BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015371
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + A+S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 126
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 181
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 226
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 260
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + + S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 161
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S + L + D+D + VKFS +G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASG--QCLKTLI-----------DDDNPPVSFVKFSPNGK 208
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 269 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 380 RWEI 383
W++
Sbjct: 136 IWDV 139
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 83
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 84 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 129
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 184
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 185 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 229
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 230 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 263
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 23 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 77
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 103
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 104 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 158 VSAVHFNRDGSLIVSSSYD 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 164
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 272 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 380 RWEI 383
W++
Sbjct: 139 IWDV 142
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 83
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 84 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 129
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 184
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 185 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 229
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 230 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 263
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 23 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 77
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 103
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 104 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 158 VSAVHFNRDGSLIVSSSYD 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 164
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 272 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 380 RWEI 383
W++
Sbjct: 139 IWDV 142
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 78
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 79 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 124
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 179
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 180 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 224
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 225 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 258
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 18 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 72
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 98
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 99 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 153 VSAVHFNRDGSLIVSSSYD 171
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 159
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 267 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 380 RWEI 383
W++
Sbjct: 134 IWDV 137
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 94
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 95 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 140
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 195
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 196 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 240
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 241 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 274
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 275 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 34 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 88
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 114
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 115 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 169 VSAVHFNRDGSLIVSSSYD 187
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 26/227 (11%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 175
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ L GH + + S D+T KLW
Sbjct: 283 ----LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 380 RWEI 383
W++
Sbjct: 150 IWDV 153
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 101
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 102 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 147
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 202
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 203 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 247
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 248 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 281
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 41 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 95
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 121
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 122 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 176 VSAVHFNRDGSLIVSSSYD 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 182
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 290 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 40/159 (25%)
Query: 225 VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 284
L GH + ++ + +G + S+ D+ K+W YD +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA---------------YDGKFE---- 82
Query: 285 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344
T GH + + + +S+ + + S D ++ I+D+ SG
Sbjct: 83 ---------------KTISGHKLGISDV------AWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 345 AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
+ L H+ V C ++P +++S S+D ++ W++
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 73
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 74 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 119
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 174
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 175 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 219
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 220 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 253
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 13 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 67
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 93
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 94 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 148 VSAVHFNRDGSLIVSSSYD 166
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 26/227 (11%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 154
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ L GH + + S D+T KLW
Sbjct: 262 ----LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 380 RWEI 383
W++
Sbjct: 129 IWDV 132
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 77
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 78 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 123
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 178
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 179 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 223
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 224 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 257
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 17 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 71
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 97
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 98 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 152 VSAVHFNRDGSLIVSSSYD 170
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 158
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 266 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 380 RWEI 383
W++
Sbjct: 133 IWDV 136
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 82
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 83 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 128
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 183
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 184 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 228
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 229 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 262
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 22 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 76
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 102
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 103 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 157 VSAVHFNRDGSLIVSSSYD 175
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 163
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 271 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 380 RWEI 383
W++
Sbjct: 138 IWDV 141
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 77
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 78 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 123
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 178
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 179 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 223
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 224 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 257
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 17 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 71
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 97
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 98 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 152 VSAVHFNRDGSLIVSSSYD 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 26/227 (11%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 158
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ L GH + + S D+T KLW
Sbjct: 266 ----LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 380 RWEI 383
W++
Sbjct: 133 IWDV 136
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 76
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 77 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 122
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 177
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 178 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 222
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 223 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 256
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 16 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 70
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 96
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 97 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 151 VSAVHFNRDGSLIVSSSYD 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 157
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 265 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 380 RWEI 383
W++
Sbjct: 132 IWDV 135
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 83
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 84 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 129
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 184
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 185 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 229
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 230 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 263
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 23 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 77
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 103
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 104 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 158 VSAVHFNRDGSLIVSSSYD 176
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 164
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 272 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 380 RWEI 383
W++
Sbjct: 139 IWDV 142
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 99
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 100 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 145
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 200
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 201 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 245
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 246 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 279
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 39 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 93
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 119
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 120 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 173
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 174 VSAVHFNRDGSLIVSSSYD 192
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 180
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S G D+D + VKFS +G+
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTAS-------------GQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 213 RRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLW 257
+ + K L GH + + S D+T KLW
Sbjct: 288 LQTKEIVQK------LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 380 RWEI 383
W++
Sbjct: 155 IWDV 158
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 126
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 181
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 226
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 260
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 161
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S + L + D+D + VKFS +G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASG--QCLKTLI-----------DDDNPPVSFVKFSPNGK 208
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 213 RR 214
+
Sbjct: 269 LQ 270
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102
V F+ DGS V++S + ++++ ++ I+ ++ SP+ ++++
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILA 212
Query: 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162
A++ + + D S + L T HK +++ IF+ T G+ +V+ D
Sbjct: 213 ATLDNTLKLWDY--SKGKCLKTYTGHK---------NEKYCIFANFSVTGGKWIVSGSED 261
Query: 163 NFIYVYDLQANKCSLRIPAHKSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRC 215
N +Y+++LQ + ++ H V +T C E + +D K++ C
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKSDC 315
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 380 RWEI 383
W++
Sbjct: 136 IWDV 139
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 126
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 181
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 226
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 260
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-KALRWTITDTSLS 94
+ G ++ V+ F+ + V+ S + ++++++V K K ++T A ++ +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFN 161
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
D +V +S + I D S + L + D+D + VKFS +G+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASG--QCLKTLI-----------DDDNPPVSFVKFSPNGK 208
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADETGHLIFSGSDDSLCKVWD 212
++AA DN + ++D KC HK++ + F+ G I SGS+D+L +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 213 RR 214
+
Sbjct: 269 LQ 270
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 380 RWEI 383
W++
Sbjct: 136 IWDV 139
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 139/341 (40%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 126
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ C +PAH V+ V F + G LI S S D LC++WD
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 181
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 182 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 226
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 260
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 138 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADET 195
D+D + VKFS +G+ ++AA DN + ++D KC HK++ + F+
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 196 GHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KD 251
G I SGS+D++ +W+ + + K L GH + + S D
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQK------LQGHTDVVISTACHPTENIIASAALEND 305
Query: 252 QTTKLW 257
+T KLW
Sbjct: 306 KTIKLW 311
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 380 RWEIP-GIGEAPLP 392
W++ G+ LP
Sbjct: 136 IWDVKTGMCLKTLP 149
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 138/341 (40%), Gaps = 68/341 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V + +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 80
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
LV AS + I DV S+ + L + H +F F+ +V
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNY------------VFCCNFNPQSNLIV 126
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
+ D + ++D++ C +PAH V+ V F + G LI S S D LC++WD
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT---- 181
Query: 218 SKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272
A+G + L ++F+ +G+Y ++ D KLWD K
Sbjct: 182 ----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK----------- 226
Query: 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 227 -----------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGSE 260
Query: 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 373
DN VYI++L + V KL H V HP ++ S++
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 45/199 (22%)
Query: 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236
+ H V++V F+ G + S S D L K+W G+ + GH GI+ +
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDV 74
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
D +S D+T K+WD+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSS----------------------------------G 100
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356
+ L T KGHS + C F+P+ I +GS D SV I+D+ +G + L H+ P
Sbjct: 101 KCLKTLKGHS--NYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 357 VRDCCWHPIYPMLISSSWD 375
V ++ +++SSS+D
Sbjct: 155 VSAVHFNRDGSLIVSSSYD 173
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 138 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC--FADET 195
D+D + VKFS +G+ ++AA DN + ++D KC HK++ + F+
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 196 GHLIFSGSDDSLCKVWDRRC--FISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KD 251
G I SGS+D++ +W+ + + K L GH + + S D
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQK------LQGHTDVVISTACHPTENIIASAALEND 305
Query: 252 QTTKLW 257
+T KLW
Sbjct: 306 KTIKLW 311
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+S+ + + S D ++ I+D+ SG + L H+ V C ++P +++S S+D ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 380 RWEIP-GIGEAPLP 392
W++ G+ LP
Sbjct: 136 IWDVKTGMCLKTLP 149
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 167/384 (43%), Gaps = 58/384 (15%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S V+ FS DG +AS + +K++N +N ++ + + + ++ + SPD
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSS--SVRGVAFSPDG 110
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHK----GLDFSADGD------EDEF----- 142
+ + AS V + + + L +T H G+ FS DG +D+
Sbjct: 111 QTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 143 --------------GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 188
++ V FS DGQ + +A D + +++ + + + H S V
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG 226
Query: 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 248
V F+ + G I S SDD K+W+R G+ L GH + + R DG+ S
Sbjct: 227 VAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVNGVAFRPDGQTIASA 280
Query: 249 GKDQTTKLWD-----IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK--HPHDQSLAT 301
D+T KLW+ ++ ++ +++ + + D + + S + +K + + Q L T
Sbjct: 281 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQHLQT 339
Query: 302 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 361
GHS ++ FSP+ T I + S D +V +++ +G + L H++ VR
Sbjct: 340 LTGHS--SSVWGVAFSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 392
Query: 362 WHPIYPMLISSSWDCNIVRWEIPG 385
+ P + S+S D + W G
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNG 416
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 136/311 (43%), Gaps = 42/311 (13%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S V+ FS DG +AS + +K++N + +Q + W + + SPD
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGV---AFSPDG 356
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+ + AS V + + + L +T H + V FS DGQ +
Sbjct: 357 QTIASASDDKTVKLWNRNG---QLLQTLTGH------------SSSVRGVAFSPDGQTIA 401
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA--DETGHLIFSGSDDSLCKVWDRRC 215
+A D + +++ + + + H S V V F+ D+T I S SDD K+W+R
Sbjct: 402 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT---IASASDDKTVKLWNR-- 455
Query: 216 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW--DIRKMSSNTTDNSRLR 273
G+ L GH + + DG+ S D+T KLW + + + + T +S +R
Sbjct: 456 ---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 512
Query: 274 D--YDWDYRWMEYPSYARRLK--HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 329
+ D + + S + +K + + Q L T GHS ++ FSP+ T I +
Sbjct: 513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVWGVAFSPDGQT----IAS 566
Query: 330 GSSDNSVYIYD 340
SSD +V +++
Sbjct: 567 ASSDKTVKLWN 577
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
+ V FS DGQ + +A D + +++ + + + H S V V F+ + G I S S
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASAS 76
Query: 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD----- 258
DD K+W+R G+ L GH + + DG+ S D+T KLW+
Sbjct: 77 DDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131
Query: 259 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK--HPHDQSLATYKGHSVLRTLIRCYF 316
++ ++ +++ + + D + + S + +K + + Q L T GHS ++ F
Sbjct: 132 LQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVWGVAF 188
Query: 317 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 376
SP+ T I + S D +V +++ +G + L H++ VR + P + S+S D
Sbjct: 189 SPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 243
Query: 377 NIVRWEIPG 385
+ W G
Sbjct: 244 TVKLWNRNG 252
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 141/366 (38%), Gaps = 70/366 (19%)
Query: 47 QFSNDGSFFVAASQESNIKVYNVDKNWKI---------QKDIE------TKALRWTITDT 91
+FSNDG + ++ +VY V + KD E + + I
Sbjct: 71 KFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 92 SLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST 151
SPD +FL + ++ I D+ E+ V I +G E I+S+ +
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDI-----ENRKIVMILQG---------HEQDIYSLDYFP 175
Query: 152 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 211
G +LV+ D + ++DL+ +CSL + + + V TV + G I +GS D +VW
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 212 DRRCFISKGR---ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 268
D R N GH + + + RDG+ +S D++ KLW+++ ++N +D
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-ANNKSD 293
Query: 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-ATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+ K P+ + TY GH S + +YI
Sbjct: 294 S----------------------KTPNSGTCEVTYIGHKDF------VLSVATTQNDEYI 325
Query: 328 YTGSSDNSVYIYDLVSGAQVAKLDFHN------APVRDCCWHPIYPMLISSSWDCNIVRW 381
+GS D V +D SG + L H A P Y + + S DC W
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Query: 382 EIPGIG 387
+ I
Sbjct: 386 KYKKIA 391
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 31/155 (20%)
Query: 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY-------------DL 170
+V +HK LD ++ + VKFS DG E +A G + VY D
Sbjct: 54 DVELHKSLDHTS-------VVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDS 105
Query: 171 QANKCSLRI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 225
ANK + P+ + +VCF+ + G + +G++D L ++WD I + +
Sbjct: 106 AANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWD----IENRKIVMI 160
Query: 226 LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
L GH + I +D G +S D+T ++WD+R
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDVNTVCFADET-GHLIF 200
+ SV FS D +++V+ G DN + V++++ +C +L AH V+ V F+ +I
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 201 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
SG D+L KVWD ++ GR L GH +T + DG S+ KD +LWD+
Sbjct: 171 SGGWDNLVKVWD----LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 261 K 261
K
Sbjct: 227 K 227
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--ETKALRWTITDTS 92
+++G ++ V SN+G+F V+AS + +++++N+ +N + Q TK + +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL-QNGQCQYKFLGHTK----DVLSVA 116
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD 152
SPD R +V + + +V +L S D S D
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTL-----------SRGAHTDWVSCVRFSPSLD 165
Query: 153 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 212
+V+ G DN + V+DL + + H + V +V + + G L S D + ++WD
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWD 224
Query: 213 RRCFISKGRA 222
++KG A
Sbjct: 225 ----LTKGEA 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 85/227 (37%), Gaps = 50/227 (22%)
Query: 169 DLQANKCSLRIP-----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN 223
D +++CS +P H + V+ V ++ G+ S S D ++W+ + G+
Sbjct: 48 DRHSSECSYGLPDRRLEGHSAFVSDVALSNN-GNFAVSASWDHSLRLWN----LQNGQCQ 102
Query: 224 GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283
+GH + + + D R +S G+D ++W+++ +T SR DW
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL--SRGAHTDW------ 154
Query: 284 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCY-FSPEYSTAQKYIYTGSSDNSVYIYDLV 342
+ C FSP S I +G DN V ++DL
Sbjct: 155 ----------------------------VSCVRFSP--SLDAPVIVSGGWDNLVKVWDLA 184
Query: 343 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389
+G V L H V P + SS D W++ GEA
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK-GEA 230
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 116/255 (45%), Gaps = 32/255 (12%)
Query: 139 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA-DETGH 197
E G++ +++ D Q++V+ DN I ++D +C + H V +C DE
Sbjct: 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDE--R 184
Query: 198 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 257
+I +GS DS +VWD ++ G L+ H E + + R + ++ KD++ +W
Sbjct: 185 VIITGSSDSTVRVWD----VNTGEMLNTLIHHCEAVLHL--RFNNGMMVTCSKDRSIAVW 238
Query: 258 DIRKMSSNTT------DNSRLRDYDWDYRWMEYPSYARRLKHPHDQS---LATYKGHSVL 308
D+ + T + + D+D +++ S R +K + + + T GH
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 296
Query: 309 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPM 368
R +Y + + +GSSDN++ ++D+ GA + L+ H VR C
Sbjct: 297 ----RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKR 348
Query: 369 LISSSWDCNIVRWEI 383
++S ++D I W++
Sbjct: 349 IVSGAYDGKIKVWDL 363
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL 93
W ++G V + S+ ++S +++I++++++ +I+ WT+ +
Sbjct: 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL---AF 130
Query: 94 SPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG 153
SPD ++L + VNI V S +E +S D +F I S+ +S DG
Sbjct: 131 SPDSQYLATGTHVGKVNIFGVESGKKE------------YSLD-TRGKF-ILSIAYSPDG 176
Query: 154 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 213
+ L + D I ++D+ K + H + ++ F+ ++ L+ + SDD K++D
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYD- 234
Query: 214 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+ G L GH + + D +F+S+ D++ K+WD+
Sbjct: 235 ---VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95
+D +T FS D + + + ++ V+ K + ++T+ I + SP
Sbjct: 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYSLDTRGKF--ILSIAYSP 174
Query: 96 DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQE 155
D ++L +I I+NI D+ + + L + H I S+ FS D Q
Sbjct: 175 DGKYLASGAIDGIINIFDIATG--KLLHTLEGHA------------MPIRSLTFSPDSQL 220
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD--- 212
LV A D +I +YD+Q + + H S V V F + H + S S D KVWD
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGT 279
Query: 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
R C + H + + + +G +S G DQ ++D
Sbjct: 280 RTCVHT-------FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253
E + +GS D L KVW R + L GH G+ +D S+ D
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRD--ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 254 TKLWD------IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 307
+LWD I+ + + D L + D +++ ++ ++ + + + K
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLA-FSPDSQYLATGTHVGKV---NIFGVESGKKEYS 159
Query: 308 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 367
L T + S YS KY+ +G+ D + I+D+ +G + L+ H P+R + P
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 368 MLISSSWDCNIVRWEI 383
+L+++S D I +++
Sbjct: 220 LLVTASDDGYIKIYDV 235
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 145 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD 204
+++ FS D Q L + ++ +++ K + + ++ ++ + G + SG+
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-GKYLASGAI 184
Query: 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
D + ++D I+ G+ L GH I + D + ++ D K++D++
Sbjct: 185 DGIINIFD----IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 27/230 (11%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215
++ D I VYD K L++ H V + +A G ++ SGS D +VWD
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWD--- 189
Query: 216 FISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273
I KG V GH + +D ++ +Y ++ +D T +W + K SS D+
Sbjct: 190 -IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEH 247
Query: 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 333
DY + E Y + H S+ T GH + + +GS D
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNI------------------VVSGSYD 289
Query: 334 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
N++ ++D+ + L H + + IS+S D I W++
Sbjct: 290 NTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 150 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 209
S G +V+ DN + V+D+ KC + H + + + E I S S D+ +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIR 335
Query: 210 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI----RKMSSN 265
+WD + G L GH + + R ++ +S D + + WD RK S +
Sbjct: 336 IWD----LENGELXYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 266 TTDNSRLRDY 275
T+ S + +
Sbjct: 390 HTNLSAITTF 399
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 74/230 (32%)
Query: 179 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD--RRCFISKGRANGVLMGHLEGITFI 236
+ H + V T C E ++I +G+DD +V+D + F+ + L GH G+ +
Sbjct: 117 LRGHXTSVIT-CLQFEDNYVI-TGADDKXIRVYDSINKKFLLQ------LSGHDGGVWAL 168
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
G +S D+T ++WDI+K
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCT------------------------------- 196
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---------- 346
++GH+ + +RC EY KYI TGS DN+++++ L +
Sbjct: 197 ---HVFEGHN---STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 347 -------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
V L H A VR H +++S S+D ++ W++
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDV 297
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 39/226 (17%)
Query: 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD-ETGHLIFS 201
G++++K++ G LV+ +D + V+D++ C+ H S V + + + I +
Sbjct: 164 GVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 202 GSDDSLCKVW---------------DRRCFISKGRAN----GVLMGHLEGITFIDSRRDG 242
GS D+ VW D N GVL GH + + G
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--G 280
Query: 243 RYFISNGKDQTTKLWDIRK-----MSSNTTDNSRLRDYDWDYRWMEYPSYARRLK---HP 294
+S D T +WD+ + + S TD YD + + S ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 295 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340
+ + T +GH+ L L+R + K++ + ++D S+ +D
Sbjct: 341 NGELXYTLQGHTALVGLLRL--------SDKFLVSAAADGSIRGWD 378
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR--DCCWHPIYPMLISSSWDCNIVRWEIP 384
+ +GS+D +V ++D+ G + HN+ VR D + +++ S D + W++P
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 385 GIGEAP 390
P
Sbjct: 236 KESSVP 241
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 309 RTLIRCYFSPEYSTAQ---KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365
RT +R + + + Q Y+ TG+ D + +YD ++ + +L H+ V W
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV----WALK 169
Query: 366 YP---MLISSSWDCNIVRWEI 383
Y +L+S S D + W+I
Sbjct: 170 YAHGGILVSGSTDRTVRVWDI 190
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 33/228 (14%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215
++ D I VYD K L++ H V + +A G ++ SGS D +VWD
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWD--- 189
Query: 216 FISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273
I KG V GH + +D ++ +Y ++ +D T +W + K SS D+
Sbjct: 190 -IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEH 247
Query: 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL-------RTLI-------RCYF--- 316
DY + E Y + H S+ T GH + TLI +C +
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 317 -------SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 357
S Y +K + S D ++ I+DL +G + L H A V
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD-ETGHLIFS 201
G++++K++ G LV+ +D + V+D++ C+ H S V + + + I +
Sbjct: 164 GVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 202 GSDDSLCKVW---------------DRRCFISKGRAN----GVLMGHLEGITFIDSRRDG 242
GS D+ VW D N GVL GH+ + + G
Sbjct: 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G 280
Query: 243 RYFISNGKDQTTKLWDIRKMS-----SNTTDNSRLRDYDWDYRWMEYPSYARRLK---HP 294
+S D T +WD+ +M S TD YD + + S ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 295 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340
+ + + T +GH+ L L+R + K++ + ++D S+ +D
Sbjct: 341 NGELMYTLQGHTALVGLLRL--------SDKFLVSAAADGSIRGWD 378
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 150 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 209
S G +V+ DN + V+D+ KC + H + + + E I S S D+ +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIR 335
Query: 210 VWDRRCFISKGRANGVLMGHLEGITFIDS--RRDGRYFISNGKDQTTKLWDI----RKMS 263
+WD NG LM L+G T + R ++ +S D + + WD RK S
Sbjct: 336 IWDLE--------NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 387
Query: 264 SNTTDNSRLRDY 275
+ T+ S + +
Sbjct: 388 YHHTNLSAITTF 399
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 74/230 (32%)
Query: 179 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD--RRCFISKGRANGVLMGHLEGITFI 236
+ H + V T C E ++I +G+DD + +V+D + F+ + L GH G+ +
Sbjct: 117 LRGHMTSVIT-CLQFEDNYVI-TGADDKMIRVYDSINKKFLLQ------LSGHDGGVWAL 168
Query: 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296
G +S D+T ++WDI+K
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCT------------------------------- 196
Query: 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---------- 346
++GH+ + +RC EY KYI TGS DN+++++ L +
Sbjct: 197 ---HVFEGHN---STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 347 -------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
V L H A VR H +++S S+D ++ W++
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDV 297
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR--DCCWHPIYPMLISSSWDCNIVRWEIP 384
+ +GS+D +V ++D+ G + HN+ VR D + +++ S D + W++P
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 385 GIGEAP 390
P
Sbjct: 236 KESSVP 241
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 309 RTLIRCYFSPEYSTAQ---KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365
RT +R + + + Q Y+ TG+ D + +YD ++ + +L H+ V W
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV----WALK 169
Query: 366 YP---MLISSSWDCNIVRWEI 383
Y +L+S S D + W+I
Sbjct: 170 YAHGGILVSGSTDRTVRVWDI 190
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 56/253 (22%)
Query: 156 LVAAGSDN-FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
LVA G+ + + DL++ CS + H+ ++ V ++ +++ + S DS K+WD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 215 ----CFISKGRANG-----------VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
C I+ + NG G + G+ F DG + ++ G D +LW+
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS---DGLHLLTVGTDNRMRLWN- 273
Query: 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319
S+ +N+ + +Y + + + KG L+ + C S E
Sbjct: 274 ----SSNGENTLV-------------NYGKVCNN-------SKKG---LKFTVSCGCSSE 306
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379
+ ++ GS ++ +Y + SG Q+ L H V C + + L S S DCNI+
Sbjct: 307 FV----FVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 380 RWEIPGIGEAPLP 392
W +P + E P+P
Sbjct: 360 AW-VPSLYE-PVP 370
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 229 HLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL-----RDYDWDYRW- 281
H GI +D +GRY +S G D L+D+ S + + RD+ +R+
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 282 ----MEYP---------SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 328
YP S+ + LK +L T + T+ + SP ST +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSP-VSTKHCLVA 160
Query: 329 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEI 383
G+ V + DL SG+ L H + W P Y +L ++S D + W++
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 9/147 (6%)
Query: 126 TIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 185
T K LD A DE + FS+D + +D + ++D K H
Sbjct: 653 TGEKLLDIKAHEDE----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 186 VNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244
VN F +++ HL+ +GS+D K+WD +++ + GH + D
Sbjct: 709 VNCCHFTNKSNHLLLATGSNDFFLKLWD----LNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 245 FISNGKDQTTKLWDIRKMSSNTTDNSR 271
S D T +LWD+R + + N +
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVK 791
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 136/356 (38%), Gaps = 32/356 (8%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT--ITDTSLS 94
D + +V F+N + + A+ ++ + D N QK+ T + S
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QKECRNTMFGHTNSVNHCRFS 759
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED-EFGIFSVKFSTDG 153
PD L S + + DV S+ NV + S D ED E + +S DG
Sbjct: 760 PDDELLASCSADGTLRLWDVRSANERKSINVK--RFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 154 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVW 211
+++ A N + ++D+ + L H +T+ + D + HL ++W
Sbjct: 818 DKIIVAAK-NKVLLFDIHTS--GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 874
Query: 212 --DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 269
D R ++ R GHL + + DG F++ DQT ++W+ +K+ N+
Sbjct: 875 NIDSRLKVADCR------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS--- 925
Query: 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV----LRTLIRCYFSPEYSTAQK 325
+ + + D + E + + + L K + + C SP +
Sbjct: 926 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL----E 981
Query: 326 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
Y+ G D ++ I +L + + H VR + LISSS D I W
Sbjct: 982 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 27/221 (12%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S + FS V A + ++++N+D K+ D L W + SPD
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV-ADCRGH-LSW-VHGVMFSPDG 901
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+ AS + + + + S + + + +D E+E + +V + G +L+
Sbjct: 902 SSFLTASDDQTIRVWETKKVCKNS--AIVLKQEIDVVFQ--ENETMVLAVD-NIRGLQLI 956
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
A + Y+ + Q + C L + V F DE G + + ++ + R F
Sbjct: 957 AGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPNNRVF- 1003
Query: 218 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
++GV GH + + I DG+ IS+ +D ++W+
Sbjct: 1004 ----SSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 296 DQSLATYKGHSVLRTL-IRCY----FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350
D++L +K + + L I+ + +S+ YI T S+D V I+D +G V
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 351 DFHNAPVRDCC 361
D H+ V +CC
Sbjct: 703 DEHSEQV-NCC 712
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 9/147 (6%)
Query: 126 TIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 185
T K LD A DE + FS+D + +D + ++D K H
Sbjct: 646 TGEKLLDIKAHEDE----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 186 VNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244
VN F +++ HL+ +GS+D K+WD +++ + GH + D
Sbjct: 702 VNCCHFTNKSNHLLLATGSNDFFLKLWD----LNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 245 FISNGKDQTTKLWDIRKMSSNTTDNSR 271
S D T +LWD+R + + N +
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVK 784
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 136/356 (38%), Gaps = 32/356 (8%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT--ITDTSLS 94
D + +V F+N + + A+ ++ + D N QK+ T + S
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QKECRNTMFGHTNSVNHCRFS 752
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED-EFGIFSVKFSTDG 153
PD L S + + DV S+ NV + S D ED E + +S DG
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSINVK--RFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 154 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVW 211
+++ A N + ++D+ + L H +T+ + D + HL ++W
Sbjct: 811 DKIIVAAK-NKVLLFDIHTS--GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867
Query: 212 --DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 269
D R ++ R GHL + + DG F++ DQT ++W+ +K+ N+
Sbjct: 868 NIDSRLKVADCR------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS--- 918
Query: 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV----LRTLIRCYFSPEYSTAQK 325
+ + + D + E + + + L K + + C SP +
Sbjct: 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL----E 974
Query: 326 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
Y+ G D ++ I +L + + H VR + LISSS D I W
Sbjct: 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 27/221 (12%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +S + FS V A + ++++N+D K+ D L W + SPD
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV-ADCRGH-LSW-VHGVMFSPDG 894
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+ AS + + + + S + + + +D E+E + +V + G +L+
Sbjct: 895 SSFLTASDDQTIRVWETKKVCKNS--AIVLKQEIDVVFQ--ENETMVLAVD-NIRGLQLI 949
Query: 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217
A + Y+ + Q + C L + V F DE G + + ++ + R F
Sbjct: 950 AGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPNNRVF- 996
Query: 218 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
++GV GH + + I DG+ IS+ +D ++W+
Sbjct: 997 ----SSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 296 DQSLATYKGHSVLRTL-IRCY----FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350
D++L +K + + L I+ + +S+ YI T S+D V I+D +G V
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 351 DFHNAPVRDCC 361
D H+ V +CC
Sbjct: 696 DEHSEQV-NCC 705
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 29/238 (12%)
Query: 147 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS 206
+ F G+ L + +D I ++D Q +C + H +V++V H++ S S D
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDK 214
Query: 207 LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266
K+W+ + G GH E + + +DG S DQT ++W + +
Sbjct: 215 TIKMWE----VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV----ATK 266
Query: 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-- 324
+ LR+ H H ++ S ++ S + +
Sbjct: 267 ECKAELRE------------------HRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 325 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382
++ +GS D ++ ++D+ +G + L H+ VR +H ++S + D + W+
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 20/232 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G + V + +G V+AS++ IK++ V + ++ T W + P+Q
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWV---RMVRPNQ 244
Query: 98 RFLVYASICAIVNIVDVGSSA-RESLANVTIHKGL--------DFSADGDEDEFGIFSVK 148
+ AS C+ V V A +E A + H+ + + S + G + K
Sbjct: 245 DGTLIAS-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 149 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 208
G L++ D I ++D+ C + + H + V V F G I S +DD
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFILSCADDKTL 362
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
+VWD + R L H +T +D + Y ++ DQT K+W+ R
Sbjct: 363 RVWDYK----NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 147 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET----------- 195
V+ + DG + + +D + V+ + +C + H+ V + +A E+
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 196 --------GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 247
G + SGS D K+WD +S G L+GH + + G++ +S
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWD----VSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 355
Query: 248 NGKDQTTKLWDIRKMSSNTTDNS 270
D+T ++WD + T N+
Sbjct: 356 CADDKTLRVWDYKNKRCMKTLNA 378
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 179 IPAHKSDVNTVCFADETGHLIFS----GSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234
+ H+S V V F H +FS S+D+ KVWD G L GH + +
Sbjct: 104 LSGHRSPVTRVIF-----HPVFSVMVSASEDATIKVWD----YETGDFERTLKGHTDSVQ 154
Query: 235 FIDSRRDGRYFISNGKDQTTKLWDIR 260
I G+ S D T KLWD +
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQ 180
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 350 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382
L H +PV +HP++ +++S+S D I W+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 25/254 (9%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN------TVCFADETGH 197
+ + ++ G + G DN VY L +K + + A K V + C +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDK-NENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 198 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQTTK 255
I + S D C +WD + G+ GH + +D G F+S G D+
Sbjct: 168 QILTASGDGTCALWD----VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 256 LWDIRK------MSSNTTDNSRLRDYDWDYRWMEYPSYA--RRLKHPHDQSLATYKGHSV 307
+WD+R ++ +D + +R Y + A R D+ +A Y S+
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 308 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 367
I S ++S + + ++ G +D ++ ++D++ G++V+ L H V P
Sbjct: 284 ----IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT 339
Query: 368 MLISSSWDCNIVRW 381
S SWD + W
Sbjct: 340 AFCSGSWDHTLRVW 353
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 142 FGIFSVKFSTDGQELVAAGSDNFIYVYD-LQANKCSLRIPAHKSDVNTVCFADETGHLIF 200
FG SV FS G+ L A +D I V+D L+ ++ S+ + H++ V+T+ + + G
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGHENRVSTLRVSPD-GTAFC 342
Query: 201 SGSDDSLCKVW 211
SGS D +VW
Sbjct: 343 SGSWDHTLRVW 353
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
++ +IC+I N+ RE NV + + L G S D
Sbjct: 110 NYVACGGLDNICSIYNL-----KTRE--GNVRVSREL-------AGHTGYLSCCRFLDDN 155
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
++V + D ++D++ + + H DV ++ A +T L SG+ D+ K+WD R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVR 214
Query: 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
+G GH I I +G F + D T +L+D+R
Sbjct: 215 ----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 199
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 311
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 357
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147
+ SL+PD R V + A + DV RE + T G E + I ++
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTF--------TGHESD--INAI 232
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGSD 204
F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G D
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGYD 290
Query: 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
D C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 291 DFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 120
Query: 98 RFLVYA---SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
++ +IC+I N+ RE NV + + L G S D
Sbjct: 121 NYVACGGLDNICSIYNL-----KTRE--GNVRVSREL-------AGHTGYLSCCRFLDDN 166
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
++V + D ++D++ + + H DV ++ A +T L SG+ D+ K+WD R
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVR 225
Query: 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
+G GH I I +G F + D T +L+D+R
Sbjct: 226 ----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 199
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 168
Query: 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 169 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 311
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 357
S +S + + + G D + ++D + + L H+ V
Sbjct: 285 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147
+ SL+PD R V + A + DV RE + T G E + I ++
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTF--------TGHESD--INAI 243
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGSD 204
F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G D
Sbjct: 244 CFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGYD 301
Query: 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
D C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 302 DFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
++ +IC+I N+ RE NV + + L G S D
Sbjct: 110 NYVACGGLDNICSIYNL-----KTRE--GNVRVSREL-------AGHTGYLSCCRFLDDN 155
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
++V + D ++D++ + + H DV ++ A +T L SG+ D+ K+WD R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVR 214
Query: 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
+G GH I I +G F + D T +L+D+R
Sbjct: 215 ----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 199
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 311
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 357
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147
+ SL+PD R V + A + DV RE + T G E + I ++
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTF--------TGHESD--INAI 232
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGSD 204
F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G D
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGYD 290
Query: 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
D C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 291 DFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D ++ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
++ +IC+I N+ RE NV + + L G S D
Sbjct: 110 NYVACGGLDNICSIYNL-----KTRE--GNVRVSREL-------AGHTGYLSCCRFLDDN 155
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
++V + D ++D++ + + H DV ++ A +T L SG+ D+ K+WD R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVR 214
Query: 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
+G GH I I +G F + D T +L+D+R
Sbjct: 215 ----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 199
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 311
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 357
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147
+ SL+PD R V + A + DV RE + T G E + I ++
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTF--------TGHESD--INAI 232
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGSD 204
F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G D
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGYD 290
Query: 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
D C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 291 DFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D ++ASQ+ + +++ K+ I ++ W +T + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-IPLRS-SWVMT-CAYAPSG 109
Query: 98 RFLVYA---SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
++ +IC+I N+ RE NV + + L G S D
Sbjct: 110 NYVACGGLDNICSIYNL-----KTRE--GNVRVSREL-------AGHTGYLSCCRFLDDN 155
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
++V + D ++D++ + + H DV ++ A +T L SG+ D+ K+WD R
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVR 214
Query: 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
+G GH I I +G F + D T +L+D+R
Sbjct: 215 ----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 22/226 (9%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLI 199
+ + ++ G + G DN +Y+L+ + ++R+ H ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+ S D+ C +WD I G+ GH + + D R F+S D + KLWD+
Sbjct: 158 VTSSGDTTCALWD----IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYA--------RRLKHPHDQSLATYKGHSVLRTL 311
R+ T D + + ++A R DQ L TY +++ +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 357
S +S + + + G D + ++D + + L H+ V
Sbjct: 274 T----SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147
+ SL+PD R V + A + DV RE + T G E + I ++
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTF--------TGHESD--INAI 232
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGSD 204
F +G D ++DL+A++ L +H + + +V F+ ++G L+ +G D
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFS-KSGRLLLAGYD 290
Query: 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
D C VWD + RA GVL GH ++ + DG + D K+W+
Sbjct: 291 DFNCNVWDA---LKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
++S++F DG +V+ D I V+D++ C + H+S + + D +++ SG+
Sbjct: 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGN 336
Query: 204 DDSLCKVWDRRCFISKGRANGVLMG---HLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260
DS K+WD I G+ L G H +T + ++ + I++ D T KLWD++
Sbjct: 337 ADSTVKIWD----IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 25/222 (11%)
Query: 140 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 199
D+ I ++F G +V+ DN + V+ KC + H V + D ++I
Sbjct: 118 DDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NII 172
Query: 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
SGS D KVW+ G L GH + + + +S +D T ++WDI
Sbjct: 173 ISGSTDRTLKVWN----AETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226
Query: 260 RK---MSSNTTDNSRLRDYDWDYRWMEYPSYARRLK--HPHDQS-LATYKGHSVLRTLIR 313
+ + +R +D R + +Y +K P ++ L T +GH+
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT------N 280
Query: 314 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 355
+S ++ ++ +GS D S+ ++D+ +G + L H +
Sbjct: 281 RVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 152 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 211
DG+ +V+ D + V+D + C + H + V ++ F G + SGS D+ +VW
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVW 304
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D + G L GH + ++ + + +S D T K+WDI+
Sbjct: 305 D----VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKT---------- 348
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q L T +G + ++ + C + ++ T S
Sbjct: 349 ------------------------GQCLQTLQGPNKHQSAVTC-----LQFNKNFVITSS 379
Query: 332 SDNSVYIYDLVSGAQVAKL 350
D +V ++DL +G + L
Sbjct: 380 DDGTVKLWDLKTGEFIRNL 398
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 137 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 238
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 239 RRDGRYFISNGKDQTTKLWDIRK 261
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 43/234 (18%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 211
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 332 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+L A+ I V S + L + +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYLVD---DLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 158 AAGSDNFIYVYDL 170
A +DN I V+ +
Sbjct: 303 AGYTDNVIRVWQV 315
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 207
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 208 CKVWD 212
+W+
Sbjct: 220 IMLWN 224
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 137 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 238
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 239 RRDGRYFISNGKDQTTKLWDIRK 261
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 211
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 332 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+L A+ I V S + L + + +SA E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYLVDDLRPEFAGYSAAA---EPHAVSLAWSADGQTLF 302
Query: 158 AAGSDNFIYVYDL 170
A +DN I V+ +
Sbjct: 303 AGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 207
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 208 CKVWD 212
+W+
Sbjct: 220 IMLWN 224
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 137 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 238
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 239 RRDGRYFISNGKDQTTKLWDIRK 261
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 211
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 332 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+L A+ I V S + L + +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYLVD---DLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 158 AAGSDNFIYVY 168
A +DN I V+
Sbjct: 303 AGYTDNVIRVW 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 207
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 208 CKVWD 212
+W+
Sbjct: 220 IMLWN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 137 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 43 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 102
Query: 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 238
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 103 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 239 RRDGRYFISNGKDQTTKLWDIRK 261
D IS G D+ K W++ +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQ 179
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 211
L++A D + + L + +P S + C G S S D ++W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 87 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 132
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q LAT GH+ + +R + + I +
Sbjct: 133 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 167
Query: 332 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 243
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+L A+ I V S + L + +F+ E S+ +S DGQ L
Sbjct: 244 YWLAAATATGI----KVFSLDPQYLVD---DLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 158 AAGSDNFIYVYDL 170
A +DN I V+ +
Sbjct: 297 AGYTDNVIRVWQV 309
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 207
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 155 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 213
Query: 208 CKVWD 212
+W+
Sbjct: 214 IMLWN 218
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 137 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 238
DV +V D+ +I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 239 RRDGRYFISNGKDQTTKLWDIRK 261
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQ 185
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 43/232 (18%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 211
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------- 138
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 332 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
+D V ++L A HN+ + P ++ S+ D I+ W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K + T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+L A+ I V S + L + +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYLVD---DLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 158 AAGSDNFIYVYDL 170
A +DN I V+ +
Sbjct: 303 AGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 207
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 208 CKVWD 212
+W+
Sbjct: 220 IMLWN 224
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 137 GDEDEFGIFSVKF------------STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184
GD+ +FG+ F + DG ++A D + ++D+ + R HKS
Sbjct: 49 GDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------DS 238
DV +V D+ I SGS D KVW KG+ L+GH + ++ + +
Sbjct: 109 DVXSVDI-DKKASXIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 239 RRDGRYFISNGKDQTTKLWDIRKM 262
D IS G D+ K W++ +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQF 186
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 43/232 (18%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSDDSLCKVW 211
L++A D + + L + +P S + C G S S D ++W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
D ++ G +GH + +D + IS +D+T K+W I+
Sbjct: 93 D----VATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG---------- 138
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331
Q LAT GH+ + +R + + I +
Sbjct: 139 -------------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 332 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
+D V ++L A HN+ + P ++ S+ D I W +
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G NS + T S DG+ +A ++ I ++N+ +K T + + + + SP++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNL----AAKKAXYTLSAQDEVFSLAFSPNR 249
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157
+L A+ I V S + L + +F+ E S+ +S DGQ L
Sbjct: 250 YWLAAATATGI----KVFSLDPQYLVD---DLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 158 AAGSDNFIYVYDL 170
A +DN I V+ +
Sbjct: 303 AGYTDNVIRVWQV 315
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 148 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 207
K D +++AG+D + ++L + H S++NT+ A G LI S D
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGE 219
Query: 208 CKVWD 212
+W+
Sbjct: 220 IXLWN 224
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 42/361 (11%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESN--IKVYNVDKNWKIQKDIETKALRWT--ITDTS 92
D + +V F+N + A+ S+ +K+++++ QK+ T +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-----QKECRNTMFGHTNSVNHCR 756
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD 152
SPD + L S + + D S+ NV L+ ++ E + +S D
Sbjct: 757 FSPDDKLLASCSADGTLKLWDATSANERKSINVK-QFFLNLEDPQEDMEVIVKCCSWSAD 815
Query: 153 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKV 210
G ++ A N I+++D+ + L H +T+ + D HL ++
Sbjct: 816 GARIMVAAK-NKIFLFDIHTS--GLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVEL 872
Query: 211 W--DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 268
W D R ++ R GHL + + DG F+++ DQT +LW+ +K+ N+
Sbjct: 873 WNTDSRSKVADCR------GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNS-- 924
Query: 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV----LRTLIRCYFSPEYSTAQ 324
+ + + D + E + H L + + + C SP
Sbjct: 925 -AVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHL---- 979
Query: 325 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY----PMLISSSWDCNIVR 380
+YI G + ++ I +LV+ H V WH + LISSS D I
Sbjct: 980 QYIAFGDENGAIEILELVNNRIFQSRFQHKKTV----WHIQFTADEKTLISSSDDAEIQV 1035
Query: 381 W 381
W
Sbjct: 1036 W 1036
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 9/134 (6%)
Query: 126 TIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 185
T K L+ A DE + FSTD + + D + +++ + H
Sbjct: 652 TGEKLLEIKAHEDE----VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707
Query: 186 VNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244
VN F + + HL+ +GS D K+WD +++ + GH + D +
Sbjct: 708 VNCCHFTNSSHHLLLATGSSDCFLKLWD----LNQKECRNTMFGHTNSVNHCRFSPDDKL 763
Query: 245 FISNGKDQTTKLWD 258
S D T KLWD
Sbjct: 764 LASCSADGTLKLWD 777
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 37/245 (15%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK-----IQKDIETKALRWTITDTS 92
G S V+ FS DGS F+ +S + I+++ K K ++++++ + +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED------------ 140
+ +R + I +D + A+ S ++ H L + A GDE+
Sbjct: 946 VDHIRRLQL---INGRTGQIDYLTEAQVSCCCLSPH--LQYIAFGDENGAIEILELVNNR 1000
Query: 141 --------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192
+ ++ ++F+ D + L+++ D I V++ Q +KC + + H+ V F
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKD--FR 1057
Query: 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 252
+ S S D KVW+ I G + H + D D F S D+
Sbjct: 1058 LLKNSRLLSWSFDGTVKVWN----IITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADK 1113
Query: 253 TTKLW 257
T K+W
Sbjct: 1114 TAKIW 1118
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 16 SAADSCHVLSRYLPV------NGPWKV-DGMNSRVYTS-----------QFSNDGSFFVA 57
A SC LS +L NG ++ + +N+R++ S QF+ D ++
Sbjct: 967 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS 1026
Query: 58 ASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117
+S ++ I+V+ NW++ K I + + T+ D L + R L + S V + ++ +
Sbjct: 1027 SSDDAEIQVW----NWQLDKCIFLRGHQETVKDFRLLKNSRLLSW-SFDGTVKVWNIITG 1081
Query: 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA--GSDNFIYVYDLQANKC 175
+E + H+G S D D + KFS+ + A D + +++L+ +
Sbjct: 1082 NKEK--DFVCHQGTVLSCDISHD-----ATKFSSTSADKTAKIWSFDLLLPLHELRGHNG 1134
Query: 176 SLRIPAHKSDVNTVCFADETGHL 198
+R A D + D+ G +
Sbjct: 1135 CVRCSAFSVDSTLLATGDDNGEI 1157
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 296 DQSLATYKGHSVLRTL-IRCY----FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350
D++L +K + + L I+ + +ST ++I T S D V I++ ++G V
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 351 DFHNAPVRDCCWHP---IYPMLISSSWDCNIVRWEI 383
D H+ V +CC + +L + S DC + W++
Sbjct: 702 DEHSEQV-NCCHFTNSSHHLLLATGSSDCFLKLWDL 736
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA---DETGHLIF 200
I S K DG L+ G + + ++DL A + RI A + C+A + F
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 201 SGSDDSLCKVWD--RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258
S D VWD + + + GH +G + ID DG + G D T + WD
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQ------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 259 IRK 261
+R+
Sbjct: 212 LRE 214
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 30/256 (11%)
Query: 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVY--TSQFSNDGSFFVAASQES 62
R V G+G D H ++ PV+ ++D +N Y + + DG + + S
Sbjct: 64 RHVYTGGKGCVKVWDISHPGNKS-PVS---QLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 63 NIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121
+ ++++ +I+ ++ + A ++SPD + V S C+ NI A
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAP--ACYALAISPDSK--VCFSCCSDGNI------AVWD 169
Query: 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 181
L N T+ + DG + S DG +L G DN + +DL+ + L+
Sbjct: 170 LHNQTLVRQFQGHTDGAS------CIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHD 222
Query: 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241
S + ++ + TG + G + S +V ++K + + H + +
Sbjct: 223 FTSQIFSLGYC-PTGEWLAVGMESSNVEVL----HVNKPDKYQLHL-HESCVLSLKFAYC 276
Query: 242 GRYFISNGKDQTTKLW 257
G++F+S GKD W
Sbjct: 277 GKWFVSTGKDNLLNAW 292
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 38/223 (17%)
Query: 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL---RWT-----ITDTSLSPDQRFLV 101
++ V+AS++ +I + WK+ KD + + R T + D LS D +F +
Sbjct: 393 DNADIIVSASRDKSIIL------WKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161
S + + D+ A V+ + + + D + SV FS D +++V+A
Sbjct: 447 SGSWDGELRLWDLA-------AGVSTRRFVGHTKD-------VLSVAFSLDNRQIVSASR 492
Query: 162 DNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCF 216
D I +++ +C I H+ V+ V F+ T I S S D KVW+
Sbjct: 493 DRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN---- 547
Query: 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
+S + L GH ++ + DG S GKD LWD+
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 147 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS 206
V S+DGQ ++ D + ++DL A + R H DV +V F+ + ++ S S D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDR 494
Query: 207 LCKVWDR----RCFISKGRANGVLMGHLEGITFIDSRRDGRY--FISNGKDQTTKLWDIR 260
K+W+ + IS+G GH + ++ + + +S D+T K+W++
Sbjct: 495 TIKLWNTLGECKYTISEGGE-----GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL- 548
Query: 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320
N +LR +T GH+ + + SP+
Sbjct: 549 -------SNCKLR--------------------------STLAGHTGYVSTVAV--SPDG 573
Query: 321 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 364
S +G D V ++DL G ++ L+ N+ + C+ P
Sbjct: 574 SLCA----SGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSP 612
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD- 96
G V + FS D V+AS++ IK++N K + R ++ SP+
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 97 -QRFLVYASICAIVNIVDVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154
Q +V AS V + ++ + R +LA H G + +V S DG
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HTGY------------VSTVAVSPDGS 574
Query: 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 212
+ G D + ++DL K + A+ S ++ +CF+ + + K+WD
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPN--RYWLCAATEHGIKIWD 629
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 135 ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 194
A+ DE + + SVK+S DG L + + +YD+++ + H++ V + +
Sbjct: 129 AETDESTY-VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--- 184
Query: 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 254
H++ SGS D R G L GH + + R DG S G D
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241
Query: 255 KLWDIR 260
++WD R
Sbjct: 242 QIWDAR 247
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102
V + ++S+DGSF + +Y+V+ K++ +A LS ++ L
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARV-----GCLSWNRHVLSS 191
Query: 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162
S ++ DV +AN I S++ + + + +DG +L + G+D
Sbjct: 192 GSRSGAIHHHDV------RIANHQIGTLQGHSSE-------VCGLAWRSDGLQLASGGND 238
Query: 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202
N + ++D +++ H + V V + +L+ +G
Sbjct: 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 43/227 (18%)
Query: 157 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWN--- 125
Query: 216 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274
+ + GH + + + +D F S D+T K+W + + + N T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT------- 178
Query: 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334
L T + V + Y P+ + Y+ T S D
Sbjct: 179 ------------------------LTTGQERGV--NYVDYYPLPD----KPYMITASDDL 208
Query: 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111
+ ++ S + +K++N + NW +++ E + + +P +AS C V +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYD 169
+G +S N T+ G E G+ V + D ++ A D I ++D
Sbjct: 168 WSLG----QSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 170 LQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 216
Q C + H S+V+ F T +I SGS+D K+W+ +
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTY 260
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 18/196 (9%)
Query: 157 VAAGSDNF-IYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
V +GSD+ + +++ + N H+ V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-- 169
Query: 215 CFISKGRANGVLM-GHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
+ + N L G G+ ++D D Y I+ D T K+WD + S T
Sbjct: 170 --LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSL-----ATYKGHSVLRT-LIRCYFSPEYSTAQK 325
+ + + + +P+ + D +L +TYK L L R + + T +K
Sbjct: 228 MSNVSFA---VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Query: 326 YIYTGSSDNSVYIYDL 341
DN + L
Sbjct: 285 NYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 43/227 (18%)
Query: 157 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWN--- 125
Query: 216 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274
+ + GH + + + +D F S D+T K+W + + + N T
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT------- 178
Query: 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334
L T + V + Y P+ + Y+ T S D
Sbjct: 179 ------------------------LTTGQERGV--NYVDYYPLPD----KPYMITASDDL 208
Query: 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111
+ ++ S + +K++N + NW +++ E + + +P +AS C V +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYD 169
+G +S N T+ G E G+ V + D ++ A D I ++D
Sbjct: 168 WSLG----QSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 170 LQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 216
Q C + H S+V+ F T +I SGS+D K+W+ +
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTY 260
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 18/196 (9%)
Query: 157 VAAGSDNF-IYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
V +GSD+ + +++ + N H+ V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-- 169
Query: 215 CFISKGRANGVLM-GHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
+ + N L G G+ ++D D Y I+ D T K+WD + S T
Sbjct: 170 --LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSL-----ATYKGHSVLRT-LIRCYFSPEYSTAQK 325
+ + + + +P+ + D +L +TYK L L R + + T +K
Sbjct: 228 MSNVSFA---VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Query: 326 YIYTGSSDNSVYIYDL 341
DN + L
Sbjct: 285 NYIASGFDNGFTVLSL 300
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 43/227 (18%)
Query: 157 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWE- 127
Query: 216 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274
+ GH + + + +D F S D+T K+W + + + N T +
Sbjct: 128 --NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE- 184
Query: 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334
R + Y Y Y P+ + Y+ T S D
Sbjct: 185 -----RGVNYVDY---------------------------YPLPD----KPYMITASDDL 208
Query: 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111
+ ++ S + +K++N + NW +++ E + + +P +AS C V +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYD 169
+G +S N T+ G E G+ V + D ++ A D I ++D
Sbjct: 168 WSLG----QSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 170 LQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 216
Q C + H S+V+ F T +I SGS+D K+W+ +
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTY 260
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 22/217 (10%)
Query: 157 VAAGSDNF-IYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
V +GSD+ + +++ + N H+ V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-- 169
Query: 215 CFISKGRANGVLM-GHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
+ + N L G G+ ++D D Y I+ D T K+WD + S T
Sbjct: 170 --LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSL-----ATYKGHSVLRT-LIRCYFSPEYSTAQK 325
+ + + + +P+ + D +L +TYK L L R + + T +K
Sbjct: 228 MSNVSFA---VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Query: 326 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 362
DN + L + LD PV W
Sbjct: 285 NYIASGFDNGFTVLSLGNDEPTLSLD----PVGKLVW 317
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 43/227 (18%)
Query: 157 VAAGSDNF-IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215
+ GSD+F I V++ + + AH + ++ T + SGSDD K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWE- 127
Query: 216 FISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274
+ GH + + + +D F S D+T K+W + + + N T +
Sbjct: 128 --NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE- 184
Query: 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334
R + Y Y Y P+ + Y+ T S D
Sbjct: 185 -----RGVNYVDY---------------------------YPLPD----KPYMITASDDL 208
Query: 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
++ I+D + + VA L+ H + V +HP P++IS S D + W
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111
+ ++ S + +K++N + NW +++ E + + +P +AS C V +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDP-STFASGCLDRTVKV 167
Query: 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYD 169
+G +S N T+ G E G+ V + D ++ A D I ++D
Sbjct: 168 WSLG----QSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 170 LQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 216
Q C + H S+V+ F T +I SGS+D K+W+ +
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSSTY 260
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 22/217 (10%)
Query: 157 VAAGSDNF-IYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
V +GSD+ + +++ + N H+ V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-- 169
Query: 215 CFISKGRANGVLM-GHLEGITFID--SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271
+ + N L G G+ ++D D Y I+ D T K+WD + S T
Sbjct: 170 --LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 272 LRDYDWDYRWMEYPSYARRLKHPHDQSL-----ATYKGHSVLRT-LIRCYFSPEYSTAQK 325
+ + + + +P+ + D +L +TYK L L R + + T +K
Sbjct: 228 MSNVSFA---VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284
Query: 326 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 362
DN + L + LD PV W
Sbjct: 285 NYIASGFDNGFTVLSLGNDEPTLSLD----PVGKLVW 317
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 35/227 (15%)
Query: 176 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235
++++ H+ + V + E G L+FS S DS VW + G G L GH I
Sbjct: 25 AIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWS 79
Query: 236 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR----- 290
ID +Y ++ D + KLWD+ T S + + +E+
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCGNYFLAIL 134
Query: 291 ---LKHPHDQSLATYKGHSVLRTLIRCYFSP----------------EYSTAQKYIYTGS 331
+K+P ++ + S L + P +ST KYI G
Sbjct: 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194
Query: 332 SDNSVYIYDLVSGAQ-VAKLDFHNAPVRDCCWHPIYPMLISSSWDCN 377
D + YD+ + + V +D H + D + P I+SS D N
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT---ITDTSLSPDQRFLV 101
T QF + ++AS++ I ++ + ++ + I +ALR ++D +S D +F +
Sbjct: 24 TPQFPD---MILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFAL 79
Query: 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161
S + + D+ + T + + + D + SV FS+D +++V+
Sbjct: 80 SGSWDGTLRLWDLTT-------GTTTRRFVGHTKD-------VLSVAFSSDNRQIVSGSR 125
Query: 162 DNFIYVYD-LQANKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFISK 219
D I +++ L K +++ +H V+ V F+ + + +I S D L KVW+ ++
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN----LAN 181
Query: 220 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261
+ +GH + + DG S GKD LWD+ +
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 179 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGHLEGITFID 237
+ H V + + +I S S D +W R + G L GH ++ +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 238 SRRDGRYFISNGKDQTTKLWDI 259
DG++ +S D T +LWD+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDL 92
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT---ITDTSLSPDQRFLV 101
T QF + ++AS++ I ++ + ++ + I +ALR ++D +S D +F +
Sbjct: 47 TPQFPD---MILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102
Query: 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161
S + + D+ + T + + + D + SV FS+D +++V+
Sbjct: 103 SGSWDGTLRLWDLTT-------GTTTRRFVGHTKD-------VLSVAFSSDNRQIVSGSR 148
Query: 162 DNFIYVYD-LQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISK 219
D I +++ L K +++ +H V+ V F+ + + +I S D L KVW+ ++
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN----LAN 204
Query: 220 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261
+ +GH + + DG S GKD LWD+ +
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 157 VAAGSDNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-R 213
V G++N +Y + + +LR + H V + + +I S S D +W
Sbjct: 11 VDLGTEN-LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT 69
Query: 214 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259
R + G L GH ++ + DG++ +S D T +LWD+
Sbjct: 70 RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 137/367 (37%), Gaps = 70/367 (19%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95
+ G + +VY+ ++ + ++ V+ASQ+ + V+N + QK K + + + +P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAP 118
Query: 96 DQRFLVYASICAIVNIVDVGSSA-RESLANV----TIHKGLDFSADGDEDEFGIFSVKFS 150
+ + + + + +I ++ S A R+ V T HKG S D+
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ--------- 169
Query: 151 TDGQELVAAGSDNFIYVYDLQANKCSLRIP--------AHKSDVNTVCFADETGHLIFSG 202
L+ D ++D+ + RI H +DV ++ ++ SG
Sbjct: 170 --ETRLITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 203 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262
S D+ ++WD R RA GH I + DG+ F + D T +L+D+R
Sbjct: 225 SCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT- 280
Query: 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322
+L+ Y+ R +D L S +S
Sbjct: 281 ------GHQLQVYN-------------REPDRNDNELPIVT-------------SVAFSI 308
Query: 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKL----DFHNAPVRDCCWHPIYPMLISSSWDCNI 378
+ + ++ G S+ Y++D + V L + H + L + SWD N+
Sbjct: 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368
Query: 379 VRWEIPG 385
W G
Sbjct: 369 KIWAFSG 375
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 135 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 102 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 161
Query: 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 162 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 220
Query: 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294
KLW +++S N+ YD++ P ++++ P
Sbjct: 221 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 258
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 135 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 61 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 120
Query: 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 121 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 179
Query: 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294
KLW +++S N+ YD++ P ++++ P
Sbjct: 180 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 217
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 135 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 65 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 124
Query: 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 125 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 183
Query: 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294
KLW +++S N+ YD++ P ++++ P
Sbjct: 184 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 135 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 125
Query: 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 184
Query: 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294
KLW +++S N+ YD++ P ++++ P
Sbjct: 185 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 135 ADGDEDEFGI-FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193
AD DE+ + ++ +T L AGS I + + +C H + +N + F
Sbjct: 65 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 124
Query: 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253
+L+ S S D ++W+ + GV GH + + D G +S G D +
Sbjct: 125 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMDHS 183
Query: 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294
KLW +++S N+ YD++ P ++++ P
Sbjct: 184 LKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240
AH S++ + F +G + S S D K+W + G L+GH +T I
Sbjct: 137 AHVSEITKLKFF-PSGEALISSSQDMQLKIWS----VKDGSNPRTLIGHRATVTDIAIID 191
Query: 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300
GR +S D T +LW+ ++ T N + +D + R+L ++
Sbjct: 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-----HEIS 246
Query: 301 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350
T K +++ E+ T KY+ G + ++++ S Q +L
Sbjct: 247 TSKKNNL-----------EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 285
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240
AH S++ + F +G + S S D K+W + G L+GH +T I
Sbjct: 134 AHVSEITKLKFF-PSGEALISSSQDMQLKIWS----VKDGSNPRTLIGHRATVTDIAIID 188
Query: 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300
GR +S D T +LW+ ++ T N + +D + R+L ++
Sbjct: 189 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-----HEIS 243
Query: 301 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350
T K +++ E+ T KY+ G + ++++ S Q +L
Sbjct: 244 TSKKNNL-----------EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 282
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 327 IYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCW-HPIYP-MLISSSWDCNIVRW 381
+ T SSD SV I+D+ +G Q +A L H PV W HP+Y +L S S+D ++ W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 33/223 (14%)
Query: 145 FSVKFSTDGQELVAAGSDNFIYVYDL--QANKCSLRIP-----AHKSDVNTVCFADETGH 197
FS K + D L++ D + ++ L + IP H V+ + + E
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 198 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 257
I S D +L ++WD R + R +GH + + D R +S G ++ KLW
Sbjct: 91 AISSSWDKTL-RLWDLRTGTTYKR----FVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 258 DIR---KMSSNTTDNSRLRDYDWD--YRWMEYPSYARRLK--HPH------DQSLATYKG 304
+I K SS +N DW R+ A +++ P+ D L +
Sbjct: 146 NILGECKFSSAEKENHS----DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201
Query: 305 HSVLRTLIRCYFSP----EYSTAQKYIYTGSSDNSVYIYDLVS 343
+ +R + + S S KYI TG D + I+D+++
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQAN---------------KCSLRIPAHKSDVNT 188
++SV FS D +++++AG++ I ++++ C P KS
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 248
FA + G D L KVW+ I H + + +G+Y +
Sbjct: 181 QPFAP---YFASVGWDGRL-KVWNTNFQIRY-----TFKAHESNVNHLSISPNGKYIATG 231
Query: 249 GKDQTTKLWDIRKMS 263
GKD+ +WDI ++
Sbjct: 232 GKDKKLLIWDILNLT 246
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 303 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA-------KLDFHNA 355
+GHS T I FS + + + +GS D +V I+ L Q L HN
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77
Query: 356 PVRDCCWHPIYPMLISSSWDCNIVRWEI 383
V D ISSSWD + W++
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWDL 105
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 152 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 211
D + V G I+VY + + ++ H ++ + F D T L+ S SDD ++W
Sbjct: 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIW 274
Query: 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261
G + GH + I D + IS D + +LW +++
Sbjct: 275 HG----GNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 176 SLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234
+L + K+ C A G+ I +G ++ ++W++ G VL H I
Sbjct: 99 ALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-----TGALLNVLNFHRAPIV 153
Query: 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294
+ +DG + IS + T LW++ +S + L++ S H
Sbjct: 154 SVKWNKDGTHIISMDVENVTILWNV--ISGTVMQHFELKETG--------GSSINAENHS 203
Query: 295 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 354
D SL E+ K++ G ++++Y + KL H+
Sbjct: 204 GDGSLG---------------VDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKLIGHH 247
Query: 355 APVRDCCWHPIYPMLISSSWDCNIVRW 381
P+ ++ +L+S+S D + W
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 104/297 (35%), Gaps = 75/297 (25%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
+F + +S DG ++ +A +D I ++++ K IP G I
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV--------------GTRI---E 284
Query: 204 DDSLCKVWDRRCFIS-------------KGRANGVLMGHLEGITFIDSRRDGRYFISNGK 250
D L +W ++ +S G + V GH + IT + S DG+ S
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344
Query: 251 DQTTKLWDIRKMSSN---------------TTDNSRLRDYDWDYRWMEYP---------- 285
+ WDI SN TT L WD P
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK 404
Query: 286 SYARRL-KHPHDQSL---------ATYK-----GHSVLRTLIRCYFSP--EYSTAQKYIY 328
+ A +L P ++ A YK H L + Y S S ++++
Sbjct: 405 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA 464
Query: 329 TGSSDNSVYIYDLVSGAQVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383
G D+ V++Y L SGA V+++ H A + + L+++ ++ + +
Sbjct: 465 VGGQDSKVHVYKL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 147 VKFSTDGQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSDVNTVCFADETGHLIFSGSDD 205
V S D Q + G D+ ++VY L S ++ H +++ +V F++ L+ +D
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV--ATDQ 511
Query: 206 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-------RDGRYFISNGKDQTTKLWD 258
S R I AN + H TF ++ D + D + +W+
Sbjct: 512 S-------RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
Query: 259 IRKMS 263
+ K S
Sbjct: 565 MNKPS 569
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 157 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 216
V G + F +V+ + + +N+V F I SGSDD+ +++ F
Sbjct: 121 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180
Query: 217 ISKGRANGVLMGHLEGITFIDSRR---DGRYFISNGKDQTTKLWD 258
K E F+ S R DG F S G D T L++
Sbjct: 181 KFKSTFG-------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 158 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
+ D + ++D ++N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
Query: 215 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 262
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 305 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKS--DVNTVCFADETGHLIF-----SGSDDSLC 208
L++A D+ I ++D+ A ++ K+ +T D + HL+ S +DD
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 267
+WD R + ++ V H + + + ++ G D+T LWD+R +
Sbjct: 253 MIWDTRSNNTSKPSHSV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+D + +W PH++++ G T R ++
Sbjct: 312 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLNVWDLSKIGEEQS 355
Query: 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 383
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 356 PEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRI------PAHKSDVNTVCF--ADETGHLIFSGSD-DS 206
+AGS NF ++DL+A K + + K ++ V + + T +GSD D
Sbjct: 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 207 LCKVWDRRCFISKGRANGVL----MGHLEGITFID-SRRDGRYFISNGKDQTTKLWD 258
+WD R AN L GH +GI +D +D +S+G+D T LW+
Sbjct: 241 SILIWDLR------NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 178 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGHL-----E 231
R H S V TV F + +++ SG ++ +WD +C S + G E
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167
Query: 232 GITFIDSRRDGRYFISNGKDQTTKLWDIR 260
I+ ++ F S G +WD++
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLK 196
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 40/228 (17%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
I SV + +G L S + ++D+Q K + +H + V ++ + +++ SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 126
Query: 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263
D R L GH + + + DGR+ S G D +W
Sbjct: 127 RSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------ 177
Query: 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323
PS Q+ ++G ++ + C +
Sbjct: 178 ---------------------PSAPGEGGWVPLQTFTQHQG--AVKAVAWCPWQSNVLAT 214
Query: 324 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS 371
G+SD + I+++ SGA ++ +D H+ V W P Y LIS
Sbjct: 215 GG----GTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELIS 257
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 158 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
+ D + ++D ++N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 215 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 262
K H + I + S + S+G D+ +WD+ K+
Sbjct: 307 NLKLKLH---TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 62/251 (24%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLC 208
L++A D+ + ++D+ A +I H + V V + L S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 267
+WD R + + + ++ H + + + ++ G D+T LWD+R +
Sbjct: 255 MIWDTRSNTT-SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----- 308
Query: 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+LK L T++ H + + ++SP T +
Sbjct: 309 ----------------------KLK------LHTFESHK--DEIFQVHWSPHNET---IL 335
Query: 328 YTGSSDNSVYIYDL--VSGAQVA--------KLDF----HNAPVRDCCWHPIYPMLISSS 373
+ +D + ++DL + Q A +L F H A + D W+P P +I S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 374 WDCNIVR-WEI 383
+ NI++ W++
Sbjct: 396 SEDNIMQIWQM 406
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 158 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
+ D + ++D + N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 215 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 262
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 309 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIF-----SGSDDSLC 208
L++A D+ I ++D+ A R+ K+ +T D HL+ S +DD
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 267
+WD R + + + + H + + + ++ G D+T LWD+R +
Sbjct: 257 MIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+D + +W PH++++ G T R + ++
Sbjct: 316 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 359
Query: 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 383
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 360 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 158 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
+ D + ++D ++N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 215 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 262
K H + I + S + S+G D+ +WD+ K+
Sbjct: 307 NLKLKLH---TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 61/247 (24%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLC 208
L++A D+ + ++D+ A +I H + V V + L S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 267
+WD R + + + ++ H + + + ++ G D+T LWD+R +
Sbjct: 255 XIWDTRSNTT-SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----- 308
Query: 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+LK L T++ H + + ++SP T +
Sbjct: 309 ----------------------KLK------LHTFESHK--DEIFQVHWSPHNET---IL 335
Query: 328 YTGSSDNSVYIYDL--VSGAQVA--------KLDF----HNAPVRDCCWHPIYPMLISSS 373
+ +D + ++DL + Q A +L F H A + D W+P P +I S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 374 WDCNIVR 380
+ NI +
Sbjct: 396 SEDNIXQ 402
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 158 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
+ D + ++D + N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 215 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 262
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 311 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIF-----SGSDDSLC 208
L++A D+ I ++D+ A R+ K+ +T D HL+ S +DD
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 267
+WD R + + + + H + + + ++ G D+T LWD+R +
Sbjct: 259 MIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+D + +W PH++++ G T R + ++
Sbjct: 318 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 361
Query: 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 383
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 362 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 158 AAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214
+ D + ++D + N K S + AH ++VN + F + ++ +GS D +WD R
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 215 CFISKGRANGVLMGHLEGITFID-SRRDGRYFISNGKDQTTKLWDIRKM 262
K + H + I + S + S+G D+ +WD+ K+
Sbjct: 313 NLKLKLHS---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIF-----SGSDDSLC 208
L++A D+ I ++D+ A R+ K+ +T D HL+ S +DD
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 267
+WD R + + + + H + + + ++ G D+T LWD+R +
Sbjct: 261 MIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327
+D + +W PH++++ G T R + ++
Sbjct: 320 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 363
Query: 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR-WEI 383
+ D + + G H A + D W+P P +I S + NI++ W++
Sbjct: 364 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 326 YIYTGSSDNSVYIYDLVSGAQ----VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381
Y+ T S D SV+I++ + ++ L H+ V+ WHP +L SSS+D + W
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 382 E 382
+
Sbjct: 181 K 181
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202
GI + + +LV+ D+F + L AHK + +V + T L+ +G
Sbjct: 25 GILATGSTDRKIKLVSVKYDDFTLIDVLDET-------AHKKAIRSVAWRPHTS-LLAAG 76
Query: 203 SDDSLCKVWDR-----RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 257
S DS +W + R F A ++ GH + + DG Y + +D++ +W
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLA--IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
Query: 258 DIRKMSSNTTDNSRLRDYDWDYR---WMEYPSYARRLKHPHDQSLATYK 303
+ + S L+++ D + W +PS A +D ++ +K
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIW--HPSEALLASSSYDDTVRIWK 181
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 42/247 (17%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
I SV + +G L S + ++D+Q K + +H + V ++ + +++ SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 206
Query: 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263
D R L GH + + + DGR+ S G D +W
Sbjct: 207 RSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------ 257
Query: 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323
PS Q+ ++G ++ + C +
Sbjct: 258 ---------------------PSAPGEGGWVPLQTFTQHQG--AVKAVAWCPWQSNVLAT 294
Query: 324 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW--DCNIVRW 381
G+SD + I+++ SGA ++ +D H+ V W P Y LIS +V W
Sbjct: 295 GG----GTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIW 349
Query: 382 EIPGIGE 388
+ P + +
Sbjct: 350 KYPTMAK 356
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 45/250 (18%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
+ +V + G + V+ D I V+DL AH + V V + + S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263
+D+ +WD RC + G+L + + F+ ++ T L D + S
Sbjct: 190 EDNRILLWDTRCPKPASQIGCSAPGYLP-TSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248
Query: 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323
+ + HS T + FSP +
Sbjct: 249 ----------------------------------CVLSSAVHSQCVTGL--VFSPH---S 269
Query: 324 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI-YPMLISSSWDCNIVRWE 382
++ + S D S+ + D S +++ + H VRD W P+ + +L + WD +V
Sbjct: 270 VPFLASLSEDCSLAVLD-SSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328
Query: 383 IPGIGEAPLP 392
+P PLP
Sbjct: 329 VP---TEPLP 335
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 42/247 (17%)
Query: 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203
I SV + +G L S + ++D+Q K + +H + V ++ + +++ SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 217
Query: 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263
D R L GH + + + DGR+ S G D +W
Sbjct: 218 RSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW------ 268
Query: 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323
PS Q+ ++G ++ + C + +
Sbjct: 269 ---------------------PSAPGEGGWVPLQTFTQHQG--AVKAVAWC----PWQSN 301
Query: 324 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW--DCNIVRW 381
G+SD + I+++ SGA ++ +D H+ V W P Y LIS +V W
Sbjct: 302 VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIW 360
Query: 382 EIPGIGE 388
+ P + +
Sbjct: 361 KYPTMAK 367
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 314 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK----LDFHNAPVRDCCWHPIYPML 369
C +P++ I S + + L +V K + H APV D W P +
Sbjct: 40 CAVNPKF---MALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV 96
Query: 370 ISS-SWDCNIVRWEIPGIG 387
I+S S DC ++ WEIP G
Sbjct: 97 IASGSEDCTVMVWEIPDGG 115
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 327 IYTGSSDNSVYIYDLVSGA-------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNI 378
I +GS D +V ++++ G V L+ H V WHP +L+S+ D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 379 VRWEIPGIGEAPL 391
+ W++ G G A L
Sbjct: 157 LVWDV-GTGAAVL 168
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 72 NWKIQKDIE-TKALRWTITDTSLSPDQ---RFLVYASICAIVNIVDVGSSARESLANVTI 127
N KDIE T + +I S SP FL+ S V +V S + +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 128 HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 187
H G + V +S DG ++ A D ++DL +N+ +++I H + V
Sbjct: 85 HTG------------PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVK 131
Query: 188 TVCFADETGH-LIFSGSDDSLCKVWDRR 214
T+ + + + +GS D K WD R
Sbjct: 132 TIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 151 TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 210
+DG + V+ G D + V+DL AH S+VN V + S +D +
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 211 WDRR 214
WD R
Sbjct: 209 WDTR 212
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 353 HNAPVRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 387
H APV D W P +I+S S DC ++ WEIP G
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 327 IYTGSSDNSVYIYDLVSGA-------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNI 378
I +GS D +V ++++ G V L+ H V WHP +L+S+ D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 379 VRWEIPGIGEAPL 391
+ W++ G G A L
Sbjct: 157 LVWDV-GTGAAVL 168
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 319 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCN 377
E + + TGS D +++IY + ++ K L+ H V + W L+SS D
Sbjct: 548 EEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGADAC 606
Query: 378 IVRWEI 383
I RW +
Sbjct: 607 IKRWNV 612
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 319 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCN 377
E + + TGS D +++IY + ++ K L+ H V + W L+SS D
Sbjct: 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGADAC 606
Query: 378 IVRWEI 383
I RW +
Sbjct: 607 IKRWNV 612
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 146 SVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202
SV + ++ + L+ G D N + ++ + H+ +V ++ F D ++ SG
Sbjct: 64 SVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISG 120
Query: 203 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262
S D KVW + +A+ + + ++F +++ F++ D+T KLW K+
Sbjct: 121 SWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK-----FLTASADKTIKLWQNDKV 175
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-ANGVLMGHLEGITFIDSRRDGRY 244
+N+VC+ E L+F G D + V F + G L+GH + + S +DG
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGV---PLFATSGEDPLYTLIGHQGNVCSL-SFQDG-V 116
Query: 245 FISNGKDQTTKLWDIRKMSSN-TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 303
IS D+T K+W + N N+ + WD + + + S + L D+++ ++
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQAHNASV----WDAKVVSF-SENKFLTASADKTIKLWQ 171
Query: 304 GHSVLRTL 311
V++T
Sbjct: 172 NDKVIKTF 179
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-------VAKLD 351
+ Y G LR ++ + P+ S YT S + +I DL + AQ V D
Sbjct: 100 IVAYAGQIGLRIILDRH-RPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFD 158
Query: 352 FHNAPVRDCCW 362
HN P CW
Sbjct: 159 LHNEPHDPACW 169
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-------VAKLD 351
+ Y G LR ++ + P+ S YT S + +I DL + AQ V D
Sbjct: 100 IVAYAGQIGLRIILDRH-RPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFD 158
Query: 352 FHNAPVRDCCW 362
HN P CW
Sbjct: 159 LHNEPHDPACW 169
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 26/164 (15%)
Query: 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 168
+ I +V + + +T H+G + D +FG S DG+ L+ +
Sbjct: 33 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI 92
Query: 169 DLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227
+ A H + VN+V +A E G L+ S D V + F G + +++
Sbjct: 93 AVHA--------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE---FKENGTTSPIII 141
Query: 228 -GHLEGITFI-------------DSRRDGRYFISNGKDQTTKLW 257
H G+ + ++ R F++ G D K+W
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCWHPIYPMLISSSWD 375
++ + + T S D SV+++++ + V+ L+ H V+ WHP +L S+S+D
Sbjct: 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 26/164 (15%)
Query: 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 168
+ I +V + + +T H+G + D +FG S DG+ L+ +
Sbjct: 35 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI 94
Query: 169 DLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227
+ A H + VN+V +A E G L+ S D V + F G + +++
Sbjct: 95 AVHA--------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE---FKENGTTSPIII 143
Query: 228 -GHLEGITFI-------------DSRRDGRYFISNGKDQTTKLW 257
H G+ + ++ R F++ G D K+W
Sbjct: 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161
+ I IVN V AR+S+ N T + G + D D F ++ ++ DG+ +
Sbjct: 184 FKDIQVIVN-VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE 242
Query: 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193
D+ +++ +++ ++R + VC A+
Sbjct: 243 DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 26/164 (15%)
Query: 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 168
+ I +V + + +T H+G + D +FG S DG+ L+ +
Sbjct: 33 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI 92
Query: 169 DLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227
+ A H + VN+V +A E G L+ S D V + F G + +++
Sbjct: 93 AVHA--------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE---FKENGTTSPIII 141
Query: 228 -GHLEGITFI-------------DSRRDGRYFISNGKDQTTKLW 257
H G+ + ++ R F++ G D K+W
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 26/164 (15%)
Query: 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 168
+ I +V + + +T H+G + D +FG S DG+ ++ +
Sbjct: 33 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92
Query: 169 DLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227
+ A H + VN+V +A E G ++ S D V + F G + +++
Sbjct: 93 AVHA--------VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE---FKENGTTSPIII 141
Query: 228 -GHLEGITFI-------------DSRRDGRYFISNGKDQTTKLW 257
H G+ + ++ R F++ G D K+W
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,363,630
Number of Sequences: 62578
Number of extensions: 522429
Number of successful extensions: 2014
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 441
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)