556667777999999999999999999 999999999999887643 24466788888887 48888888
Q ss_pred HHHHHHHHHHHc
Q 015370 265 KYVNLVNIYITA 276 (408)
Q Consensus 265 ~~~~li~~~~~~ 276 (408)
+|+.++..+.+.
T Consensus 106 tYnivl~~Llkg 117 (120)
T PF08579_consen 106 TYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHh
Confidence 888888877653
No 152
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.013 Score=53.44 Aligned_cols=294 Identities=9% Similarity=-0.019 Sum_probs=201.2
Q ss_pred HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCH
Q 015370 95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWT 173 (408)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 173 (408)
-++.+..|+++.|+.+|-...... +++...|+.-..+|+..|++++|++=-.+-....|+ ...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 456778899999999999998875 668889999999999999999998765555554566 67899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------------------------------------------
Q 015370 174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVG----------------------------------------------- 206 (408)
Q Consensus 174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----------------------------------------------- 206 (408)
++|+..|.+=++.. +-+...++-+..++.-..
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988875 445666666666652110
Q ss_pred -C---HHHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHH
Q 015370 207 -Q---VEKVALVVEE-----IKRKN-------VVP------------D----------IFTYNLWISSCAATLNIDQVKK 248 (408)
Q Consensus 207 -~---~~~a~~~~~~-----m~~~g-------~~p------------~----------~~~~~~ll~~~~~~g~~~~a~~ 248 (408)
+ +..+...+.. +...| ..| | ..-...+.++..+..+++.+.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 0 0001000000 00000 111 1 1123455566666777888888
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH-------HHHHHHHhcCCHHHHHHH
Q 015370 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD-------FLIILYAGLGNKDKIDQI 321 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~ 321 (408)
.+....+- . -+..-++....+|...|.+.++.. .-....+.+.. ...-|+ .+..+|.+.++++.+...
T Consensus 246 ~y~~a~el-~--~~it~~~n~aA~~~e~~~~~~c~~-~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 246 HYAKALEL-A--TDITYLNNIAAVYLERGKYAECIE-LCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHhH-h--hhhHHHHHHHHHHHhccHHHHhhc-chHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 88777763 2 344446677778888888887777 44444443322 112222 234466677889999999
Q ss_pred HHHHHhccCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370 322 WKSLRMTKQKMTSRNY-------------------------ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 376 (408)
Q Consensus 322 ~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 376 (408)
|.+.......|+..+= -.-...+.+.|++..|...+.++++.. +-|...|..-
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNR 398 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNR 398 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHH
Confidence 9887666555553320 111344778899999999999999875 5688999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 015370 377 LGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 377 i~~~~~~g~~~~a~~~~~~m~~ 398 (408)
..+|.+.|.+..|+.=.+..++
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999886666665
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00031 Score=49.46 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 239 (408)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++........ +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344455555566666666666555442 223345555555555556666666666555544321 23344555555555
Q ss_pred cCCHHHHHHHHHHHhc
Q 015370 240 TLNIDQVKKFLDEMSC 255 (408)
Q Consensus 240 ~g~~~~a~~~~~~~~~ 255 (408)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5556655555555443
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00027 Score=61.47 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH-HHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHH
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL-MTKVFGIHSGERYFEGLPLS-AKTSETYTALLHL 166 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~ 166 (408)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 357778888888888888888888887654 2233334333333 22345666688888876655 5677888888888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370 167 YAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRK 221 (408)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 221 (408)
+.+.++.+.|..+|++.... ++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888766 33333 47888888888888888888888877764
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00033 Score=49.29 Aligned_cols=94 Identities=21% Similarity=0.139 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370 302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 381 (408)
Q Consensus 302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 381 (408)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHH
Confidence 44566667777888888888887765532 233556667777777888888888888877643 334456777778888
Q ss_pred hcCChHHHHHHHHHHHh
Q 015370 382 DVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 382 ~~g~~~~a~~~~~~m~~ 398 (408)
..|+++.|...+++..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88888888888877765
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=5.5e-05 Score=52.51 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015370 312 LGNKDKIDQIWKSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 390 (408)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 390 (408)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..++++ .+.+ ..+....-.+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777766542 2333444467777777788888777776 3222 123334445567777778888877
Q ss_pred HHHHH
Q 015370 391 EFHML 395 (408)
Q Consensus 391 ~~~~~ 395 (408)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00082 Score=50.00 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 015370 304 FLIILYAGLGNKDKIDQIWKSLRMTKQK-M-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAF 380 (408)
Q Consensus 304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~ 380 (408)
.+...+.+.|++++|.+.|..+...... + ....+..+...+.+.|++++|...|+.+.......+ ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444455555555555544433211 0 012233344445555555555555555443221111 123344444445
Q ss_pred HhcCChHHHHHHHHHHHh
Q 015370 381 SDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 381 ~~~g~~~~a~~~~~~m~~ 398 (408)
.+.|++++|...++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 555555555555555544
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=4.6e-05 Score=52.93 Aligned_cols=82 Identities=11% Similarity=0.029 Sum_probs=52.4
Q ss_pred cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015370 101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELF 180 (408)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 180 (408)
.|+++.|+.+++++.+..+..++...+-.+..++.+.|++++|..+++.....+.+....-.+..++.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46788888888888876411123344444677788888888888888772211233455555577788888888888877
Q ss_pred HH
Q 015370 181 ER 182 (408)
Q Consensus 181 ~~ 182 (408)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.001 Score=57.94 Aligned_cols=128 Identities=14% Similarity=0.218 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL-YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 203 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 203 (408)
+|..++...-+.+..+.|..+|.+....+ .+..+|-..... |...++.+.|.++|+...+. ++.+...|..-++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 34444455555555555555555444332 122222222222 11123334455555554433 2334444444455555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDI---FTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
+.|+.+.|..+|++.... +.++. ..|...++-=.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555554433 21111 2444444444444455544444444444
No 160
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.74 E-value=0.0023 Score=62.46 Aligned_cols=184 Identities=13% Similarity=-0.037 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 206 GQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 206 g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
.+...|+..|-+..+. .|+ ...|..|...|+..-+...|...|+..-+ -...+......+...|+...+++.|..
T Consensus 472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHH
Confidence 3466666666555553 233 46788888888888888899999998876 234566778889999999999999998
Q ss_pred HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 285 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
+.+....+.....-...|-...-.|...++...+..-|+...+..++ |...|..+..+|...|++..|.++|.+...
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~-- 624 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL-- 624 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence 33332222222222334444555567788888888888876655432 666788899999999999999999988765
Q ss_pred CCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHh
Q 015370 365 TSDFDISACNR--LLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 365 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
..|+.. |.. ..-..+-.|++++|+..+...+.
T Consensus 625 -LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 625 -LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344432 222 22234567888888888877654
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.67 E-value=0.0011 Score=58.29 Aligned_cols=286 Identities=14% Similarity=0.050 Sum_probs=153.3
Q ss_pred HHHHhcccHHHHHHHHHHHHhccCCCCC----hHHHHHHHHHHHhhcChHHHHHHHhc-------CCCCCCCHHHHHHHH
Q 015370 96 KELRKSQRYKHALEISEWMVTHKEFVLS----DSDYATRIDLMTKVFGIHSGERYFEG-------LPLSAKTSETYTALL 164 (408)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~ll 164 (408)
.-+++.|+....+.+|+...+.| .-| ..+|..|.++|.-.+++++|+++... |-...-...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45789999999999999999987 444 34677888888889999999987542 111111233444455
Q ss_pred HHHHcCCCHHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370 165 HLYAGAKWTEKAEELFERV----KQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m----~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 239 (408)
+.+-..|.+++|.-.-.+- .+.|- .....++-.+...|...|+.-.... -.+.|-.|+.++-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~~--------- 169 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVTS--------- 169 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHHH---------
Confidence 5556667777765543322 12220 0123455556666665554211000 0011222222110
Q ss_pred cCCHHHHHHHHHHH---hcCCCC-CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH----Hhccc-CccchHHHHHHHHH
Q 015370 240 TLNIDQVKKFLDEM---SCDSGG-SDDWVKYVNLVNIYITASHLVNAESSTLVEAE----KSITQ-RQWITYDFLIILYA 310 (408)
Q Consensus 240 ~g~~~~a~~~~~~~---~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~~li~~~~ 310 (408)
.++.|.++|.+- ....|. -.-...|..|.+.|.-.|+++.|+. .-+.-. +-+.. .....+..|..++.
T Consensus 170 --al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~-~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 170 --ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH-FHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH-HHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 122222222211 000010 0112345566666666777777765 211110 11111 12345666777777
Q ss_pred hcCCHHHHHHHHHHHHhc----cC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHH
Q 015370 311 GLGNKDKIDQIWKSLRMT----KQ-KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFS 381 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~ 381 (408)
-.|+++.|.+.|+.-... |- .....+.-+|...|.-..++++|+.++.+-.. .+...-....|-+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 778888887777653322 21 22333455677777777778888887765322 1111224556667888888
Q ss_pred hcCChHHHHHHHHHHHhc
Q 015370 382 DVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~ 399 (408)
..|..++|+.+.+.-++.
T Consensus 327 alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 888888888776665543
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0036 Score=48.13 Aligned_cols=95 Identities=8% Similarity=-0.088 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 239 (408)
.-.+..-+...|++++|.++|+-+...+ +-+..-|-.|..++-..|++++|...|.......+ -|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344444555666666666666665554 23445555666666666666666666666665543 245555556666666
Q ss_pred cCCHHHHHHHHHHHhcC
Q 015370 240 TLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 240 ~g~~~~a~~~~~~~~~~ 256 (408)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666665553
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00034 Score=58.91 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHH
Q 015370 273 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLK 351 (408)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 351 (408)
+.+.+++.+|+. .+.+..+-.+. |.+.|..=..+|.+.|.++.|++-.+..... .| -..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~-kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVD-KYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHH-HHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 445555666666 55555444333 5555555556666666666665555444332 22 2334555666666666666
Q ss_pred HHHHHHHHHHh
Q 015370 352 EVGEIIDQWKQ 362 (408)
Q Consensus 352 ~A~~~~~~~~~ 362 (408)
+|.+.|++..+
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 66666655554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0011 Score=59.91 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=53.3
Q ss_pred HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCH
Q 015370 95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWT 173 (408)
Q Consensus 95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 173 (408)
...+...|++++|++.|++..+.. +-+...|..+..++.+.|++++|+..+++.....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 444555666666666666666643 33445555555666666666666666665554433 455566666666666666
Q ss_pred HHHHHHHHHHHhC
Q 015370 174 EKAEELFERVKQS 186 (408)
Q Consensus 174 ~~A~~~~~~m~~~ 186 (408)
++|...|++.+..
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0042 Score=49.79 Aligned_cols=85 Identities=14% Similarity=-0.033 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
...+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...+++....... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 44555555555666666666666665554321111 245555566666666666666666665553211 233444444
Q ss_pred HHHHhcCC
Q 015370 235 SSCAATLN 242 (408)
Q Consensus 235 ~~~~~~g~ 242 (408)
..+...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 44544444
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.0082 Score=58.79 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370 104 YKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFER 182 (408)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 182 (408)
...++..|-+..... ..-...|..|...|+...+...|.+.|+...+. ..+...+..+.+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666655555432 222467888999998888889999999887765 35688888999999999999999988433
Q ss_pred HHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 015370 183 VKQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD 261 (408)
Q Consensus 183 m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (408)
.-+... ..-...|....-.|.+.++..+|..-|+...+..++ |...|..+..+|...|++..|.++|.+...- -|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 333210 001123334445566778888888888887775443 6778888888888888888888888777652 122
Q ss_pred CHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Q 015370 262 DWVKYVNLVNIYITASHLVNAESSTLVEAE 291 (408)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 291 (408)
+...---....-+..|.+++|+. .+..+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald-~l~~ii 657 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALD-ALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence 33322233344566777777777 555443
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0037 Score=59.06 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
..|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+ .+.+....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAAD-AYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhc
Confidence 34444433333445555555555555442 2344445555555555555555555 44444433
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0014 Score=59.19 Aligned_cols=104 Identities=11% Similarity=-0.021 Sum_probs=83.7
Q ss_pred HHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 015370 131 IDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 209 (408)
Q Consensus 131 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 209 (408)
...+...|++++|+..|++..... .+...|..+..+|.+.|++++|+..+++.+... +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 455677899999999999887764 467888889999999999999999999998875 456778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370 210 KVALVVEEIKRKNVVPDIFTYNLWISSC 237 (408)
Q Consensus 210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 237 (408)
+|...|++..+. .|+......++..+
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999999875 34544444444433
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0043 Score=49.49 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 193 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 193 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
..|..+...+...|++++|+..|+........| ...++..+...+...|++++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555554332111 123444455555555555555555555544
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0045 Score=49.63 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 015370 125 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 200 (408)
Q Consensus 125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 200 (408)
..+..+...+...|++++|...|++.....++ ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34555556666667777777666665433221 3566777777777777777777777777653 234556666666
Q ss_pred HHHhcCCHHHHH
Q 015370 201 LYMSVGQVEKVA 212 (408)
Q Consensus 201 ~~~~~g~~~~a~ 212 (408)
.+...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666666644433
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00042 Score=45.73 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=49.5
Q ss_pred HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370 99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALL 164 (408)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll 164 (408)
.+.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+....|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 46788999999999988864 44677777888999999999999999998888777755555443
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.017 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 015370 160 YTALLHLYAGAKWTEKAEELFERV 183 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m 183 (408)
|....+.|-..|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 444455666666677666666654
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.023 Score=49.63 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHH
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSD-DWVK 265 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~ 265 (408)
|......|-..|++++|.+.|...... +-..+ ...|.....+| +..++++|.+.+++..+- .|-+. -...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 334444555556666666655544311 11101 12222223333 333666666666554331 11111 1223
Q ss_pred HHHHHHHHHHc-CchhhhHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----Ch
Q 015370 266 YVNLVNIYITA-SHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-----TS 334 (408)
Q Consensus 266 ~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~ 334 (408)
+..+...|-.. |++++|.+ .+.+..+--...+ ..++..+...+.+.|++++|.++|++....-... +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~-~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIE-YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 45555666666 77777777 6666554322111 2345566777778888888888887765543221 11
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 335 R-NYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 335 ~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
. .|...+-++...||...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 1223344555667888888888877654
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.012 Score=55.76 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=88.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC--------chhhhHHHHHH
Q 015370 222 NVVPDIFTYNLWISSCAATL-----NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS--------HLVNAESSTLV 288 (408)
Q Consensus 222 g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~ 288 (408)
+...|...|...+++..... +.+.|..+|++..+. .+.....|..+..+|.... +...+.+ ...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~-~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST-ELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH-HHH
Confidence 34557778888887754322 266888888888773 3334445555444443321 1222222 222
Q ss_pred HHHHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 289 EAEKS-ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 289 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
..... ....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22221 123344667777666667889999999999877764 677788888888999999999999998887754
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.47 E-value=0.0043 Score=47.71 Aligned_cols=96 Identities=5% Similarity=-0.114 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370 265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 344 (408)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 344 (408)
..-.+..-+...|++++|.+ +|+.+..-. +.+...|-.|..++-..|++++|++.|.......+. |+..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~-~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAAR-LFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34445555566666777766 555443332 235555666666666666777777766665555432 455555666666
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 015370 345 LMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~ 363 (408)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6667777776666666554
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.0005 Score=44.88 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 341 LSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
...+.+.|++++|...|++.++.. +-+...|..+..++...|++++|..+|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566677777777777776643 23556666666777777777777777777665
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.023 Score=47.27 Aligned_cols=134 Identities=10% Similarity=0.088 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----
Q 015370 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS---- 235 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---- 235 (408)
.+.++.++...|++.-...++.+.++..-+.++.....|++.-.+.|+.+.|...|+...+..-+.|..+++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555555555555555555554444555555555555555666555555555443333333333333322
Q ss_pred -HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc
Q 015370 236 -SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 296 (408)
Q Consensus 236 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 296 (408)
.+.-.+++..|...+.++... .+-++...|.-.-+..-.|+..+|.+ .++.+....+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK-~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALK-QLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHH-HHHHHhccCCc
Confidence 223344455555555544442 12233333332233333455555555 55555444433
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0046 Score=49.35 Aligned_cols=64 Identities=14% Similarity=-0.098 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
..|..+...+...|++++|...|++.......++ ...++..+...|...|++++|.. .++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~-~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE-YYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 3445555555566666666666666654211111 12345566666666666666666 5555443
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0023 Score=51.67 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------
Q 015370 177 EELFERVKQSNLSFNALMYNEMMTLYMS-----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL---------- 241 (408)
Q Consensus 177 ~~~~~~m~~~~~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 241 (408)
...|+..... ..|-.+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445554222 2467888888888875 4778888888999999999999999999999875421
Q ss_pred ------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCch
Q 015370 242 ------NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 279 (408)
Q Consensus 242 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 279 (408)
+-+-|++++++|.. +|+-||..++..+++.+.+.+..
T Consensus 112 F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred hccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 24567777777777 47777777777777777666653
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.075 Score=46.99 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370 266 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 345 (408)
Q Consensus 266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 345 (408)
.+..+.-+...|+...|.+ +.+...-|+..-|-.-+.+++..++|++..++-.. +-.+.-|...+.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~k-----l~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEK-----LKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHH-----HHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444555556666666555 33333445666666666777777776666654321 113356666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015370 346 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 392 (408)
Q Consensus 346 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 392 (408)
+.|+..+|..++.++ + + ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~------~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC------C-h----HHHHHHHHHCCCHHHHHHH
Confidence 667666666666651 1 1 2234555666666665443
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.16 Score=48.67 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=153.3
Q ss_pred HcCCCCChhhHHH-----HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcC---hHHHHHHHhcCCC
Q 015370 81 SEGNQATVSELRH-----ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFG---IHSGERYFEGLPL 152 (408)
Q Consensus 81 ~~g~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~ 152 (408)
+-|++.+..-|.. +|+-+...+.+..|+++-.++...- .-....|.....-+.+..+ -+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 4567777766654 6777778888888888887775432 1114555555555544422 2223333333332
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------
Q 015370 153 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLS----FNALMYNEMMTLYMSVGQVEKVALVVEEIKRK------- 221 (408)
Q Consensus 153 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 221 (408)
.-....+|..+.+-.-.+|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+....++-++..+
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2234556666666666677777776666532222100 01122333333344444444433333332221
Q ss_pred -----------------------------------------------------CCCCCHHHHHHHHHHHHhcCC------
Q 015370 222 -----------------------------------------------------NVVPDIFTYNLWISSCAATLN------ 242 (408)
Q Consensus 222 -----------------------------------------------------g~~p~~~~~~~ll~~~~~~g~------ 242 (408)
|..|+ .....+++++...
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 00111 1111122222111
Q ss_pred ----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370 243 ----IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 318 (408)
Q Consensus 243 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 318 (408)
..+-..+.+.+..+.+..-...+.+--+..+...|+..+|.+ +.....-||-..|-.=+.+++..+++++.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q-----l~~~FkipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ-----LKSDFKIPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH-----HHHhcCCcchhhHHHHHHHHHhhhhHHHH
Confidence 111222333333333333333344455556666777777776 34445566777777777788888888877
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015370 319 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 393 (408)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 393 (408)
+++-+.+ + .+.-|...+.+|.+.|+.++|.+++.+. .+.. -.+.+|.+.|++.+|.++-
T Consensus 735 ekfAksk-----k-sPIGy~PFVe~c~~~~n~~EA~KYiprv------~~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 735 EKFAKSK-----K-SPIGYLPFVEACLKQGNKDEAKKYIPRV------GGLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhcc-----C-CCCCchhHHHHHHhcccHHHHhhhhhcc------CChH----HHHHHHHHhccHHHHHHHH
Confidence 7765543 2 2556777888888999999998888763 1111 4677788888888776543
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.0041 Score=57.91 Aligned_cols=218 Identities=11% Similarity=0.105 Sum_probs=120.3
Q ss_pred HHHHcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHH
Q 015370 165 HLYAGAKW--TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV----PDIFTYNLWISSCA 238 (408)
Q Consensus 165 ~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ll~~~~ 238 (408)
.+|.+.++ +-+...-+++++++|-.|+.... ...++-.|++.+|-++|.+--..+-. .|...|. ...-+.
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~ 681 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFL 681 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHh
Confidence 44444443 22334445667777766775543 34455567777777776543221100 0111111 123344
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHH--------HHHHHHHhcccCccchHHHHHHHHH
Q 015370 239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS--------TLVEAEKSITQRQWITYDFLIILYA 310 (408)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~li~~~~ 310 (408)
..|..++-..+.++=-+ ..-+..--.+...++...|+.++|..+ ++-++..+....+..+...+..-+.
T Consensus 682 ~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRAD---WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK 758 (1081)
T ss_pred hcCChHHHHHHHHHHHH---HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence 45554444433332111 001111112445667777888877763 1222223333334455555555566
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH-----------HHHHHHHH
Q 015370 311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS-----------ACNRLLGA 379 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~li~~ 379 (408)
+...+..|.++|..|-. ...+++.....+++++|..+-++.-+ ..||+. -|...-.+
T Consensus 759 ~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHHHHHHH
Confidence 67778888888876632 23577888889999999998887543 234432 24445678
Q ss_pred HHhcCChHHHHHHHHHHHhcCC
Q 015370 380 FSDVGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~g~ 401 (408)
|.++|+..+|..+++++....+
T Consensus 827 fhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhhhh
Confidence 8999999999999998876543
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.025 Score=41.89 Aligned_cols=85 Identities=12% Similarity=-0.075 Sum_probs=38.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHc
Q 015370 200 TLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG-SDDWVKYVNLVNIYITA 276 (408)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 276 (408)
.++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..++++......- +.+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555554432 122333344455555555555555555442110 00122222233344555
Q ss_pred CchhhhHH
Q 015370 277 SHLVNAES 284 (408)
Q Consensus 277 ~~~~~a~~ 284 (408)
|+.++|.+
T Consensus 89 gr~~eAl~ 96 (120)
T PF12688_consen 89 GRPKEALE 96 (120)
T ss_pred CCHHHHHH
Confidence 55555555
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.0012 Score=43.63 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 015370 334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-LTEKANEFHMLLLQ 398 (408)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 398 (408)
...|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4566677777777888888888888877764 346667777777788887 67888888777765
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.0015 Score=42.56 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=34.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666654 33555666666666666666666666666654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.0011 Score=43.74 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=27.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 221 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 221 (408)
+.|++++|+++|+++.... |-+...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555443 224455555555555555555555555555543
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.12 Score=45.75 Aligned_cols=110 Identities=17% Similarity=0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHH
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 307 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 307 (408)
.+.+..|.-+...|+...|.++-++. .+ |+..-|-..+.+++..+++++-.+ +. .. +.++..|.-++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~-fa----~s--kKsPIGyepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEK-FA----KS--KKSPIGYEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHH-HH----hC--CCCCCChHHHHH
Confidence 34555566677788888887775554 33 788889999999999999998777 32 22 335688999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 308 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
.|.+.|+..+|..+..+ .++..-+..|.+.|++.+|.+.--+
T Consensus 246 ~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998875 2235678889999999999887554
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0019 Score=42.68 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKR 220 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 220 (408)
..+|..+...+...|++++|+..|++..+.+ +-+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666655553 334555666666666666 46666666655543
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.041 Score=40.73 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLWISSC 237 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~ 237 (408)
.+..++-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..++++.......+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778999999999999998886554 3356677788888999999999999887653210 112222233466
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370 238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 274 (408)
Q Consensus 238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 274 (408)
...|+.++|.+.+-.... ++...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 778999998887766544 23335555555554
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.12 Score=44.01 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY---NEMMTLYMSVGQVEKVALVVEEIKRKN 222 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g 222 (408)
.....+.+.|++++|.+.|+++.... |-+..+- -.+..++.+.+++++|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34444555677777777777777653 1112221 344566677777777777777777654
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.18 E-value=0.12 Score=43.93 Aligned_cols=186 Identities=10% Similarity=0.046 Sum_probs=113.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 015370 191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY---NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 267 (408)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (408)
+...+-.....+...|++++|.+.|+.+...-..+ ...- -.+..++.+.+++++|...+++..+...-.|+.. |.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HH
Confidence 33444445555677899999999999998864433 2222 3455677889999999999999888644444432 33
Q ss_pred HHHHHHHH--cC---------------ch---hhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 268 NLVNIYIT--AS---------------HL---VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 327 (408)
Q Consensus 268 ~li~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 327 (408)
....+.+. .+ +. .+|.. .+..++.-|-...-..+|...+..++.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~----------------~~~~li~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR----------------DFSKLVRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH----------------HHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 33333321 11 01 11222 333444444444445555554444332
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 328 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 328 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
. .-. .--.+.+-|.+.|.+..|..-++.+++.-...| .......++.+|...|..++|..+...+..
T Consensus 173 ~---la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 173 R---LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred H---HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1 011 111466778899999999999999987542222 334566788999999999999988776643
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.12 E-value=0.0091 Score=44.63 Aligned_cols=58 Identities=14% Similarity=-0.065 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370 221 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278 (408)
Q Consensus 221 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (408)
....|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-....-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 3466788888888888888888888888888887777777777777777775544433
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.1 Score=41.25 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 015370 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYN 231 (408)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~ 231 (408)
|++.---.|.+++...|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+.+ -.||. --
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 55555556666666666666666666666654444455666666666666666666666666665542 22332 23
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Q 015370 232 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE 291 (408)
Q Consensus 232 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 291 (408)
.+.+.+...|++++|+.-|+..... -|+...-.-....+.+.|+.+++.. -+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a-q~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA-QYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH-HHHHHH
Confidence 3445666666676677666666653 3444443344445556665555554 343333
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.0024 Score=49.63 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 396 (408)
.++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445555566666666666665543 335555666666666666666666665554
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.014 Score=49.56 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=40.0
Q ss_pred HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHH
Q 015370 99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAE 177 (408)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~ 177 (408)
.+.+++.+|+..|.+.++.. +-|..-|..-..+|++.|.++.|++=.+......| -..+|..|-.+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 34445555555555555431 23334444444555555555555444444333222 2444555555555555555555
Q ss_pred HHHHHHHh
Q 015370 178 ELFERVKQ 185 (408)
Q Consensus 178 ~~~~~m~~ 185 (408)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55555444
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.98 E-value=0.027 Score=48.23 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 015370 310 AGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVG 384 (408)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 384 (408)
.+.|++++|...|+.+.+.. |+. ..+-.+...|...|++++|...|+.+.+.....| ....+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33455555555555554432 221 2333445555555555555555555544321111 1222333344444555
Q ss_pred ChHHHHHHHHHHHh
Q 015370 385 LTEKANEFHMLLLQ 398 (408)
Q Consensus 385 ~~~~a~~~~~~m~~ 398 (408)
+.++|..+|+++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0033 Score=42.02 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=32.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 307 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
..|.+.+++++|.++++++...++. +...+.....++.+.|++++|.+.|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455566666666666666555322 34444455556666666666666666666543
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.94 E-value=0.07 Score=44.03 Aligned_cols=185 Identities=9% Similarity=-0.031 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC--HHHHHHHH
Q 015370 88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT--SETYTALL 164 (408)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ll 164 (408)
...+......+...|++.+|.+.|+.+....+..|- ....-.++.++-+.|+++.|...++++....|+ ...+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 344455666777889999999999999876422222 344556677888888888888888876655333 11222222
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 165 HLYAGAKWTEKAEELFERVKQSNLSF---NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
.+.+......... ....+... -...+..++.-|=...-..+|...+..+... .-..- -.+.+-|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcc
Confidence 2222111111110 00000000 0123444444444455555555555554432 01111 12455677778
Q ss_pred CHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHcCchhhhH
Q 015370 242 NIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAE 283 (408)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~ 283 (408)
.+..|..-++.+.++. +.+. .....++.+|.+.|..+.+.
T Consensus 156 ~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888887777777742 2222 22455666677777666443
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.89 E-value=0.28 Score=43.46 Aligned_cols=293 Identities=12% Similarity=0.034 Sum_probs=166.9
Q ss_pred HHHHHHHHH--hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH--HHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHH
Q 015370 91 LRHILKELR--KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL--MTKVFGIHSGERYFEGLPLSAKT-SETYTALLH 165 (408)
Q Consensus 91 ~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~ 165 (408)
|-.|-.++. -.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+-|...+.. .--...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 334444443 346777776666655432 45565555555543 34568888888888888763211 112233333
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHh---
Q 015370 166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIF--TYNLWISSCAA--- 239 (408)
Q Consensus 166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~--- 239 (408)
.-.+.|..+.|.+.-++.-..- +--...+...+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 4456677887877777766543 2234677888888888888888888887766433 444432 22233332211
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370 240 TLNIDQVKKFLDEMSCDSGGSDDWVK-YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 318 (408)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 318 (408)
..+...|...-.+..+ +.|+..- -.....++.+.|+..++-. +++.+-+..+.|+.. ++..+.+.|+. +
T Consensus 242 dadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~-ilE~aWK~ePHP~ia----~lY~~ar~gdt--a 311 (531)
T COG3898 242 DADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSK-ILETAWKAEPHPDIA----LLYVRARSGDT--A 311 (531)
T ss_pred cCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhh-HHHHHHhcCCChHHH----HHHHHhcCCCc--H
Confidence 2345555555444433 2333322 2245567788888888888 888887777776532 22333445543 3
Q ss_pred HHHHHHHHhc-cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 015370 319 DQIWKSLRMT-KQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD-VGLTEKANEFHML 395 (408)
Q Consensus 319 ~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~ 395 (408)
..-+++..+. ..+| +..+-..+..+-...|++..|..--+...+ ..|....|..|.+.-.. .|+-.++...+-+
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3223222111 1234 344555566777777887777666655554 34666667655554433 4777777777777
Q ss_pred HHhc
Q 015370 396 LLQK 399 (408)
Q Consensus 396 m~~~ 399 (408)
.++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 6654
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.87 E-value=0.0078 Score=46.71 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHH
Q 015370 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK-----RKNVVPDIFTY 230 (408)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~ 230 (408)
.+...++..+...|++++|.++.+.+.... |-|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566777778888888888888888775 5577788888888888888888888888764 34777776554
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.031 Score=46.49 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHH
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 307 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 307 (408)
..-+++++.+...|.+.-....++++.+. ..+.++.....|.+.-.+.|+.+.|.. .++++.+.....|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~-yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEK-YFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhhhhccchhHHHH
Confidence 44566777777888999999999999984 556788888899999999999999999 9999988777777777766543
Q ss_pred -----HHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 308 -----LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 308 -----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
.|...+++..|...+.+....... |+...|.-.-+..-.|+..+|.+.++.|+.. .|...+-++++-
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~es~~~ 327 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHESVLF 327 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhhhHHH
Confidence 345567888888888777655422 4444443333334468999999999999874 456655555443
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.051 Score=46.34 Aligned_cols=105 Identities=9% Similarity=-0.008 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC
Q 015370 150 LPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG---QVEKVALVVEEIKRKNVVPD 226 (408)
Q Consensus 150 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~ 226 (408)
+..++.|...|-.|...|...|+++.|...|.+..+.. +++...+..+..++.... .-.++..+|+++...... |
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ 226 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-N 226 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-c
Confidence 44445688999999999999999999999999988764 567777777777765443 456888999999886443 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370 227 IFTYNLWISSCAATLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 227 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 256 (408)
..+...+...+...|++.+|...|+.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 667777777888999999999999999883
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.018 Score=43.01 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=46.9
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370 328 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 383 (408)
Q Consensus 328 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (408)
....|+..+..+++.+|+..|++..|+++++...+.-.++-+..+|..|+.-+...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 34578888999999999999999999999999988765777788999999766554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.79 E-value=0.018 Score=49.30 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTY 230 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~ 230 (408)
...|...+..+.+.|++++|...|+.+...- |+. .++--+...|...|++++|...|+.+...-.. .....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4455655555566788888888888887753 332 46677778888888888888888888754211 123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370 231 NLWISSCAATLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 231 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 256 (408)
-.+...+...|+.++|..+|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556677788888888888888774
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.71 E-value=0.0054 Score=41.66 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 336 NYICILSSYLMLGHLKEVGEIIDQWKQS----ATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
+|+.+...|...|++++|+..|++..+. |...|+ ..++..+..+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555666666666666555431 111111 3455566666666666666666666554
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.71 E-value=0.018 Score=48.41 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=80.5
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc------------
Q 015370 143 GERYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV------------ 205 (408)
Q Consensus 143 a~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------------ 205 (408)
.+..|........|..+|-+.+..+... +.++-.-..+..|.+-|+.-|..+|+.|++.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3445555554446677777777666543 56777777888899999999999999998887553
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 015370 206 ----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID-QVKKFLDEM 253 (408)
Q Consensus 206 ----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~ 253 (408)
.+-+-+.+++++|...|+.||..+-..+++++.+.+-.- +..+..-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234568889999999999999999999999998877542 333444444
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.012 Score=39.26 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=36.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
..|.+.+++++|.++++++...+ +.+...|.....++.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45566777777777777777653 33555666666677777777777777777765
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.073 Score=45.43 Aligned_cols=127 Identities=12% Similarity=-0.000 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT---LNIDQVKKF 249 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~ 249 (408)
.+....-++.-...+ |-|...|-.|..+|...|+++.|..-|....+.-. ++...+..+..++... ..-.++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444444444444 56899999999999999999999999999887522 3555666666655443 235689999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHH
Q 015370 250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 306 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 306 (408)
|+++.. ..+.++.+..-|...+...|++.+|.. .++.|.+..+..+ .+..+|
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~-~Wq~lL~~lp~~~--~rr~~i 267 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAA-AWQMLLDLLPADD--PRRSLI 267 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCCCCC--chHHHH
Confidence 999998 456788888889999999999999999 8999988765533 344444
No 209
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.67 E-value=0.16 Score=37.58 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370 334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 401 (408)
.......++.+...|+-+.-.++..++.+.+ .+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344556666677777777777777766533 45666666677777777777777777777777665
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.57 E-value=0.27 Score=38.92 Aligned_cols=103 Identities=8% Similarity=-0.054 Sum_probs=48.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 015370 190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 269 (408)
Q Consensus 190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 269 (408)
|+...--.|..+....|++.+|...|++...--..-|....-.+.++....+++..|...++++.+...---++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445555555555555555555555443333344444445555555555555555555554421111111122244
Q ss_pred HHHHHHcCchhhhHHHHHHHHHHh
Q 015370 270 VNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 270 i~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
...|...|...+|.. .|+.....
T Consensus 167 aR~laa~g~~a~Aes-afe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAES-AFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHH-HHHHHHHh
Confidence 445555555555555 44444443
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.57 E-value=0.34 Score=39.96 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 166 LYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 166 ~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
.+...|++++|.+.|+++...- -+--..+.-.++.++.+.|++++|...+++..+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555431 011122334445555555555555555555544
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.56 E-value=0.011 Score=40.15 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 158 ETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 219 (408)
.+|+.+...|...|++++|+..|++..+. | -.|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666666666666666554422 1 0111 3355555555666666666666555543
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.47 Score=45.35 Aligned_cols=85 Identities=8% Similarity=-0.008 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH-H
Q 015370 298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR-L 376 (408)
Q Consensus 298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l 376 (408)
+....-.+..++.+.|.-++|.+.|-+- + .| ...+..|...+++.+|.++-++.. -|.+.+.-+ -
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~-----l~qv~tliak~ 916 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQ 916 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHH
Confidence 4455556777777777777777665321 1 12 135667777777888877766532 234433211 1
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 015370 377 LGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 377 i~~~~~~g~~~~a~~~~~~m 396 (408)
..-+...++.-+|.+..++.
T Consensus 917 aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhc
Confidence 11233456666666665554
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.19 Score=48.77 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370 124 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 201 (408)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 201 (408)
......-++.+.+...++.|..+-+.-... ++ ........+-+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 345566788888888999999886655432 21 334444556667889999999988776654 222 234566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370 202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 281 (408)
Q Consensus 202 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 281 (408)
|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+ +...-|. ...+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~---e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDV---ETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeH---HHHHHHHHHhChHHH
Confidence 66777788888889999999986 667778899999999999998888877663 2222233 367778888888888
Q ss_pred hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 325 (408)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 325 (408)
|.. +-.... .+... +--.+-..+++++|++.++.|
T Consensus 482 a~~-LA~k~~-----~he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AEL-LATKFK-----KHEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHH-HHHHhc-----cCHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 877 333221 12222 333346788999999998865
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.65 Score=41.61 Aligned_cols=258 Identities=12% Similarity=-0.020 Sum_probs=131.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCC
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKW 172 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~ 172 (408)
.-..+.+..++..|+..+....+.. +-+..-|..-...+...|++++|.--.++-.... .....+.-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 3345556677778888888777764 3334445555555556666666554332222211 111111122222222222
Q ss_pred HHHHHHHHH---------------HHHhCCC-CCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370 173 TEKAEELFE---------------RVKQSNL-SFNALMYNEMM-TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235 (408)
Q Consensus 173 ~~~A~~~~~---------------~m~~~~~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 235 (408)
..+|.+.++ ....... +|.-.+|-.+- ..+...|++++|.++--...+..- ...+...++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhc
Confidence 233332222 2111111 12223333332 234556788888777666655421 223344444
Q ss_pred H--HHhcCCHHHHHHHHHHHhcCCCCCCCHHH-------------HHHHHHHHHHcCchhhhHHHHHHHHHHhcc---cC
Q 015370 236 S--CAATLNIDQVKKFLDEMSCDSGGSDDWVK-------------YVNLVNIYITASHLVNAESSTLVEAEKSIT---QR 297 (408)
Q Consensus 236 ~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 297 (408)
+ +...++.+.+...|++..+- -|+... +..=.+-..+.|.+.+|.+ .+.+.....+ .+
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E-~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE-CYTEALNIDPSNKKT 285 (486)
T ss_pred ccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH-HHHHhhcCCccccch
Confidence 3 34467777888888776652 232221 1112233456777888877 6766655432 33
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
+...|-....+..+.|+.++|+.--++..+. |..- |..-..++...++|++|.+-++...+..
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666677778888887766654432 2221 2222334455677888888777766543
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.66 Score=41.70 Aligned_cols=168 Identities=11% Similarity=0.009 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCCHHH
Q 015370 192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYNLWISSCAA---TLNIDQVKKFLDEMSCDSGGSDDWVK 265 (408)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 265 (408)
..+...++-.|....+++...++++.+.... +.-....-....-++.+ .|+.++|.+++..+... ...++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHH
Confidence 3444566667889999999999999998752 11122222233445666 89999999999985552 56678888
Q ss_pred HHHHHHHHHHc---------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC-H---HHHHHHH---HH-HHhc
Q 015370 266 YVNLVNIYITA---------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN-K---DKIDQIW---KS-LRMT 328 (408)
Q Consensus 266 ~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~---~~a~~~~---~~-m~~~ 328 (408)
|..+...|-.. ...++|.. .+.+..... |+..+=-.+...+...|. . .+..++- .. +.+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~-~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIE-WYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHH-HHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 88888877432 12455666 555444433 332221112222223332 2 2223333 11 1123
Q ss_pred cC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 329 KQ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 329 ~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
|. ..+-..+..++.+..-.|+.++|.+..++|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32 223344567788888888888888888888764
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.54 Score=40.23 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=109.6
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCC
Q 015370 73 TNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPL 152 (408)
Q Consensus 73 ~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 152 (408)
.+-+++|..+-.++....-..-.......|++.+|..+|....... +-+...--.+..+|...|+.+.|..+++.++.
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 4556666665555444444445567788899999999999998864 44456777788999999999999999999987
Q ss_pred CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 015370 153 SAKTS--ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--NVVPDIF 228 (408)
Q Consensus 153 ~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ 228 (408)
...+. .....-|..+.+.....+...+-.+.-.. +-|...=..+...+...|+.+.|++.+-.+.++ |.. |..
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~ 273 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGE 273 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcH
Confidence 63332 22223344555555555444444444433 236777778888888999999999887777644 333 445
Q ss_pred HHHHHHHHHHhcC
Q 015370 229 TYNLWISSCAATL 241 (408)
Q Consensus 229 ~~~~ll~~~~~~g 241 (408)
.-..++..+.-.|
T Consensus 274 ~Rk~lle~f~~~g 286 (304)
T COG3118 274 ARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHhcC
Confidence 5555666655555
No 218
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.37 E-value=0.2 Score=43.83 Aligned_cols=151 Identities=17% Similarity=0.267 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh--hc----ChHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHcCCC
Q 015370 104 YKHALEISEWMVTHKEFVLSDSDYATRIDLMTK--VF----GIHSGERYFEGLPLS-----AKTSETYTALLHLYAGAKW 172 (408)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~ 172 (408)
+++.+++++.+.+.| +.-+..+|-+..-.... .. ....|..+|+.|++. +++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 567788999999987 88787777664444333 22 356788999999987 3567777777665 3333
Q ss_pred ----HHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 015370 173 ----TEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-- 242 (408)
Q Consensus 173 ----~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-- 242 (408)
.+.++.+|+.+.+.|+..+-. ..+.++..+....+ ...+..+++.+.+.|+++....|..+.- ++-.++
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl-Lall~~~~ 233 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL-LALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH-HHhcCCch
Confidence 466788899999888665433 33333333322222 4578889999999999988877765533 332222
Q ss_pred ---HHHHHHHHHHHhcCCC
Q 015370 243 ---IDQVKKFLDEMSCDSG 258 (408)
Q Consensus 243 ---~~~a~~~~~~~~~~~~ 258 (408)
.+...++.+.+.+..+
T Consensus 234 ~~~~~~i~ev~~~L~~~k~ 252 (297)
T PF13170_consen 234 EKIVEEIKEVIDELKEQKG 252 (297)
T ss_pred HHHHHHHHHHHHHHhhCcc
Confidence 3344555555555434
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.17 Score=47.61 Aligned_cols=176 Identities=13% Similarity=0.047 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-C-------CHHHHHHHHHHHHc----CCCHH
Q 015370 107 ALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-K-------TSETYTALLHLYAG----AKWTE 174 (408)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~-------~~~~~~~ll~~~~~----~~~~~ 174 (408)
..-+|.-+.+. + |..+..+++..+-.|+-+.+++.+.+-.+.+ . -.-.|...+..++. ..+.+
T Consensus 176 G~G~f~L~lSl--L---Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL--L---PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh--C---CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 34556666553 2 2344556666666777777777776644421 1 12344555544443 34567
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370 175 KAEELFERVKQSNLSFNALMYNEM-MTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 175 ~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
.|.++++.+..+ -|+...|... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-..++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 778888877776 3555555433 344556778888888887654311 1122334444555666677888888888
Q ss_pred HHHhcCCCCCCCHHHHH-HHHHHHHHcCch-------hhhHHHHHHHHHH
Q 015370 251 DEMSCDSGGSDDWVKYV-NLVNIYITASHL-------VNAESSTLVEAEK 292 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~-~li~~~~~~~~~-------~~a~~~~~~~~~~ 292 (408)
..+.+.+.. +...|. ....++...++. ++|.+ ++.++-.
T Consensus 329 ~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~-l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEE-LFRKVPK 375 (468)
T ss_pred HHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHH-HHHHHHH
Confidence 887775333 223332 222334445555 67777 6666544
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.21 Score=47.07 Aligned_cols=164 Identities=15% Similarity=0.045 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHH----cCchhhhHHHHHHHHHHhcccCccc
Q 015370 230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-----KYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWI 300 (408)
Q Consensus 230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 300 (408)
+..++....-.||-+.+++.+.+..+..++.-... .|...+..++. ....+.|.+ ++..+...- |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~-lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE-LLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH-HHHHHHHhC--CCcH
Confidence 44456666677899999998888777434432222 23344443333 345677888 777776654 3444
Q ss_pred hHHH-HHHHHHhcCCHHHHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370 301 TYDF-LIILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 376 (408)
Q Consensus 301 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 376 (408)
.|.. -...+...|++++|++.|++...... +.....+--+...+.-.+++++|.+.|.++.+.+.. ...+|.-+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~ 345 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHH
Confidence 4433 33456678999999999996543111 112233445667788889999999999999986533 34444444
Q ss_pred HHH-HHhcCCh-------HHHHHHHHHHHh
Q 015370 377 LGA-FSDVGLT-------EKANEFHMLLLQ 398 (408)
Q Consensus 377 i~~-~~~~g~~-------~~a~~~~~~m~~ 398 (408)
..+ +...|+. ++|.++|.+...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 433 3456777 888888887654
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.55 Score=40.20 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=90.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015370 165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 244 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 244 (408)
......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566788888888888877664 33456677788888888888888888887765432222233333444555555555
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 015370 245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 317 (408)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 317 (408)
+...+-.+.-.+ +.|...-..+...+...|+.+.|.+.++.-+.+...-.|...-..|+..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 555555555442 3466666677778888888888888344433333223344555566666655553333
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.26 E-value=0.16 Score=47.11 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 192 ALMYNEMMTLYMSVGQVEKVALVVEE 217 (408)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~a~~~~~~ 217 (408)
...|..|.....+.|+++-|++.|++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34455555555555555555544443
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.24 E-value=0.85 Score=41.02 Aligned_cols=79 Identities=10% Similarity=-0.046 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhcCCCCC-C----CHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCChhhHH
Q 015370 125 SDYATRIDLMTKVFGIHSGERYFEGLPLSA-K----TSETYTALLHLYAG---AKWTEKAEELFERVKQSNLSFNALMYN 196 (408)
Q Consensus 125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~----~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~ 196 (408)
.+...++-.|-...+++..+++.+.+...+ . +..+-....-++.+ .|+-++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455556777778888888888777641 1 12222233444555 778888888888755555567777777
Q ss_pred HHHHHHH
Q 015370 197 EMMTLYM 203 (408)
Q Consensus 197 ~li~~~~ 203 (408)
.+...|-
T Consensus 222 L~GRIyK 228 (374)
T PF13281_consen 222 LLGRIYK 228 (374)
T ss_pred HHHHHHH
Confidence 7776663
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.23 E-value=1.2 Score=42.47 Aligned_cols=178 Identities=13% Similarity=0.038 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHH-----
Q 015370 91 LRHILKELRKSQR--YKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTAL----- 163 (408)
Q Consensus 91 ~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l----- 163 (408)
++..=++|.+-++ +-+.+.-+++++++| -.|+... +...++-.|++.+|-++|.+--....-...|+-|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDY 676 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHH
Confidence 3444455555544 334455556777776 4566543 3456777889999999887765432222233221
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH------HHHhCCCCCC---HHHHHHHH
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE------EIKRKNVVPD---IFTYNLWI 234 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~g~~p~---~~~~~~ll 234 (408)
..-+.+.|.-++-..+.++--+. .-|+.-=.+....+...|+.++|..+.- -+.+-+.+.| ..+...+.
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a 754 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCA 754 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHH
Confidence 22233333333322222211110 0011111233445556677777766531 1122222222 23333333
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
..+-+...+..|.++|.+|-+. ..++......+++.+|..
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFA 794 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHh
Confidence 3444556667777777777552 256677777788888877
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.89 Score=40.78 Aligned_cols=155 Identities=11% Similarity=-0.029 Sum_probs=105.5
Q ss_pred HHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH-------------HHHHH
Q 015370 96 KELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS-------------ETYTA 162 (408)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~~ 162 (408)
.++.-.|+.++|.+.-..+.+.. ..+....-.-..++--.++.+.|...|++-...+|+- ..|..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 34566788888888877777653 2233333333344556778889999998877766542 23344
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH--HHH
Q 015370 163 LLHLYAGAKWTEKAEELFERVKQSN---LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-FTYNLW--ISS 236 (408)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l--l~~ 236 (408)
=.+-..+.|++..|.+.|.+.+..+ ..|++..|-....+..+.|+.++|+.--+....- |. .....+ ..+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHH
Confidence 4455678899999999999988653 5566667777777888899999998887776653 33 222223 335
Q ss_pred HHhcCCHHHHHHHHHHHhcC
Q 015370 237 CAATLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~ 256 (408)
+...+++++|.+-+++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55678899999988887763
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.11 E-value=0.84 Score=39.78 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=122.1
Q ss_pred HcCCCHHHHHHHHHHHHhCC--CCCCh------hhHHHHHHHHHhcC-CHHHHHHHHHHHHhC--------CCCCCH---
Q 015370 168 AGAKWTEKAEELFERVKQSN--LSFNA------LMYNEMMTLYMSVG-QVEKVALVVEEIKRK--------NVVPDI--- 227 (408)
Q Consensus 168 ~~~~~~~~A~~~~~~m~~~~--~~p~~------~~~~~li~~~~~~g-~~~~a~~~~~~m~~~--------g~~p~~--- 227 (408)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+ +.+ +++.|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677788888877766532 12221 1233333333 344 777776666554321 122332
Q ss_pred --HHHHHHHHHHHhcCCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH
Q 015370 228 --FTYNLWISSCAATLNID---QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 302 (408)
Q Consensus 228 --~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 302 (408)
.++..++.+|...+..+ +|..+++.+....+-+| .++-.-+..+.+.++.+.+.+ .+.+|.....- ....+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~-~L~~mi~~~~~-~e~~~ 158 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEE-ILMRMIRSVDH-SESNF 158 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHH-HHHHHHHhccc-ccchH
Confidence 45666777777766654 56667777766544333 444455666666788888888 77777776543 23444
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhccCCCChhhHH--HHHHH---HHhcC------CHHHHHHHHHHHHhhCCCCCC
Q 015370 303 DFLIILYAG--LGNKDKIDQIWKSLRMTKQKMTSRNYI--CILSS---YLMLG------HLKEVGEIIDQWKQSATSDFD 369 (408)
Q Consensus 303 ~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~---~~~~g------~~~~A~~~~~~~~~~~~~~~~ 369 (408)
..++..+.. ......|...+..+....+.|....+. .++.. ..+.+ .++....+++...+....+.+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555554422 233456667777666666666554111 11111 11211 255555666644433222333
Q ss_pred HHH--------HHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 370 ISA--------CNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 370 ~~~--------~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
..+ |+. ...+.+.+++++|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 333 332 344677899999999998544
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=95.96 E-value=0.17 Score=39.35 Aligned_cols=92 Identities=8% Similarity=-0.134 Sum_probs=66.8
Q ss_pred HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 015370 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 347 (408)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 347 (408)
....-+...|++++|.. +|.-+..-. ..+..-|..|..++-..+++++|...|...-..+. -|+..+--...++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~-~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAET-FFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 44455667899999998 776654433 33556677788888888999999999886555443 2444555677888889
Q ss_pred CCHHHHHHHHHHHHh
Q 015370 348 GHLKEVGEIIDQWKQ 362 (408)
Q Consensus 348 g~~~~A~~~~~~~~~ 362 (408)
|+.+.|+..|+..++
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988776
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.92 E-value=0.55 Score=35.99 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 205 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 205 (408)
.++..+...+........++.+...+ +.+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555666666666655554 24555566666666554
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.90 E-value=0.05 Score=48.29 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHH----HhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hhCCCCCC
Q 015370 299 WITYDFLIILYAGLGNKDKIDQIWKSL----RMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWK----QSATSDFD 369 (408)
Q Consensus 299 ~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 369 (408)
...|..|...|.-.|+++.|+...+.= ++-|-+. ....+..+..++.-.|+++.|.+.|+... +.|.....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 346667777777889999998766532 2222221 23457778899999999999999987643 33323334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370 370 ISACNRLLGAFSDVGLTEKANEFHMLL 396 (408)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~a~~~~~~m 396 (408)
..+..+|...|.-..++++|+.++.+-
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 556677888888888899999888764
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=95.89 E-value=0.47 Score=36.99 Aligned_cols=78 Identities=5% Similarity=-0.050 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (408)
..|++++|..+|+-+...++. +..-+..|..++...+++++|...|...-.- . ..|+..+-....+|...|+.+.|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 455555555555555443322 2222333444444455555555555443321 1 122222334444455555555555
Q ss_pred H
Q 015370 284 S 284 (408)
Q Consensus 284 ~ 284 (408)
.
T Consensus 126 ~ 126 (165)
T PRK15331 126 Q 126 (165)
T ss_pred H
Confidence 5
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.19 Score=45.78 Aligned_cols=63 Identities=19% Similarity=0.034 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|+.++|+..+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35556666666666666666666666655543 332 2355566666666666666666665555
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.17 Score=42.64 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHH
Q 015370 302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLG 378 (408)
Q Consensus 302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~ 378 (408)
|+.-+.. .+.|++..|.+-|....+....- ....+-.|..++...|++++|..+|..+.+.....|- ...+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4443333 34455666666666655543210 1223444666666666666666666666554322222 244555566
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 015370 379 AFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~ 398 (408)
+..+.|+.++|..+|++..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.81 E-value=0.093 Score=47.74 Aligned_cols=66 Identities=12% Similarity=-0.047 Sum_probs=47.1
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh----HHHHHHHHHHHhhcChHHHHHHHhcCCC
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD----SDYATRIDLMTKVFGIHSGERYFEGLPL 152 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 152 (408)
.+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..+++...
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677777888888888888888888887764 3443 3467777777777777777777776654
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.51 Score=43.87 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 015370 88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLY 167 (408)
Q Consensus 88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~ 167 (408)
....+.++.-+-+.|..+.|+++-..-. .-.....+.|+++.|.++-+++. +...|..|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHH
Confidence 5557888999999999999987655432 23566788999999999877664 788999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015370 168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 247 (408)
Q Consensus 168 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 247 (408)
.+.|+++-|++.|++..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 999999999999987653 56778888899999888888888777653 444555666679999888
Q ss_pred HHHHHHhc
Q 015370 248 KFLDEMSC 255 (408)
Q Consensus 248 ~~~~~~~~ 255 (408)
+++.+..+
T Consensus 423 ~lL~~~~~ 430 (443)
T PF04053_consen 423 DLLIETGR 430 (443)
T ss_dssp HHHHHTT-
T ss_pred HHHHHcCC
Confidence 88876443
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.75 E-value=1.4 Score=39.36 Aligned_cols=265 Identities=12% Similarity=0.002 Sum_probs=165.3
Q ss_pred CCChhhHHHHHHHH--HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHH
Q 015370 85 QATVSELRHILKEL--RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYT 161 (408)
Q Consensus 85 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 161 (408)
.-|..-+-.++.+- .-.|+++.|.+-|+.|.... ..-.-....|.-..-+.|..+.|.++-+..-...|. ...+.
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~ 192 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR 192 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 34555555555443 34589999999999998631 112223344444456788888888887776655444 67888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSN-LSFNAL--MYNEMMTLYMS---VGQVEKVALVVEEIKRKNVVPDIFTY-NLWI 234 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll 234 (408)
+++...|..|+|+.|+++++.-+... +.++.. .-..|+.+-.. .-+...|...-.+..+ +.||..-- ..-.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence 99999999999999999998766543 334433 22333433221 2345555555544443 45664322 2234
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH--HhcccCccchHHHHHHHHHhc
Q 015370 235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE--KSITQRQWITYDFLIILYAGL 312 (408)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~ 312 (408)
.++.+.|+..++-.+++.+-+. .|.+.. ..+..+.+.|+.-... +++.. ....+.+..+--.+..+-...
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~---ePHP~i--a~lY~~ar~gdta~dR---lkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKA---EPHPDI--ALLYVRARSGDTALDR---LKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhc---CCChHH--HHHHHHhcCCCcHHHH---HHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 6788899999999999988773 344443 3334445556543322 22221 233344556666677777788
Q ss_pred CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 015370 313 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~ 363 (408)
|++..|..--+.... ..|....|..|.+.-. ..||-.++.+++.+.++.
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888887766554433 3677777777777543 559999999998887764
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.48 Score=42.31 Aligned_cols=97 Identities=10% Similarity=-0.009 Sum_probs=70.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 379 (408)
Q Consensus 300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (408)
.+++.|..+|.+.+++.+|++.-.+.+..+ .+|....-.=..+|...|+++.|+..|+++++.. +-|...-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 467778888899999999999888887775 3467676667788889999999999999998853 3355555556655
Q ss_pred HHhcCChHH-HHHHHHHHHhc
Q 015370 380 FSDVGLTEK-ANEFHMLLLQK 399 (408)
Q Consensus 380 ~~~~g~~~~-a~~~~~~m~~~ 399 (408)
--+..+... ..++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 555444443 36788877643
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.60 E-value=1.4 Score=38.94 Aligned_cols=21 Identities=24% Similarity=0.074 Sum_probs=9.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 015370 301 TYDFLIILYAGLGNKDKIDQI 321 (408)
Q Consensus 301 ~~~~li~~~~~~~~~~~a~~~ 321 (408)
.+..|-..|.+..|+++|.-+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhh
Confidence 444444444445555444433
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.34 E-value=2.2 Score=38.92 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH-HH
Q 015370 264 VKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-IL 341 (408)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li 341 (408)
.+|...+++-.+..-.+.|.. +|-+..+.+ ..+++..++++|..++ .|+...|..+|+.-... .||...|.- .+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~-~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARK-LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHH-HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345667777777777888888 888777766 6678888888887665 57778888888753332 456666543 56
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 342 SSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.-+...++-+.|..+|+..+..- ..+ ...|..+|.--...|+...+..+-++|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66677889999999999655431 222 46788888888888988877776666654
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.14 E-value=0.96 Score=33.70 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (408)
-.|..++..++..+.... .+..-+|-+|--....-+-+-..++++.+-+-+.+.+-.. .-.++.+|.+.|...+-
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~~se~- 88 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNKLSEY- 88 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH-
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcchHHH-
Confidence 356667777777766653 2344444444444444455566666666655322211111 23455566555544332
Q ss_pred HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
....+..+...|+-+...+++..+.+.+ .+++....-+..+|.+.|+..++.+++.+.-++
T Consensus 89 ------------------vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 ------------------VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ------------------HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ------------------HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3345666678888888888888876533 677778888899999999999999999998887
Q ss_pred C
Q 015370 364 A 364 (408)
Q Consensus 364 ~ 364 (408)
|
T Consensus 150 G 150 (161)
T PF09205_consen 150 G 150 (161)
T ss_dssp T
T ss_pred c
Confidence 7
No 240
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.12 E-value=0.78 Score=40.17 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHH
Q 015370 315 KDKIDQIWKSLRMTKQKMTSRNYICI 340 (408)
Q Consensus 315 ~~~a~~~~~~m~~~~~~p~~~~~~~l 340 (408)
..++.++++.+.+.|+++....|..+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHH
Confidence 34667777777777777766665544
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.11 E-value=0.8 Score=36.72 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
...+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+...+.+....--.++......-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34566777777788888888888877777644333 2355667777777777777777766655322111111111112
Q ss_pred H-----HHHhcCCHHHHHHHHHHHhc
Q 015370 235 S-----SCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 235 ~-----~~~~~g~~~~a~~~~~~~~~ 255 (408)
. .+...+++..|-+.|-+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 2 12345777777777766554
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=0.47 Score=40.13 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHH
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQSNL--SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD-IFTYNLWI 234 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll 234 (408)
.|+.-+.. .+.|++..|...|...++..- .-....+--|...+...|++++|..+|..+.+.-.+ |- ..++--+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544443 334556666666666655420 011223444555666666666666666555543211 11 13444445
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 015370 235 SSCAATLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~ 256 (408)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555566666666666666554
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.03 E-value=2.2 Score=37.22 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=14.3
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 015370 343 SYLMLGHLKEVGEIIDQW 360 (408)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~ 360 (408)
.+.+.+++++|.++|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 356789999999999854
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.01 E-value=1.2 Score=34.10 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370 231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 310 (408)
Q Consensus 231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 310 (408)
..++..+...+.+.....+++.+... + ..+...++.++..|++.+. ++... .+.. ..+......++..|.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~~-~~ll~-~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYDP-QKEIE-RLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHCH-HHHHH-HHHh------ccccCCHHHHHHHHH
Confidence 34566666677788888888887774 3 3566677888888877643 33333 2321 123444556777788
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370 311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 382 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (408)
+.+.++++..++.++.. +...+..+... ++.+.|.+++.+ ..+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHHHHHHc
Confidence 88888888888876522 22334444444 788888888775 2356678878776654
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.72 E-value=3.1 Score=38.31 Aligned_cols=160 Identities=8% Similarity=-0.029 Sum_probs=85.5
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHc---------CchhhhHHHHHHHHHHhcc
Q 015370 231 NLWISSCAAT-----LNIDQVKKFLDEMSCDSGGSDD-WVKYVNLVNIYITA---------SHLVNAESSTLVEAEKSIT 295 (408)
Q Consensus 231 ~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~ 295 (408)
...+++.... ...+.|..+|.+........|+ ...|..+..++... ....+|.+ +.+...+.+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~-~A~rAveld- 334 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALE-LLDYVSDIT- 334 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHHhcC-
Confidence 5555554432 1245677777777732233333 33444444443322 22334444 444443333
Q ss_pred cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHH
Q 015370 296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 374 (408)
Q Consensus 296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (408)
+.|......+..+..-.++++.|..+|++.... .||. ..|......+...|+.++|.+.+++..+....+.-.....
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 335566666666667777788888888876654 4543 3444445555667888888888888665432222233333
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 015370 375 RLLGAFSDVGLTEKANEFHML 395 (408)
Q Consensus 375 ~li~~~~~~g~~~~a~~~~~~ 395 (408)
-.+..|+..+ .+.|..++-+
T Consensus 413 ~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCCc-hhhhHHHHhh
Confidence 3344555554 5566665543
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.70 E-value=0.53 Score=40.42 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 015370 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVVPDIFTYNL 232 (408)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 232 (408)
.++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455666777777777777777777777765 45667777777777777777777777776654 466666665555
Q ss_pred HHHH
Q 015370 233 WISS 236 (408)
Q Consensus 233 ll~~ 236 (408)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=2.2 Score=35.62 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA 168 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~ 168 (408)
..|.....+|...+++++|...+.+..+- ...+...|+. ...++.|.-+.+++..-+.-+..|+--...|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45666677777788888888777766542 1222222221 22334444444444432223444555556677
Q ss_pred cCCCHHHHHHHHHHH
Q 015370 169 GAKWTEKAEELFERV 183 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m 183 (408)
.+|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 777766666555543
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=1.4 Score=38.48 Aligned_cols=151 Identities=8% Similarity=-0.068 Sum_probs=106.5
Q ss_pred HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHH----HHHHHHHHHcCCCH
Q 015370 99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSET----YTALLHLYAGAKWT 173 (408)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~ll~~~~~~~~~ 173 (408)
--.|++.+|-..++++.+. .+.|...++.-=.+|.-.|+.+.-...++++... .+|... ...+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3457788888889999886 5777888888888999999988888888887765 555433 33444556788999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370 174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---NVVPDIFTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
++|++.-++..+.+ +-|..+-.+....+--.|++.++.++..+-... +--.-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988876 557777778888888899999998887654321 00000011111122344568899999998
Q ss_pred HH
Q 015370 251 DE 252 (408)
Q Consensus 251 ~~ 252 (408)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.2 Score=39.92 Aligned_cols=126 Identities=6% Similarity=0.006 Sum_probs=75.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC-----CCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370 165 HLYAGAKWTEKAEELFERVKQS-----NLS---------FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY 230 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~-----~~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 230 (408)
+.|.+.|++..|..-|++.... +.+ .-..+++.+..+|.+.+++.+|++.-......+. +|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 4566677777777776664321 111 1134566677777778888888777777776543 355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh-HHHHHHHHHHhc
Q 015370 231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA-ESSTLVEAEKSI 294 (408)
Q Consensus 231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~~~ 294 (408)
---..++...|+++.|+..|+++.+. -|.|-.+-+.|+.+--+.....+. .+ ++..|+...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk-~y~~mF~k~ 356 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKK-MYANMFAKL 356 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence 55666777778888888888887762 233444444555555555544444 33 566665543
No 250
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.61 E-value=1.8 Score=34.15 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcccHHH
Q 015370 74 NVIQRWVSEGNQATVSELRHILKELRKSQRYKH 106 (408)
Q Consensus 74 ~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 106 (408)
+.++.+.+.|++|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334445555666666666666666666665443
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.55 E-value=2.5 Score=37.39 Aligned_cols=127 Identities=11% Similarity=0.124 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc---Ccc------
Q 015370 233 WISSCAATLNIDQVKKFLDEMSCDSGGSD----DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---RQW------ 299 (408)
Q Consensus 233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~------ 299 (408)
+-.++...+.++++++.|+...+-..-.. ...+|..|-..|.+..++++|.- +.....+-... .|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~-f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALF-FPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhh-hhHhHHHHHHhcCcCchhHHHHH
Confidence 44555555666666666665544211111 12346666666777777766665 33333221111 111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh----ccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 300 ITYDFLIILYAGLGNKDKIDQIWKSLRM----TKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQW 360 (408)
Q Consensus 300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (408)
...-.|.-++...|..-.|.+.-++..+ .|-+|. ......+.+.|-..|+.|.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1112334445556666666555554322 222211 112334556666677777666666553
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.51 E-value=1.9 Score=34.02 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 015370 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS 257 (408)
Q Consensus 178 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 257 (408)
+.+..+.+.+++|+...|..+++.+.+.|++.. +.++.+.++-+|.......+-.+. +....+.++=-+|.++-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 344444555666666666666666666665443 333344445555544444333222 12223333333333321
Q ss_pred CCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 258 GGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 258 ~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
+ ..+..++..+...|++-+|.+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr 110 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALR 110 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHH
Confidence 1 013345555555666666655
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.50 E-value=0.41 Score=40.55 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=71.2
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 015370 190 FNALMYNEMMTLYMS-----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------------NIDQVKK 248 (408)
Q Consensus 190 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~~ 248 (408)
-|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.||+.+-+-. +-+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 356677777766653 3566777777889999999999999999998765432 2356889
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchh
Q 015370 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 280 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 280 (408)
++++|.. .|+-||-.+-..|++++.+.+..-
T Consensus 145 vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 145 VLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 9999999 599999999999999998887643
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.41 E-value=3.9 Score=37.35 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370 192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 270 (408)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 270 (408)
..+|...+++-.+..-++.|..+|-++.+.| +.+++..++++|..++ .|+...|..+|+-=... .+.+..--+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3566677777777777888888888888777 5667777787777665 46777788888765542 233333345666
Q ss_pred HHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 271 NIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
..+...++-+.|.. +|+....+.... -...|..+|.--..-|+...+..+=++|.+.
T Consensus 474 ~fLi~inde~nara-LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARA-LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHH-HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 77777788888887 676444332221 1346777777767777777777666666553
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.23 E-value=0.21 Score=29.32 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQS 186 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (408)
+|..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.20 E-value=0.25 Score=28.99 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370 336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 376 (408)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 376 (408)
++..+...|.+.|++++|.++|++.++.. +-|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 45556667777777777777777777653 2344444433
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.18 E-value=5.8 Score=38.41 Aligned_cols=48 Identities=13% Similarity=-0.082 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLT 386 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 386 (408)
.|..--...|.++.|++.--.+.+-..+-|-...|+.|.-+-+....+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 334444566888888776555544333456666777665554443333
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.17 E-value=1.9 Score=32.81 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=34.8
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370 238 AATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 310 (408)
Q Consensus 238 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 310 (408)
.+.|++++|.+.|+.+..+....+ ....--.|+.+|.+.+++++|.. .+++..+..+....+-|-..+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a-~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIA-AYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCCCccHHHHHHHHH
Confidence 445666666666666655422111 12223345555555555555555 5555555444433344444444443
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=94.13 E-value=4.7 Score=37.19 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=96.3
Q ss_pred HHH--HHHHHHHHhhc-----ChHHHHHHHhcCC---CCCCC-HHHHHHHHHHHHc---------CCCHHHHHHHHHHHH
Q 015370 125 SDY--ATRIDLMTKVF-----GIHSGERYFEGLP---LSAKT-SETYTALLHLYAG---------AKWTEKAEELFERVK 184 (408)
Q Consensus 125 ~~~--~~li~~~~~~g-----~~~~a~~~~~~~~---~~~~~-~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~ 184 (408)
..| ...+.+..... ..+.|..+|.+.. ...|+ ...|..+..++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555554422 3467777888776 33343 4444444433322 234556777777777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 015370 185 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 263 (408)
Q Consensus 185 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 263 (408)
+.+ +-|+.+...+..+....++++.|...|++.... .|| ..+|....-.+.-.|+.++|.+.+++..+-.......
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 776 557788888888778888899999999888874 344 3444444444556689999999888866633333333
Q ss_pred HHHHHHHHHHHHcCchhhhHH
Q 015370 264 VKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~ 284 (408)
......+..|+.. ..++|.+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHH
Confidence 4444445566544 4666666
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.03 E-value=1.4 Score=32.74 Aligned_cols=89 Identities=15% Similarity=-0.052 Sum_probs=57.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHH---HHHHHhc
Q 015370 165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIFTYNLW---ISSCAAT 240 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l---l~~~~~~ 240 (408)
-+++..|+++.|++.|.+.+.. .|-....||.-..++.-.|+.++|+.=+++..+. |.+ +...+.+. ...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 4566778888888888777765 2456777888888888888888887777766643 222 33333322 2245556
Q ss_pred CCHHHHHHHHHHHhc
Q 015370 241 LNIDQVKKFLDEMSC 255 (408)
Q Consensus 241 g~~~~a~~~~~~~~~ 255 (408)
|+-+.|..=|+..-+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 777777766666554
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.93 E-value=2.5 Score=33.27 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
.+|.++.+....+.+-..|-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444443333222233333343444444444444444444444
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.62 E-value=3.9 Score=34.48 Aligned_cols=61 Identities=10% Similarity=-0.053 Sum_probs=38.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCC
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLS 153 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 153 (408)
.-...-.+.|++++|.+.|+.+..+.+..|- ..+--.++.++-+.++++.|+...++....
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3334445778888888888888776432222 334445556667777788777777765554
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=7.8 Score=37.87 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370 225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 304 (408)
Q Consensus 225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
-...+.+--+.-+...|+-.+|.++-.+.+- ||-..|-.-+.+++..+++++-.+ +-+ .. ....-|.-
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLek-fAk----sk--ksPIGy~P 749 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEK-FAK----SK--KSPIGYLP 749 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHH-HHh----cc--CCCCCchh
Confidence 3444555556667778999999888766543 788888888999999999998777 322 21 23567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
...+|.+.|+.++|.+++.+.. +. .-.+.+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~-----~l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVG-----GL----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccC-----Ch----HHHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999999987532 11 1578899999999999887554
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.54 E-value=1.4 Score=35.31 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 193 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 193 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
..+..+...|.+.|+.++|++.|.++.+....|.. ..+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788889999999999999999998877555443 4566778888888899888888877765
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.48 E-value=5.6 Score=35.88 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 261 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRM 327 (408)
Q Consensus 261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 327 (408)
....+|..++..+.+.|.++.|.. .+..+....... .....-.-+......|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~-~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALS-ALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHH-HHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556777777777888887777 666665533221 222333344555667777777777776665
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.29 E-value=7 Score=36.40 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=31.8
Q ss_pred HHHHHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 268 NLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSL 325 (408)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 325 (408)
.+..++.+.|+.++|.+ .+.++.+..+.. +......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk-~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIK-MFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHH-HHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45555556666666666 555555544332 2334455666666666666666666654
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.29 E-value=4 Score=33.57 Aligned_cols=202 Identities=15% Similarity=0.053 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 235 (408)
...+......+...+.+..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 344444455555555555555555544431 1122334444445555555555555555555554332221 11111111
Q ss_pred -HHHhcCCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 015370 236 -SCAATLNIDQVKKFLDEMSCDSGG--SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 312 (408)
Q Consensus 236 -~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 312 (408)
.+...|+++.+...+++... ... ......+......+...++.+.+.. .+..............+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALE-LLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHH-HHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 45555666666665555533 111 1122223333333445555555555 444444332221234445555555555
Q ss_pred CCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 313 GNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
++++.+...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666666666554432 22 223333333333555666666666666553
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.28 E-value=2.9 Score=31.89 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=22.5
Q ss_pred HcCchhhhHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 275 TASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
+.|++++|.+ .|+.+...-+... ...--.|+.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~-~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIK-QLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHH-HHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444444444 4444444332211 122223444444445555555444444444
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.24 E-value=0.72 Score=39.62 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=35.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
.++..++..+...|+.+.+...++++..... -+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455555555566666666666665555432 2555566666666666666666666655543
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.23 E-value=4.1 Score=33.50 Aligned_cols=223 Identities=14% Similarity=-0.020 Sum_probs=153.9
Q ss_pred cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCC---CCCCHHHHHHHHHHHHcCCCHHHHH
Q 015370 101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPL---SAKTSETYTALLHLYAGAKWTEKAE 177 (408)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~ 177 (408)
.+....+...+...............+......+...+.+..+...+..... .......+..+...+...++.+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4566667677777666431111357777778888888888888888777653 2456777778888888888899999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370 178 ELFERVKQSNLSFNALMYNEMMT-LYMSVGQVEKVALVVEEIKRKNV--VPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254 (408)
Q Consensus 178 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 254 (408)
+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888765332 233333333 78899999999999998855221 1233444444455677889999999999988
Q ss_pred cCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 255 CDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 255 ~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
.. .+. ....+..+...+...++.+.+.. .+.......+. ....+..+...+...+..+.+...+.+....
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALE-YYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHH-HHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 73 333 46778888888988998999988 67666555433 2334444444455667788888888876655
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.11 E-value=0.23 Score=27.64 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 015370 160 YTALLHLYAGAKWTEKAEELFER 182 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~ 182 (408)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.08 E-value=0.23 Score=27.59 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+|+.|...|.+.|++++|.++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=3.8 Score=32.27 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
+...|..-++ +++.+..++|+.-|.++.+.|...=+ -.--.+.......|+-..|...|++.-.....|-..-=..-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444443 23445556666666666665532110 111112223345566666666666665544334332111112
Q ss_pred H---HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370 235 S---SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 293 (408)
Q Consensus 235 ~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 293 (408)
+ .+...|.++++....+-+..+ +.+.-...-.+|..+-.+.|++.+|.+ .|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~-~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKS-WFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHH-HHHHHHcc
Confidence 2 234556666666666665553 444444445566666666666666666 55555443
No 274
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=2.6 Score=39.94 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=88.4
Q ss_pred hhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370 136 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215 (408)
Q Consensus 136 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 215 (408)
-.|+++.|..++..++ ...-+.+++.+-+.|-.++|+++- +|..-- .....+.|+++.|.++.
T Consensus 598 mrrd~~~a~~vLp~I~-----k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la 660 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-----KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLA 660 (794)
T ss_pred hhccccccccccccCc-----hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHH
Confidence 3455555555444443 234455566666666666665542 222211 12234667888877776
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295 (408)
Q Consensus 216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (408)
.+.. +..-|..|.++....+++..|.+.|....+ |..|+..+...|+-+.-.. +-....+.+.
T Consensus 661 ~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~-la~~~~~~g~ 723 (794)
T KOG0276|consen 661 VEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAV-LASLAKKQGK 723 (794)
T ss_pred Hhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHH-HHHHHHhhcc
Confidence 5442 556788888888888888888888877665 3466777777777665444 3333333332
Q ss_pred cCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 296 QRQWITYDFLIILYAGLGNKDKIDQIWKS 324 (408)
Q Consensus 296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 324 (408)
. |.-..+|...|+++++.+++.+
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHh
Confidence 2 2334455677888888877753
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=12 Score=37.26 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
-++..+.+..+.+.+..+.+..- +-+...|..++..+++.+.++...++..+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g-----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLG-----KEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhC-----ccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 35566677777777777776642 2377889999999999987766665554443
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.58 E-value=0.32 Score=26.45 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.52 E-value=4.1 Score=31.73 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=10.0
Q ss_pred HhhcChHHHHHHHhcCCCCCC
Q 015370 135 TKVFGIHSGERYFEGLPLSAK 155 (408)
Q Consensus 135 ~~~g~~~~a~~~~~~~~~~~~ 155 (408)
...|++.+|.++|+++....|
T Consensus 55 i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHhCCHHHHHHHHHHHhccCC
Confidence 444455555555555444333
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.28 E-value=16 Score=37.92 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSR--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 382 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (408)
-+.+|...|+|++|+.+..++.... +.. +-..|+.-+...++.-+|-++..+... .| ...+..|++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~k 1038 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCK 1038 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhh
Confidence 4556667777777777766553211 111 113466667777888777777776532 11 223445667
Q ss_pred cCChHHHHHHHHHH
Q 015370 383 VGLTEKANEFHMLL 396 (408)
Q Consensus 383 ~g~~~~a~~~~~~m 396 (408)
...|++|..+...-
T Consensus 1039 a~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKA 1052 (1265)
T ss_pred HhHHHHHHHHHHhc
Confidence 77777777665443
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.21 E-value=9.9 Score=35.45 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370 303 DFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 381 (408)
Q Consensus 303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 381 (408)
..|..++.+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+..+....+--..+|+..+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778999999999999998754221 2334567999999999999999999998654322223456766554444
Q ss_pred hcC
Q 015370 382 DVG 384 (408)
Q Consensus 382 ~~g 384 (408)
..+
T Consensus 343 av~ 345 (539)
T PF04184_consen 343 AVG 345 (539)
T ss_pred hhc
Confidence 333
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.04 E-value=0.0082 Score=46.42 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 243 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 243 (408)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +.+-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 3444445555555555555554443344555566666666665555555555411 112222344444555555
Q ss_pred HHHHHHHHH
Q 015370 244 DQVKKFLDE 252 (408)
Q Consensus 244 ~~a~~~~~~ 252 (408)
+++..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555554444
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.93 E-value=4.9 Score=31.31 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHHHHHcCchhhhHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 270 VNIYITASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 270 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
+..-.+.++.+++.. ++..+..-.+. +...++... .+...|++.+|..+|+++.+.
T Consensus 17 ~~~al~~~~~~D~e~-lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 17 LSVALRLGDPDDAEA-LLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHccCChHHHHH-HHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 334456667777777 66655443222 122233322 346777888888888776554
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=8.4 Score=33.91 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 219 (408)
|++.+|-..++++++. .|.|..+++..=.+|.-.|+.+.....++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 4444444444444433 23444444444444555554444444444444
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.79 E-value=3.5 Score=30.76 Aligned_cols=89 Identities=16% Similarity=0.034 Sum_probs=65.7
Q ss_pred HHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CC-C---HHHHHHHHHHHHcCC
Q 015370 97 ELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AK-T---SETYTALLHLYAGAK 171 (408)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~-~---~~~~~~ll~~~~~~~ 171 (408)
+++..|+.+.|++.|.+.... .+-....||.-..++--.|+.++|+.=+++..+. ++ + -..|.--...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 567889999999999988875 3556788999899998889988888877765443 22 2 223334445567778
Q ss_pred CHHHHHHHHHHHHhCC
Q 015370 172 WTEKAEELFERVKQSN 187 (408)
Q Consensus 172 ~~~~A~~~~~~m~~~~ 187 (408)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888877776
No 284
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.73 E-value=7.5 Score=33.04 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 301 TYDFLIILYAGLGNKDKIDQIWKSL 325 (408)
Q Consensus 301 ~~~~li~~~~~~~~~~~a~~~~~~m 325 (408)
.|..=|..|....+-.+...+|+..
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHH
Confidence 4445555565555555555555543
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.98 E-value=0.63 Score=25.09 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.|..+...+.+.|++++|.+.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455556666666666666666555
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.77 E-value=2.4 Score=29.60 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 219 (408)
.=++.+-++.+...++.|++....+.+.+|.+.+++..|.++|+..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455556666666666666666666666666666666666666555
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.32 E-value=3.2 Score=29.40 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
+.-+..+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.+.... ...|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 334566677777778889999999999999999999999999999988765332 226666654
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.26 E-value=0.39 Score=26.31 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=9.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHH
Q 015370 191 NALMYNEMMTLYMSVGQVEKV 211 (408)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~a 211 (408)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.21 E-value=2.2 Score=30.18 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 211 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 211 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
..+-+..+....+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555544
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.96 E-value=7.3 Score=29.89 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=31.1
Q ss_pred hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC
Q 015370 100 KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT 156 (408)
Q Consensus 100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 156 (408)
..++++++..+++.|.--.+-.+...++-. -.+...|++++|.++|+++....+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCC
Confidence 356677777777777653211222233322 3345667777777777777765444
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.72 E-value=3.8 Score=28.70 Aligned_cols=63 Identities=8% Similarity=-0.034 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
+.-++.+-++.+....+.|++....+.+++|-+.+|+..|.++|+-.+.+.. .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456677777777888899999999999999999999999999998876542 24446665554
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.52 E-value=18 Score=33.86 Aligned_cols=164 Identities=11% Similarity=0.046 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
.|....-+++..+.....+.-++.+-.+|...| .+-..|-.++..|..+ ..++-..+|+++.+..+. |.+.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344455556666666666666666666666654 2455566666666655 445556666666554332 222222233
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHcCchhhhHHHHHHHHHHh-cccCccchHHHHHH
Q 015370 235 SSCAATLNIDQVKKFLDEMSCDSGGSDD------WVKYVNLVNIYITASHLVNAESSTLVEAEKS-ITQRQWITYDFLII 307 (408)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~ 307 (408)
..| ..++.+.+..+|.++..+ +.|. ...|.-|+..- ..+.+.... +..++... +...-.+.+.-+-.
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~-l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLR-LQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHH-HHHHHHHhhccchHHHHHHHHHH
Confidence 333 335555666666555542 1120 11233332211 233344444 33333322 22222233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 015370 308 LYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~ 328 (408)
-|....++++|++++..+.+.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 214 KYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccCHHHHHHHHHHHhhh
Confidence 455566666666666655443
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.44 E-value=11 Score=31.09 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhC
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL--YMSVGQVEKVALVVEEIKRK 221 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~ 221 (408)
..+||-|.-.+...|+++.|.+.|+...+.+.. .-|..+=++ +.--|++..|.+=+.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 567777777788888888888888888776522 222222222 22457777777666555444
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.37 E-value=0.59 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=21.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015370 357 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 390 (408)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 390 (408)
|++.++.. +-|...|+.+...|...|++++|.
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444433 446777888888888888887775
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=11 Score=32.88 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=73.4
Q ss_pred CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 015370 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 194 (408)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 194 (408)
...+..+...++..-....++++++.++-+++... ++. +-.+.++.+.+ -+.++++.++..=++-|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 34455566666666666778889988877776642 221 12223333333 356789999988889999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEIKRKN 222 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g 222 (408)
++.+|+.+.+.+++.+|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777543
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.10 E-value=27 Score=35.17 Aligned_cols=200 Identities=13% Similarity=0.001 Sum_probs=102.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHHHHHH
Q 015370 202 YMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWIS-SCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNLV 270 (408)
Q Consensus 202 ~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li 270 (408)
.....++++|..++.+....-..|+. ..++.+-. .....|+++.+.++.+..... .-..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888777643222221 13333322 233468888888877766553 12233445567777
Q ss_pred HHHHHcCchhhhHHHHHHHHHHhcccCccchHH---HHHH--HHHhcCCHHH--HHHHHHHHHhccC--CC----ChhhH
Q 015370 271 NIYITASHLVNAESSTLVEAEKSITQRQWITYD---FLII--LYAGLGNKDK--IDQIWKSLRMTKQ--KM----TSRNY 337 (408)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~--~~~~~~~~~~--a~~~~~~m~~~~~--~p----~~~~~ 337 (408)
.+..-.|++++|.. +.....+....-++..+. .+.. .+...|+... .+..|........ +| -...+
T Consensus 505 ~a~~~~G~~~~Al~-~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALA-LMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77888888888888 666665554444444332 2222 2344563322 2223332222111 11 12234
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370 338 ICILSSYLML-GHLKEVGEIIDQWKQSATSDFDISA--CNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403 (408)
Q Consensus 338 ~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 403 (408)
..+..++.+. +...+|..-+.-..... ..|-... +..|+......|+.++|...++++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 4455555441 12222222222222211 1222222 2256777778899999988888887654444
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.04 E-value=1.1 Score=24.14 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEI 218 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m 218 (408)
|..+...|...|++++|+..|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 333333444444444444444333
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.70 E-value=1.2 Score=25.36 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEI 218 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m 218 (408)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.66 E-value=1.3 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370 228 FTYNLWISSCAATLNIDQVKKFLDEMS 254 (408)
Q Consensus 228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 254 (408)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555666666666666555543
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.55 E-value=20 Score=33.07 Aligned_cols=276 Identities=13% Similarity=0.064 Sum_probs=134.2
Q ss_pred HHhcccHHHHHHHHHHHHhccCCCCChH------HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH--HHc
Q 015370 98 LRKSQRYKHALEISEWMVTHKEFVLSDS------DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL--YAG 169 (408)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~--~~~ 169 (408)
+-+.+++.++.++|.++-+.. ..++. .-+.++++|... +++.....+..+.+..| ...|-.|..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 457788899999998887653 33322 233555665543 44444444444443323 2223333222 345
Q ss_pred CCCHHHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHH
Q 015370 170 AKWTEKAEELFERVKQS--NLSF------------NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN----VVPDIFTYN 231 (408)
Q Consensus 170 ~~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~ 231 (408)
.+++.+|.+.+..-.+. +-.| |...=+..+..+...|++.++..++++|...= ...+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888887766554 2111 22222455666778888888888888776543 336777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH
Q 015370 232 LWISSCAATLNIDQVKKFLDEMSCD--SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY 309 (408)
Q Consensus 232 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 309 (408)
.++-.++++ +|-++++. ..+-|+ |--++..|.+.=+.-++.. ++ ..-|.......++...
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~--Y~-----k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP--YE-----KFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch--HH-----hhCcHHHHHHHHHHHH
Confidence 755555432 22222221 122222 3344444443222111111 00 1112222222233222
Q ss_pred Hhc--CCHHHHHHHHHHHHhccCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHh
Q 015370 310 AGL--GNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLMLGHLKEVGEIIDQWKQSATSD----FDISACNRLLGAFSD 382 (408)
Q Consensus 310 ~~~--~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~li~~~~~ 382 (408)
.-. .+..--++++..-...-+.|+... ...++..+.+ +.+++..+.+.+.... +. .=+.++..++....+
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~-i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK-IEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHH
Confidence 211 111222223332233334554332 2234444443 5555555555544321 11 123467777777788
Q ss_pred cCChHHHHHHHHHHHh
Q 015370 383 VGLTEKANEFHMLLLQ 398 (408)
Q Consensus 383 ~g~~~~a~~~~~~m~~ 398 (408)
.++...|.+.+.-+.-
T Consensus 311 ~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKI 326 (549)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 8888888777776654
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.00 E-value=7.1 Score=31.74 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=43.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHcCchh
Q 015370 203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASHLV 280 (408)
Q Consensus 203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~ 280 (408)
.+.|+ +.|++.|-++...+..-+......+...|. ..+.+++..++.....-. +-.+|+..+.+|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 556666666665554434444444333333 456666666665544321 22456666667777777777666
Q ss_pred hhH
Q 015370 281 NAE 283 (408)
Q Consensus 281 ~a~ 283 (408)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.67 E-value=7.9 Score=27.36 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370 103 RYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFER 182 (408)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 182 (408)
..++|..+-+++...+ ......--+-+..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++..-+.+
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 5678888888887654 1122222233456678899999999988886 4899988887654 66777777777888
Q ss_pred HHhCCCCCChhhH
Q 015370 183 VKQSNLSFNALMY 195 (408)
Q Consensus 183 m~~~~~~p~~~~~ 195 (408)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 88877 4444444
No 303
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.49 E-value=17 Score=30.86 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
...|+.-+. -.+.|++++|.+.|+.+.... -+-...+--.++.++.+.+++++|....++...........-|..-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344544444 345688999999999888653 11123455667777888899999999998887664443444555555
Q ss_pred HHHHhc-------CCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370 235 SSCAAT-------LNID---QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 304 (408)
Q Consensus 235 ~~~~~~-------g~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
.+++.. .|.. .|..-|+++..+ .|-+.. ..+|.. -+..+....-. .=..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Y--------------a~dA~~-~i~~~~d~LA~----~Em~ 172 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRY--------------APDAKA-RIVKLNDALAG----HEMA 172 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcc--------------hhhHHH-HHHHHHHHHHH----HHHH
Confidence 555432 2222 344444444443 121111 111111 11111111000 0014
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
+..-|.+.|.+..|..-+++|.+. ..-+. ..+..+..+|.+.|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 566788888888888888888876 22122 2355677888888888888877665543
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.16 E-value=17 Score=30.61 Aligned_cols=91 Identities=12% Similarity=0.253 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCchhhhHHHHHHHHHHhccc----Cc-cchHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CCChhhH
Q 015370 266 YVNLVNIYITASHLVNAESSTLVEAEKSITQ----RQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNY 337 (408)
Q Consensus 266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~ 337 (408)
+...-+.+.+...+++|-. .+.+-...... ++ -..|-..|-.+....++..|...++.--..+- .-+..+.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~-a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAAT-AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHhhhHhhhhHHhhHHHH-HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 4445556666666666655 33222111111 01 11233444455555666666666654322211 1133445
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 015370 338 ICILSSYLMLGHLKEVGEIID 358 (408)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~ 358 (408)
..|+.+|- .|+.+++..++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHHc
Confidence 55555553 366665555543
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.15 E-value=25 Score=32.53 Aligned_cols=80 Identities=8% Similarity=-0.109 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhccCCCChh----hHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 015370 314 NKDKIDQIWKSLRMTKQKMTSR----NYICILSS--YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 387 (408)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 387 (408)
.+.+-..+-+-+.+.|+.|-.. .-|.|-++ +...|++.++.-.-.-+.+ +.|++.+|.-+.-++....+++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHH
Confidence 3444444545555667665332 23444443 4567888887655443333 5789999988888888899999
Q ss_pred HHHHHHHHH
Q 015370 388 KANEFHMLL 396 (408)
Q Consensus 388 ~a~~~~~~m 396 (408)
+|..++..+
T Consensus 513 eA~~~l~~L 521 (549)
T PF07079_consen 513 EAWEYLQKL 521 (549)
T ss_pred HHHHHHHhC
Confidence 999988765
No 306
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.99 E-value=9.2 Score=27.40 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015370 102 QRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE 181 (408)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 181 (408)
...++|..+.+++...+ ......--+-+..+.+.|++++| +..-.....||...|-+|-. .+.|..+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 46789999999998875 22233333444667788999998 33344443588888877754 47788888888888
Q ss_pred HHHhCC
Q 015370 182 RVKQSN 187 (408)
Q Consensus 182 ~m~~~~ 187 (408)
++-..|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 888776
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.80 E-value=1.2 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 372 ACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 372 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555566666666666655554
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=7.7 Score=33.78 Aligned_cols=127 Identities=11% Similarity=0.134 Sum_probs=82.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh----------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHH
Q 015370 163 LLHLYAGAKWTEKAEELFERVKQ----------SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFT 229 (408)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~----------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~ 229 (408)
|.++|.....|+.-....-.+-. .|.+....+...++..-....+++.+...+-.++... ..|+..
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~- 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT- 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-
Confidence 44556665566543333313222 3445556666777776667788888888887776542 233322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
-.++++.+. .-++++++.++..=.+ +|+-||..+++.+++.+.+.+++.+|.+++...|.+
T Consensus 104 ~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 104 IHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 223444443 3467788888888777 699999999999999999999999999844443333
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.17 E-value=13 Score=28.51 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=25.4
Q ss_pred HcCchhhhHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 275 TASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
..++.+++.. ++..+.---++ +...++...+ +...|++++|..+|+++.+.+
T Consensus 22 ~~~d~~D~e~-lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQA-MLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHH-HHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 4556666666 55544332221 1223333222 355666666666666655543
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.83 E-value=26 Score=31.50 Aligned_cols=66 Identities=12% Similarity=-0.044 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD---DWVKYVNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
....++..+.+.+.+.|.++.|...+..+.+. .... .+.+...-+......|+.++|.. .+.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~-~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQ-KLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 34567888889999999999999999998873 2111 34445566788888999999999 7777766
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.82 E-value=2.3 Score=22.78 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 015370 198 MMTLYMSVGQVEKVALVVEEI 218 (408)
Q Consensus 198 li~~~~~~g~~~~a~~~~~~m 218 (408)
+...+...|++++|.+.|++.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 333333344444444443333
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.64 E-value=0.38 Score=36.99 Aligned_cols=128 Identities=15% Similarity=0.082 Sum_probs=68.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 015370 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 312 (408)
Q Consensus 233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 312 (408)
++..+.+.+.++....+++.+... +...+....+.++..|++.++.++..+ ++. ..+..-...++..|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~-~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLE-FLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHH-TTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHH-Hcc-------cccccCHHHHHHHHHhc
Confidence 455556666677777777777753 444556667777777777766666666 333 11112233556666666
Q ss_pred CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370 313 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 385 (408)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 385 (408)
|.++++..++.++....- .+..+...++++.|.+++.+ .++...|..++..|...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 666666666654322111 11112334455555533332 2356677777777766554
No 313
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.37 E-value=6 Score=32.54 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC----CCHHHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLH 165 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ll~ 165 (408)
|.+..++.+.+.+...+++...+.-.+.. +.|...-..++..+|-.|++++|..-++-..... +-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455667777788888888777766653 4456666777888888888888876555433322 34666777666
Q ss_pred H
Q 015370 166 L 166 (408)
Q Consensus 166 ~ 166 (408)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.23 E-value=9 Score=31.54 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 015370 160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN--VVPDIFTYNLWISS 236 (408)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~ 236 (408)
.+..++.+.+.+.+.+|+...++-.+.. |-|..+-..++..++-.|+|++|..-++..-... ..+...+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445666777777888888777766654 4466677777888888888888877666554421 23344566666654
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.98 E-value=35 Score=32.18 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=115.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 015370 189 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 268 (408)
Q Consensus 189 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 268 (408)
+.|....-+++..+..+..+.-++.+-.+|...|- +...|..++.+|... ..++-..+++++.+- . -.|.+.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~-d-fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY-D-FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-c-chhHHHHHH
Confidence 44666777888888888888888888888887653 667788888888877 556677788877772 2 234444555
Q ss_pred HHHHHHHcCchhhhHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChhhHHHHHH
Q 015370 269 LVNIYITASHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILS 342 (408)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 342 (408)
|+..|-+ ++.+.+.. +|.++..+..+.. ...|.-|+.. -..+.+..+.+...++.. |..--...+.-+-.
T Consensus 138 La~~yEk-ik~sk~a~-~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKYEK-IKKSKAAE-FFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHH-hchhhHHH-HHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 6666655 67777777 6777666544321 1245544431 134566666666655543 22223334555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015370 343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 380 (408)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (408)
-|....++++|++++..+.+.. ..|+-.-..++.-+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~l 249 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD--EKDVWARKEIIENL 249 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc--chhhhHHHHHHHHH
Confidence 7778888888888888777654 44655555555544
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.69 E-value=22 Score=28.82 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=61.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYN-----EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 238 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 238 (408)
...+..++++++|+.-++.....- ....+. .|.+.....|.+|+|+..++.....+. .......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 466778888888888888766542 222332 345556778888888888888777544 2333445567788
Q ss_pred hcCCHHHHHHHHHHHhcC
Q 015370 239 ATLNIDQVKKFLDEMSCD 256 (408)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~ 256 (408)
..|+-++|..-|++....
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 888888888888888774
No 317
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.45 E-value=29 Score=30.08 Aligned_cols=138 Identities=10% Similarity=0.035 Sum_probs=94.5
Q ss_pred hhcChHHHHHHHhcCCCC---CCCHHHHHHHHHHHHc-CCC-HHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHH
Q 015370 136 KVFGIHSGERYFEGLPLS---AKTSETYTALLHLYAG-AKW-TEKAEELFERVK-QSNLSFNALMYNEMMTLYMSVGQVE 209 (408)
Q Consensus 136 ~~g~~~~a~~~~~~~~~~---~~~~~~~~~ll~~~~~-~~~-~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~ 209 (408)
++..+.+|+++|+..... -.|..+...|++.... .+. ...--++.+-+. ..+-.++..+...++..+++.++|.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 445567888888854432 2577888888877776 222 222222333333 2334678888999999999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HhcCCCCCCCHHHHHHHHHHH
Q 015370 210 KVALVVEEIKRK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDE----MSCDSGGSDDWVKYVNLVNIY 273 (408)
Q Consensus 210 ~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~~li~~~ 273 (408)
+-+++++..... +..-|..-|..+|+.....|+..-...+.++ ..+++++..+...-..+-..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999888765 5666888999999999999999877777764 122356766666544444433
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.88 E-value=27 Score=32.55 Aligned_cols=123 Identities=7% Similarity=-0.082 Sum_probs=70.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCC
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKW 172 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~ 172 (408)
-|..-...|+...|-+-+.......+-.|+..- ..-......|+++.+.+.+...... +....+...+++...+.|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 344444556666555433333333212333332 2233456778888888777666554 4566777788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 219 (408)
+++|...-+.|+...+. |...........-..|-+|++.-.|++..
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 88888888777766543 33333322222333455666666666554
No 319
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=82.32 E-value=24 Score=28.41 Aligned_cols=193 Identities=9% Similarity=0.091 Sum_probs=92.3
Q ss_pred CCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 015370 186 SNLSFNALMYNEMMTLYMSV----GQVEKVALVVEEIKRKNVVPDIF----TYNLWISSCAATLNIDQVKKFLDEMSCDS 257 (408)
Q Consensus 186 ~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 257 (408)
.|+.+|...++-++..+... ++.+-+..+=.+....++.++-. ....-+..|-..||+.+.-.+|-.+..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~-- 79 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM-- 79 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh--
Confidence 46677788888777776543 34455555545555555554432 222233455556666655555544443
Q ss_pred CCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH
Q 015370 258 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 337 (408)
Q Consensus 258 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 337 (408)
|.. +.++++.--..+-..+.+.......+.|.....+-++.-+.+++.+.+- -+ .=
T Consensus 80 gce--------------~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L--GR--------iG 135 (233)
T PF14669_consen 80 GCE--------------KFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL--GR--------IG 135 (233)
T ss_pred hcC--------------CHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh--hH--------HH
Confidence 111 1111111100011111111111233445555555555444444333221 11 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 015370 338 ICILSSYLMLGHLKEVGEIIDQWKQS--------ATSD-----FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 404 (408)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 404 (408)
.+++-.|-+..++.++.++++.|-+. |... +--..-|.....+.+.|.+|.|+.+++ +..+..|
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~ 212 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIIS 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeec
Confidence 23555566666677777776666442 2111 112345666777888888888888777 3444444
Q ss_pred CCC
Q 015370 405 NAS 407 (408)
Q Consensus 405 ~~t 407 (408)
..+
T Consensus 213 t~l 215 (233)
T PF14669_consen 213 TPL 215 (233)
T ss_pred CCC
Confidence 443
No 320
>PRK09687 putative lyase; Provisional
Probab=82.08 E-value=34 Score=29.86 Aligned_cols=136 Identities=10% Similarity=-0.120 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-chhhhHHHHHHHHHHhcccCccchHHH
Q 015370 226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS-HLVNAESSTLVEAEKSITQRQWITYDF 304 (408)
Q Consensus 226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
+..+-...+.++.+.++. .+...+-.+.++ ++..+-...+.++.+.+ +...+.. .+..+. ..++...-..
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~-~L~~~L---~D~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIRE-AFVAML---QDKNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHH-HHHHHh---cCCChHHHHH
Confidence 444444555566555553 344444444442 23334444444444432 1223333 222222 3334455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 380 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (408)
.+.++.+.++. .|...+-...+.+ + .....+.++...|+. +|...+..+.+.. ||..+-...+.+|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHH
Confidence 66666666664 3443333333322 1 123566667777764 5666666666532 3554444444444
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.90 E-value=2.8 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 015370 376 LLGAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 376 li~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
|..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556677777777777777766653
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.73 E-value=73 Score=33.47 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI----SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 270 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 270 (408)
|.-.++.--+.|.+++|+.++ .|+...+.-+. +.+.....+++|.-.|+..-+ ..-.+
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl 972 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKAL 972 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHH
Confidence 333444444555555555554 34444444333 334455666666666655433 12455
Q ss_pred HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 015370 271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 350 (408)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 350 (408)
.+|..+|++.+|+. +...+...... -..+-..|+.-+...+++-+|-++..+... . ..-.+..|++...+
T Consensus 973 ~a~~~~~dWr~~l~-~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 973 KAYKECGDWREALS-LAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHhccHHHHHH-HHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHH
Confidence 66777777777776 44433222111 011113455556666666666666654332 1 12344555566666
Q ss_pred HHHHHHHHH
Q 015370 351 KEVGEIIDQ 359 (408)
Q Consensus 351 ~~A~~~~~~ 359 (408)
++|.++...
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666666554
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.19 E-value=4.8 Score=21.51 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQ 185 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (408)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555555555555443
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.00 E-value=7 Score=34.46 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=32.1
Q ss_pred HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 324 (408)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 324 (408)
+.|.+.|.+++|+. .+.......+ .|.+++..-..+|.+...+..|+.=-..
T Consensus 105 N~yFKQgKy~EAID-CYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAID-CYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHH-HhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 45777777777777 5554433322 2666666667777777777666554443
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.70 E-value=64 Score=32.15 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCchhhhHHHHHHH
Q 015370 266 YVNLVNIYITASHLVNAESSTLVE 289 (408)
Q Consensus 266 ~~~li~~~~~~~~~~~a~~~~~~~ 289 (408)
-..|+..|...+++.+|.. ++-.
T Consensus 508 ~e~La~LYl~d~~Y~~Al~-~ylk 530 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALP-IYLK 530 (846)
T ss_pred HHHHHHHHHHccChHHHHH-HHHh
Confidence 3458888999999999998 4443
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.57 E-value=4 Score=21.52 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc
Q 015370 91 LRHILKELRKSQRYKHALEISEWMVTH 117 (408)
Q Consensus 91 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 117 (408)
+..+..++.+.|++++|.+.|+.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667777888888999888888875
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.45 E-value=23 Score=26.81 Aligned_cols=65 Identities=8% Similarity=-0.090 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 298 QWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 298 ~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
+..+--.+..++.+.. +..+.+.+++.+.+.. .|+. ...--|.-++.+.+++++++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3344444555555543 3445556666665522 2221 12223455666777777777777776653
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.99 E-value=27 Score=28.51 Aligned_cols=91 Identities=14% Similarity=0.002 Sum_probs=59.1
Q ss_pred HHHHHcCchhhhHHHHHHHHHHhcccCcc----chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 015370 271 NIYITASHLVNAESSTLVEAEKSITQRQW----ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM 346 (408)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (408)
+-+.+.|++++|.. -+.......+.... +.|..-..++.+.+.++.|++--.+..+.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~s-kY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANS-KYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHH-HHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 45778888888888 77777666554332 34555556677888888888777665554321 11222223446777
Q ss_pred cCCHHHHHHHHHHHHhh
Q 015370 347 LGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 347 ~g~~~~A~~~~~~~~~~ 363 (408)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888775
No 329
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.95 E-value=6.3 Score=25.16 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=17.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
|......+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566666666666666666666543
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.38 E-value=5.9 Score=23.23 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=9.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 015370 164 LHLYAGAKWTEKAEELFERVK 184 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~ 184 (408)
..+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.31 E-value=21 Score=34.07 Aligned_cols=148 Identities=12% Similarity=0.026 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH
Q 015370 225 PDIFTYNLWISSCAA--TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 302 (408)
Q Consensus 225 p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 302 (408)
|+..+..+++.-... ...-+-+..++..|.+ .+-|-+...|.......-.|+...|.. .+.......+.-..+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~-cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIA-CLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHH-HHHHHhccChhhhcccH
Confidence 455555544433222 1223445556666655 455666665555555556788888888 66666555554455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 303 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
..|.....+.|....|-.++..-.... ...+-++..+.+++....++++|++.|++..+.. ..+...-+.|..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHH
Confidence 667777778888888888887665554 3355677888999999999999999999988764 335555555543
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.14 E-value=35 Score=29.42 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHhhcChHHHHHH----HhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--
Q 015370 131 IDLMTKVFGIHSGERY----FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS-- 204 (408)
Q Consensus 131 i~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 204 (408)
|.+++..+++.+++.. |+.-.+.+ ..+...-|-.|.|.++...+.++-..-...--.-+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4555555555554433 22211111 222333333455555555555555544432111122235555544443
Q ss_pred ---cCCHHHHHHHH
Q 015370 205 ---VGQVEKVALVV 215 (408)
Q Consensus 205 ---~g~~~~a~~~~ 215 (408)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 333
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.14 E-value=17 Score=24.98 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHH
Q 015370 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHS 142 (408)
Q Consensus 72 a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (408)
+.++++.+.+.|+. +......+-.+-...|+.+.|.+++..+. +| +..|...++++...|.-+-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg-----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK-----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC-----CcHHHHHHHHHHHcCchhh
Confidence 34445555555422 22222222222223355555555555555 43 3444455555555444333
No 334
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.02 E-value=63 Score=31.06 Aligned_cols=37 Identities=5% Similarity=-0.300 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015370 346 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 384 (408)
Q Consensus 346 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (408)
-.++.+.|..++.++.+. .+++...|..++.-+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI--LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCC
Confidence 346777777777777763 4567777777777666655
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.91 E-value=3.8 Score=20.62 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=4.0
Q ss_pred HHcCCCHHHHH
Q 015370 167 YAGAKWTEKAE 177 (408)
Q Consensus 167 ~~~~~~~~~A~ 177 (408)
+...|+.++|.
T Consensus 11 ~~~~G~~~eA~ 21 (26)
T PF07721_consen 11 LLAQGDPDEAE 21 (26)
T ss_pred HHHcCCHHHHH
Confidence 33333333333
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.89 E-value=3.5 Score=21.73 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 015370 340 ILSSYLMLGHLKEVGEIIDQWKQS 363 (408)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~ 363 (408)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444555555555555555543
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.79 E-value=23 Score=28.32 Aligned_cols=28 Identities=4% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 273 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (408)
+++|.+.|++..+ ..|+..+|+.-+...
T Consensus 96 F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 3444444444443 246666666655554
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.71 E-value=6.6 Score=26.36 Aligned_cols=46 Identities=11% Similarity=-0.032 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 015370 346 MLGHLKEVGEIIDQWKQSATSDFDI-SACNRLLGAFSDVGLTEKANE 391 (408)
Q Consensus 346 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 391 (408)
.....++|+..|....++-...|+. .++..|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544432222221 234444555555555555443
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.06 E-value=35 Score=29.40 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH-
Q 015370 267 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL- 345 (408)
Q Consensus 267 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~- 345 (408)
..=|.+++..|++.++... .-...+...+........-|-.|.+.+++..+.++-..-....-+-....|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsW-vlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSW-VLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHH-HHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3457888888999888883 33333322222223344455667888888888887776655433334445766655544
Q ss_pred ----hcCCHHHHHHHH
Q 015370 346 ----MLGHLKEVGEII 357 (408)
Q Consensus 346 ----~~g~~~~A~~~~ 357 (408)
-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 568899998887
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.79 E-value=36 Score=31.58 Aligned_cols=203 Identities=10% Similarity=0.006 Sum_probs=88.1
Q ss_pred HHHHHhhcChHHHHHHHhcCCCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcC
Q 015370 131 IDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVG 206 (408)
Q Consensus 131 i~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g 206 (408)
+...++.|+.+.+..+++.-.. ++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3344566777777666654221 2211 1233344455566654 344445556544432 1123344555667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHcCchhh
Q 015370 207 QVEKVALVVEEIKRKNVVPDIF---TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIYITASHLVN 281 (408)
Q Consensus 207 ~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 281 (408)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+-+..+++. |..|+... -.+.+...+..|+.+-
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-----gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-----GADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-----CCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 7666544443 33221111 112233444455666544333322 33332211 1234445556666655
Q ss_pred hHHHHHHHHHHhcccCc---cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh---HHHHHHHHHhcCCHHHHHH
Q 015370 282 AESSTLVEAEKSITQRQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGE 355 (408)
Q Consensus 282 a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~ 355 (408)
+.. ++ +.+..++ ..-++.|. ..+..|+.+- .+.+.+.|..|+... ...++...+..|+.+-+.-
T Consensus 151 v~~-Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~ 220 (413)
T PHA02875 151 IEL-LI----DHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220 (413)
T ss_pred HHH-HH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence 444 22 3333222 22222333 2334455443 333445566555432 1234444445566554444
Q ss_pred HHH
Q 015370 356 IID 358 (408)
Q Consensus 356 ~~~ 358 (408)
+++
T Consensus 221 Ll~ 223 (413)
T PHA02875 221 FIK 223 (413)
T ss_pred HHH
Confidence 433
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.38 E-value=74 Score=31.01 Aligned_cols=277 Identities=7% Similarity=-0.082 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHH--HH-HHhhcChHHHHHHHhcCCC-------CCCCHHHHHHHHHHHHcCC--
Q 015370 104 YKHALEISEWMVTHKEFVLSDSDYATRI--DL-MTKVFGIHSGERYFEGLPL-------SAKTSETYTALLHLYAGAK-- 171 (408)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~-- 171 (408)
...+.+.++...+.| .........++ .+ ++...+++.|+.+|+.... .+ +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCC
Confidence 457888888888776 22222222222 22 4466788999998887754 22 4445666777777643
Q ss_pred ---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHH
Q 015370 172 ---WTEKAEELFERVKQSNLSFNALMYNEMMTLYMS-VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA--ATLNIDQ 245 (408)
Q Consensus 172 ---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~ 245 (408)
+.+.|+.++.+.-+.|. |+....-..+.-... ..+...|.++|...-..|.. +..-+.+++-... -..+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 56779999999888883 343333222222222 24678999999999988864 2222222211111 2346788
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH-HHHH---HHh----cCCHHH
Q 015370 246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF-LIIL---YAG----LGNKDK 317 (408)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~---~~~----~~~~~~ 317 (408)
|..++++.-+. | .|...--...+..+.. ++.+.+.- .+..+...+.. ...+-.. ++.. ... ..+.+.
T Consensus 383 A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~-~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 383 AFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALA-LYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHH-HHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhH
Confidence 88888888875 4 3332222233333433 55555554 33333332222 1111111 1100 011 124455
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCChHHH
Q 015370 318 IDQIWKSLRMTKQKMTSRNYICILSSYLML----GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS----DVGLTEKA 389 (408)
Q Consensus 318 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a 389 (408)
+..++.+....| +......+-+.|..- .+.+.|...+......+ ....|| +...+- -.. +..|
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~n-lg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFN-LGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhh-hhhHHhcCcCcch-hHHH
Confidence 566666555444 333333444443322 35666766666655433 223332 211111 122 5677
Q ss_pred HHHHHHHHhc
Q 015370 390 NEFHMLLLQK 399 (408)
Q Consensus 390 ~~~~~~m~~~ 399 (408)
.++++...+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 7777776654
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.36 E-value=34 Score=32.91 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=96.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 248 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 248 (408)
-.|+++.|..++..+. ...-+.+...+-+.|-.++|+++- +|...- .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 3456666655443332 234455666667777777776642 333221 233456788888877
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370 249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 328 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 328 (408)
+..+ ..+..-|..|..+..+.+++..|.+ .+... .-|..|+-.+...|+.+....+-...++.
T Consensus 659 la~e-------~~s~~Kw~~Lg~~al~~~~l~lA~E-C~~~a---------~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 659 LAVE-------ANSEVKWRQLGDAALSAGELPLASE-CFLRA---------RDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHh-------hcchHHHHHHHHHHhhcccchhHHH-HHHhh---------cchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 6543 2367778899999999999988888 55432 24556777777888877776666666666
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 329 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
|. .|...-+|...|+++++.+++..
T Consensus 722 g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 53 23445567778999998888765
No 343
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.29 E-value=51 Score=28.60 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh----cccCccc
Q 015370 225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS----ITQRQWI 300 (408)
Q Consensus 225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 300 (408)
.|..-++.++.- +..++++--+-+++....+|-......+..+...|++.++.+.+.+ ...+.... +.+.|+.
T Consensus 79 fD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~-~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 79 FDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFE-WMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred hhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhcccchhhH
Confidence 344445554432 1122333333344444444445555667777777777777777777 44444332 2232321
Q ss_pred hH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 301 TY-DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR----NYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 301 ~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
.. -.|.-.|....-+++-++..+.|.+.|..-+.. +|.-+. +....++.+|-.++-+...
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 11 112222333334566666666677766533322 222221 1233466666666666543
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.14 E-value=24 Score=26.22 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
..+.++.+...++.|++.....-+++|.+.+++..|..+|+.++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555556666666666666666666666666666666654
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.84 E-value=24 Score=31.10 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 252 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 252 (408)
+.+|+++|.+.++.| ..+|+ +..+...--...+.+.++....-.+.-.-+..+..+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH-hcccCccchHHHHH
Q 015370 253 MSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK-SITQRQWITYDFLI 306 (408)
Q Consensus 253 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li 306 (408)
+.++..+..-......|+.++....-+.+... ++.+..+ ..++.-..+|++.+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqa-vLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQA-VLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccCcchHHHHHHHHH
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.52 E-value=78 Score=32.47 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH--HHHHHHHHHHhcCCCCCCCHHHH-
Q 015370 193 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---IFTYNLWISSCAATLNI--DQVKKFLDEMSCDSGGSDDWVKY- 266 (408)
Q Consensus 193 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~- 266 (408)
.-|..|+..|...|+.++|+++|.+....--.-| ..-+--+++.+.+.+.. +-+.++-++..++. ......++
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~-p~~gi~Ift 583 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN-PEAGIQIFT 583 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC-chhheeeee
Confidence 4588999999999999999999999886320011 12233355555555544 55555555554421 00000001
Q ss_pred -----------HHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 015370 267 -----------VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 311 (408)
Q Consensus 267 -----------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (408)
...+..|......+-+.. .++.+......++....+.++..|+.
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~-YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIP-YLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHH-HHHHHhHhccccchHHHHHHHHHHHH
Confidence 123345666777777777 77777777666677777777777764
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.51 E-value=11 Score=25.39 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHH
Q 015370 311 GLGNKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIID 358 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~ 358 (408)
..++.++|+..|....+.-..|.. .++..++.+|+..|++++++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888887766444332 246678889999999888887754
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.39 E-value=89 Score=30.94 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhh
Q 015370 87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKV 137 (408)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (408)
+....-.+|-.|.+.|++++|.++....... .......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 3444556888889999999999998665543 466667777778877665
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.09 E-value=24 Score=30.60 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=23.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217 (408)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 217 (408)
+.|..+|.+.+|.++.++.+..+ +.+...|-.++..+...|+--.|.+-++.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44444444444444444444443 33444444444444444444344333333
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.73 E-value=24 Score=26.22 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 015370 210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS 257 (408)
Q Consensus 210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 257 (408)
+..+-+..+....+.|+......-+++|-+.+|+..|.++|+-++.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 455556666777788888888888888888888888888888887753
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.56 E-value=96 Score=30.90 Aligned_cols=251 Identities=9% Similarity=-0.000 Sum_probs=117.5
Q ss_pred HHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 015370 129 TRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 208 (408)
Q Consensus 129 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 208 (408)
..+..+.+.+++....+++..- +.+...-.....+....|+-++|......+=..| ......++.++..+.+.|.+
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~---p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK---PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 3445556667777666633222 2455566666777777787777766666654444 23456777777777766644
Q ss_pred HHHH--HHHHHHHhCCCC-----------CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-
Q 015370 209 EKVA--LVVEEIKRKNVV-----------PDI-FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY- 273 (408)
Q Consensus 209 ~~a~--~~~~~m~~~g~~-----------p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~- 273 (408)
.... +-++.....|-. ++. .....++... .+...+...+.. ++++...-..++.++
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~------~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART------TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc------cCCChhhHHHHHHHHH
Confidence 3322 222222222211 111 1111111111 122222222111 112221111111111
Q ss_pred -HHcCchhhhHHHHHHHHHHhccc-C--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370 274 -ITASHLVNAESSTLVEAEKSITQ-R--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349 (408)
Q Consensus 274 -~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (408)
....+.+.|.. .+........- + ....+..+.......+...++.+.++..... ..+......-++.-.+.++
T Consensus 251 Rlar~d~~~A~~-~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~d 327 (644)
T PRK11619 251 SVARQDAENARL-MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGD 327 (644)
T ss_pred HHHHhCHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccC
Confidence 12344566666 55554332211 1 1123334433333333245555555543222 1233344444555557788
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
++.+...+..|-......+--.-| +.+++...|+.++|..+|+.+.
T Consensus 328 w~~~~~~i~~L~~~~~~~~rw~YW--~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 328 RRGLNTWLARLPMEAKEKDEWRYW--QADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHhcCHhhccCHhhHHH--HHHHHHHcCCHHHHHHHHHHHh
Confidence 888877777775433212222233 5666666788888888887764
No 352
>PRK09687 putative lyase; Provisional
Probab=74.49 E-value=58 Score=28.40 Aligned_cols=235 Identities=9% Similarity=0.011 Sum_probs=145.1
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcCh----HHHHHHHhcCCCCCCCHHH
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGI----HSGERYFEGLPLSAKTSET 159 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~ 159 (408)
..+|..+....+.++...|.. .+...+..+.. .+|+..-...+.+++..|+. +++...+..+....++..+
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~V 107 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACV 107 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHH
Confidence 346666777778888777753 34444444543 34666666777788888764 4677777766444577777
Q ss_pred HHHHHHHHHcCCC-----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 160 YTALLHLYAGAKW-----TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 160 ~~~ll~~~~~~~~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
-...+.++...+. ...+...+...... ++..+-...+.++.+.++ +++...+-.+... +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 7777777776543 12344444444433 356666777888888887 4566666666653 4555555556
Q ss_pred HHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 015370 235 SSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 313 (408)
Q Consensus 235 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 313 (408)
.++.+.+ +...+...+..+..+ ++..+-...+.++.+.++. .+.. .+....+. ++ .....+.++...|
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~-~av~-~Li~~L~~---~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDK-RVLS-VLIKELKK---GT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCCh-hHHH-HHHHHHcC---Cc--hHHHHHHHHHhcC
Confidence 6666543 234566666666653 4667777888888888874 5655 34333333 22 2346778888888
Q ss_pred CHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370 314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSY 344 (408)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 344 (408)
.. +|...+..+... .||...-...+.++
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 86 677777777654 34555544444444
No 353
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.12 E-value=17 Score=29.51 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=21.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
.|++..|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666666666666655
No 354
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.06 E-value=5 Score=24.67 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 015370 376 LLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 376 li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
+.-++.+.|++++|.+..+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555666666666555555
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.84 E-value=7.3 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 373 CNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 373 ~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
|..+...+...|+++.|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444555555555555555555543
No 356
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.67 E-value=11 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 349 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 349 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.+++..++++.+... +-|..-.-.+|.+|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666655442 23566667789999999999999999988764
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.36 E-value=1.8e+02 Score=33.46 Aligned_cols=152 Identities=10% Similarity=0.046 Sum_probs=90.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKE-FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW 172 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 172 (408)
+..+-.+.+.+.+|+-.++.-..... .......|-.+...|+.-+++|...-+...-.. .|+ . ..-|-.....|+
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~s--l-~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DPS--L-YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Ccc--H-HHHHHHHHhhcc
Confidence 44455677888889888888311100 011233444555688888888887776653111 122 2 233445667799
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-NLWISSCAATLNIDQVKKFLD 251 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~ 251 (408)
++.|...|+.+.+.+ ++...+++-++......|.++.+.-..+-.... ..+....+ +.-+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999886 444667877777777777777766655544433 11222222 222444456666666555544
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=61 Score=28.10 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHHhcCCHHHHHHH
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALM-------YNEMMTLYMSVGQVEKVALV 214 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------~~~li~~~~~~g~~~~a~~~ 214 (408)
.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|++...-+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3445566667777777777776665554433 33455556666665544433
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.97 E-value=49 Score=26.88 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=10.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 015370 378 GAFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (408)
+.+...|+-++|..-|++.++.
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHc
Confidence 3444455555555555544444
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.33 E-value=1.1e+02 Score=30.41 Aligned_cols=195 Identities=14% Similarity=0.076 Sum_probs=102.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHH--
Q 015370 191 NALMYNEMMTLYMSVGQVEKVALVVEEIK-RKNVVPDI--FTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWV-- 264 (408)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~--~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~-- 264 (408)
+...|..||.. |++.++.+. +..+.|.. .++--+...+. ...+++.|+..+++..... -.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDL 98 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHH
Confidence 44556666544 344444444 33333322 33333444443 5677777777777654321 112211
Q ss_pred ---HHHHHHHHHHHcCchhhhHHHHHHHHHHhccc----CccchHHHH-HHHHHhcCCHHHHHHHHHHHHhcc---CCCC
Q 015370 265 ---KYVNLVNIYITASHLVNAESSTLVEAEKSITQ----RQWITYDFL-IILYAGLGNKDKIDQIWKSLRMTK---QKMT 333 (408)
Q Consensus 265 ---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~ 333 (408)
....++..+.+.+... |.. .+++..+.... +-...|..+ +..+...+++..|.+.++.+...- ..|-
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~-~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALK-NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHH-HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 1234566666666666 777 55555443322 112233333 222223378888888888765432 2333
Q ss_pred hhhHHHHHHHHH--hcCCHHHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 015370 334 SRNYICILSSYL--MLGHLKEVGEIIDQWKQSA--------TSDFDISACNRLLGAFSD--VGLTEKANEFHMLLL 397 (408)
Q Consensus 334 ~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 397 (408)
...+..++.+.. +.+..+++.+.++++.... ...|-..+|..+++.++. .|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555544 4455677777777663321 123456777777776654 677767766655553
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.00 E-value=88 Score=29.36 Aligned_cols=121 Identities=10% Similarity=-0.020 Sum_probs=77.8
Q ss_pred HhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370 203 MSVGQVEKVA-LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 281 (408)
Q Consensus 203 ~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 281 (408)
...|++-.|- +++..+....-.|+.+...+.| ....|+++++.+.+....+ .+-....+...++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456665554 4555555555556665555444 4567999999988887766 344555667788899999999999
Q ss_pred hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
|.. +...|...... +..........--..|-++++...|+++...+
T Consensus 376 a~s-~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALS-TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHH-HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 998 66655544333 22222222222345678899999998876554
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.71 E-value=75 Score=28.41 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC
Q 015370 379 AFSDVGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~g~ 401 (408)
.+..+|..+.|..+++-+++.++
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34456666666666666666654
No 363
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=76 Score=28.11 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh----cccCc
Q 015370 223 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS----ITQRQ 298 (408)
Q Consensus 223 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~ 298 (408)
++.|..-++.+..+ +..++++-.+..++..+..|-..-...+......||+.|+.+.|.+ .+...... +.+.|
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~-~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALE-ALRKTYEKTVSLGHKID 142 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhhcccchh
Confidence 45565555555543 2234445555555555544444444556677778888888888887 55554443 33445
Q ss_pred cchHHHHHH-HHHhcCCHHHHHHHHHHHHhccCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 299 WITYDFLII-LYAGLGNKDKIDQIWKSLRMTKQKMTSR----NYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 299 ~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
+..+.+-+. .|....-+.+-++..+.+.+.|..-+.. +|..+- +....++.+|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 443332221 2223333344444445555555533322 333332 2344678888888877654
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.52 E-value=1.2e+02 Score=30.13 Aligned_cols=190 Identities=11% Similarity=0.087 Sum_probs=106.2
Q ss_pred CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh--HHHHHHHHHHH-hhcChHHHHHHHhcCCCC--CCC---
Q 015370 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD--SDYATRIDLMT-KVFGIHSGERYFEGLPLS--AKT--- 156 (408)
Q Consensus 85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~~--- 156 (408)
..+...|..+|.. |++.++.+.+...+.|.. .++-.+...+. .+.+++.|+..+++.... .++
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3455666666653 666677776543234433 34445555554 778899999888864322 122
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCC
Q 015370 157 --SETYTALLHLYAGAKWTEKAEELFERVKQS----NLSFNALMYNEM-MTLYMSVGQVEKVALVVEEIKRKN---VVPD 226 (408)
Q Consensus 157 --~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~ 226 (408)
-..-..++..+.+.+... |....++..+. +..+-...|..+ +..+...+++..|.+.++.+...- ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 223345667777777766 88888776543 222222333443 333333478888998888876432 3344
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHhcC--------CCCCCCHHHHHHHHHHHH--HcCchhhhHH
Q 015370 227 IFTYNLWISSCA--ATLNIDQVKKFLDEMSCD--------SGGSDDWVKYVNLVNIYI--TASHLVNAES 284 (408)
Q Consensus 227 ~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~~li~~~~--~~~~~~~a~~ 284 (408)
..++..++.+.. +.+..+++.+.++.+... ....|...+|..++..++ ..|+++.+..
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555544 345566677766665221 012345556666665544 4566555555
No 365
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.63 E-value=41 Score=27.49 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
.|..-..++.+.+.++.|+.--.+.++.+ +....+...-..+|-+...+++|+.=|..+.+
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444445555555555555555555543 11111222223344455555555555555554
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.77 E-value=1.5e+02 Score=29.48 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCC
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-------VEKVALVVEEIKRKNV 223 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~ 223 (408)
..+| ++|-.|.++|++++|.++..+..+. .......+-..+..|....+ -++...-|++......
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3344 4566778888888888888555443 33445667777777766432 2345555555554433
No 367
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.52 E-value=82 Score=26.48 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=56.9
Q ss_pred HHHHHHHHH--HhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 015370 126 DYATRIDLM--TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 203 (408)
Q Consensus 126 ~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 203 (408)
.|...+.++ ...+++++|.+.+-+-.. ....-..++.++...|+.+.|+.+++.+.-..- +......++.. .
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-L 151 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-H
Confidence 344445444 345667777777644321 112222466777777888888888776544321 22333333334 5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 238 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 238 (408)
.++.+.+|+.+-+...+.. ....+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 6678888887766665521 1344445555444
No 368
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.30 E-value=20 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 015370 154 AKTSETYTALLHLYAGAKWTEKAEELFERVKQS 186 (408)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (408)
.|+..+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466666666666666666666666666666554
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.20 E-value=95 Score=27.13 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 301 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 301 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (408)
+++.....|..+|.+.+|.++.++..... ..+...+-.++..++..||--.|..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45566777888999999999888877654 23666677888889999987777766666643
No 370
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.16 E-value=7.4 Score=29.19 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=24.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 202 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 202 (408)
+.|.-..|-.+|.+|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34555668999999999998776 677777654
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.05 E-value=43 Score=23.10 Aligned_cols=67 Identities=7% Similarity=0.094 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 015370 106 HALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAE 177 (408)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 177 (408)
.+-++++...+.| -.+......+-.+-...|+.+.|.+++..++ ++|+ .|..++.++-..|+-+-|.
T Consensus 20 ~~~~v~d~ll~~~--ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQG--LLTEEDRNRIEAATENHGNESGARELLKRIV-QKEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcC--CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--HHHHHHHHHHHcCchhhhh
Confidence 3456777777776 2333333333333335577777888877777 4454 4566677777776655543
No 372
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.95 E-value=51 Score=23.89 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 302 YDFLIILYAGLGNKDKIDQIWKSLR 326 (408)
Q Consensus 302 ~~~li~~~~~~~~~~~a~~~~~~m~ 326 (408)
|..|+..|...|..++|++++.++.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3444444444444444444444433
No 373
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.62 E-value=27 Score=20.82 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 234 (408)
+.|-.+++...+++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555555555554444
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.07 E-value=35 Score=23.83 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHH----hccCCCC--hhhH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015370 310 AGLGNKDKIDQIWKSLR----MTKQKMT--SRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 377 (408)
Q Consensus 310 ~~~~~~~~a~~~~~~m~----~~~~~p~--~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 377 (408)
.+.|++..|.+-+.+.. ..+.... ...+ ..+.......|+.++|...+++.++.....-|..+....+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 46788888865555443 2222211 1112 2244455677888888888888877654444554444333
No 375
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=64.01 E-value=49 Score=29.45 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=27.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER 145 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 145 (408)
-.+.|.++|.+++|++.|....... +-++.++..-..+|.+..++..|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHH
Confidence 3445566666666666666555432 2255555555555665555554443
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.97 E-value=75 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370 350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401 (408)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 401 (408)
+++|...|++..+. .|+..+|+.-+.... +|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 44555555555543 577777877666553 35566666655543
No 377
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=63.96 E-value=1.5e+02 Score=29.04 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 015370 123 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL 188 (408)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 188 (408)
....+..|+..+. .=+.+.-.++++++.. .+ ...+..++++....|--+...-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3445555555433 3344555555555543 11 55667777777777766555555555555443
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.85 E-value=65 Score=24.79 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=54.6
Q ss_pred HHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Q 015370 183 VKQSNLSFNAL--MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-----VPDIFTYNLWISSCAATLN-IDQVKKFLDEMS 254 (408)
Q Consensus 183 m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 254 (408)
|.+.+..++.. ..|.++......+.+.....+++.+..-.. ..+...|.+++.+.++..- --.+..+|+.++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 33344444433 346666666666777776666666632110 1244567777777755444 334566777777
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc
Q 015370 255 CDSGGSDDWVKYVNLVNIYITA 276 (408)
Q Consensus 255 ~~~~~~~~~~~~~~li~~~~~~ 276 (408)
+ .+.+++..-|..++.++.+.
T Consensus 108 ~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 K-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred H-cCCCCCHHHHHHHHHHHHcC
Confidence 6 46677777777777776655
No 379
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.45 E-value=30 Score=20.68 Aligned_cols=31 Identities=13% Similarity=0.355 Sum_probs=16.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 015370 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMM 199 (408)
Q Consensus 169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 199 (408)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555555555555555555555544443
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.15 E-value=1.3e+02 Score=27.91 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCChhh--HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChH--HHHHHHHHHHhhcChHHHHHHHh
Q 015370 73 TNVIQRWVSEGNQATVSE--LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDS--DYATRIDLMTKVFGIHSGERYFE 148 (408)
Q Consensus 73 ~~~l~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~ 148 (408)
.++++.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.| ..|+.. .....+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~g-a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHG-AIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCC-CCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 455666667776665432 23344444555665433 3333444 333221 11223445556667666666655
Q ss_pred c
Q 015370 149 G 149 (408)
Q Consensus 149 ~ 149 (408)
.
T Consensus 90 ~ 90 (413)
T PHA02875 90 L 90 (413)
T ss_pred c
Confidence 4
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.77 E-value=85 Score=25.72 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=53.3
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChH
Q 015370 310 AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA--TSDFDISACNRLLGAFSDVGLTE 387 (408)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 387 (408)
...-.-+.|.+.|-.+...+.--++.....| -.|....+.+++..++.+..+.. ...+|+..+.+|+..+.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3443445677777767666544343333344 44444688899999988876532 12567888999999999999988
Q ss_pred HHH
Q 015370 388 KAN 390 (408)
Q Consensus 388 ~a~ 390 (408)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.51 E-value=77 Score=25.53 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 015370 235 SSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~ 255 (408)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 346666666666666666655
No 383
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.44 E-value=54 Score=23.37 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=22.9
Q ss_pred HHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370 272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329 (408)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 329 (408)
.+.+.|++++|.. +. ...+.||...|-+|.. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~-l~----~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQ-LG----NKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHH-hc----CCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555555 22 2223455555544432 34444444444444444443
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.39 E-value=2e+02 Score=29.79 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHH-
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQSN---LSFNALMYNEMMTLYMSVGQV--EKVALVVEEIKRKNVVPDIFTYNL- 232 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~- 232 (408)
-|..|+..|...|+.++|++++.+..+.. -.--...+--++....+.+.. +-++++-+...+....-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999988732 011122344466666665554 555555444443321111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 015370 233 -----------WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 276 (408)
Q Consensus 233 -----------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 276 (408)
.+-.|......+-+..+++.+... .-.++....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHHH
Confidence 123456667788889999998875 4455666677788777653
No 385
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.10 E-value=57 Score=23.54 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 322 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 322 (408)
.++|..+.+.+... +. ....+--+-+..+.+.|++++|.. .-.....||...|-+|-. .+.|-.+++...+
T Consensus 22 H~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 22 HQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 44555555555542 11 112222223334455555555533 222334455555544332 3455555555555
Q ss_pred HHHHhc
Q 015370 323 KSLRMT 328 (408)
Q Consensus 323 ~~m~~~ 328 (408)
.++...
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 544443
No 386
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=61.00 E-value=1.3e+02 Score=27.85 Aligned_cols=148 Identities=10% Similarity=0.067 Sum_probs=92.4
Q ss_pred CCCCcchHHHHHhhhcCCCCcHHHHHHHHHH----cCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHH
Q 015370 51 NSDGKDDLKSRIFRISLPKRSATNVIQRWVS----EGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSD 126 (408)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~----~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 126 (408)
..-+|..+...++.+..+..+...+|..... ++.+|+...|. +.+.+....+++.. ..+... .+.||..+
T Consensus 112 ~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh-~FRLLlqYHdPelc----~~Ldtk-kitPd~Y~ 185 (669)
T KOG3636|consen 112 KDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFH-LFRLLLQYHDPELC----NHLDTK-KITPDMYT 185 (669)
T ss_pred ccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccch-HHHHHHHhcCHHHh----hhhhcc-ccCchHHH
Confidence 3445777888888887777777777665554 45566655543 44445555565543 222223 38999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHH---HH-----HHcCCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 015370 127 YATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALL---HL-----YAGAKWTEKAEELFERVKQSNLSFNALMYNE 197 (408)
Q Consensus 127 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll---~~-----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 197 (408)
.|.+...++..-..+-...+++...+. .|=...+-+|| ++ -.+...-+++.++++.|...=-.-|+.-+-.
T Consensus 186 lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffs 265 (669)
T KOG3636|consen 186 LNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFS 265 (669)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHH
Confidence 999888888888888888888876654 24333332222 11 1234556788898888875432335666777
Q ss_pred HHHHHHh
Q 015370 198 MMTLYMS 204 (408)
Q Consensus 198 li~~~~~ 204 (408)
|...|+.
T Consensus 266 LAqyY~~ 272 (669)
T KOG3636|consen 266 LAQYYSD 272 (669)
T ss_pred HHHHHhh
Confidence 7766654
No 387
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.99 E-value=1.1e+02 Score=26.61 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--
Q 015370 156 TSETYTALLHLYAGAKWTEKAEELFERVKQ----SNLSFNALMYN-EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF-- 228 (408)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-- 228 (408)
-...+..+...|++.++.+.+.+...+..+ .|.+.|+...- .|.-.|....-.++-++..+.|.++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 367788889999999998888887766543 45555543222 22223444444678888888888888754432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370 229 --TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 274 (408)
Q Consensus 229 --~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 274 (408)
+|.-+- +....++.+|-.++-+..... -......|...+....
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF-~S~El~sY~~~vrYa~ 238 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTF-ESSELISYSRAVRYAI 238 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccc-cccccccHHHHHHHHH
Confidence 333222 123456777777776665522 1223333544444333
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.62 E-value=1.4e+02 Score=27.48 Aligned_cols=60 Identities=5% Similarity=-0.101 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFERVKQ 185 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (408)
.+.-+.+-|..+|+++.|++.|.+.+.- +.....|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3444555555666666666666553322 12234444455555555555555555544443
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.57 E-value=52 Score=28.05 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 397 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 397 (408)
.+..-|.+.|++++|.++|+.+.. .|-..+...+...+..++.+.|+.+..+.+-=++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 466778888999999999888743 23333445566677788888888888777665554
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.28 E-value=23 Score=30.89 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370 196 NEMMTLYMSVGQVEKVALVVEEIKRKNVV 224 (408)
Q Consensus 196 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 224 (408)
+..|....+.||+++|++++++.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555555666666666666666555554
No 391
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=58.96 E-value=1.8e+02 Score=28.20 Aligned_cols=181 Identities=10% Similarity=0.008 Sum_probs=96.4
Q ss_pred ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-C---CCHHHHHH
Q 015370 87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-A---KTSETYTA 162 (408)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~---~~~~~~~~ 162 (408)
+..+|+.-+.--.+.|+++.+.-+|++..-. +..-...|-..+......|+.+-|..++..-.+- . |......+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 3456666666667777777777777776542 2333455555555555667777776665544333 2 23333333
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH--
Q 015370 163 LLHLYAGAKWTEKAEELFERVKQSNLSFNA-LMYNEMMTLYMSVGQVEKVA---LVVEEIKRKNVVPDIFTYNLWISS-- 236 (408)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~---~~~~~m~~~g~~p~~~~~~~ll~~-- 236 (408)
.+.- ..|+++.|..+++.+.+.- |+. ..-..-+..-.+.|..+.+. .++........ +..+...+.--
T Consensus 374 ~f~e--~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFEE--SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFA 447 (577)
T ss_pred HHHH--hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHH
Confidence 2222 2357778888887777653 332 22223344445666666666 22222222111 11111111111
Q ss_pred ---HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370 237 ---CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277 (408)
Q Consensus 237 ---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 277 (408)
+.-.++.+.|..++.++.+ .++++...|..++......+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 1224677777777777776 46667776777666655444
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.70 E-value=69 Score=31.38 Aligned_cols=92 Identities=8% Similarity=0.049 Sum_probs=58.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHhhcChH------HHHHHHhcCCCCCCCHHHHHHHHH
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKE-FVLSDSDYATRIDLMTKVFGIH------SGERYFEGLPLSAKTSETYTALLH 165 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~ll~ 165 (408)
+|+.+|...|++.++.++++....... -+.=...||..|+-..+.|.++ .|.+.+++..- .-|..||..|+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-n~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-NGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-CCcchHHHHHHH
Confidence 788999999999999999888876531 1122456777788888888753 34445554442 356777777776
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 015370 166 LYAGAKWTEKAEELFERVKQ 185 (408)
Q Consensus 166 ~~~~~~~~~~A~~~~~~m~~ 185 (408)
+-..--+-....-++.+++.
T Consensus 112 ~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hhcChHhHHhccHHHHHHHH
Confidence 65543333334444555444
No 393
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.52 E-value=1.9e+02 Score=28.31 Aligned_cols=77 Identities=8% Similarity=-0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 015370 173 TEKAEELFERVKQSNLSFNALMYNEMMTL-----YMSVGQVEKVALVVEEIKR-------KNVVPDIFTYNLWISSCAAT 240 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 240 (408)
...|.+.++...+.| +...-..+... +....+.+.|...|+.+.. .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666666655 23332222222 2234566666666666655 33 222334444444442
Q ss_pred C-----CHHHHHHHHHHHhc
Q 015370 241 L-----NIDQVKKFLDEMSC 255 (408)
Q Consensus 241 g-----~~~~a~~~~~~~~~ 255 (408)
. +.+.|..++...-+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred CCCccccHHHHHHHHHHHHh
Confidence 2 44556666666555
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.90 E-value=77 Score=23.69 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015370 352 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 395 (408)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 395 (408)
++.++|..|..++.-..-...|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888877765455566777777777778888888887765
No 395
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.58 E-value=65 Score=24.80 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015370 198 MMTLYMSVGQVEKVALVVEEIKRKNVVPD 226 (408)
Q Consensus 198 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 226 (408)
++..+...++.-.|.++|+++.+.+...+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 33333444333444444444444443333
No 396
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.78 E-value=64 Score=24.84 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcCh
Q 015370 73 TNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGI 140 (408)
Q Consensus 73 ~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (408)
.++.+.+.+.|.+++..-. .+++.+.+.++.-.|.++++++.+.+ ...+..|--.-++.+...|-+
T Consensus 6 ~~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCCE
Confidence 4456667788888877654 57788888888899999999999876 455555544446666666643
No 397
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.43 E-value=1.4e+02 Score=26.36 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 221 (408)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 221 (408)
+......++....+.|+.+.-..+++...... +..--..++.+.+...+.+...++++.....
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 44444555555555666554444444444332 4555566666666666666666666666654
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.98 E-value=2.3e+02 Score=28.54 Aligned_cols=191 Identities=15% Similarity=0.179 Sum_probs=108.2
Q ss_pred HHHHHHhcCCCC--CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHhcC
Q 015370 142 SGERYFEGLPLS--AKT---SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL----------MYNEMMTLYMSVG 206 (408)
Q Consensus 142 ~a~~~~~~~~~~--~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----------~~~~li~~~~~~g 206 (408)
+-..++++|..+ .|+ ..+-..++-.|....+++...++.+.+... ||.. .|.-.++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 334456666665 343 556667777788888899999998888874 3221 2333333333567
Q ss_pred CHHHHHHHHHHHHhC-C-CCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370 207 QVEKVALVVEEIKRK-N-VVPDIFTYNLWI-------SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 277 (408)
Q Consensus 207 ~~~~a~~~~~~m~~~-g-~~p~~~~~~~ll-------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 277 (408)
+-++|+.+.-.|.+. | +.||..+..--| +.|...+..+.|.+.|++.-+ +.|+..+--.+...+...|
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhh
Confidence 888888887777654 2 667754322111 123344556777777777654 4565554223333333333
Q ss_pred -chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015370 278 -HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 356 (408)
Q Consensus 278 -~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 356 (408)
.++...+ ++. - ....+.|+ .+.|.+++..++|+-. + .+.+-.-++++.+|.+.
T Consensus 335 ~~Fens~E--lq~---I-----gmkLn~Ll---grKG~leklq~YWdV~----------~---y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 335 EHFENSLE--LQQ---I-----GMKLNSLL---GRKGALEKLQEYWDVA----------T---YFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhccchHH--HHH---H-----HHHHHHHh---hccchHHHHHHHHhHH----------H---hhhhhhhccCHHHHHHH
Confidence 3555555 111 1 12334444 7788888888877632 2 22333345777777777
Q ss_pred HHHHHhhC
Q 015370 357 IDQWKQSA 364 (408)
Q Consensus 357 ~~~~~~~~ 364 (408)
-+.|.+.+
T Consensus 389 ae~mfKLk 396 (1226)
T KOG4279|consen 389 AEMMFKLK 396 (1226)
T ss_pred HHHHhccC
Confidence 77777643
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.59 E-value=78 Score=26.99 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEIK----RKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 253 (408)
.--.+..-|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.+....+-=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33456677888888888888888774 233 2344556667777788888888777665444
No 400
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.46 E-value=1.3e+02 Score=25.49 Aligned_cols=140 Identities=9% Similarity=-0.041 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 015370 232 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 311 (408)
Q Consensus 232 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (408)
--+..|.+.-++.-|-...+++.+ |-. -...+.-|.+..+-.--.+ +++-......+-+.....+++ +..
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE-----PIQ--SRCAiLRysklsd~qiL~R-l~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE-----PIQ--SRCAILRYSKLSDQQILKR-LLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh-----hHH--hhhHhhhhcccCHHHHHHH-HHHHHHHhCCCCCcchHHHhh--hhc
Confidence 345667766677666665555544 211 1223333445444433334 344344444444444444444 467
Q ss_pred cCCHHHHHHHHHHHHh-ccC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370 312 LGNKDKIDQIWKSLRM-TKQ-----------KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 379 (408)
Q Consensus 312 ~~~~~~a~~~~~~m~~-~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (408)
.|+...|+..++.-.. .|. .|.+.....++..|. .+++++|.++++++-+.| ..|. ...+++.+.
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg-ysp~-Dii~~~FRv 281 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLG-YSPE-DIITTLFRV 281 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC-CCHH-HHHHHHHHH
Confidence 8899888887765322 111 444545555666554 578999999999988887 4443 234556666
Q ss_pred HHhcC
Q 015370 380 FSDVG 384 (408)
Q Consensus 380 ~~~~g 384 (408)
+....
T Consensus 282 ~K~~~ 286 (333)
T KOG0991|consen 282 VKNMD 286 (333)
T ss_pred HHhcc
Confidence 55543
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.46 E-value=60 Score=31.29 Aligned_cols=85 Identities=11% Similarity=-0.014 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370 170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 249 (408)
Q Consensus 170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 249 (408)
.|+...|.+.+.........-..+....|.....+.|....|..++.+..... ....-++-.+.+++....++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555554433211122233444445555555556666655554433 22334555556666666666666666
Q ss_pred HHHHhc
Q 015370 250 LDEMSC 255 (408)
Q Consensus 250 ~~~~~~ 255 (408)
|++..+
T Consensus 699 ~~~a~~ 704 (886)
T KOG4507|consen 699 FRQALK 704 (886)
T ss_pred HHHHHh
Confidence 666555
No 402
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.19 E-value=59 Score=23.60 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL 133 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 133 (408)
+++-+.++...++|+++.+.|.++| ..+...-+.|-..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G--EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG--EITPEEAKELRSI 104 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 5666778889999999999999998 4444444444333
No 403
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.15 E-value=1.3e+02 Score=28.51 Aligned_cols=109 Identities=13% Similarity=-0.026 Sum_probs=69.8
Q ss_pred HHHHHcCchhhhHHHHHHHHHHhcccC--------ccchHHHHHHHHHhcCCHHHHHHHHHHHH-------hccCCCCh-
Q 015370 271 NIYITASHLVNAESSTLVEAEKSITQR--------QWITYDFLIILYAGLGNKDKIDQIWKSLR-------MTKQKMTS- 334 (408)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~p~~- 334 (408)
..+.-.|++.+|.+ ++...-...... .-..||.|...+.+.|.+..+..+|.+.. ..|++|..
T Consensus 248 q~eY~~gn~~kA~K-lL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMK-LLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHH-HHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34556788888888 443322111111 22345777666667777777776666554 34554432
Q ss_pred ----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370 335 ----------RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 383 (408)
Q Consensus 335 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (408)
.+||+ .-.|.+.|+.-.|.+.|.+..+. +..++..|-.|..+|...
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 12333 23467889999999999998875 466889999999999764
No 404
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.94 E-value=1.2e+02 Score=24.79 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=67.3
Q ss_pred cCCCCChhhHHHHHHHHHhcccHHHHHHHHH----HHHhccCCCCC----hHHHHHHHHHHHhhcChHHHHHHHhcCCCC
Q 015370 82 EGNQATVSELRHILKELRKSQRYKHALEISE----WMVTHKEFVLS----DSDYATRIDLMTKVFGIHSGERYFEGLPLS 153 (408)
Q Consensus 82 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 153 (408)
.|..++.+.++.++..+.+..-...-+..+- +....+ +.++ ......-+..|-+.|++.+--.+|-..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~-~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv--- 77 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQ-FKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV--- 77 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH---
Confidence 4677888888888887766544333333333 333332 2222 112222234445555554444433322
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHH--------HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370 154 AKTSETYTALLHLYAGAKWTEKA--------EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 225 (408)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~A--------~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 225 (408)
...+.++++- +.+..+-++ +| ...|.....+-++.-+.+++.+.+-
T Consensus 78 -------------~~gce~~~dlq~~~~~va~~Ltkd~Kd---k~-~vPFceFAetV~k~~q~~e~dK~~L--------- 131 (233)
T PF14669_consen 78 -------------KMGCEKFADLQRFCACVAEALTKDSKD---KP-GVPFCEFAETVCKDPQNDEVDKTLL--------- 131 (233)
T ss_pred -------------HhhcCCHHHHHHHHHHHHHHHHhcccc---cC-CCCHHHHHHHHhcCCccchhhhhhh---------
Confidence 2222222222 222222222 12 3445555666555555555443331
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 226 DIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
..+--+++-.|.+.-++.++..+++.|.+
T Consensus 132 -GRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 132 -GRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222355566677777777777776654
No 405
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.79 E-value=1.3e+02 Score=25.20 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370 171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
|-++-|.-=|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+....- ..+...-.-++.-.|++.-|.+=|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHH
Confidence 34444444444444432 2235689999999999999999999999998864332 222222222344568888887766
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370 251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ 330 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 330 (408)
...-+...-.|-...|--++. +.-++.+|..-+.++.. ..|..-|..-|-.|.- |++. ...++++.+...-
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 665553222232222322222 23345566552333322 2233334333322221 1111 1223333332211
Q ss_pred C------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 331 K------MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 331 ~------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
. .-..||--+..-+...|+.++|..+|+-.+..+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0 012356667778888999999999999876643
No 406
>PRK10941 hypothetical protein; Provisional
Probab=54.70 E-value=1.4e+02 Score=25.83 Aligned_cols=79 Identities=8% Similarity=-0.133 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370 301 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 379 (408)
Q Consensus 301 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (408)
..+.+-.+|.+.++++.|+.+.+.+... .|+. .-+.--.-.|.+.|.+..|..=++..++.....|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455666778888888888888888775 3433 233334555788888888888888887765455666555555554
Q ss_pred HH
Q 015370 380 FS 381 (408)
Q Consensus 380 ~~ 381 (408)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.82 E-value=73 Score=22.19 Aligned_cols=54 Identities=13% Similarity=-0.032 Sum_probs=32.2
Q ss_pred HHHcCchhhhHHHHHHHHHHhcccCcc--------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 273 YITASHLVNAESSTLVEAEKSITQRQW--------ITYDFLIILYAGLGNKDKIDQIWKSLRM 327 (408)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 327 (408)
..+.|++..|.+ .+.+..+.....+. ...-.+.......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d-~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALD-ALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888877 56555543222111 1122344456678888888888887654
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.49 E-value=4.2e+02 Score=30.83 Aligned_cols=63 Identities=3% Similarity=-0.099 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 299 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 299 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
..+|-...+...++|+++.|...+-...+.+ -+..+......+-+.|+...|+.++++..+.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4677777777778899988887665544443 23345556667778899999999998887654
No 409
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.08 E-value=2e+02 Score=27.47 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015370 191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 228 (408)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 228 (408)
+...+..++.+....+....|+.++.+|.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 44555556665555555667888888888887766544
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.73 E-value=2e+02 Score=26.52 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=43.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 015370 164 LHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMS--VGQVEKVALVVEEIKRK 221 (408)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~~ 221 (408)
+..+...+++..|.++|+++... ++++.. .+..+..+|.. ..++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455789999999999999987 666655 55666666654 56788999999987764
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.23 E-value=92 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 220 (408)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 567777777777777777777777665
No 412
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.98 E-value=89 Score=30.60 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 214 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
..+.+...-...+...-.-++..|.+.|-.+.+.++.+.+-.+ - ....-|...+..+.++|+......
T Consensus 392 ~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~--~~~~~~g~AL~~~~ra~d~~~v~~ 459 (566)
T PF07575_consen 392 RIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR-L--LKEGRYGEALSWFIRAGDYSLVTR 459 (566)
T ss_dssp HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH----------
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHCCCHHHHHH
Confidence 3333333323334555566667777777777777776665543 1 122335555566666666655555
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.81 E-value=1.9e+02 Score=25.98 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 015370 159 TYTALLHLYAGAKWTEKAEELFERVKQS---NLSFNALMY--NEMMTLYMSVGQVEKVALVVEEIKR-----KNVVPDIF 228 (408)
Q Consensus 159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 228 (408)
....++...-+.++.++|++.++++.+. .-.|+.+.| ..+.+.+...|+.+++.+++++.+. .|++|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555556667888888888887653 124555555 3445556677888888888887776 56766543
No 414
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.39 E-value=38 Score=21.86 Aligned_cols=50 Identities=6% Similarity=-0.047 Sum_probs=30.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370 332 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 383 (408)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (408)
|+...++.++..+++-.-.++++..+.+..+.|.+ +..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I--~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI--DLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 45555666777777766777777777777766633 555666556655553
No 415
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.34 E-value=1.7e+02 Score=25.32 Aligned_cols=90 Identities=11% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHHhhcChHHHHHHHhcCCCC-------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CC-CCCChhhHHH
Q 015370 130 RIDLMTKVFGIHSGERYFEGLPLS-------AKTSETYTALLHLYAGAKWTEKAEELFERVKQ----SN-LSFNALMYNE 197 (408)
Q Consensus 130 li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~-~~p~~~~~~~ 197 (408)
++....+.+++++....|.++..- .-+..+.|++++....+.+.+...+.|+.-++ .. -..-..|-.-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 344445555555544444443221 22344555555555555554444444433221 10 0000112234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 015370 198 MMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 198 li~~~~~~g~~~~a~~~~~~m~ 219 (408)
|...|...|.+.+..+++.++.
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.20 E-value=35 Score=29.82 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 015370 155 KTSET-YTALLHLYAGAKWTEKAEELFERVKQSNLSF 190 (408)
Q Consensus 155 ~~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 190 (408)
+|... |+.-|....+.||+++|++++++.++.|+.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 45444 6799999999999999999999999999643
No 417
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=49.51 E-value=2.7e+02 Score=27.54 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL 188 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 188 (408)
.+..|+.. .+.=+.++-.++++++.........+..+++++..+|--+.+.-+.+.+....+
T Consensus 348 ~f~~Lv~~-lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 348 KFSRLVRL-LRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHHHHHHH-HTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 34444443 344456667777777664223567788888888888876666555555555443
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.86 E-value=62 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=10.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 015370 200 TLYMSVGQVEKVALVVEEIKR 220 (408)
Q Consensus 200 ~~~~~~g~~~~a~~~~~~m~~ 220 (408)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555555554
No 419
>PRK09857 putative transposase; Provisional
Probab=48.83 E-value=1.2e+02 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 403 (408)
.++....+.++.++..++++.+.+.. ++......++..-+.+.|.-+++.++.++|...|+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33433344455544555554444321 1122223344444555555555666666666666543
No 420
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.18 E-value=3.4e+02 Score=27.93 Aligned_cols=329 Identities=12% Similarity=0.083 Sum_probs=163.8
Q ss_pred cchHHHHHhhhcCCCCcHHHHHHHHHHcCCCC-------ChhhHHHHHHHHHhccc----HHHHHH----HHHHHHhccC
Q 015370 55 KDDLKSRIFRISLPKRSATNVIQRWVSEGNQA-------TVSELRHILKELRKSQR----YKHALE----ISEWMVTHKE 119 (408)
Q Consensus 55 ~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~-------~~~~~~~li~~~~~~~~----~~~a~~----~~~~~~~~~~ 119 (408)
..++++++.. .++..++++++...|... .-..|..++.-+.+..- ..+..+ ..++..+.|
T Consensus 287 ~~eL~~~Ltg----~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g- 361 (894)
T COG2909 287 NDELCNALTG----EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHG- 361 (894)
T ss_pred hHHHHHHHhc----CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCC-
Confidence 4445555543 457788899999888543 23345666655544321 112222 223344444
Q ss_pred CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC---C-------------CCH------HHHHHHHHHHHcCCCHHHHH
Q 015370 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS---A-------------KTS------ETYTALLHLYAGAKWTEKAE 177 (408)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~-------------~~~------~~~~~ll~~~~~~~~~~~A~ 177 (408)
.|+. .|.-..+.|+++.|..++++.... + |+. ..--.-+.......++++|.
T Consensus 362 -~~~e-----AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~ 435 (894)
T COG2909 362 -LPSE-----AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAE 435 (894)
T ss_pred -ChHH-----HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHH
Confidence 2332 233345667777776666654211 0 111 11111123334567899999
Q ss_pred HHHHHHHhCCCCCC----hh---hHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHH
Q 015370 178 ELFERVKQSNLSFN----AL---MYNEMMTL-YMSVGQVEKVALVVEEIKRK----NVVPDIFTYNLWISSCAATLNIDQ 245 (408)
Q Consensus 178 ~~~~~m~~~~~~p~----~~---~~~~li~~-~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~~ 245 (408)
.+..++...--.|+ .. .|+.+-.. ....|++++|.++-+..... -..+....+..+..+..-.|++++
T Consensus 436 ~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~ 515 (894)
T COG2909 436 TLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQ 515 (894)
T ss_pred HHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHH
Confidence 99888765422222 22 33333222 23578899999988776643 233455667777778888899999
Q ss_pred HHHHHHHHhcCCCCCCCHHH---HHHHH--HHHHHcCchhhhHHH-HHHHHHHh-cc-cC----ccchHHHHHHHHHhc-
Q 015370 246 VKKFLDEMSCDSGGSDDWVK---YVNLV--NIYITASHLVNAESS-TLVEAEKS-IT-QR----QWITYDFLIILYAGL- 312 (408)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~~~~~~a~~~-~~~~~~~~-~~-~~----~~~~~~~li~~~~~~- 312 (408)
|..+.++..+. .-..+... |..+. ..+...|+...+... .+...... .. +| -..++..+..++.+.
T Consensus 516 Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~ 594 (894)
T COG2909 516 ALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLD 594 (894)
T ss_pred HHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh
Confidence 99888776552 11222222 22332 224455533222220 12222111 11 11 123344444444441
Q ss_pred CCHHHHHHHHHHHHhccCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHH--HhcCC
Q 015370 313 GNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSAT---SDFDISACNRLLGAF--SDVGL 385 (408)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~li~~~--~~~g~ 385 (408)
+...++..-++--......|-...+ ..|.......|+.++|...++++..... ..++...-...+... ...|+
T Consensus 595 ~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~ 674 (894)
T COG2909 595 LAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGD 674 (894)
T ss_pred hhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCC
Confidence 1112222222221222222222222 2577788889999999999999876431 122222222223222 34677
Q ss_pred hHHHHHHHHH
Q 015370 386 TEKANEFHML 395 (408)
Q Consensus 386 ~~~a~~~~~~ 395 (408)
.+.+.....+
T Consensus 675 ~~~a~~~l~~ 684 (894)
T COG2909 675 KELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHh
Confidence 7777666554
No 421
>PRK14136 recX recombination regulator RecX; Provisional
Probab=46.67 E-value=2.1e+02 Score=25.30 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHH
Q 015370 195 YNEMMTLYMSVG-QVEKVALVVEE 217 (408)
Q Consensus 195 ~~~li~~~~~~g-~~~~a~~~~~~ 217 (408)
..-++..+...| .++.+..+++.
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 444455555554 34444444443
No 422
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.34 E-value=1.2e+02 Score=24.05 Aligned_cols=38 Identities=3% Similarity=-0.226 Sum_probs=17.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
..++.-.|.++++.+.+.+..++..|..--|+.+...|
T Consensus 37 ~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 37 LQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred hcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344445555555555544444444333444444444
No 423
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.18 E-value=20 Score=19.34 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHh
Q 015370 350 LKEVGEIIDQWKQ 362 (408)
Q Consensus 350 ~~~A~~~~~~~~~ 362 (408)
++.|..+|++.+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 424
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.09 E-value=1.2e+02 Score=22.58 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370 142 SGERYFEGLPLSA---KTSETYTALLHLYAGAKWTEKAEELFER 182 (408)
Q Consensus 142 ~a~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 182 (408)
.+.++|..|...+ .-...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4444454444331 2344555555555555555555555543
No 425
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.37 E-value=2.1e+02 Score=25.04 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-cCchhhhH-HHHHHHHHHh-cccCccchHHHHHHHHHhcCCHHHH
Q 015370 242 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLVNAE-SSTLVEAEKS-ITQRQWITYDFLIILYAGLGNKDKI 318 (408)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~-~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a 318 (408)
.+.+|+.+|+....+..+.-|..+...+++.... .+..-.|. + +..-+... +..++..+...++..++..+++.+.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE-vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE-VVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH-HHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 4556666666433212345566666666666665 22211111 2 22222221 2344555666777888888888888
Q ss_pred HHHHHHHHhc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 319 DQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359 (408)
Q Consensus 319 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (408)
.++|..-... +..-|...|..+|+.....|+..-...+.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888765444 4455777788888888888887666666554
No 426
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=45.34 E-value=2.9e+02 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 015370 233 WISSCAATLNIDQVKKFLDEMS 254 (408)
Q Consensus 233 ll~~~~~~g~~~~a~~~~~~~~ 254 (408)
++.-|.+.+++++|..++..|.
T Consensus 414 L~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCC
Confidence 4445555555555555555554
No 427
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=45.19 E-value=3.1e+02 Score=27.92 Aligned_cols=198 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHhc
Q 015370 187 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA-----------ATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 187 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-----------~~g~~~~a~~~~~~~~~ 255 (408)
+.-+.......++.++...|+++.|.+++..-... .-+.......++.+.- ..|.+..|.++++-+..
T Consensus 427 ~~l~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~-~l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~ 505 (715)
T PF08314_consen 427 GCLSKDEIEEIFLEALLSSGRFSLAKSLYEESSSS-PLSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPP 505 (715)
T ss_dssp TTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccC
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC----HHHHHHHHHHHHhc---
Q 015370 256 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN----KDKIDQIWKSLRMT--- 328 (408)
Q Consensus 256 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~--- 328 (408)
...-.+...-...|+.+.....++.-..+ -=..+.-........-...+-..+..+.+ .++..++...|...
T Consensus 506 ~~~~~~~~~~~~~Li~a~~~Ls~f~l~l~-~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~~~~~ 584 (715)
T PF08314_consen 506 TFPNSPRIQREKDLIKATHALSEFSLVLQ-PGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVLAGSD 584 (715)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTS------------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHHH---
T ss_pred cCCccHHHHHHHHHHHHHHHHHhCCeecC-CCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHHHhcc
Q ss_pred ------cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCh
Q 015370 329 ------KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS-ACNRLLGAFSDVGLT 386 (408)
Q Consensus 329 ------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~ 386 (408)
...-........|++-...+|++-|.+...++.+.....++.. .+...=.+|.+.|++
T Consensus 585 ~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~ 649 (715)
T PF08314_consen 585 ESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKY 649 (715)
T ss_dssp --TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCC
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.03 E-value=1.2e+02 Score=29.88 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVE------KVALVVEEIKRKNVVPDIFTYNLW 233 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 233 (408)
+|+.+|...|++-.+.++++.....+ -+.=...||..|+-..+.|.++ .|.+.+++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 89999999999999999999988653 2223457888888889999754 3444444444 55588899998
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc
Q 015370 234 ISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 234 l~~~~~~g~~~~a~~~~~~~~~ 255 (408)
+.+....-+-....-++.+..+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8877665444555555555554
No 429
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.88 E-value=84 Score=20.29 Aligned_cols=52 Identities=2% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc
Q 015370 85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF 138 (408)
Q Consensus 85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (408)
.|....++.++...++..-.+.++..+.+....| ..+..+|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence 4666778889999999999999999999999988 456777777777776643
No 430
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.85 E-value=3.4e+02 Score=27.33 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370 173 TEKAEELFERVKQSNLSFNALMY-NEMMTLYMSVGQVEKVALVVEEIK-RKNVVPDIFTYNLWISSCAATLNIDQVKKFL 250 (408)
Q Consensus 173 ~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 250 (408)
+.+.+...+.+.+..-.|+..+- -.+=..|...|++++|+++--... ...+.++...+.+++.-|... -.+++.+.+
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~ 117 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETY 117 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHh
Confidence 44455556666555434433322 233346777888888887754443 334666667777766655421 234555555
Q ss_pred HHHhcCCCCCCCHH-HHHHHHHHHHHcCchhhhHHHHHHHHH-----Hh-cccC--ccchHHHHHHHHHhcCC-HHHHHH
Q 015370 251 DEMSCDSGGSDDWV-KYVNLVNIYITASHLVNAESSTLVEAE-----KS-ITQR--QWITYDFLIILYAGLGN-KDKIDQ 320 (408)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~--~~~~~~~li~~~~~~~~-~~~a~~ 320 (408)
+.-.+..++.+-.. ..+-++..|...+++..|+- +.-+.. +. ..+. +....+.++..+....+ -+--.+
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiG-ia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIG-IAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHh-HHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Confidence 53332122222222 24566666767777777776 333222 22 1111 11233334444433332 222223
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370 321 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 381 (408)
Q Consensus 321 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 381 (408)
+++.+.+.=.+....-|..+.++|....+.+.|.++++++.+.. .....|..-...+-
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~---~~llayQIAFDL~e 254 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKED---DLLLAYQIAFDLYE 254 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcc---hhhhHHHHHHHHhh
Confidence 33333322111122234457777888888888888888887632 13344544444333
No 431
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=44.50 E-value=1e+02 Score=22.17 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCCCCC-CHH
Q 015370 244 DQVKKFLDEMSCDSGGSD-DWV 264 (408)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~-~~~ 264 (408)
+++.+.+.+++...|+.| ++.
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~Nil 26 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNIL 26 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHH
Confidence 456777777777777777 444
No 432
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.93 E-value=2.9e+02 Score=26.18 Aligned_cols=209 Identities=9% Similarity=-0.011 Sum_probs=97.0
Q ss_pred HHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHH
Q 015370 128 ATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL-----YAGAKWTEKAEELFERVKQSNLSFNA---LMYNEM 198 (408)
Q Consensus 128 ~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~-----~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l 198 (408)
.+.+...++.|+.+-+..+++.-..-. .+.. ....+.. .+..|..+ +.+.+.+.|..++. ...+.+
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~-~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tpL 110 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDNGADINSSTKN-NSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITPL 110 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHcCCCCCCcccc-CcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCchh
Confidence 345566678888888877776543211 1222 2233444 44445544 44445556644432 234444
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCCCHHH--HHHHHH
Q 015370 199 MTLYM-SVGQVEKVALVVEEIKRKNVVPDIFT--YNLWISSCAATL--NIDQVKKFLDEMSCDSGGSDDWVK--YVNLVN 271 (408)
Q Consensus 199 i~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~ 271 (408)
..+.. ..|+.+-+ +.+.+.|..++... -.+.+..++..| +.+-+..++ + .|..++... -.+.+.
T Consensus 111 ~~A~~~~~~~~~iv----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll----~-~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 111 LYAISKKSNSYSIV----EYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI----D-KGVDINAKNRYGYTPLH 181 (480)
T ss_pred hHHHhcccChHHHH----HHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH----H-CCCCcccccCCCCCHHH
Confidence 44443 55665443 44445565543321 223455555666 555443333 3 243332221 124456
Q ss_pred HHHHcCchhhhHHHHHHHHHHhcccCccchH--------HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChh---hHHHH
Q 015370 272 IYITASHLVNAESSTLVEAEKSITQRQWITY--------DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR---NYICI 340 (408)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l 340 (408)
..+..|+.+-+.- +.+.+..++.... ...+...+..|+ ...++.+.+.+.|..++.. -.+.|
T Consensus 182 ~A~~~~~~~iv~~-----Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL 254 (480)
T PHA03100 182 IAVEKGNIDVIKF-----LLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL 254 (480)
T ss_pred HHHHhCCHHHHHH-----HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 6666776554444 4445554442210 233333344555 1123334445566655433 23333
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 015370 341 LSSYLMLGHLKEVGEIID 358 (408)
Q Consensus 341 i~~~~~~g~~~~A~~~~~ 358 (408)
...+..|+.+-+..+++
T Consensus 255 -~~A~~~~~~~iv~~Ll~ 271 (480)
T PHA03100 255 -HYAVYNNNPEFVKYLLD 271 (480)
T ss_pred -HHHHHcCCHHHHHHHHH
Confidence 34455667554444443
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.85 E-value=1.4e+02 Score=27.59 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC-----C-CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Q 015370 230 YNLWISSCAATLNIDQVKKFLDEMSCDSG-----G-SDDWVKYVNLVNIYITASHLVNAESSTLVEAE 291 (408)
Q Consensus 230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 291 (408)
...+++.++-.||+..|+++++.+.-... + .-...+|--+.-+|.-.+++.+|.+ .|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir-~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR-TFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34555666677777777777765532100 1 1122345556666677777777777 555443
No 434
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.80 E-value=2.4e+02 Score=25.30 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCCHHHH--HHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370 232 LWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKY--VNLVNIYITASHLVNAESSTLVEAEK 292 (408)
Q Consensus 232 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~ 292 (408)
.++...-+.++.++|.++++++.+.. --.|+...| .....++...|+..++.+ ++.+..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk-~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKK-LLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHH-HHHHHHH
Confidence 34444555667777777777777632 223444444 345556666777777777 6666655
No 435
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.73 E-value=2.9e+02 Score=26.16 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCCChhhH--HHHHHH-----HHhcccHHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHH-hhcChH
Q 015370 73 TNVIQRWVSEGNQATVSEL--RHILKE-----LRKSQRYKHALEISEWMVTHKEFVLS---DSDYATRIDLMT-KVFGIH 141 (408)
Q Consensus 73 ~~~l~~~~~~g~~~~~~~~--~~li~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~-~~g~~~ 141 (408)
.++++.+.+.|..|+.... ...+.. ....|+.+ +.+.+.+.| ..++ ....+.+..+.. ..|+.+
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~g-a~i~~~d~~g~tpL~~A~~~~~~~~~ 122 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYG-ANVNAPDNNGITPLLYAISKKSNSYS 122 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCC-CCCCCCCCCCCchhhHHHhcccChHH
Confidence 4566667777766554321 123333 34444443 334444444 3322 222333333332 667777
Q ss_pred HHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 142 SGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVGQVEKVALVVEEI 218 (408)
Q Consensus 142 ~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m 218 (408)
-+..+++.-... ..+..-+ +.+...+..|. .-.++++.+.+.|..++... -.+.+...+..|+.+-+.. +
T Consensus 123 iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~----L 195 (480)
T PHA03100 123 IVEYLLDNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKF----L 195 (480)
T ss_pred HHHHHHHcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHH----H
Confidence 666666543221 1222222 33444455551 12234445555665443321 1233445556665544433 3
Q ss_pred HhCCCCCC
Q 015370 219 KRKNVVPD 226 (408)
Q Consensus 219 ~~~g~~p~ 226 (408)
.+.|..|+
T Consensus 196 l~~ga~~~ 203 (480)
T PHA03100 196 LDNGADIN 203 (480)
T ss_pred HHcCCCcc
Confidence 44454443
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.13 E-value=2.8e+02 Score=25.84 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370 206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISS 236 (408)
Q Consensus 206 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 236 (408)
++.+.|+..+..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444444444444444443333333333
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.07 E-value=2.7e+02 Score=25.70 Aligned_cols=166 Identities=10% Similarity=0.006 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCC
Q 015370 157 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---------NVVP 225 (408)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p 225 (408)
...+.-+..-|..+|+++.|++.|.+.++-- .+-.+..|-.+|..-.-.|+|.....+..+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567788889999999999999999966531 1112445667777777889988888777766654 1233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-----CCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccc
Q 015370 226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG-----GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI 300 (408)
Q Consensus 226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 300 (408)
-..++..+...+. +++..|...|-....... +.|+..+.-..+.+++.-++-+--+.++-...++........
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 3344444444333 366666666554443212 223333333333444444433333231111111222222333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 301 TYDFLIILYAGLGNKDKIDQIWKSLR 326 (408)
Q Consensus 301 ~~~~li~~~~~~~~~~~a~~~~~~m~ 326 (408)
.+..+..-| .+++...++++++++
T Consensus 308 lr~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 308 LREILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHhc
Confidence 444444333 356777777777654
No 438
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=42.93 E-value=25 Score=22.51 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHhccCCCCChH
Q 015370 102 QRYKHALEISEWMVTHKEFVLSDS 125 (408)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~~~~~~ 125 (408)
-+++.|+..|..+...|.++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 478899999999998886776643
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.92 E-value=21 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=16.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCC
Q 015370 382 DVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
..|.-.+|-.+|++|++.|-.||.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc
Confidence 345556677777777777777764
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.90 E-value=2.4e+02 Score=24.95 Aligned_cols=80 Identities=5% Similarity=-0.190 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370 208 VEKVALVVEEIKRKNV----VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283 (408)
Q Consensus 208 ~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (408)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhhhccCCHHHHH
Confidence 3455555655554311 223344444455555555555444444444432 24444556666666666655555
Q ss_pred HHHHHHHHH
Q 015370 284 SSTLVEAEK 292 (408)
Q Consensus 284 ~~~~~~~~~ 292 (408)
+ ++.....
T Consensus 222 ~-~l~~~l~ 229 (324)
T PF11838_consen 222 R-LLDLLLS 229 (324)
T ss_dssp H-HHHHHHC
T ss_pred H-HHHHHcC
Confidence 5 5555444
No 441
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=42.82 E-value=1.1e+02 Score=20.98 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHH
Q 015370 72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGE 144 (408)
Q Consensus 72 a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 144 (408)
+.+++..+. -.+......+-......|+.+.|..+++.+. ++ +..|..++.++..+|.-+-|.
T Consensus 20 ~~~il~~L~----~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~-----~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 20 VEEVLPYLT----CLTAEDKERIQAAENNSGNIKAAWTLLDTLV-RR-----DNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHhhCC----cCCHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc-----CChHHHHHHHHHHcCCHHHHH
Confidence 344444443 3344445555555556677888888888777 44 556677777777777655553
No 442
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=42.64 E-value=2.7e+02 Score=25.55 Aligned_cols=100 Identities=16% Similarity=0.011 Sum_probs=52.1
Q ss_pred HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHH------------HHHHHhcCCHHHHHHHHHHHHhccC-CCCh
Q 015370 268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL------------IILYAGLGNKDKIDQIWKSLRMTKQ-KMTS 334 (408)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~ 334 (408)
.|...+-..|++++|.. ++.+. .+.||.++ +..|...+++-.|.-+-+++...-+ .|+.
T Consensus 136 ~L~~ike~~Gdi~~Aa~-il~el-------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAAD-ILCEL-------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHcCCHHHHHH-HHHhc-------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 45555666677777766 44332 22233322 3344555666665555444433322 2332
Q ss_pred h-----hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370 335 R-----NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 375 (408)
Q Consensus 335 ~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 375 (408)
. -|..+++...+.+.+=.+.+.++..-..+.++.|..-|..
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 2 2666666666777777777777766655544444444433
No 443
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.61 E-value=2.5e+02 Score=25.10 Aligned_cols=20 Identities=5% Similarity=-0.095 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 015370 233 WISSCAATLNIDQVKKFLDE 252 (408)
Q Consensus 233 ll~~~~~~g~~~~a~~~~~~ 252 (408)
...-||+.|+.+.|.+.++.
T Consensus 110 kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 34445555555555555543
No 444
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.58 E-value=4.2e+02 Score=27.69 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015370 315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 394 (408)
Q Consensus 315 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 394 (408)
.+.-.+.|.++..-=-.-|..++..-..-+...|++-.|.+++.++++.....++...|.-++..+...| |.....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg-w~H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG-WNHLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC-chHhHHHHh
Confidence 4444555555544322335666666666677789999999999999886666778888877777777777 555566666
Q ss_pred HHHh
Q 015370 395 LLLQ 398 (408)
Q Consensus 395 ~m~~ 398 (408)
.+..
T Consensus 1291 ~~~~ 1294 (1304)
T KOG1114|consen 1291 NWMR 1294 (1304)
T ss_pred hhee
Confidence 6654
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.81 E-value=50 Score=16.78 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 348 GHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 348 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
|+.+.|..+|+++.+.. +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHHH
Confidence 46777888888887754 245666655443
No 446
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.43 E-value=2.1e+02 Score=23.96 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=32.2
Q ss_pred CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHH--HHHHHHHhhcChHHHHHHHhcCC
Q 015370 84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYA--TRIDLMTKVFGIHSGERYFEGLP 151 (408)
Q Consensus 84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~ 151 (408)
..++...+|.|+--|.-...+.+|-+.|..-........|..+++ ..|......|++++|.+....+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 444555555555555555555555555443322110012333332 23444566666666666665554
No 447
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.39 E-value=1.1e+02 Score=20.69 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=23.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhccCCC
Q 015370 93 HILKELRKSQRYKHALEISEWMVTHKEFV 121 (408)
Q Consensus 93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 121 (408)
++++-+.++.--++|+++++.+.++|.+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~ 64 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEIT 64 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCC
Confidence 35666777888899999999999998443
No 448
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.09 E-value=2.4e+02 Score=25.40 Aligned_cols=63 Identities=8% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 015370 141 HSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 203 (408)
Q Consensus 141 ~~a~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 203 (408)
+++..+++++...-|+ +.-|-.+++.....|.++.++.+|++....|-.|=...-.++++.+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4556666655544344 45566777777777777777777777777776665555555555443
No 449
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.94 E-value=59 Score=21.95 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCH
Q 015370 339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 370 (408)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 370 (408)
++++-+.++.-.++|+++++-|.+.|.+.|..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~E~ 67 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITPEM 67 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHH
Confidence 46777888888899999999998888665543
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.54 E-value=2.1e+02 Score=25.33 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH----------HcCchhh
Q 015370 212 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI----------TASHLVN 281 (408)
Q Consensus 212 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~ 281 (408)
.++|+.|...++.|.-++|.-+.-.+.+.=.+..++.+++.+..+ ... |..|+..|| -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467778888888888888777666667777778888888888774 211 444444443 3577877
Q ss_pred hHHHHHHH
Q 015370 282 AESSTLVE 289 (408)
Q Consensus 282 a~~~~~~~ 289 (408)
..+ +++.
T Consensus 337 nmk-LLQ~ 343 (370)
T KOG4567|consen 337 NMK-LLQN 343 (370)
T ss_pred HHH-HHhc
Confidence 777 6665
No 451
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=40.41 E-value=1.7e+02 Score=22.57 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=21.4
Q ss_pred chHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 015370 300 ITYDFLIILYAGLGN-KDKIDQIWKSLRMTKQKMTSRNYICILSSYLM 346 (408)
Q Consensus 300 ~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (408)
..|.+++.+.++..- --.+..+|.-|++.+.++++.-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 344444444433332 22334444555544445555555555555443
No 452
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.34 E-value=3.5e+02 Score=26.14 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCchhhhHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 015370 266 YVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 333 (408)
Q Consensus 266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 333 (408)
...++.-|.+.+++++|.. ++..|.=.. ..-...+.+.+.+.+.+..--++.+..++.+...=..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~-lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAIN-LLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred HHHHHHHHHhcCCHHHHHH-HHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Confidence 3468889999999999999 776652111 011122344455556666555556666666554434343
No 453
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.34 E-value=79 Score=22.96 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 351 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 351 (408)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555666678888888888777777777666777777776543
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.76 E-value=1.3e+02 Score=20.74 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 219 (408)
Q Consensus 178 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 219 (408)
++|+-....|+..|...|..++....-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444555555555444
No 455
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.68 E-value=2.2e+02 Score=26.86 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHcC--CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcC
Q 015370 73 TNVIQRWVSEG--NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL 150 (408)
Q Consensus 73 ~~~l~~~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 150 (408)
+++.+.+.+.| +..+..|=..=+.+.|--|+++-+.-+.+.--.-. -+|....+.|+-++.+ |..+-|.-+++.-
T Consensus 97 l~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~--IanrhGhTcLmIa~yk-Gh~~I~qyLle~g 173 (615)
T KOG0508|consen 97 LEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE--IANRHGHTCLMIACYK-GHVDIAQYLLEQG 173 (615)
T ss_pred HHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCc--ccccCCCeeEEeeecc-CchHHHHHHHHhC
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015370 151 PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN-EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT 229 (408)
Q Consensus 151 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 229 (408)
..-.....-=|+-+.-|+.+|.+| +.+.+.+.|.+.+..-|. +=+.+-...|..+-+..+.+ ..++...
T Consensus 174 ADvn~ks~kGNTALH~caEsG~vd----ivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~------~~~sr~~ 243 (615)
T KOG0508|consen 174 ADVNAKSYKGNTALHDCAESGSVD----IVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ------CETSRES 243 (615)
T ss_pred CCcchhcccCchHHHhhhhcccHH----HHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc------CCcchhh
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHcCchhhhHHH---------------
Q 015370 230 YNLWISSCA-----ATLNIDQVKKFLDEMSCD----SGGSDDWVKYVNLVNIYITASHLVNAESS--------------- 285 (408)
Q Consensus 230 ~~~ll~~~~-----~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~--------------- 285 (408)
----+..+. +..|.-.|..+|.+..+. ....+...+. ..+.+|..........++
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaL 322 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLAYGYGREVNNREELEELVEDPDEMRMQAL 322 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-CchhhhhhhhhcCCHHHHHHHhcChHHHHHHHH
Q ss_pred HHHHHHHhcccCccchH-HHHHHHHHhcCCHHHHHHHHH---HHHhccCCC-ChhhHHHHHH
Q 015370 286 TLVEAEKSITQRQWITY-DFLIILYAGLGNKDKIDQIWK---SLRMTKQKM-TSRNYICILS 342 (408)
Q Consensus 286 ~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~---~m~~~~~~p-~~~~~~~li~ 342 (408)
++.+-.-....||+..| ..-...|+..|+++...++|. .|+++.+.| ++.|-.++++
T Consensus 323 iirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~sslls 384 (615)
T KOG0508|consen 323 IIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLS 384 (615)
T ss_pred HHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH
No 456
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.58 E-value=4.2e+02 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=17.7
Q ss_pred cCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHh
Q 015370 82 EGNQATVSELRHILKELRKSQRYKHALEISEWMVT 116 (408)
Q Consensus 82 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 116 (408)
.|+..+......++.. ..|+...|+.++++...
T Consensus 199 Egi~~d~eAL~~IA~~--A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 199 EGIAHEVNALRLLAQA--AQGSMRDALSLTDQAIA 231 (700)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 4555555544433322 45666667666665443
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.45 E-value=1.9e+02 Score=23.78 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhcc
Q 015370 89 SELRHILKELRKSQRYKHALEISEWMVTHK 118 (408)
Q Consensus 89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 118 (408)
...+.++..+.-.|+++.|-++|.-+....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 456789999999999999999999998764
No 458
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.18 E-value=1.2e+02 Score=20.11 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=16.3
Q ss_pred ChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHc
Q 015370 139 GIHSGERYFEGLPLS-AKTSETYTALLHLYAG 169 (408)
Q Consensus 139 ~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~ 169 (408)
+.+.|..++..+... ..+...||++...+.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 345555555555544 2455566655554443
No 459
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.05 E-value=1.9e+02 Score=22.29 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 278 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (408)
.-.|.++++.+.+. +...+..|.--.+..+...|-
T Consensus 33 h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCC
Confidence 33444444444442 333334443333344444443
No 460
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.98 E-value=2.8e+02 Score=24.32 Aligned_cols=153 Identities=10% Similarity=0.073 Sum_probs=80.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCChH-------HHHHHHHHHHhhcChHHHHHHHhcCCCC------CCCHHHH
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDS-------DYATRIDLMTKVFGIHSGERYFEGLPLS------AKTSETY 160 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ 160 (408)
+.+-..+.+++++|+..+.++...| +..+.. +...+...|...|+...--+........ +..+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg-~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKG-VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCC-CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3444556677777777777777765 444432 3444566677777655443333222111 2345555
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHH----HHHhCCCCCCHHHH
Q 015370 161 TALLHLYAGA-KWTEKAEELFERVKQSNLSFN-----ALMYNEMMTLYMSVGQVEKVALVVE----EIKRKNVVPDIFTY 230 (408)
Q Consensus 161 ~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~g~~p~~~~~ 230 (408)
.+|+..+-.. ..++.-+.+.....+...+.. ...-.-++..+.+.|++.+|+.+.. ++++..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 6666655443 335555555555444321111 1223456778888899888887654 44444455554443
Q ss_pred HHH-HHHHHhcCCHHHHH
Q 015370 231 NLW-ISSCAATLNIDQVK 247 (408)
Q Consensus 231 ~~l-l~~~~~~g~~~~a~ 247 (408)
..+ -.+|....+..++.
T Consensus 168 hllESKvyh~irnv~Ksk 185 (421)
T COG5159 168 HLLESKVYHEIRNVSKSK 185 (421)
T ss_pred hhhhHHHHHHHHhhhhhh
Confidence 332 12344444444433
No 461
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=37.44 E-value=1.3e+02 Score=22.74 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC
Q 015370 73 TNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS 123 (408)
Q Consensus 73 ~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 123 (408)
...++...+.|..-.-..+..++--+.-.|+++.|+++.+...++|-..|+
T Consensus 33 ~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 33 LPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred HHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 344555555554333345556777778888888888888888888733343
No 462
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=37.36 E-value=1.3e+02 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCCCCC-CHH
Q 015370 244 DQVKKFLDEMSCDSGGSD-DWV 264 (408)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~-~~~ 264 (408)
+++.+.+.+++...|+.| ++.
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil 27 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNIL 27 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHH
Confidence 456666677766667766 444
No 463
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=37.15 E-value=1.3e+02 Score=25.65 Aligned_cols=17 Identities=0% Similarity=0.067 Sum_probs=9.4
Q ss_pred hcCCHHHHHHHHHHHhc
Q 015370 239 ATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 239 ~~g~~~~a~~~~~~~~~ 255 (408)
+.++.+.+..+.+.+.+
T Consensus 204 ~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 204 KRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 33666666666555544
No 464
>PRK10941 hypothetical protein; Provisional
Probab=36.87 E-value=2.8e+02 Score=24.06 Aligned_cols=70 Identities=10% Similarity=-0.133 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH
Q 015370 195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 265 (408)
Q Consensus 195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 265 (408)
.+.+-.+|.+.++++.|+.+.+.+...... |..-+.--.-.|.+.|.+..|..=++...+...-.|+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 455666677788888888888877774322 3444555555677777777777777666654333344443
No 465
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.74 E-value=71 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370 304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349 (408)
Q Consensus 304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (408)
.++..+...+..-.|.++++.|.+.+..++..|.-.-++.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4455555555566777777777777666666665555555555553
No 466
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=36.58 E-value=1.4e+02 Score=20.58 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHhhcChHHHH
Q 015370 71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT-HKEFVLSDSDYATRIDLMTKVFGIHSGE 144 (408)
Q Consensus 71 ~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~ 144 (408)
.+.+++..+.. -.+......+.......|+.+.|..+++.+.. .+ +..+..++.++-.+|.-.-|.
T Consensus 20 ~p~~il~~l~~---~L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~-----~~wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 20 IPRDILDHLPE---CLTDEDKEQILAEERNKGNIAAAEELLDRLERCDK-----PGWFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred CHHHHHHHHHH---HcCHHHHHHHHHHHhccChHHHHHHHHHHHHHhcc-----CCcHHHHHHHHHHcCCccHHH
Confidence 44555555554 23334444455444445788888888888876 43 556777788887777655443
No 467
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.27 E-value=53 Score=23.08 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370 346 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405 (408)
Q Consensus 346 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 405 (408)
+..+++.|..+|.++.+.|....+ .+..+...+..-++.+-- .++..=.+.-+.|++
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll~e~--~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRCDET--NFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCCccc--hHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 445566666666666666644333 333455555555555543 444444444555554
No 468
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.79 E-value=32 Score=31.65 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCC
Q 015370 347 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407 (408)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 407 (408)
...+++|+++.++..+.+ +|-.. |-...|.+++.++.++|+.||..|
T Consensus 216 a~~ldeAl~~a~~~~~ag--~p~SI------------gl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 216 AETLDEALALAEEATAAG--EPISI------------GLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred cCCHHHHHHHHHHHHhcC--CceEE------------EEeccHHHHHHHHHHcCCCCceec
Confidence 456666766666666554 22211 223345667777777777776654
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.74 E-value=93 Score=22.58 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 206 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
+..-.|.++++.+.+.+..++..|..-.|+.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333344445555544444444444433444444444
No 470
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=35.34 E-value=1.3e+02 Score=22.76 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=11.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC
Q 015370 308 LYAGLGNKDKIDQIWKSLRMTKQ 330 (408)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~ 330 (408)
.+...|+++.|+++.+...+.|.
T Consensus 57 W~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 57 WLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhhcccCHHHHHHHHHHHHHcCC
Confidence 34445555555555555554443
No 471
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.08 E-value=2.7e+02 Score=23.21 Aligned_cols=61 Identities=10% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370 315 KDKIDQIWKSLRMTKQKMTS-----RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 375 (408)
Q Consensus 315 ~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 375 (408)
...|.+.|.+..+..-.|.. ...-.+.....+.|+.++|.+.|.+++..+....+...-+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~ 206 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDM 206 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHH
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.92 E-value=5e+02 Score=26.30 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------------CCCCHHHHHHHHHHHHhc
Q 015370 316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT------------SDFDISACNRLLGAFSDV 383 (408)
Q Consensus 316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~ 383 (408)
+-...+-..+...|+..+......+++.. .|++..|+.+++++...+. -..+......|+.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 015370 384 GLTEKANEFHMLLLQKNCAP 403 (408)
Q Consensus 384 g~~~~a~~~~~~m~~~g~~p 403 (408)
++...++.+++++.+.|+.+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCH
No 473
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=34.81 E-value=2.4e+02 Score=22.60 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=3.8
Q ss_pred HHHHHHhCC
Q 015370 179 LFERVKQSN 187 (408)
Q Consensus 179 ~~~~m~~~~ 187 (408)
+.+++...|
T Consensus 90 l~qeL~qkG 98 (174)
T COG2137 90 LKQELKQKG 98 (174)
T ss_pred HHHHHHHcC
Confidence 334444444
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.70 E-value=2.1e+02 Score=21.97 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc-ccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcCh
Q 015370 77 QRWVSEGNQATVSELRHILKELRKS-QRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGI 140 (408)
Q Consensus 77 ~~~~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (408)
+.+.+.|.+++..-. .++..+... +..-.|.++++.+.+.+ ...+..|--.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~-~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCCE
Confidence 345666777666543 355555544 45778888888888876 455665555556667766654
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.50 E-value=20 Score=31.72 Aligned_cols=86 Identities=12% Similarity=-0.053 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 015370 101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEEL 179 (408)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~ 179 (408)
.|.++.|++.|...+... ++....|..-.+++.+.++...|++=++......|| ...|-.--.+..-.|+|++|.+.
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 344555555555554432 333444444445555555555554444433333232 11122222222333455555555
Q ss_pred HHHHHhCCC
Q 015370 180 FERVKQSNL 188 (408)
Q Consensus 180 ~~~m~~~~~ 188 (408)
|....+.++
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 555555544
No 476
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.13 E-value=3.4e+02 Score=24.22 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQ 330 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~ 330 (408)
+...+...|..+.|..+|+.+.+-++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33344567777888877777766655
No 477
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.76 E-value=4e+02 Score=24.82 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhcCCCCC---------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 015370 126 DYATRIDLMTKVFGIHSGERYFEGLPLSA---------KTSETYTALLHLYAGAKWTEKAEELFERVK 184 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 184 (408)
+...|++..+-.|++..|+++++.+.-.. -.+.+|-.+.-+|...+++.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777888888888877665431 124556666667777777777777777654
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.60 E-value=2.5e+02 Score=28.89 Aligned_cols=30 Identities=7% Similarity=-0.118 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 226 DIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
|..+|..|.....+.|+.+-|+..|+..+.
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 445566666666666666666666655543
No 479
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.20 E-value=4.4e+02 Score=25.19 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
....++.+. +.++++.|+.++..|...|..|....-..+..++-..|
T Consensus 246 ~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 246 VVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 344444444 56889999999999998888877665555554444444
No 480
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.04 E-value=4.5e+02 Score=25.21 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=54.3
Q ss_pred cCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHH
Q 015370 82 EGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYT 161 (408)
Q Consensus 82 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 161 (408)
.|+..+......++.. ..|+...|+.++++....+ ....++..+. +++ .-.+...+.
T Consensus 196 Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~---~~~it~~~V~-------------~~l-----g~~~~~~~~ 252 (484)
T PRK14956 196 ENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT---DSKLTGVKIR-------------KMI-----GYHGIEFLT 252 (484)
T ss_pred cCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC---CCCcCHHHHH-------------HHh-----CCCCHHHHH
Confidence 4666677766555543 4577888888887765432 1112222222 111 013566777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 015370 162 ALLHLYAGAKWTEKAEELFERVKQSNLSFN 191 (408)
Q Consensus 162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 191 (408)
.++.+....+....|+.+++++.+.|..|.
T Consensus 253 ~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 253 SFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 778877777777889999999999997554
No 481
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=32.75 E-value=1e+02 Score=21.50 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcChHHHHHHHh
Q 015370 126 DYATRIDLMTKVFGIHSGERYFE 148 (408)
Q Consensus 126 ~~~~li~~~~~~g~~~~a~~~~~ 148 (408)
.--..+..+++.++++.+..++.
T Consensus 67 ~i~~~L~~L~~~~RF~l~~~fl~ 89 (94)
T PF13877_consen 67 FIFEILEALSKVKRFDLAVMFLS 89 (94)
T ss_pred HHHHHHHHhcCCCCHHHHHHhcC
Confidence 33444556666666666665544
No 482
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.41 E-value=66 Score=22.11 Aligned_cols=41 Identities=12% Similarity=-0.120 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370 104 YKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF 147 (408)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 147 (408)
.+.+.+++..-.+.. ....|...|+.++.+.|.-+-|..+|
T Consensus 46 ~eq~~~mL~~W~~r~---g~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDRE---GSQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhc---CccccHHHHHHHHHHcCcHHHHHhhC
Confidence 344555555444432 12345666666666666665555543
No 483
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.05 E-value=4e+02 Score=24.32 Aligned_cols=53 Identities=6% Similarity=0.043 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHHHHhccC-------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370 311 GLGNKDKIDQIWKSLRMTKQ-------------KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 364 (408)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (408)
..|+...|...++.....|. .++......++++.. .++.+++..+++++.+.|
T Consensus 210 s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai~-~~~~~~~~~~~~~l~~~g 275 (363)
T PRK14961 210 AHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDALL-KKDSKKTMLLLNKISSIG 275 (363)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 35788888888876543321 111122223334433 477888888888887655
No 484
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.83 E-value=86 Score=23.00 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=17.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370 199 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 241 (408)
Q Consensus 199 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 241 (408)
+......+..-.|.++++.+.+.|...+..|.---|+.+...|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3333333334444444444444444444443333334444333
No 485
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.71 E-value=1.8e+02 Score=20.14 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370 213 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 213 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 255 (408)
++|+-....|+..|...|..+++.+.-.--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777888888888888888777666677777777777765
No 486
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=3.3e+02 Score=23.26 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=55.3
Q ss_pred HHhcccHHHHHHHHHHHHhccCCCCChHH-HHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHH
Q 015370 98 LRKSQRYKHALEISEWMVTHKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEK 175 (408)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 175 (408)
|....++..|+..|.+... +.|+..+ |..-+-.+.+..+++.+..--....+..|| +....-+-.+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4455566677776665555 3455433 334444455555555554433332222233 3334444455566666677
Q ss_pred HHHHHHHHHh----CCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370 176 AEELFERVKQ----SNLSFNALMYNEMMTLYMSVGQVEKVALVV 215 (408)
Q Consensus 176 A~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 215 (408)
|+..+.+..+ ..+++-...+..|..+--+.-...+..++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 7666666532 223333344555544433333333333333
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.58 E-value=6e+02 Score=26.27 Aligned_cols=167 Identities=12% Similarity=0.118 Sum_probs=79.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhccCCCCCh--HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCC
Q 015370 94 ILKELRKSQRYKHALEISEWMVTHKEFVLSD--SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAK 171 (408)
Q Consensus 94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 171 (408)
+=+.|...|+++.|+++-.. .|+. ..+..-...|.+.+++..|-+++.++.. .|..+.--+....
T Consensus 364 vWk~yLd~g~y~kAL~~ar~-------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART-------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHHhcchHHHHHHhccC-------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh------hHHHHHHHHHhcC
Confidence 33455666777776654322 2332 2333444566777788888888877733 3444443444444
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHH-----HHHHHH-hcCCH----HHHHHHHHH--------HHh-CCCCCCHHHHHH
Q 015370 172 WTEKAEELFERVKQSNLSFNALMYNE-----MMTLYM-SVGQV----EKVALVVEE--------IKR-KNVVPDIFTYNL 232 (408)
Q Consensus 172 ~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~-~~g~~----~~a~~~~~~--------m~~-~g~~p~~~~~~~ 232 (408)
+.+ +++.|-.=+-..++|...+-.. ++..|. +.++. +++..-++. +.. ....-+...+.+
T Consensus 431 ~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 444 4443322221223333222222 122221 11221 222222211 111 001112233334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 284 (408)
Q Consensus 233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 284 (408)
....+...|+.+....+-.-|.+ |..++..+.+.+.+++|++
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d----------~~~vv~~~~q~e~yeeaLe 551 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD----------YEFVVSYWIQQENYEEALE 551 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 44445556777776665544443 5577788888888888887
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.08 E-value=2.9e+02 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRM 327 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~ 327 (408)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456677777777777776654
No 489
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.53 E-value=1.5e+02 Score=30.27 Aligned_cols=128 Identities=19% Similarity=0.186 Sum_probs=60.5
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370 239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 318 (408)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 318 (408)
..|+++.|.+.-.++ .+..+|..|.....+.|+..-|+. .++.. ..|+-|--.|.-.|+.++.
T Consensus 655 e~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm-~yQ~~---------knfekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEM-CYQRT---------KNFEKLSFLYLITGNLEKL 717 (1202)
T ss_pred hcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHH-HHHHh---------hhhhheeEEEEEeCCHHHH
Confidence 345555555443332 234455566666666666555554 33322 1222233334445555555
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370 319 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 398 (408)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 398 (408)
.++.+..+.+ -|.. .....-.-.|+.++=..++.. ++.. ...|- .-...|.-++|.++.++...
T Consensus 718 ~Km~~iae~r---~D~~---~~~qnalYl~dv~ervkIl~n----~g~~--~layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDAT---GQFQNALYLGDVKERVKILEN----GGQL--PLAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHhh---hhhH---HHHHHHHHhccHHHHHHHHHh----cCcc--cHHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 5544433222 1211 112222234677766666654 2221 11231 12346777888888888766
Q ss_pred c
Q 015370 399 K 399 (408)
Q Consensus 399 ~ 399 (408)
.
T Consensus 782 ~ 782 (1202)
T KOG0292|consen 782 Q 782 (1202)
T ss_pred c
Confidence 4
No 490
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.42 E-value=3.9e+02 Score=23.75 Aligned_cols=71 Identities=7% Similarity=0.081 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh----------cCCHH
Q 015370 247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----------LGNKD 316 (408)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~ 316 (408)
.++++.+.. .++.|...++.-+.-.+.+.=.+.+.+. +++.+...... |..|+..|+. .|++.
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~-lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIR-LWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHH-HHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchH
Confidence 468888887 4899999998888888888889999999 88877665433 5555555543 58999
Q ss_pred HHHHHHHH
Q 015370 317 KIDQIWKS 324 (408)
Q Consensus 317 ~a~~~~~~ 324 (408)
.-+++++.
T Consensus 336 ~nmkLLQ~ 343 (370)
T KOG4567|consen 336 VNMKLLQN 343 (370)
T ss_pred HHHHHHhc
Confidence 88888863
No 491
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=30.30 E-value=5e+02 Score=24.91 Aligned_cols=307 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-----------
Q 015370 87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----------- 155 (408)
Q Consensus 87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------- 155 (408)
|+..|...+.-+.+.+.+.+.-.+|.+|....+..|+.+.|.+.=..=.... ++.|..+|..-....|
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHHhhcCCCChHHHHHHHH
Q ss_pred --------------------------------------------------------------------------------
Q 015370 156 -------------------------------------------------------------------------------- 155 (408)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (408)
T Consensus 183 mEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~n 262 (568)
T KOG2396|consen 183 MELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDN 262 (568)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q ss_pred ------------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370 156 ------------------TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 217 (408)
Q Consensus 156 ------------------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 217 (408)
+...+...-...--....+....+|++..+. -|+...|+..|..|...-....-..+...
T Consensus 263 p~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~ 340 (568)
T KOG2396|consen 263 PLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHT 340 (568)
T ss_pred CccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HH-----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-HcCchhhhHHHHHHHHH
Q 015370 218 IK-----RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI-TASHLVNAESSTLVEAE 291 (408)
Q Consensus 218 m~-----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 291 (408)
|. ..+......-+......+........+.+.-..+... ++..+...|..-+.... ...+++--...++....
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e-~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r 419 (568)
T KOG2396|consen 341 MCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE-LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLR 419 (568)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH-HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q ss_pred HhcccCccchHHHHH-HHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 015370 292 KSITQRQWITYDFLI-ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-ILSSYLMLGHLKEVGEIIDQWKQSATSDFD 369 (408)
Q Consensus 292 ~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 369 (408)
.....+....|+... ..+......+.....+..+. .|+..|+.. +++-+-+.|-..+|...+..+.. .++|+
T Consensus 420 ~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~s 493 (568)
T KOG2396|consen 420 KQVCSELLISWASASEGDSLQEDTLDLIISALLSVI----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFS 493 (568)
T ss_pred HHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCcc
Q ss_pred HHHHHHHHHHHHh---cCChHHHHHHHHHHHhc-CCCCC
Q 015370 370 ISACNRLLGAFSD---VGLTEKANEFHMLLLQK-NCAPT 404 (408)
Q Consensus 370 ~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~-g~~p~ 404 (408)
...|..+|..-.. +| ..-+..+|+.|... |-.|+
T Consensus 494 l~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 494 LDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred HHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
No 492
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.27 E-value=1.3e+02 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Q 015370 90 ELRHILKELRKSQRYKHALEISEWMV 115 (408)
Q Consensus 90 ~~~~li~~~~~~~~~~~a~~~~~~~~ 115 (408)
++..|+.++...|.-..|..+-+.+.
T Consensus 66 t~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 66 SVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHH
Confidence 34444444444444444444433333
No 493
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.12 E-value=1.7e+02 Score=19.58 Aligned_cols=9 Identities=0% Similarity=-0.441 Sum_probs=3.2
Q ss_pred hcChHHHHH
Q 015370 137 VFGIHSGER 145 (408)
Q Consensus 137 ~g~~~~a~~ 145 (408)
.|+++....
T Consensus 7 ~~~~~~~~~ 15 (89)
T PF12796_consen 7 NGNLEILKF 15 (89)
T ss_dssp TTTHHHHHH
T ss_pred cCCHHHHHH
Confidence 333333333
No 494
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=30.07 E-value=6.7e+02 Score=26.35 Aligned_cols=71 Identities=13% Similarity=-0.035 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH-hcccCccchHHHHHHHHHhcCCH
Q 015370 243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK-SITQRQWITYDFLIILYAGLGNK 315 (408)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~ 315 (408)
.+...+.|.++.+ .-...|..++..-...+...|++-.|.+ ++.++.+ .+..++...|-.++..+...|.-
T Consensus 1212 ld~~~e~y~el~k-w~d~~dsK~~~~a~~ha~~~~~yGr~lK-~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLK-WLDASDSKVWQIAKKHAKALGQYGRALK-ALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHH-HhhcCCchheehhHHHHHHHHHHHHHHH-HHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 4445555555555 2333455555566666667778888888 5554444 45555666666666666666654
No 495
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.03 E-value=4.4e+02 Score=24.26 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=11.7
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 015370 237 CAATLNIDQVKKFLDEMSC 255 (408)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~ 255 (408)
+.+.+++..|.++|+.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLR 159 (379)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3455666666666666665
No 496
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.78 E-value=5.5e+02 Score=25.23 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370 299 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 378 (408)
Q Consensus 299 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 378 (408)
...|..-+..+...++.. ....+.+...-.-.+.....-++..|.+.|-.+.|..+.+.+-.+- . ...-|..-+.
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~-~--~~~~~g~AL~ 446 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL-L--KEGRYGEALS 446 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH-H--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-H--HCCCHHHHHH
Confidence 334544444443333221 4444444443333345555667788888888888888887665432 1 2234556666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 015370 379 AFSDVGLTEKANEFHMLLLQK 399 (408)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~ 399 (408)
-+.++|+...+..+.+.+.+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHH------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 677888887777766666543
No 497
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.71 E-value=3.6e+02 Score=23.06 Aligned_cols=115 Identities=11% Similarity=-0.044 Sum_probs=66.9
Q ss_pred hcChHHHHHHHhcCCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHH
Q 015370 137 VFGIHSGERYFEGLPLSAKTS-ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALV 214 (408)
Q Consensus 137 ~g~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~ 214 (408)
..+++.|...|.+.....|++ .-|+.=+-++.+..+++.+..=-.+.++. .||.. ..-.+..+......+++|...
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555555555544445665 44566667777778888777666666554 34544 344455555667778888887
Q ss_pred HHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370 215 VEEIK----RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253 (408)
Q Consensus 215 ~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 253 (408)
+++.. ...+.|.......|..+--+.-...+..++.++.
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77663 3334555566666666544444444555554443
No 498
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.69 E-value=5.8e+02 Score=25.46 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC------------HHHHHHH
Q 015370 309 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD------------ISACNRL 376 (408)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~l 376 (408)
+......+-...+-+.+.+.|+..+......++. ...|+...|+.++++....+.-..+ ......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370 377 LGAFSDVGLTEKANEFHMLLLQKNCAP 403 (408)
Q Consensus 377 i~~~~~~g~~~~a~~~~~~m~~~g~~p 403 (408)
+.++.. |+...++.+++++.+.|..|
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCH
No 499
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.58 E-value=1.5e+02 Score=18.82 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=5.7
Q ss_pred cCCHHHHHHHHHHH
Q 015370 205 VGQVEKVALVVEEI 218 (408)
Q Consensus 205 ~g~~~~a~~~~~~m 218 (408)
.|++=+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444444444444
No 500
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.12 E-value=4.5e+02 Score=24.02 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 015370 305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKEVGEIIDQWKQ 362 (408)
Q Consensus 305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 362 (408)
.|..+.+.|-+..|.++.+-+......-|+......|+.|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 46677899999999999998888765446666666788775 77888888888887654
Done!