Query 015371
Match_columns 408
No_of_seqs 841 out of 1446
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 05:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.6E-58 1.2E-62 354.3 28.4 318 5-382 119-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 4.9E-56 1.1E-60 343.5 24.8 294 34-388 109-443 (480)
3 KOG0286 G-protein beta subunit 100.0 2.7E-51 5.9E-56 306.2 32.4 294 31-382 46-343 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.7E-52 1.2E-56 324.8 23.5 283 38-382 173-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-48 9E-53 303.2 21.4 273 6-340 180-458 (459)
6 KOG0315 G-protein beta subunit 100.0 2.4E-45 5.3E-50 268.3 28.5 283 52-390 10-294 (311)
7 KOG0645 WD40 repeat protein [G 100.0 3.8E-44 8.3E-49 265.2 31.9 293 32-384 6-311 (312)
8 KOG0293 WD40 repeat-containing 100.0 8.7E-46 1.9E-50 289.6 24.4 304 26-386 210-515 (519)
9 KOG0279 G protein beta subunit 100.0 2.3E-44 5E-49 267.5 30.5 290 34-384 9-313 (315)
10 KOG0291 WD40-repeat-containing 100.0 8.3E-44 1.8E-48 298.7 36.4 336 5-386 100-510 (893)
11 KOG0265 U5 snRNP-specific prot 100.0 8.2E-45 1.8E-49 272.6 26.7 293 34-382 41-336 (338)
12 KOG0273 Beta-transducin family 100.0 7E-44 1.5E-48 283.3 27.4 297 35-388 173-486 (524)
13 KOG0273 Beta-transducin family 100.0 2.8E-43 6.1E-48 279.9 30.5 315 5-384 182-523 (524)
14 KOG0295 WD40 repeat-containing 100.0 2.4E-44 5.2E-49 276.9 23.2 292 31-383 99-405 (406)
15 KOG0284 Polyadenylation factor 100.0 2.2E-44 4.7E-49 281.2 20.5 287 40-387 96-383 (464)
16 KOG0315 G-protein beta subunit 100.0 5.2E-42 1.1E-46 250.9 28.9 293 14-363 11-309 (311)
17 KOG0291 WD40-repeat-containing 100.0 1.4E-41 3.1E-46 285.3 35.2 339 5-385 311-710 (893)
18 KOG0318 WD40 repeat stress pro 100.0 4.8E-41 1E-45 270.9 36.5 343 7-389 153-565 (603)
19 KOG0266 WD40 repeat-containing 100.0 4.8E-42 1E-46 297.3 32.4 294 35-384 153-454 (456)
20 KOG0282 mRNA splicing factor [ 100.0 5.4E-44 1.2E-48 285.0 18.3 298 27-382 201-503 (503)
21 KOG0319 WD40-repeat-containing 100.0 4E-42 8.7E-47 287.8 29.6 340 6-387 110-580 (775)
22 KOG0296 Angio-associated migra 100.0 4.5E-41 9.7E-46 259.1 30.4 315 6-384 69-398 (399)
23 KOG0285 Pleiotropic regulator 100.0 3.5E-41 7.6E-46 259.2 27.2 288 34-385 145-440 (460)
24 cd00200 WD40 WD40 domain, foun 100.0 2.8E-40 6.1E-45 275.5 35.1 287 34-382 3-289 (289)
25 KOG0318 WD40 repeat stress pro 100.0 2.1E-39 4.5E-44 261.5 38.1 380 7-388 24-521 (603)
26 KOG0263 Transcription initiati 100.0 1.9E-42 4E-47 292.4 20.2 282 34-388 372-653 (707)
27 KOG0316 Conserved WD40 repeat- 100.0 2.3E-40 5E-45 240.4 26.5 290 29-383 6-298 (307)
28 KOG0286 G-protein beta subunit 100.0 3.7E-40 8E-45 246.8 28.1 277 4-340 58-343 (343)
29 PLN00181 protein SPA1-RELATED; 100.0 1.8E-39 3.9E-44 302.3 38.2 296 35-383 478-792 (793)
30 KOG0279 G protein beta subunit 100.0 2.9E-39 6.3E-44 240.4 29.4 282 7-342 21-313 (315)
31 KOG0319 WD40-repeat-containing 100.0 2.5E-39 5.4E-44 271.2 26.8 296 33-387 316-622 (775)
32 KOG0284 Polyadenylation factor 100.0 1.4E-40 3.1E-45 260.0 18.0 276 5-342 100-380 (464)
33 KOG0263 Transcription initiati 100.0 1.8E-39 3.9E-44 274.4 25.8 235 5-261 382-650 (707)
34 KOG0276 Vesicle coat complex C 100.0 8.6E-39 1.9E-43 263.3 25.2 285 34-379 7-294 (794)
35 KOG0296 Angio-associated migra 100.0 3.5E-38 7.5E-43 243.2 26.4 305 31-388 55-360 (399)
36 KOG1407 WD40 repeat protein [F 100.0 6.6E-38 1.4E-42 231.0 25.6 288 34-384 14-311 (313)
37 KOG0306 WD40-repeat-containing 100.0 6.3E-37 1.4E-41 257.4 30.6 287 34-385 367-665 (888)
38 KOG0643 Translation initiation 100.0 1.1E-36 2.4E-41 225.4 28.2 290 33-385 3-318 (327)
39 KOG0772 Uncharacterized conser 100.0 8.8E-38 1.9E-42 251.7 23.3 314 26-382 153-485 (641)
40 KOG0281 Beta-TrCP (transducin 100.0 9.5E-39 2E-43 245.2 17.0 274 39-388 196-481 (499)
41 KOG0278 Serine/threonine kinas 100.0 4.5E-38 9.7E-43 230.6 19.7 293 31-389 5-302 (334)
42 KOG0275 Conserved WD40 repeat- 100.0 1.9E-38 4E-43 241.7 17.9 288 38-382 211-507 (508)
43 KOG0306 WD40-repeat-containing 100.0 3.4E-36 7.4E-41 253.1 32.4 341 6-386 70-582 (888)
44 KOG0266 WD40 repeat-containing 100.0 1.3E-36 2.7E-41 263.6 30.8 277 5-342 163-454 (456)
45 KOG0295 WD40 repeat-containing 100.0 6.4E-37 1.4E-41 236.2 23.9 274 8-341 115-405 (406)
46 KOG0285 Pleiotropic regulator 100.0 3.2E-37 7E-42 237.5 22.2 248 80-388 146-393 (460)
47 KOG0640 mRNA cleavage stimulat 100.0 2.9E-37 6.2E-42 233.5 21.5 299 34-384 106-426 (430)
48 KOG0277 Peroxisomal targeting 100.0 8.6E-37 1.9E-41 224.3 22.2 283 44-383 12-308 (311)
49 KOG0293 WD40 repeat-containing 100.0 7.9E-37 1.7E-41 239.6 22.8 276 7-343 230-514 (519)
50 KOG0265 U5 snRNP-specific prot 100.0 1E-35 2.3E-40 223.8 27.1 276 5-339 51-335 (338)
51 KOG0316 Conserved WD40 repeat- 100.0 9.7E-37 2.1E-41 221.6 20.3 247 81-388 13-261 (307)
52 KOG0288 WD40 repeat protein Ti 100.0 8.9E-38 1.9E-42 244.7 15.5 302 21-382 156-459 (459)
53 KOG0645 WD40 repeat protein [G 100.0 6E-35 1.3E-39 216.7 29.6 281 4-342 17-311 (312)
54 KOG0292 Vesicle coat complex C 100.0 5.9E-36 1.3E-40 256.2 25.8 294 36-386 5-323 (1202)
55 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-34 7.8E-39 217.5 32.5 296 34-388 8-307 (311)
56 KOG0313 Microtubule binding pr 100.0 2.5E-35 5.5E-40 228.6 26.2 291 34-385 99-419 (423)
57 KOG0283 WD40 repeat-containing 100.0 5.8E-36 1.3E-40 255.4 24.6 308 34-387 260-579 (712)
58 KOG0281 Beta-TrCP (transducin 100.0 4.5E-37 9.7E-42 236.1 14.3 241 85-393 197-437 (499)
59 KOG0276 Vesicle coat complex C 100.0 1.3E-35 2.9E-40 244.6 22.3 250 84-389 12-262 (794)
60 cd00200 WD40 WD40 domain, foun 100.0 9.5E-34 2.1E-38 236.1 34.1 275 4-340 12-289 (289)
61 PLN00181 protein SPA1-RELATED; 100.0 1.4E-33 2.9E-38 263.1 38.2 289 4-341 486-792 (793)
62 KOG0310 Conserved WD40 repeat- 100.0 1.1E-34 2.4E-39 232.3 23.7 293 35-390 21-315 (487)
63 KOG0268 Sof1-like rRNA process 100.0 1.1E-35 2.4E-40 229.3 17.3 287 35-388 61-349 (433)
64 KOG2096 WD40 repeat protein [G 100.0 3.8E-34 8.3E-39 217.4 24.1 307 35-382 81-400 (420)
65 KOG0274 Cdc4 and related F-box 100.0 7.1E-34 1.5E-38 245.3 28.9 286 33-389 200-487 (537)
66 KOG0300 WD40 repeat-containing 100.0 1.8E-34 3.9E-39 219.4 21.4 305 34-387 142-479 (481)
67 KOG0292 Vesicle coat complex C 100.0 2.1E-33 4.6E-38 240.6 30.5 241 3-263 11-283 (1202)
68 KOG0641 WD40 repeat protein [G 100.0 3E-32 6.5E-37 197.5 31.1 290 37-384 29-349 (350)
69 KOG0305 Anaphase promoting com 100.0 1.5E-33 3.2E-38 234.3 27.7 281 45-391 182-468 (484)
70 KOG4283 Transcription-coupled 100.0 1.1E-33 2.4E-38 212.6 23.6 299 35-383 38-364 (397)
71 PTZ00421 coronin; Provisional 100.0 8.7E-33 1.9E-37 238.5 32.7 274 38-366 18-315 (493)
72 KOG0973 Histone transcription 100.0 1.3E-33 2.8E-38 247.4 26.0 309 37-386 10-357 (942)
73 KOG0313 Microtubule binding pr 100.0 5E-33 1.1E-37 216.0 24.9 285 13-341 115-417 (423)
74 KOG0277 Peroxisomal targeting 100.0 2.5E-33 5.3E-38 206.2 21.7 245 39-341 59-308 (311)
75 KOG1408 WD40 repeat protein [F 100.0 2.1E-33 4.5E-38 235.5 23.8 336 44-386 328-715 (1080)
76 KOG0299 U3 snoRNP-associated p 100.0 1E-32 2.3E-37 219.4 25.6 303 33-385 135-457 (479)
77 KOG0275 Conserved WD40 repeat- 100.0 8.2E-34 1.8E-38 216.5 18.1 255 86-389 214-472 (508)
78 KOG0647 mRNA export protein (c 100.0 2.3E-32 4.9E-37 206.1 24.7 280 39-372 26-311 (347)
79 KOG0282 mRNA splicing factor [ 100.0 4.1E-34 8.8E-39 228.8 15.2 253 79-388 208-466 (503)
80 KOG1446 Histone H3 (Lys4) meth 100.0 3.4E-31 7.3E-36 201.4 28.8 249 85-389 14-267 (311)
81 KOG0289 mRNA splicing factor [ 100.0 8.8E-32 1.9E-36 212.7 26.5 282 41-383 220-505 (506)
82 KOG0301 Phospholipase A2-activ 100.0 7E-32 1.5E-36 225.3 27.3 286 33-390 7-294 (745)
83 PTZ00421 coronin; Provisional 100.0 5.1E-31 1.1E-35 227.5 30.4 257 87-388 22-294 (493)
84 KOG0639 Transducin-like enhanc 100.0 3.6E-32 7.7E-37 219.1 20.9 287 36-383 415-703 (705)
85 KOG1036 Mitotic spindle checkp 100.0 2.5E-30 5.3E-35 195.9 28.9 279 40-374 13-294 (323)
86 KOG0305 Anaphase promoting com 100.0 3.5E-31 7.6E-36 220.3 26.3 277 6-344 182-463 (484)
87 KOG1407 WD40 repeat protein [F 100.0 2.9E-30 6.3E-35 190.9 27.9 266 3-333 22-293 (313)
88 KOG0264 Nucleosome remodeling 100.0 7.9E-32 1.7E-36 214.3 20.7 270 38-385 122-405 (422)
89 KOG0299 U3 snoRNP-associated p 100.0 2.2E-31 4.7E-36 212.0 23.0 263 79-388 136-414 (479)
90 KOG0308 Conserved WD40 repeat- 100.0 3.2E-32 7E-37 225.7 19.0 291 38-385 19-328 (735)
91 KOG0294 WD40 repeat-containing 100.0 1.6E-30 3.6E-35 197.3 26.5 268 55-387 4-284 (362)
92 KOG0278 Serine/threonine kinas 100.0 1.9E-32 4.2E-37 201.2 15.1 277 6-347 19-302 (334)
93 KOG0283 WD40 repeat-containing 100.0 1.9E-31 4E-36 228.0 23.2 234 5-263 271-579 (712)
94 PTZ00420 coronin; Provisional 100.0 8.8E-30 1.9E-34 220.8 33.5 257 58-367 50-319 (568)
95 KOG4328 WD40 protein [Function 100.0 4.4E-31 9.6E-36 210.1 23.2 311 31-384 177-495 (498)
96 KOG2055 WD40 repeat protein [G 100.0 8.9E-31 1.9E-35 208.6 23.6 293 40-384 213-512 (514)
97 KOG0274 Cdc4 and related F-box 100.0 5.1E-30 1.1E-34 221.5 29.7 269 15-354 220-494 (537)
98 KOG0640 mRNA cleavage stimulat 100.0 7.2E-31 1.6E-35 199.0 21.1 281 5-341 116-425 (430)
99 KOG0289 mRNA splicing factor [ 100.0 4.4E-30 9.4E-35 203.2 26.2 278 6-341 224-505 (506)
100 KOG1332 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 195.0 16.8 256 36-342 7-286 (299)
101 KOG1408 WD40 repeat protein [F 100.0 1E-29 2.2E-34 213.5 29.0 374 4-388 81-675 (1080)
102 KOG0308 Conserved WD40 repeat- 100.0 1.3E-30 2.9E-35 216.1 21.9 243 11-262 35-287 (735)
103 PTZ00420 coronin; Provisional 100.0 7E-29 1.5E-33 215.2 32.7 230 103-386 50-295 (568)
104 KOG2106 Uncharacterized conser 100.0 1.8E-28 3.9E-33 197.8 32.2 325 4-389 107-482 (626)
105 KOG0269 WD40 repeat-containing 100.0 1.3E-30 2.7E-35 220.5 20.1 294 40-387 39-343 (839)
106 KOG0641 WD40 repeat protein [G 100.0 1.1E-28 2.3E-33 179.1 27.2 284 3-342 34-349 (350)
107 KOG2048 WD40 repeat protein [G 100.0 9.4E-28 2E-32 200.3 36.7 239 4-264 28-279 (691)
108 KOG0643 Translation initiation 100.0 2.1E-29 4.5E-34 187.0 24.0 289 6-342 15-317 (327)
109 KOG1539 WD repeat protein [Gen 100.0 9.2E-29 2E-33 211.0 30.2 314 19-383 181-647 (910)
110 KOG0310 Conserved WD40 repeat- 100.0 5.5E-30 1.2E-34 205.5 21.3 240 86-385 27-269 (487)
111 KOG0647 mRNA export protein (c 100.0 1.8E-29 3.9E-34 190.6 22.2 244 83-386 25-283 (347)
112 KOG0973 Histone transcription 100.0 1.8E-29 3.8E-34 221.7 25.3 283 4-344 16-357 (942)
113 KOG0772 Uncharacterized conser 100.0 2.8E-29 6.1E-34 202.9 24.5 285 5-342 171-487 (641)
114 KOG1063 RNA polymerase II elon 100.0 1E-28 2.3E-33 206.4 28.3 330 5-387 195-651 (764)
115 KOG0294 WD40 repeat-containing 100.0 2.5E-28 5.5E-33 185.5 26.3 263 33-362 36-305 (362)
116 KOG0288 WD40 repeat protein Ti 100.0 1.1E-30 2.3E-35 205.3 13.2 250 80-390 170-423 (459)
117 KOG0321 WD40 repeat-containing 100.0 8.9E-29 1.9E-33 205.0 24.1 297 45-390 54-397 (720)
118 KOG2106 Uncharacterized conser 100.0 1.8E-27 3.9E-32 192.1 30.1 332 5-383 250-625 (626)
119 KOG1332 Vesicle coat complex C 100.0 4.5E-29 9.8E-34 182.9 19.0 260 82-388 8-290 (299)
120 KOG1274 WD40 repeat protein [G 100.0 6.1E-28 1.3E-32 208.2 28.6 278 38-381 11-297 (933)
121 KOG1063 RNA polymerase II elon 100.0 2.8E-28 6.1E-33 203.9 25.6 345 7-384 322-763 (764)
122 KOG1273 WD40 repeat protein [G 100.0 4.4E-28 9.6E-33 184.3 24.0 291 43-388 26-326 (405)
123 KOG0646 WD40 repeat protein [G 100.0 3.7E-28 8.1E-33 194.0 24.8 270 58-386 13-309 (476)
124 KOG0650 WD40 repeat nucleolar 100.0 1.9E-28 4.1E-33 201.7 23.6 306 26-381 386-732 (733)
125 KOG1036 Mitotic spindle checkp 100.0 6.4E-28 1.4E-32 182.9 23.6 241 85-388 13-266 (323)
126 KOG2048 WD40 repeat protein [G 100.0 1.5E-26 3.2E-31 193.2 33.0 370 4-384 72-548 (691)
127 KOG0268 Sof1-like rRNA process 100.0 3.4E-29 7.3E-34 193.8 15.5 274 6-346 71-349 (433)
128 KOG2919 Guanine nucleotide-bin 100.0 1.1E-27 2.5E-32 182.7 22.9 284 41-375 50-361 (406)
129 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.3E-26 4.9E-31 192.8 33.1 276 52-388 1-283 (300)
130 KOG2445 Nuclear pore complex c 100.0 3E-27 6.4E-32 179.2 24.3 279 37-384 10-318 (361)
131 KOG1539 WD repeat protein [Gen 100.0 4.9E-26 1.1E-30 194.5 32.9 200 43-261 162-366 (910)
132 KOG1274 WD40 repeat protein [G 100.0 4.2E-27 9.1E-32 203.1 26.3 250 83-386 11-264 (933)
133 KOG2055 WD40 repeat protein [G 100.0 5.2E-27 1.1E-31 187.3 24.4 286 3-342 215-512 (514)
134 KOG0264 Nucleosome remodeling 100.0 7.9E-28 1.7E-32 191.6 18.8 216 34-261 171-405 (422)
135 KOG0301 Phospholipase A2-activ 100.0 2.4E-27 5.1E-32 198.4 20.8 240 80-385 9-250 (745)
136 KOG0267 Microtubule severing p 100.0 9.4E-29 2E-33 207.7 11.7 257 52-376 4-260 (825)
137 KOG0646 WD40 repeat protein [G 100.0 3.5E-27 7.6E-32 188.5 20.0 271 53-367 51-332 (476)
138 KOG0269 WD40 repeat-containing 100.0 1.4E-27 3E-32 202.3 17.0 248 87-386 41-298 (839)
139 KOG0639 Transducin-like enhanc 100.0 2.9E-27 6.3E-32 191.0 17.9 249 83-389 417-668 (705)
140 KOG0300 WD40 repeat-containing 100.0 7.6E-27 1.7E-31 178.1 19.1 255 79-393 142-437 (481)
141 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.8E-24 6E-29 180.2 34.9 263 34-364 25-300 (300)
142 KOG1034 Transcriptional repres 100.0 8.7E-26 1.9E-30 172.8 22.8 307 36-384 34-383 (385)
143 KOG4283 Transcription-coupled 100.0 2.1E-26 4.6E-31 173.7 18.8 233 83-390 41-282 (397)
144 KOG1188 WD40 repeat protein [G 99.9 3.4E-26 7.4E-31 175.9 19.3 289 53-385 41-347 (376)
145 KOG0307 Vesicle coat complex C 99.9 4E-27 8.8E-32 208.1 15.0 290 45-389 11-332 (1049)
146 KOG4227 WD40 repeat protein [G 99.9 2.5E-25 5.4E-30 174.6 21.9 301 35-383 51-386 (609)
147 KOG0267 Microtubule severing p 99.9 1.1E-27 2.5E-32 201.3 9.3 198 143-385 30-227 (825)
148 KOG0302 Ribosome Assembly prot 99.9 2.9E-25 6.3E-30 173.0 20.9 214 35-261 146-379 (440)
149 KOG0270 WD40 repeat-containing 99.9 2.7E-25 5.8E-30 176.8 18.6 251 42-347 175-454 (463)
150 KOG1009 Chromatin assembly com 99.9 3.5E-24 7.6E-29 168.6 24.3 322 40-386 13-374 (434)
151 KOG0322 G-protein beta subunit 99.9 3.3E-25 7.2E-30 164.6 16.9 298 29-383 3-322 (323)
152 KOG4378 Nuclear protein COP1 [ 99.9 1E-24 2.2E-29 176.1 20.4 287 19-366 11-305 (673)
153 KOG0270 WD40 repeat-containing 99.9 3.3E-24 7.2E-29 170.6 22.9 298 44-386 129-451 (463)
154 KOG0302 Ribosome Assembly prot 99.9 8.4E-25 1.8E-29 170.5 18.3 240 6-258 168-436 (440)
155 KOG1273 WD40 repeat protein [G 99.9 1.4E-23 2.9E-28 160.1 23.9 286 4-344 26-324 (405)
156 KOG0307 Vesicle coat complex C 99.9 1.4E-25 3E-30 198.5 14.9 251 40-345 64-330 (1049)
157 KOG1007 WD repeat protein TSSC 99.9 3.2E-24 6.8E-29 161.5 19.9 286 34-385 57-362 (370)
158 KOG0321 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 179.8 20.3 261 89-390 53-353 (720)
159 KOG1517 Guanine nucleotide bin 99.9 8.1E-24 1.8E-28 185.7 24.6 307 38-387 1062-1384(1387)
160 KOG2096 WD40 repeat protein [G 99.9 1.1E-23 2.5E-28 160.8 22.3 278 64-390 63-366 (420)
161 KOG1538 Uncharacterized conser 99.9 2.2E-24 4.7E-29 180.6 18.9 269 5-342 16-293 (1081)
162 KOG1334 WD40 repeat protein [G 99.9 1.2E-24 2.6E-29 175.2 16.4 322 34-393 136-475 (559)
163 KOG1310 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 170.7 22.1 225 31-261 41-304 (758)
164 KOG4378 Nuclear protein COP1 [ 99.9 2E-23 4.3E-28 168.8 20.1 275 54-390 5-286 (673)
165 KOG4497 Uncharacterized conser 99.9 2.9E-23 6.2E-28 159.4 18.5 346 7-387 14-394 (447)
166 KOG2445 Nuclear pore complex c 99.9 5.2E-22 1.1E-26 151.0 24.8 255 4-261 16-319 (361)
167 KOG1538 Uncharacterized conser 99.9 1.1E-22 2.4E-27 170.6 21.1 278 42-387 14-296 (1081)
168 KOG1445 Tumor-specific antigen 99.9 2.3E-22 4.9E-27 167.7 22.8 209 35-261 74-294 (1012)
169 KOG2919 Guanine nucleotide-bin 99.9 6.5E-22 1.4E-26 151.6 22.6 244 5-261 53-328 (406)
170 KOG1587 Cytoplasmic dynein int 99.9 9.8E-22 2.1E-26 169.1 26.5 282 62-393 222-525 (555)
171 KOG1963 WD40 repeat protein [G 99.9 9.1E-21 2E-25 163.8 32.3 329 4-386 163-540 (792)
172 KOG4328 WD40 protein [Function 99.9 3.5E-22 7.5E-27 159.9 20.2 252 83-387 184-453 (498)
173 KOG1034 Transcriptional repres 99.9 1.7E-22 3.8E-27 154.9 16.3 245 14-260 106-383 (385)
174 KOG0649 WD40 repeat protein [G 99.9 5.5E-21 1.2E-25 140.7 23.4 280 41-382 11-314 (325)
175 KOG0290 Conserved WD40 repeat- 99.9 3E-21 6.6E-26 145.7 22.3 290 41-380 45-361 (364)
176 COG2319 FOG: WD40 repeat [Gene 99.9 9.4E-20 2E-24 161.5 36.1 292 35-387 60-362 (466)
177 KOG0650 WD40 repeat nucleolar 99.9 2E-21 4.2E-26 160.8 22.7 289 4-339 403-732 (733)
178 PRK11028 6-phosphogluconolacto 99.9 3.1E-20 6.8E-25 156.7 30.7 279 56-385 6-305 (330)
179 KOG0290 Conserved WD40 repeat- 99.9 2.5E-21 5.4E-26 146.2 21.2 252 87-388 46-322 (364)
180 KOG1523 Actin-related protein 99.9 8.9E-21 1.9E-25 145.2 23.7 213 37-262 7-238 (361)
181 KOG0642 Cell-cycle nuclear pro 99.9 5.1E-22 1.1E-26 163.1 15.3 243 138-385 291-562 (577)
182 COG2319 FOG: WD40 repeat [Gene 99.9 2E-18 4.2E-23 153.1 38.7 312 10-385 119-443 (466)
183 KOG2110 Uncharacterized conser 99.9 8.1E-19 1.8E-23 137.2 30.7 279 40-385 5-331 (391)
184 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-21 2.4E-26 161.1 15.6 273 34-355 288-574 (577)
185 KOG1587 Cytoplasmic dynein int 99.9 2.4E-20 5.1E-25 160.7 24.4 278 22-343 224-517 (555)
186 KOG1240 Protein kinase contain 99.9 3.5E-20 7.7E-25 165.6 25.9 316 34-382 1042-1431(1431)
187 KOG0303 Actin-binding protein 99.9 2.5E-20 5.4E-25 146.7 20.4 211 35-263 76-297 (472)
188 KOG0303 Actin-binding protein 99.9 9.6E-20 2.1E-24 143.4 21.7 206 137-387 77-297 (472)
189 KOG1524 WD40 repeat-containing 99.9 2.5E-20 5.5E-25 152.5 18.0 256 5-339 18-283 (737)
190 KOG1445 Tumor-specific antigen 99.9 2.3E-20 4.9E-25 156.0 17.1 244 93-388 587-848 (1012)
191 KOG0649 WD40 repeat protein [G 99.9 2.9E-19 6.4E-24 131.7 20.9 252 87-388 12-278 (325)
192 PRK11028 6-phosphogluconolacto 99.9 6E-18 1.3E-22 142.9 31.6 251 39-342 33-304 (330)
193 PRK01742 tolB translocation pr 99.9 1.5E-19 3.2E-24 157.1 22.3 235 61-365 183-426 (429)
194 KOG1963 WD40 repeat protein [G 99.9 3.7E-18 8.1E-23 147.9 29.1 337 4-388 19-379 (792)
195 KOG2110 Uncharacterized conser 99.9 2.3E-17 5E-22 129.2 30.6 233 6-263 10-251 (391)
196 KOG1009 Chromatin assembly com 99.9 6.5E-19 1.4E-23 139.3 22.3 283 6-346 18-376 (434)
197 KOG0771 Prolactin regulatory e 99.8 5.6E-20 1.2E-24 146.1 15.5 203 145-388 148-358 (398)
198 KOG1007 WD repeat protein TSSC 99.8 3.3E-19 7.1E-24 134.8 18.3 209 38-261 121-362 (370)
199 KOG1523 Actin-related protein 99.8 9.3E-19 2E-23 134.2 20.3 253 87-375 12-269 (361)
200 KOG0644 Uncharacterized conser 99.8 1.6E-20 3.4E-25 161.4 12.0 282 34-388 184-472 (1113)
201 KOG1524 WD40 repeat-containing 99.8 2.6E-19 5.5E-24 146.7 18.3 265 38-381 12-283 (737)
202 KOG0771 Prolactin regulatory e 99.8 1.1E-19 2.3E-24 144.5 14.5 198 44-261 148-355 (398)
203 KOG1517 Guanine nucleotide bin 99.8 2.2E-18 4.8E-23 152.2 23.6 291 4-345 1067-1384(1387)
204 KOG0644 Uncharacterized conser 99.8 2.4E-20 5.1E-25 160.4 10.4 246 80-389 185-431 (1113)
205 KOG1188 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 133.9 19.2 277 16-341 43-345 (376)
206 KOG2321 WD40 repeat protein [G 99.8 1E-17 2.2E-22 138.5 24.9 294 38-391 49-350 (703)
207 KOG4227 WD40 repeat protein [G 99.8 1.3E-18 2.8E-23 137.2 18.3 263 81-387 52-325 (609)
208 KOG2394 WD40 protein DMR-N9 [G 99.8 1.6E-18 3.4E-23 142.1 19.2 250 88-390 126-458 (636)
209 KOG1272 WD40-repeat-containing 99.8 4.6E-19 1E-23 142.6 14.1 271 40-380 129-405 (545)
210 PRK03629 tolB translocation pr 99.8 6.4E-17 1.4E-21 140.3 28.2 237 62-365 179-428 (429)
211 KOG1354 Serine/threonine prote 99.8 6.8E-18 1.5E-22 130.9 18.4 270 40-344 25-361 (433)
212 KOG2139 WD40 repeat protein [G 99.8 6.8E-17 1.5E-21 126.3 24.0 316 40-384 98-431 (445)
213 PF02239 Cytochrom_D1: Cytochr 99.8 6.5E-16 1.4E-20 129.9 31.9 308 53-388 6-351 (369)
214 KOG0322 G-protein beta subunit 99.8 3.5E-18 7.5E-23 127.6 15.9 277 6-341 19-322 (323)
215 KOG2111 Uncharacterized conser 99.8 3.1E-15 6.7E-20 115.2 31.0 279 43-384 8-322 (346)
216 KOG2139 WD40 repeat protein [G 99.8 3.4E-16 7.3E-21 122.4 25.2 238 5-261 102-384 (445)
217 PRK01742 tolB translocation pr 99.8 6.2E-17 1.3E-21 140.8 22.5 214 106-384 183-401 (429)
218 KOG1310 WD40 repeat protein [G 99.8 9.4E-18 2E-22 138.1 15.9 243 79-350 44-311 (758)
219 KOG1272 WD40-repeat-containing 99.8 2.3E-18 4.9E-23 138.7 9.8 231 87-383 131-361 (545)
220 PRK02889 tolB translocation pr 99.8 5.1E-16 1.1E-20 134.9 25.3 237 62-365 176-425 (427)
221 KOG2315 Predicted translation 99.8 4.2E-15 9.2E-20 123.0 28.8 313 5-386 38-392 (566)
222 KOG2111 Uncharacterized conser 99.8 1.1E-15 2.5E-20 117.5 22.3 240 87-387 7-259 (346)
223 PRK04922 tolB translocation pr 99.8 9.8E-16 2.1E-20 133.6 25.1 234 62-364 184-432 (433)
224 KOG1240 Protein kinase contain 99.8 6.2E-16 1.4E-20 139.1 24.0 265 80-389 1043-1339(1431)
225 KOG4497 Uncharacterized conser 99.7 7.3E-16 1.6E-20 119.2 19.9 304 5-379 52-427 (447)
226 PRK05137 tolB translocation pr 99.7 5.5E-15 1.2E-19 129.2 28.3 234 62-365 182-433 (435)
227 PF02239 Cytochrom_D1: Cytochr 99.7 1.2E-14 2.7E-19 122.2 29.0 288 6-351 41-356 (369)
228 KOG1409 Uncharacterized conser 99.7 1.7E-16 3.7E-21 123.2 15.5 214 34-264 18-274 (404)
229 PRK03629 tolB translocation pr 99.7 3.7E-15 8E-20 129.4 25.2 204 31-261 189-407 (429)
230 KOG2394 WD40 protein DMR-N9 [G 99.7 1.4E-16 3.1E-21 130.8 15.3 210 49-264 182-456 (636)
231 KOG0280 Uncharacterized conser 99.7 7E-15 1.5E-19 112.0 22.2 277 61-386 45-335 (339)
232 KOG3881 Uncharacterized conser 99.7 1.3E-15 2.9E-20 120.3 18.5 268 39-366 54-343 (412)
233 COG5354 Uncharacterized protei 99.7 5.6E-14 1.2E-18 115.2 27.6 316 4-388 35-399 (561)
234 KOG2314 Translation initiation 99.7 3.5E-14 7.7E-19 117.5 26.5 320 5-386 214-575 (698)
235 PF10282 Lactonase: Lactonase, 99.7 3.3E-13 7.2E-18 114.0 32.0 287 55-385 2-323 (345)
236 PRK05137 tolB translocation pr 99.7 2.9E-14 6.4E-19 124.6 26.1 217 108-389 183-417 (435)
237 KOG1334 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 125.5 13.6 266 80-387 137-427 (559)
238 PF08662 eIF2A: Eukaryotic tra 99.7 8.3E-15 1.8E-19 111.9 18.2 151 187-386 9-181 (194)
239 PRK02889 tolB translocation pr 99.7 3E-14 6.6E-19 123.9 24.1 197 143-385 197-404 (427)
240 KOG3881 Uncharacterized conser 99.7 6.5E-15 1.4E-19 116.5 17.7 208 38-261 103-321 (412)
241 PRK04922 tolB translocation pr 99.7 3.9E-14 8.5E-19 123.6 23.3 217 107-388 184-415 (433)
242 TIGR02800 propeller_TolB tol-p 99.7 2.1E-13 4.6E-18 119.5 28.0 233 62-363 170-417 (417)
243 PRK04792 tolB translocation pr 99.7 1.4E-13 2.9E-18 120.1 26.1 234 63-365 199-447 (448)
244 PF08662 eIF2A: Eukaryotic tra 99.7 1.9E-14 4.2E-19 109.9 18.2 149 44-213 9-178 (194)
245 COG2706 3-carboxymuconate cycl 99.7 3.3E-12 7.1E-17 100.9 29.8 282 61-386 15-323 (346)
246 PF10282 Lactonase: Lactonase, 99.7 9.9E-12 2.1E-16 105.1 35.2 285 40-362 36-345 (345)
247 PRK00178 tolB translocation pr 99.6 4.8E-13 1E-17 117.3 28.0 234 63-365 180-428 (430)
248 KOG0974 WD-repeat protein WDR6 99.6 1.9E-14 4.2E-19 127.6 18.5 198 144-388 90-292 (967)
249 KOG2321 WD40 repeat protein [G 99.6 5.3E-14 1.2E-18 117.0 19.3 254 83-388 49-306 (703)
250 PRK01029 tolB translocation pr 99.6 1.8E-12 3.8E-17 112.3 27.0 242 62-366 165-426 (428)
251 KOG1354 Serine/threonine prote 99.6 6.4E-14 1.4E-18 109.2 15.8 273 87-388 27-363 (433)
252 KOG0280 Uncharacterized conser 99.6 5E-13 1.1E-17 102.1 19.7 204 41-261 70-285 (339)
253 KOG4547 WD40 repeat-containing 99.6 5.3E-13 1.1E-17 111.6 21.7 194 49-261 2-221 (541)
254 TIGR02800 propeller_TolB tol-p 99.6 1.6E-12 3.5E-17 114.0 25.6 193 143-385 191-398 (417)
255 TIGR02658 TTQ_MADH_Hv methylam 99.6 3.7E-11 8E-16 98.9 31.3 277 62-388 27-334 (352)
256 KOG1064 RAVE (regulator of V-A 99.6 2.6E-14 5.7E-19 133.5 14.0 220 87-377 2210-2439(2439)
257 KOG0974 WD-repeat protein WDR6 99.6 2.7E-12 5.8E-17 114.3 25.5 199 41-261 88-289 (967)
258 KOG2041 WD40 repeat protein [G 99.6 6.4E-13 1.4E-17 113.8 20.8 286 40-383 14-336 (1189)
259 KOG2041 WD40 repeat protein [G 99.6 1.7E-12 3.6E-17 111.3 23.1 227 4-251 17-279 (1189)
260 PRK00178 tolB translocation pr 99.6 3E-12 6.5E-17 112.3 25.2 196 143-388 200-410 (430)
261 COG5170 CDC55 Serine/threonine 99.6 1.7E-13 3.6E-18 105.6 13.8 267 40-341 26-366 (460)
262 KOG1064 RAVE (regulator of V-A 99.6 3.9E-14 8.4E-19 132.4 12.3 192 35-262 2203-2400(2439)
263 PRK04792 tolB translocation pr 99.5 8.7E-12 1.9E-16 108.9 24.5 196 143-388 219-429 (448)
264 COG4946 Uncharacterized protei 99.5 6E-11 1.3E-15 97.1 27.3 190 150-388 275-481 (668)
265 PF04762 IKI3: IKI3 family; I 99.5 7.7E-11 1.7E-15 110.4 31.9 325 39-388 74-460 (928)
266 COG2706 3-carboxymuconate cycl 99.5 7.9E-10 1.7E-14 87.7 32.2 290 35-363 34-345 (346)
267 PRK01029 tolB translocation pr 99.5 2.8E-12 6.1E-17 111.0 20.6 216 5-242 188-426 (428)
268 KOG2315 Predicted translation 99.5 1.6E-11 3.4E-16 102.3 23.1 292 3-365 75-411 (566)
269 KOG4547 WD40 repeat-containing 99.5 5.4E-12 1.2E-16 105.7 19.4 189 151-385 3-221 (541)
270 KOG1912 WD40 repeat protein [G 99.5 6.5E-11 1.4E-15 102.6 25.8 235 5-261 19-305 (1062)
271 TIGR03300 assembly_YfgL outer 99.5 2.2E-10 4.7E-15 98.9 29.4 263 52-389 65-343 (377)
272 COG4946 Uncharacterized protei 99.5 3.6E-10 7.9E-15 92.6 27.3 149 35-203 354-507 (668)
273 COG5354 Uncharacterized protei 99.5 8E-11 1.7E-15 97.1 23.6 283 35-385 27-349 (561)
274 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.6E-09 3.4E-14 89.5 30.9 241 48-351 53-339 (352)
275 KOG0309 Conserved WD40 repeat- 99.5 1E-12 2.2E-17 112.9 12.2 291 6-385 29-340 (1081)
276 TIGR03300 assembly_YfgL outer 99.5 1.2E-09 2.6E-14 94.3 31.5 261 51-381 104-376 (377)
277 KOG2314 Translation initiation 99.4 8.4E-11 1.8E-15 98.0 22.5 278 43-385 213-526 (698)
278 PF04762 IKI3: IKI3 family; I 99.4 8.9E-10 1.9E-14 103.4 31.7 320 37-386 117-521 (928)
279 PLN02919 haloacid dehalogenase 99.4 6.7E-10 1.4E-14 106.3 29.6 271 89-387 571-891 (1057)
280 KOG1409 Uncharacterized conser 99.4 7.7E-11 1.7E-15 92.4 18.7 250 81-389 20-275 (404)
281 KOG4190 Uncharacterized conser 99.4 1.9E-12 4.2E-17 107.8 10.0 287 34-380 729-1032(1034)
282 KOG4714 Nucleoporin [Nuclear s 99.4 5.4E-11 1.2E-15 89.6 14.5 201 43-261 39-255 (319)
283 PF15492 Nbas_N: Neuroblastoma 99.3 3.5E-09 7.7E-14 81.6 24.0 237 7-264 3-263 (282)
284 KOG4532 WD40-like repeat conta 99.3 5.9E-10 1.3E-14 84.6 19.1 268 60-388 50-335 (344)
285 KOG0882 Cyclophilin-related pe 99.3 8.9E-11 1.9E-15 95.4 15.0 319 38-381 7-369 (558)
286 PRK04043 tolB translocation pr 99.3 7.9E-09 1.7E-13 89.2 27.9 209 87-362 189-419 (419)
287 PLN02919 haloacid dehalogenase 99.3 1.5E-08 3.3E-13 97.2 31.6 214 42-264 625-892 (1057)
288 PF15492 Nbas_N: Neuroblastoma 99.3 1.6E-08 3.6E-13 78.0 25.6 240 91-389 3-264 (282)
289 KOG3914 WD repeat protein WDR4 99.3 7.2E-11 1.6E-15 94.5 12.6 164 42-226 64-231 (390)
290 KOG2695 WD40 repeat protein [G 99.3 3.1E-11 6.6E-16 94.6 9.8 169 157-363 228-401 (425)
291 COG5170 CDC55 Serine/threonine 99.3 2E-10 4.3E-15 89.0 12.9 269 86-383 27-366 (460)
292 KOG4532 WD40-like repeat conta 99.2 2.6E-09 5.5E-14 81.2 17.2 196 152-388 83-286 (344)
293 PRK04043 tolB translocation pr 99.2 1.4E-08 3E-13 87.7 24.1 199 33-261 181-401 (419)
294 PF08450 SGL: SMP-30/Gluconola 99.2 7.8E-08 1.7E-12 77.7 27.0 222 90-371 4-242 (246)
295 KOG3914 WD repeat protein WDR4 99.2 1.7E-09 3.6E-14 86.9 15.4 160 87-265 64-228 (390)
296 KOG4714 Nucleoporin [Nuclear s 99.2 3.6E-10 7.8E-15 85.3 10.6 165 34-214 83-254 (319)
297 KOG0882 Cyclophilin-related pe 99.1 3.2E-09 6.9E-14 86.6 15.2 263 84-388 8-309 (558)
298 KOG4190 Uncharacterized conser 99.1 6.1E-10 1.3E-14 93.2 11.0 243 79-382 729-986 (1034)
299 KOG1912 WD40 repeat protein [G 99.1 2.8E-08 6E-13 86.9 21.0 272 87-386 17-306 (1062)
300 KOG0309 Conserved WD40 repeat- 99.1 5.4E-10 1.2E-14 96.6 10.5 226 87-367 26-258 (1081)
301 PRK11138 outer membrane biogen 99.1 7.6E-07 1.6E-11 77.4 30.2 264 52-383 120-393 (394)
302 PF08450 SGL: SMP-30/Gluconola 99.1 2.8E-06 6E-11 68.7 31.0 218 5-248 3-243 (246)
303 PF00400 WD40: WD domain, G-be 99.1 4.1E-10 8.8E-15 61.5 5.6 39 344-382 1-39 (39)
304 KOG1275 PAB-dependent poly(A) 99.1 7.7E-09 1.7E-13 91.8 15.6 182 152-382 146-340 (1118)
305 PF13360 PQQ_2: PQQ-like domai 99.1 3.9E-07 8.5E-12 73.4 24.7 224 106-388 2-234 (238)
306 PF13360 PQQ_2: PQQ-like domai 99.1 6.1E-07 1.3E-11 72.3 25.7 221 61-348 2-236 (238)
307 KOG2695 WD40 repeat protein [G 99.1 1.2E-09 2.7E-14 85.8 9.3 146 101-264 228-380 (425)
308 PF07433 DUF1513: Protein of u 99.0 1.4E-06 3E-11 69.7 25.1 234 88-378 7-279 (305)
309 KOG1832 HIV-1 Vpr-binding prot 99.0 4.3E-10 9.2E-15 99.4 6.0 194 34-263 1095-1294(1516)
310 PRK11138 outer membrane biogen 99.0 1.3E-06 2.8E-11 75.9 27.5 266 52-388 69-357 (394)
311 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.5E-14 59.7 5.3 36 33-68 4-39 (39)
312 KOG1920 IkappaB kinase complex 99.0 2.6E-06 5.7E-11 78.8 27.3 238 86-383 69-364 (1265)
313 KOG3621 WD40 repeat-containing 98.9 5.4E-07 1.2E-11 78.3 21.6 144 39-192 32-179 (726)
314 KOG1920 IkappaB kinase complex 98.9 2.9E-06 6.2E-11 78.6 27.3 215 40-261 68-323 (1265)
315 PF07433 DUF1513: Protein of u 98.9 5.5E-06 1.2E-10 66.4 25.7 199 42-261 6-248 (305)
316 KOG3617 WD40 and TPR repeat-co 98.9 1.1E-07 2.3E-12 84.3 16.3 110 88-214 18-131 (1416)
317 PF06433 Me-amine-dh_H: Methyl 98.9 3.3E-06 7.1E-11 68.5 23.2 278 62-388 17-324 (342)
318 KOG2066 Vacuolar assembly/sort 98.9 2.3E-07 5E-12 81.6 17.9 142 50-214 81-233 (846)
319 PF14583 Pectate_lyase22: Olig 98.9 1.2E-05 2.7E-10 66.6 26.3 200 41-261 36-273 (386)
320 KOG1645 RING-finger-containing 98.9 1.7E-07 3.8E-12 75.7 14.4 236 139-385 191-462 (463)
321 KOG1832 HIV-1 Vpr-binding prot 98.8 6.1E-09 1.3E-13 92.3 5.9 192 139-385 1099-1292(1516)
322 PF06977 SdiA-regulated: SdiA- 98.8 1.8E-05 4E-10 62.5 24.7 211 34-257 15-247 (248)
323 KOG2114 Vacuolar assembly/sort 98.8 3.4E-06 7.4E-11 75.2 22.1 207 42-261 27-244 (933)
324 KOG1275 PAB-dependent poly(A) 98.8 3.6E-07 7.9E-12 81.6 15.8 186 52-259 147-341 (1118)
325 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.2E-05 2.6E-10 68.7 24.2 204 39-246 41-296 (353)
326 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.5E-05 3.2E-10 68.1 23.9 105 49-160 1-119 (353)
327 cd00216 PQQ_DH Dehydrogenases 98.7 6.6E-05 1.4E-09 67.0 28.6 278 52-391 61-431 (488)
328 KOG4649 PQQ (pyrrolo-quinoline 98.7 4.7E-05 1E-09 58.5 24.5 137 52-208 23-159 (354)
329 KOG2066 Vacuolar assembly/sort 98.7 2.5E-06 5.5E-11 75.4 18.7 146 87-263 41-190 (846)
330 KOG3617 WD40 and TPR repeat-co 98.7 1.3E-06 2.9E-11 77.7 16.9 330 7-375 21-376 (1416)
331 KOG2114 Vacuolar assembly/sort 98.7 5.2E-06 1.1E-10 74.1 20.4 195 8-214 30-243 (933)
332 PRK02888 nitrous-oxide reducta 98.7 9.8E-06 2.1E-10 71.4 21.6 256 55-343 69-405 (635)
333 PF08596 Lgl_C: Lethal giant l 98.7 3.7E-05 8E-10 65.7 24.0 258 87-383 3-334 (395)
334 PF11768 DUF3312: Protein of u 98.7 2.4E-06 5.2E-11 73.2 16.1 111 144-261 208-330 (545)
335 PF04053 Coatomer_WDAD: Coatom 98.6 6.3E-05 1.4E-09 65.2 23.2 219 3-261 34-263 (443)
336 PF11768 DUF3312: Protein of u 98.6 1.2E-05 2.5E-10 69.1 17.4 114 87-214 207-329 (545)
337 KOG1008 Uncharacterized conser 98.5 2.9E-08 6.4E-13 84.9 2.1 201 144-386 59-277 (783)
338 PF04053 Coatomer_WDAD: Coatom 98.5 5.3E-05 1.1E-09 65.7 21.5 185 36-256 28-219 (443)
339 COG0823 TolB Periplasmic compo 98.5 5.4E-05 1.2E-09 65.4 20.7 182 143-373 194-388 (425)
340 KOG1008 Uncharacterized conser 98.5 4.8E-08 1E-12 83.6 2.2 207 40-261 56-276 (783)
341 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00028 6E-09 54.4 22.0 143 97-260 23-165 (354)
342 KOG1645 RING-finger-containing 98.5 2.9E-05 6.3E-10 63.3 16.7 81 35-119 188-270 (463)
343 COG0823 TolB Periplasmic compo 98.5 0.0001 2.2E-09 63.7 21.0 155 87-261 194-359 (425)
344 KOG3621 WD40 repeat-containing 98.4 1.6E-05 3.4E-10 69.6 15.2 146 87-247 35-186 (726)
345 cd00216 PQQ_DH Dehydrogenases 98.4 0.00084 1.8E-08 60.1 26.6 258 53-352 111-434 (488)
346 PRK02888 nitrous-oxide reducta 98.4 9.3E-05 2E-09 65.5 19.2 106 143-250 322-451 (635)
347 PF06433 Me-amine-dh_H: Methyl 98.3 0.00098 2.1E-08 54.6 26.8 155 42-214 37-213 (342)
348 PF06977 SdiA-regulated: SdiA- 98.3 0.00059 1.3E-08 54.2 20.9 206 143-381 23-247 (248)
349 PF02897 Peptidase_S9_N: Proly 98.3 0.0021 4.6E-08 56.6 28.0 202 42-260 125-357 (414)
350 PF08596 Lgl_C: Lethal giant l 98.3 0.00098 2.1E-08 57.2 23.2 209 42-262 3-292 (395)
351 PF03178 CPSF_A: CPSF A subuni 98.3 0.0011 2.4E-08 56.0 23.3 218 107-381 2-262 (321)
352 PF08553 VID27: VID27 cytoplas 98.3 0.00086 1.9E-08 61.9 23.5 144 97-260 493-647 (794)
353 PF03178 CPSF_A: CPSF A subuni 98.3 0.0019 4.1E-08 54.6 25.3 177 63-261 3-203 (321)
354 PF04841 Vps16_N: Vps16, N-ter 98.2 0.003 6.5E-08 55.0 26.7 193 45-261 33-247 (410)
355 PF00780 CNH: CNH domain; Int 98.2 0.0026 5.7E-08 52.5 26.9 153 50-214 5-165 (275)
356 PRK13616 lipoprotein LpqB; Pro 98.1 0.00069 1.5E-08 61.4 19.4 198 41-256 350-564 (591)
357 smart00320 WD40 WD40 repeats. 98.1 1E-05 2.2E-10 43.6 5.1 39 344-382 2-40 (40)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0069 1.5E-07 54.7 30.0 195 52-265 69-338 (527)
359 KOG2444 WD40 repeat protein [G 98.0 1.7E-05 3.8E-10 59.7 6.6 150 198-391 32-184 (238)
360 COG3391 Uncharacterized conser 98.0 0.0071 1.5E-07 52.3 27.5 261 42-365 32-309 (381)
361 COG3204 Uncharacterized protei 98.0 0.0043 9.4E-08 49.3 20.3 172 36-214 81-263 (316)
362 COG3391 Uncharacterized conser 98.0 0.0092 2E-07 51.6 28.4 200 144-386 76-285 (381)
363 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0015 3.2E-08 43.8 13.9 100 144-255 2-109 (111)
364 PF04841 Vps16_N: Vps16, N-ter 98.0 0.01 2.3E-07 51.7 24.4 199 164-367 62-272 (410)
365 KOG4640 Anaphase-promoting com 97.9 6.9E-05 1.5E-09 64.9 9.2 80 39-122 19-99 (665)
366 PF02897 Peptidase_S9_N: Proly 97.9 0.012 2.7E-07 51.8 30.1 251 87-390 125-410 (414)
367 COG3386 Gluconolactonase [Carb 97.9 0.0095 2.1E-07 49.3 23.5 207 21-249 46-274 (307)
368 smart00320 WD40 WD40 repeats. 97.9 3.9E-05 8.4E-10 41.1 4.6 35 34-68 6-40 (40)
369 KOG2395 Protein involved in va 97.8 0.0017 3.7E-08 55.6 15.4 145 95-261 343-501 (644)
370 PRK13616 lipoprotein LpqB; Pro 97.8 0.003 6.5E-08 57.4 18.2 191 5-210 353-564 (591)
371 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0035 7.7E-08 42.1 14.4 67 186-260 2-71 (111)
372 KOG4640 Anaphase-promoting com 97.8 0.00015 3.2E-09 63.0 8.8 91 143-239 22-114 (665)
373 PF14727 PHTB1_N: PTHB1 N-term 97.8 0.022 4.7E-07 49.2 29.5 151 51-214 36-204 (418)
374 PF14870 PSII_BNR: Photosynthe 97.7 0.017 3.8E-07 47.5 26.4 278 40-381 16-301 (302)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.025 5.4E-07 48.7 26.1 34 229-262 306-339 (415)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.028 6.1E-07 48.4 25.2 97 90-192 6-117 (415)
377 COG3386 Gluconolactonase [Carb 97.6 0.026 5.7E-07 46.7 25.6 223 91-371 30-272 (307)
378 PF14583 Pectate_lyase22: Olig 97.6 0.029 6.3E-07 47.2 22.2 250 68-375 16-303 (386)
379 KOG1897 Damage-specific DNA bi 97.6 0.062 1.3E-06 50.3 31.2 63 323-387 839-901 (1096)
380 COG3490 Uncharacterized protei 97.6 0.022 4.9E-07 45.1 16.8 191 47-259 120-347 (366)
381 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.059 1.3E-06 48.8 26.0 158 53-214 121-333 (527)
382 KOG2079 Vacuolar assembly/sort 97.5 0.0024 5.3E-08 59.5 13.1 105 51-170 98-202 (1206)
383 PF10647 Gmad1: Lipoprotein Lp 97.5 0.032 6.9E-07 45.2 21.1 155 4-163 26-187 (253)
384 PF08553 VID27: VID27 cytoplas 97.5 0.0022 4.8E-08 59.3 12.7 149 194-383 491-646 (794)
385 KOG2395 Protein involved in va 97.5 0.0016 3.5E-08 55.7 10.7 146 198-384 348-500 (644)
386 COG5276 Uncharacterized conser 97.5 0.034 7.5E-07 44.3 28.2 206 34-266 35-247 (370)
387 KOG4441 Proteins containing BT 97.5 0.054 1.2E-06 49.5 20.6 191 49-261 282-500 (571)
388 PHA02713 hypothetical protein; 97.4 0.029 6.3E-07 51.2 19.0 32 323-354 512-545 (557)
389 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00065 1.4E-08 37.8 5.2 30 40-69 11-40 (47)
390 PHA02713 hypothetical protein; 97.4 0.012 2.6E-07 53.7 15.8 189 51-261 303-534 (557)
391 KOG2444 WD40 repeat protein [G 97.3 0.00034 7.4E-09 53.0 4.4 105 96-214 69-177 (238)
392 KOG4441 Proteins containing BT 97.3 0.08 1.7E-06 48.4 19.8 146 95-261 283-453 (571)
393 KOG2079 Vacuolar assembly/sort 97.3 0.024 5.3E-07 53.3 16.2 101 152-259 98-202 (1206)
394 PF10647 Gmad1: Lipoprotein Lp 97.3 0.071 1.5E-06 43.2 20.2 147 42-207 25-188 (253)
395 COG3204 Uncharacterized protei 97.3 0.067 1.5E-06 42.8 18.9 162 85-261 85-264 (316)
396 PF00780 CNH: CNH domain; Int 97.3 0.081 1.7E-06 43.7 25.6 192 40-261 35-256 (275)
397 KOG4499 Ca2+-binding protein R 97.2 0.048 1E-06 42.0 14.1 153 40-203 108-273 (310)
398 PF07995 GSDH: Glucose / Sorbo 97.1 0.14 2.9E-06 43.5 25.8 246 3-255 3-330 (331)
399 COG3490 Uncharacterized protei 97.1 0.1 2.2E-06 41.6 20.4 103 88-203 70-180 (366)
400 PF12894 Apc4_WD40: Anaphase-p 97.1 0.003 6.5E-08 35.2 5.5 30 86-115 12-41 (47)
401 PHA03098 kelch-like protein; P 96.9 0.15 3.2E-06 46.8 18.3 188 50-261 293-512 (534)
402 PF15390 DUF4613: Domain of un 96.8 0.077 1.7E-06 46.8 14.4 124 35-172 51-187 (671)
403 PF14727 PHTB1_N: PTHB1 N-term 96.8 0.3 6.5E-06 42.4 17.8 165 194-385 35-205 (418)
404 PF05694 SBP56: 56kDa selenium 96.8 0.29 6.2E-06 42.0 22.8 202 51-263 86-345 (461)
405 PF07995 GSDH: Glucose / Sorbo 96.8 0.29 6.2E-06 41.6 27.9 57 323-379 270-330 (331)
406 PRK10115 protease 2; Provision 96.7 0.59 1.3E-05 44.2 30.2 197 41-259 127-343 (686)
407 KOG3630 Nuclear pore complex, 96.6 0.051 1.1E-06 51.6 12.1 152 87-248 102-261 (1405)
408 PF14870 PSII_BNR: Photosynthe 96.5 0.36 7.9E-06 39.9 28.2 107 143-251 146-253 (302)
409 PHA03098 kelch-like protein; P 96.5 0.48 1E-05 43.5 18.3 103 96-214 294-414 (534)
410 TIGR03074 PQQ_membr_DH membran 96.5 0.82 1.8E-05 43.5 22.3 226 153-389 194-482 (764)
411 PF12234 Rav1p_C: RAVE protein 96.5 0.22 4.9E-06 45.4 15.2 110 88-213 32-155 (631)
412 KOG4499 Ca2+-binding protein R 96.5 0.29 6.2E-06 37.9 18.3 44 321-364 220-263 (310)
413 PF10313 DUF2415: Uncharacteri 96.3 0.018 4E-07 31.0 4.7 31 184-214 1-33 (43)
414 TIGR03074 PQQ_membr_DH membran 96.3 1.1 2.3E-05 42.8 23.6 127 52-180 194-353 (764)
415 KOG1897 Damage-specific DNA bi 96.3 1.1 2.3E-05 42.7 29.5 159 41-212 488-657 (1096)
416 KOG2377 Uncharacterized conser 96.2 0.16 3.5E-06 43.4 12.2 142 45-200 27-169 (657)
417 PF12234 Rav1p_C: RAVE protein 96.2 0.25 5.4E-06 45.1 14.2 123 41-170 30-155 (631)
418 PF10313 DUF2415: Uncharacteri 96.2 0.031 6.7E-07 30.1 5.2 32 41-72 1-35 (43)
419 PHA02790 Kelch-like protein; P 96.2 0.76 1.7E-05 41.4 17.3 184 51-261 271-471 (480)
420 KOG3630 Nuclear pore complex, 96.1 0.13 2.9E-06 49.0 12.1 115 143-261 102-229 (1405)
421 TIGR02604 Piru_Ver_Nterm putat 96.0 0.89 1.9E-05 39.4 23.0 100 3-104 15-142 (367)
422 PF15390 DUF4613: Domain of un 96.0 1.1 2.3E-05 40.1 17.6 154 41-213 20-185 (671)
423 KOG2280 Vacuolar assembly/sort 96.0 1.2 2.7E-05 40.9 17.0 193 162-365 63-270 (829)
424 TIGR02604 Piru_Ver_Nterm putat 96.0 0.45 9.8E-06 41.2 14.5 155 41-203 14-202 (367)
425 PF08728 CRT10: CRT10; InterP 96.0 0.97 2.1E-05 42.0 16.7 161 52-213 49-245 (717)
426 PF05096 Glu_cyclase_2: Glutam 95.9 0.71 1.5E-05 37.1 22.8 183 41-250 45-250 (264)
427 PRK10115 protease 2; Provision 95.7 2.1 4.4E-05 40.7 31.1 113 86-214 127-255 (686)
428 KOG2377 Uncharacterized conser 95.7 0.48 1E-05 40.7 12.5 100 143-248 68-171 (657)
429 COG5167 VID27 Protein involved 95.2 2 4.4E-05 37.7 15.4 146 93-261 475-633 (776)
430 KOG1916 Nuclear protein, conta 95.2 0.045 9.7E-07 50.7 5.6 183 162-383 110-322 (1283)
431 COG4257 Vgb Streptogramin lyas 95.1 1.4 3E-05 35.4 19.6 228 4-261 64-306 (353)
432 KOG2247 WD40 repeat-containing 95.1 0.0035 7.6E-08 53.3 -1.3 140 44-204 38-178 (615)
433 PF05694 SBP56: 56kDa selenium 95.0 2.1 4.6E-05 37.1 19.2 157 46-215 135-343 (461)
434 PF14761 HPS3_N: Hermansky-Pud 94.9 1.3 2.9E-05 34.2 15.6 144 98-259 29-213 (215)
435 PHA02790 Kelch-like protein; P 94.8 3 6.5E-05 37.7 17.9 60 152-214 318-384 (480)
436 KOG2280 Vacuolar assembly/sort 94.8 3.4 7.4E-05 38.3 19.0 180 61-261 63-247 (829)
437 PF10168 Nup88: Nuclear pore c 94.8 3.9 8.5E-05 38.8 24.1 84 85-173 84-181 (717)
438 PF08728 CRT10: CRT10; InterP 94.7 3.7 8.1E-05 38.4 17.5 115 143-259 102-245 (717)
439 PF10168 Nup88: Nuclear pore c 94.6 4.2 9E-05 38.6 24.1 94 141-262 84-181 (717)
440 PF05096 Glu_cyclase_2: Glutam 94.6 2 4.2E-05 34.6 23.0 184 144-372 47-249 (264)
441 KOG1900 Nuclear pore complex, 94.6 1 2.2E-05 44.2 12.8 158 45-214 83-272 (1311)
442 KOG1983 Tomosyn and related SN 94.3 1.1 2.4E-05 44.1 12.8 32 143-174 37-68 (993)
443 PRK13684 Ycf48-like protein; P 94.3 3 6.5E-05 35.6 24.2 150 86-259 173-330 (334)
444 PF14761 HPS3_N: Hermansky-Pud 94.2 2 4.3E-05 33.3 13.4 153 53-213 29-213 (215)
445 PF07569 Hira: TUP1-like enhan 94.2 0.4 8.7E-06 37.8 8.3 69 48-117 18-97 (219)
446 PF07569 Hira: TUP1-like enhan 94.2 0.45 9.7E-06 37.5 8.5 80 93-174 18-98 (219)
447 PRK13684 Ycf48-like protein; P 94.2 3.1 6.8E-05 35.5 27.9 278 40-383 45-330 (334)
448 TIGR03118 PEPCTERM_chp_1 conse 94.1 2.8 6.1E-05 34.4 24.1 204 42-261 24-280 (336)
449 COG5167 VID27 Protein involved 93.8 2.4 5.1E-05 37.3 12.3 62 323-385 572-633 (776)
450 PF13449 Phytase-like: Esteras 93.8 3.8 8.3E-05 34.8 17.1 119 40-161 19-166 (326)
451 KOG2247 WD40 repeat-containing 93.7 0.011 2.4E-07 50.4 -1.2 145 185-377 36-181 (615)
452 KOG1916 Nuclear protein, conta 93.6 0.18 3.8E-06 47.0 5.8 190 62-265 111-328 (1283)
453 COG4590 ABC-type uncharacteriz 93.5 0.15 3.3E-06 43.5 4.8 162 86-263 221-389 (733)
454 KOG1983 Tomosyn and related SN 93.2 2.8 6.2E-05 41.4 13.5 34 38-71 33-66 (993)
455 PF10214 Rrn6: RNA polymerase 93.2 8.7 0.00019 37.2 22.5 173 38-214 77-276 (765)
456 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.73 1.6E-05 24.8 5.9 40 322-362 1-41 (42)
457 COG4590 ABC-type uncharacteriz 92.8 0.85 1.8E-05 39.2 8.2 166 36-214 216-386 (733)
458 PF12657 TFIIIC_delta: Transcr 92.7 1.1 2.3E-05 33.9 8.1 31 87-117 87-123 (173)
459 PRK14131 N-acetylneuraminic ac 92.3 7.2 0.00016 34.0 20.5 40 163-204 189-230 (376)
460 KOG4460 Nuclear pore complex, 92.2 8 0.00017 34.4 13.2 129 53-185 53-212 (741)
461 PRK13615 lipoprotein LpqB; Pro 92.1 9.6 0.00021 35.0 19.7 158 4-171 336-502 (557)
462 TIGR02276 beta_rpt_yvtn 40-res 92.0 1 2.2E-05 24.2 5.5 40 151-191 1-41 (42)
463 TIGR03118 PEPCTERM_chp_1 conse 91.8 6.4 0.00014 32.4 23.9 120 87-213 24-169 (336)
464 PF07676 PD40: WD40-like Beta 91.5 1 2.2E-05 23.8 5.0 32 36-67 4-38 (39)
465 PF10395 Utp8: Utp8 family; I 91.2 13 0.00027 34.7 16.1 160 40-214 129-305 (670)
466 PF12657 TFIIIC_delta: Transcr 91.2 3.5 7.6E-05 31.2 9.4 31 231-261 86-122 (173)
467 PRK13613 lipoprotein LpqB; Pro 90.8 14 0.0003 34.4 19.8 192 42-254 364-576 (599)
468 PF11715 Nup160: Nucleoporin N 90.8 2.3 5E-05 39.3 9.7 71 50-120 156-253 (547)
469 PF08801 Nucleoporin_N: Nup133 90.6 12 0.00026 33.3 16.0 31 355-385 190-220 (422)
470 TIGR03548 mutarot_permut cycli 90.6 9.9 0.00021 32.3 20.0 105 152-261 72-195 (323)
471 PF13449 Phytase-like: Esteras 90.2 11 0.00023 32.2 16.4 158 87-247 21-231 (326)
472 COG3823 Glutamine cyclotransfe 90.1 7.3 0.00016 30.0 15.2 101 96-214 55-158 (262)
473 COG5290 IkappaB kinase complex 89.9 16 0.00034 34.6 13.4 93 144-243 249-349 (1243)
474 PF02333 Phytase: Phytase; In 89.6 13 0.00028 32.2 21.9 199 50-261 66-291 (381)
475 PF07250 Glyoxal_oxid_N: Glyox 89.5 5.9 0.00013 31.8 9.6 136 109-262 48-199 (243)
476 smart00036 CNH Domain found in 89.3 12 0.00026 31.4 24.5 61 96-171 12-73 (302)
477 COG5290 IkappaB kinase complex 89.2 20 0.00044 33.9 14.2 30 85-114 112-141 (1243)
478 PF12768 Rax2: Cortical protei 89.1 12 0.00025 31.0 12.8 92 106-212 15-121 (281)
479 PF14781 BBS2_N: Ciliary BBSom 89.1 6.3 0.00014 27.9 12.3 107 147-261 4-126 (136)
480 KOG1900 Nuclear pore complex, 88.6 6.2 0.00014 39.2 10.6 155 15-172 94-273 (1311)
481 TIGR03548 mutarot_permut cycli 88.6 14 0.00031 31.4 21.2 61 152-214 123-194 (323)
482 PRK14131 N-acetylneuraminic ac 88.4 16 0.00035 31.9 19.1 53 152-205 84-149 (376)
483 PF08801 Nucleoporin_N: Nup133 88.2 18 0.0004 32.2 13.6 31 231-261 190-220 (422)
484 TIGR03606 non_repeat_PQQ dehyd 88.0 19 0.00041 32.2 15.1 62 36-97 25-90 (454)
485 PF12768 Rax2: Cortical protei 87.8 14 0.00031 30.5 14.2 118 62-192 16-145 (281)
486 PF11715 Nup160: Nucleoporin N 87.8 3.2 7E-05 38.4 8.3 85 95-179 156-256 (547)
487 PF14781 BBS2_N: Ciliary BBSom 87.7 8 0.00017 27.4 12.8 114 45-178 3-132 (136)
488 smart00564 PQQ beta-propeller 87.6 1.9 4.2E-05 21.5 4.1 26 325-350 7-32 (33)
489 PF07676 PD40: WD40-like Beta 87.6 2.8 6E-05 22.1 5.2 30 352-381 6-38 (39)
490 PRK05560 DNA gyrase subunit A; 87.4 30 0.00066 33.8 21.8 211 42-261 538-773 (805)
491 COG5276 Uncharacterized conser 86.9 16 0.00034 30.0 26.6 189 7-214 92-285 (370)
492 PF07250 Glyoxal_oxid_N: Glyox 86.8 15 0.00032 29.6 12.3 86 165-251 48-138 (243)
493 PLN02193 nitrile-specifier pro 86.5 25 0.00054 31.9 17.8 194 51-261 175-411 (470)
494 PRK13615 lipoprotein LpqB; Pro 86.0 28 0.00062 32.1 20.0 150 44-213 337-501 (557)
495 TIGR03547 muta_rot_YjhT mutatr 85.8 22 0.00048 30.6 20.0 41 163-205 168-210 (346)
496 KOG3616 Selective LIM binding 85.7 16 0.00035 34.2 11.0 69 40-114 14-82 (1636)
497 PF11635 Med16: Mediator compl 85.7 36 0.00079 33.0 18.6 36 230-265 259-294 (753)
498 PLN02153 epithiospecifier prot 85.1 24 0.00051 30.4 19.2 66 51-119 32-113 (341)
499 PF11635 Med16: Mediator compl 85.0 39 0.00085 32.8 21.2 58 322-379 269-345 (753)
500 PF01011 PQQ: PQQ enzyme repea 84.9 3.5 7.6E-05 21.6 4.3 27 326-352 2-28 (38)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-58 Score=354.27 Aligned_cols=318 Identities=22% Similarity=0.333 Sum_probs=283.5
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
-|++|||+|+.+++++.+...++|+... .++.++|...|.|++|+|||+.||+|+.||+|++||..+++++.. ..
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l 196 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--AL 196 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cc
Confidence 4789999999999999999999988654 367889999999999999999999999999999999999877664 45
Q ss_pred ccceeeEEEEEeCC-----CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 82 KALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 82 ~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
.+|...|++++|.| ..++||+++.||.++|||+..+.. +..+..| ..+|+|+.|--+| +|
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~--~~~lsgH------------T~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--VRTLSGH------------TASVTCVRWGGEG-LI 261 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--EEEeccC------------ccceEEEEEcCCc-eE
Confidence 67888999999976 678999999999999999987765 3344444 4489999998665 89
Q ss_pred EEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec----------C-------------------------CCCEEEE
Q 015371 157 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD----------E-------------------------TGHLIFS 201 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~----------~-------------------------~~~~l~~ 201 (408)
++|+.|++|++|+...|.+...+++|...|+.|+.+. + .+..+++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 9999999999999999999999999999999998871 1 1235999
Q ss_pred ecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccccee
Q 015371 202 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 281 (408)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 281 (408)
|+.|.++.+|+.. ...+++....+|..-|+.+.|+||++++++++.|..|++||.++
T Consensus 342 gsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-------------------- 398 (480)
T KOG0271|consen 342 GSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-------------------- 398 (480)
T ss_pred ecCCceEEEeccc---ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC--------------------
Confidence 9999999999963 46678889999999999999999999999999999999999998
Q ss_pred ecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeee
Q 015371 282 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 361 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (408)
++.+.+|.+|- ..++..+||.|.++|++|+.|.++++||+++.+....+.+|.+.|.++.
T Consensus 399 --------------Gk~lasfRGHv------~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 399 --------------GKFLASFRGHV------AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD 458 (480)
T ss_pred --------------cchhhhhhhcc------ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence 67788899887 4455668999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEeecCCCcEEEEe
Q 015371 362 WHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 362 ~~~~~~~l~s~~~dg~v~iw~ 382 (408)
|+|||..+++|+.|..+++|.
T Consensus 459 wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceeecCCCceEEEeec
Confidence 999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-56 Score=343.53 Aligned_cols=294 Identities=23% Similarity=0.348 Sum_probs=258.3
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.||.++|.|++|+|+|..||+|+.|.++|+||+.+..... ...+|..-|.|++|+|||+.||+|+.||+|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 3577999999999999999999999999999999999875554 4567777999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-----CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-----DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 188 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 188 (408)
..+++.. ...+.. |...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|+.+|+|
T Consensus 186 pktg~~~-g~~l~g------------H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 186 PKTGQQI-GRALRG------------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC 252 (480)
T ss_pred CCCCCcc-cccccC------------cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEE
Confidence 9888753 233333 444899999976 5679999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec-----------CCCC--------------
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-----------RDGR-------------- 243 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-------------- 243 (408)
+.|- ...+|++|+.|++|++|+. ..+.....+.+|...|+.++.+ |.++
T Consensus 253 vrwG--G~gliySgS~DrtIkvw~a----~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 253 VRWG--GEGLIYSGSQDRTIKVWRA----LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred EEEc--CCceEEecCCCceEEEEEc----cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 9995 5679999999999999995 4788999999999999999876 2233
Q ss_pred -----------eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE
Q 015371 244 -----------YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 312 (408)
Q Consensus 244 -----------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
.+++|+.|.++.+|+.... .+++..+.+|....
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~---------------------------------kkpi~rmtgHq~lV--- 370 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKS---------------------------------KKPITRMTGHQALV--- 370 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEeccccc---------------------------------ccchhhhhchhhhe---
Confidence 4999999999999997652 35677778887443
Q ss_pred EEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 313 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 313 ~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
....||||+++||+++.|.+|++||.++|+.+.+|++|-++|+.++|+.|.++|++||.|.++++|++.+.+.
T Consensus 371 ---n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 371 ---NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred ---eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 4447999999999999999999999999999999999999999999999999999999999999999987654
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-51 Score=306.22 Aligned_cols=294 Identities=21% Similarity=0.343 Sum_probs=259.0
Q ss_pred cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.....|+||.++|.++.|++|+++|++++.||.+.|||.-+..+.+.+..... .|..++|+|.|+++|+|+-|+...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~---WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---WVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce---eEEEEEECCCCCeEEecCcCceeE
Confidence 33478999999999999999999999999999999999988766665544333 799999999999999999999999
Q ss_pred EEECCCCce----eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc
Q 015371 111 IVDVGSSAR----ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 186 (408)
Q Consensus 111 ~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 186 (408)
||++.+.+. .....+.. |..-+.|+.|.+|+ .|++++.|.+..+||+++++.+..+.+|.+.|
T Consensus 123 iy~ls~~d~~g~~~v~r~l~g------------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAG------------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EEecccccccccceeeeeecC------------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 999985522 22233334 44479999999865 69999999999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
.+++++|.+++.+++|+-|+..++||+| .+...+.+.+|...|+++.|.|+|.-|++|+.|++.++||+|.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa----- 260 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA----- 260 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC-----
Confidence 9999996699999999999999999988 7799999999999999999999999999999999999999998
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
.+.+..+..... ...+.+++||..|++|++|..|..+.+||.-.++.
T Consensus 261 -----------------------------D~~~a~ys~~~~----~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 261 -----------------------------DQELAVYSHDSI----ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred -----------------------------CcEEeeeccCcc----cCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence 455666654332 23455667888899999999999999999999999
Q ss_pred eEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 347 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
+..+.+|.+.|+++..+|||..++|||.|..++||.
T Consensus 308 vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-52 Score=324.79 Aligned_cols=283 Identities=26% Similarity=0.345 Sum_probs=256.1
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC--CceEEEeecCcEEEEEECC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~~~ 115 (408)
|-+.+|..+.||+|++.||||+-+|.++||+..+...+. ...+|...|.++.|+|. +..+|+|+.||++++|+++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 567899999999999999999999999999998874444 45677779999999996 6789999999999999998
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
+... +..+..| ...|..++|+|+|++|++++.|.+-++||+++++.+....+|...|.+++|. ++
T Consensus 250 ~e~~--l~~l~gH------------~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~D 314 (459)
T KOG0272|consen 250 QETP--LQDLEGH------------LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-PD 314 (459)
T ss_pred CCcc--hhhhhcc------------hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec-CC
Confidence 7643 3334443 4479999999999999999999999999999999999899999999999999 99
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
|.++++|+.|..-+|||+| ++.++..+.+|..+|.+++|+|+|..|++|+.|++++|||++.
T Consensus 315 GSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-------------- 376 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-------------- 376 (459)
T ss_pred CceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc--------------
Confidence 9999999999999999988 8999999999999999999999999999999999999999998
Q ss_pred cccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEeeCCCeEEEEECCCCceeEEEccCC
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 354 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (408)
...+..+.+|...+..+ .|+| .|.+|++++.|+++++|...+..+++.+.+|.
T Consensus 377 --------------------r~~ly~ipAH~nlVS~V------k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 377 --------------------RSELYTIPAHSNLVSQV------KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred --------------------cccceecccccchhhhe------EecccCCeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence 45577888888544433 4565 68999999999999999999999999999999
Q ss_pred CCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 355 APVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
+.|.+++.++++++++|++.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-48 Score=303.21 Aligned_cols=273 Identities=23% Similarity=0.364 Sum_probs=241.0
Q ss_pred eeEecCCccEEEeecCceEEEEEEe---cCceeeecccCceeEEEEcCC--CCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPV---NGPWKVDGMNSRVYTSQFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~---~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
...||+|+..+++++-.....+|.. +..++|.||.+.|.++.|+|. +..||||+.||++++|++++...+. .
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~ 256 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---D 256 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---h
Confidence 4678999999999776666555554 445789999999999999997 5689999999999999998864444 4
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..+|...|..++|+|+|++|++++.|.+-++||+.++.... .. ++|..+|.+++|.+||.++++|+
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--~Q------------EGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL--LQ------------EGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH--hh------------cccccccceeEecCCCceeeccC
Confidence 56677799999999999999999999999999999876522 22 34555899999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
.|..-+|||++++.++..+.+|..+|.+++|+ |+|..|++|+.|++++|||+| ....+..+.+|.+-|+.+.|+|
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecc
Confidence 99999999999999999999999999999999 999999999999999999998 5666899999999999999998
Q ss_pred -CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 241 -DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 241 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
.|.+|++++.|+++++|..++ ..++..+.+|.. -+++.+
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~----------------------------------~~~~ksLaGHe~------kV~s~D 437 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRT----------------------------------WSPLKSLAGHEG------KVISLD 437 (459)
T ss_pred cCCeEEEEcccCcceeeecCCC----------------------------------cccchhhcCCcc------ceEEEE
Confidence 788999999999999999888 678889999984 445668
Q ss_pred ccCCCcEEEEeeCCCeEEEEE
Q 015371 320 YSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd 340 (408)
+++|+.+|++++.|.++++|.
T Consensus 438 is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eccCCceEEEeccCceeeecc
Confidence 999999999999999999995
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-45 Score=268.29 Aligned_cols=283 Identities=20% Similarity=0.308 Sum_probs=237.7
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
.-+||+++.|-+||+|...++.+...+..... .|+.+...|+++.||+++ .-.||+||+.+........+..+..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~ds---qVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDS---QVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCcc---ceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCC-
Confidence 35799999999999999999988887665544 699999999999999887 5689999999988877777777644
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 211 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iw 211 (408)
.|+.+.|..+|+.+++|+.||+++|||++...+.+.++ |..+|+++..+ |+..-|++|..+|.|++|
T Consensus 85 -----------NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh-pnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 85 -----------NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH-PNQTELISGDQSGNIRVW 151 (311)
T ss_pred -----------ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEec-CCcceEEeecCCCcEEEE
Confidence 69999999999999999999999999999977666665 77999999999 788889999999999999
Q ss_pred eccccccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeeccccccee
Q 015371 212 DRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 290 (408)
Q Consensus 212 d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (408)
|++. ..+... .......|.++...|||++++.+...|..++|++-.......
T Consensus 152 Dl~~----~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~----------------------- 204 (311)
T KOG0315|consen 152 DLGE----NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE----------------------- 204 (311)
T ss_pred EccC----CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-----------------------
Confidence 9862 222222 233457899999999999999999999999999977322222
Q ss_pred eccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC-ceeEEEccCCCCeeeeeEeCCCCeE
Q 015371 291 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYPML 369 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l 369 (408)
..++..++.|.. ...++ .+|||+++||+++.|.+++||+..+. +....+++|...+++++||.||+||
T Consensus 205 -----l~P~~k~~ah~~--~il~C----~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 205 -----LEPVHKFQAHNG--HILRC----LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred -----ceEhhheecccc--eEEEE----EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 255666777773 23333 47788999999999999999999887 6677889999999999999999999
Q ss_pred EeecCCCcEEEEeeCCCCCCC
Q 015371 370 ISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 370 ~s~~~dg~v~iw~~~~~~~~~ 390 (408)
+||+.|+.+++|+++.+++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred EecCCCCceeecccccCceee
Confidence 999999999999999987543
No 7
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-44 Score=265.22 Aligned_cols=293 Identities=21% Similarity=0.333 Sum_probs=240.8
Q ss_pred CceeeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeecCcEE
Q 015371 32 GPWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 109 (408)
..+.+.+|+++|..++|+|- |..||+|+.|+.|++|+...+ .-..+.....+|...|.+++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 34678899999999999998 889999999999999998842 2222333445788899999999999999999999999
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC---cceeeecCcCCCc
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---KCSLRIPAHKSDV 186 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v 186 (408)
.||.-..++.+....+.+|.. .|.+++|+++|++||+++.|..|.||.+..+ ++...++.|...|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEn------------EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHEN------------EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EEeecCCCceeEEeeeecccc------------ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999998888777777766655 8999999999999999999999999998743 5677889999999
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
..+.|+ |...+|++++.|.+|++|+-.. ...-.+..++.+|...|.+++|++.|..|++++.|++++||-....-
T Consensus 154 K~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--- 228 (312)
T KOG0645|consen 154 KHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--- 228 (312)
T ss_pred cEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence 999999 8889999999999999998542 33567789999999999999999999999999999999999865310
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC--
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-- 344 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-- 344 (408)
-..|. +..+.+.|. ...|++++.|+.|++|.-...
T Consensus 229 -----------------------------------~~~~s------r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 229 -----------------------------------SGMHS------RALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred -----------------------------------chhcc------cceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 00111 222333343 457999999999999986542
Q ss_pred ----ceeE-EEccCCCCeeeeeEeCC-CCeEEeecCCCcEEEEeeC
Q 015371 345 ----AQVA-KLDFHNAPVRDCCWHPI-YPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 345 ----~~~~-~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~~~ 384 (408)
+.+. .-..|...|++++|+|. .++|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1121 23568889999999995 5699999999999999975
No 8
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-46 Score=289.58 Aligned_cols=304 Identities=24% Similarity=0.369 Sum_probs=256.8
Q ss_pred EEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec
Q 015371 26 RYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI 105 (408)
Q Consensus 26 ~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 105 (408)
.-.|.+..+.+..|++.|+-+.||++|+|||+++.|.+..+|.+.....+.-.....+|..+|..+.||||.++|++++.
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 34566677889999999999999999999999999999999998877665555667788889999999999999999999
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC-cCC
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-HKS 184 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~ 184 (408)
+..+.+||+.++.......-. +...+.+.+|.|||..+++|+.|+.+..||+... .....++ ...
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~-------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~ 355 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSG-------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDP 355 (519)
T ss_pred hHheeeccCCcchhhhhcccC-------------cCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccc
Confidence 999999999998764333221 2236999999999999999999999999999654 3444443 235
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
.|.+++.+ +|++++++...|..|++++.. ..... .+.....+|+++..+.+++++++.-.+..+++||+..
T Consensus 356 ~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr-~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e--- 426 (519)
T KOG0293|consen 356 KVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDR-GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE--- 426 (519)
T ss_pred eeEEEEEc-CCCcEEEEEecccceeeechh----hhhhh-ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecch---
Confidence 68999999 999999999999999999964 22222 2334567899999999999999999999999999986
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
...+..+.+|......++.+|.-. +..++++|++|+.|+||+..++
T Consensus 427 -------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 427 -------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred -------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEccCC
Confidence 466778888888777777766543 5689999999999999999999
Q ss_pred ceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCC
Q 015371 345 AQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~ 386 (408)
+++.++.+|...|++++|+|..+ ++|+||.||+|+||.....
T Consensus 473 kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 473 KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999776 8999999999999987654
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-44 Score=267.47 Aligned_cols=290 Identities=23% Similarity=0.341 Sum_probs=236.8
Q ss_pred eeeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeEE--EecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 34 WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
-.+.+|++.|+.++..+. .+.+++++.|.++.+|++....... ......+|...|..+..++||++.++++.|+.++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 468899999999999987 5788899999999999987652211 1223456777999999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC--cCCCceE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDVNT 188 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~ 188 (408)
+||+.+++. ...+..|.. .|.+++|++|.+.+++|+.|.+|.+|+.... +..++.. +...|+|
T Consensus 89 lWDl~~g~~--t~~f~GH~~------------dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 89 LWDLATGES--TRRFVGHTK------------DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSC 153 (315)
T ss_pred EEEecCCcE--EEEEEecCC------------ceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEE
Confidence 999999854 444555544 7999999999999999999999999998754 4444433 3789999
Q ss_pred EEEecCC-CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccc
Q 015371 189 VCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 189 l~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
+.|+|.. ..+|++++.|++|++||++ ..+....+.+|.+.++.+.++|||.+.++|+.||.+.+||++.
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~------ 223 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE------ 223 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC------
Confidence 9999543 7899999999999999976 7888889999999999999999999999999999999999998
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
.+.+..+... ..+.+.+|+|+.-.|+.+.. ..|+|||+.++.++
T Consensus 224 ----------------------------~k~lysl~a~-------~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 224 ----------------------------GKNLYSLEAF-------DIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVV 267 (315)
T ss_pred ----------------------------CceeEeccCC-------CeEeeEEecCCceeEeeccC-CceEEEeccchhhh
Confidence 3444444433 23455578887666666554 45999999999888
Q ss_pred EEEccC---------CCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 348 AKLDFH---------NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 348 ~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
..++.. .-...+++|++||..|++|-.|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 776421 2235678999999999999999999999875
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-44 Score=298.67 Aligned_cols=336 Identities=18% Similarity=0.332 Sum_probs=268.2
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC----------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG----------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
.|+.|||||++.+.+....+.-+-.+.. ..+..||-..|.++.|+.|.++|++|+.|.+++||.++..+.
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 4799999999988766555433222211 135669999999999999999999999999999999987655
Q ss_pred EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC-----------------------ceeeeee--eeeee
Q 015371 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-----------------------ARESLAN--VTIHK 129 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~-----------------------~~~~~~~--~~~~~ 129 (408)
. ......+|...|.+.-|..+...+++.+.||.+.+|..... +. .... +...+
T Consensus 180 ~-~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee-k~~~~~~~k~~ 257 (893)
T KOG0291|consen 180 L-FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEE-KTHKIFWYKTK 257 (893)
T ss_pred c-ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchh-hhcceEEEEEE
Confidence 3 34456788889999999999999999999999999987611 00 0000 00000
Q ss_pred e------------eeeecCC--------------------------CCCccceEEEEEcCCCCEEEEEecC-CeEEEEEC
Q 015371 130 G------------LDFSADG--------------------------DEDEFGIFSVKFSTDGQELVAAGSD-NFIYVYDL 170 (408)
Q Consensus 130 ~------------~~~~~~~--------------------------~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~ 170 (408)
. ..+.... .-...+|..+.|+..|..|+.|+.. |.+.||+.
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 0 0000000 0112367888888889999988764 79999999
Q ss_pred CCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec
Q 015371 171 QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK 250 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 250 (408)
++...+.+.++|...+++++++ ||++++++|++||.|+|||.+ .+-+..++..|+..|+.+.|+..|+.+++.+-
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred eccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceEEEEEEecCCEEEEeec
Confidence 9999999999999999999999 999999999999999999964 78899999999999999999999999999999
Q ss_pred CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe
Q 015371 251 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 330 (408)
Q Consensus 251 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 330 (408)
||+|+.||+... +..+++...... ...+++..|.|.++++|
T Consensus 413 DGtVRAwDlkRY----------------------------------rNfRTft~P~p~-----QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 413 DGTVRAWDLKRY----------------------------------RNFRTFTSPEPI-----QFSCVAVDPSGELVCAG 453 (893)
T ss_pred CCeEEeeeeccc----------------------------------ceeeeecCCCce-----eeeEEEEcCCCCEEEee
Confidence 999999999873 334444433311 11233566679999999
Q ss_pred eCCCe-EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 331 SSDNS-VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 331 ~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
+.|.. |++|++++|+.+..+.+|+++|.+++|+|++..|+++|.|.+|++||+-..
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 99864 999999999999999999999999999999999999999999999999765
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.2e-45 Score=272.61 Aligned_cols=293 Identities=26% Similarity=0.397 Sum_probs=248.8
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.||++.|+.+.|+|+|.+||+|+.|..|.+|+.....+ ......+|.++|..+.|.+|++.|++++.|.+++.||
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 45779999999999999999999999999999999755422 2334558889999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
.++++. ....+.+.. -+..+.-+.-|. .+.+++.|+++++||+++.+.++++. ...+++++.|.
T Consensus 119 ~~tG~~--~rk~k~h~~------------~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~ 183 (338)
T KOG0265|consen 119 AETGKR--IRKHKGHTS------------FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFK 183 (338)
T ss_pred ccccee--eehhccccc------------eeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEec
Confidence 999976 344444444 477777544444 56677889999999999998888776 46789999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
..+..+++|+-|+.|++||+| .......+.+|.++|+.+..+|+|.++.+-+.|.++++||++...
T Consensus 184 -d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~--------- 249 (338)
T KOG0265|consen 184 -DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA--------- 249 (338)
T ss_pred -ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC---------
Confidence 888999999999999999987 788899999999999999999999999999999999999998733
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccc--eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV--LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
+..+++..+.++.. ......+ +|||+++.+.+|+.|..+++||......+..+
T Consensus 250 ---------------------p~~R~v~if~g~~hnfeknlL~c----swsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 250 ---------------------PSQRCVKIFQGHIHNFEKNLLKC----SWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred ---------------------CCCceEEEeecchhhhhhhccee----eccCCCCccccccccceEEEeecccccEEEEc
Confidence 23455677766543 2233333 57788999999999999999999988999999
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
.+|.+.|++++|+|..++|.+++.|.+|++=+
T Consensus 305 pGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 305 PGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999999999999998743
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7e-44 Score=283.35 Aligned_cols=297 Identities=21% Similarity=0.289 Sum_probs=245.9
Q ss_pred eeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEEEe-c----------ccccceeeEEEEEeCCCCceEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKD-I----------ETKALRWTITDTSLSPDQRFLVY 102 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~-~----------~~~~~~~~v~~~~~~~~~~~l~~ 102 (408)
++..|+.+|.+++|+|-.. .|++|+.|-+.++|++......... . ........|++++|+.+|..||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 4445999999999999766 8999999999999998752111110 0 11112346999999999999999
Q ss_pred eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCc
Q 015371 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH 182 (408)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 182 (408)
|+.||.+++|+...... ..+..|++ ||.++.|+.+|.+|++++.|+++.+||..+++..+.+.-|
T Consensus 253 G~~~G~~riw~~~G~l~---~tl~~Hkg------------PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNLI---STLGQHKG------------PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred eecCcEEEEEecCchhh---hhhhccCC------------ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 99999999999876543 33444544 8999999999999999999999999999999999999989
Q ss_pred CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 183 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
..+-..+.|- +..-|++++.|+.|+++.+. ...++.++.+|.+.|.++.|.|.+.+|++++.|++++||....
T Consensus 318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~- 390 (524)
T KOG0273|consen 318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ- 390 (524)
T ss_pred cCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-
Confidence 9888889996 56679999999999999964 7888999999999999999999999999999999999999876
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc----cc-CCCcEEEEeeCCCeEE
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE----YS-TAQKYIYTGSSDNSVY 337 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~s-~~~~~l~~~~~dg~i~ 337 (408)
......+..|......+ .|+|. .. ..+..+++++.|++|+
T Consensus 391 ---------------------------------~~~~~~l~~Hskei~t~--~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 391 ---------------------------------SNSVHDLQAHSKEIYTI--KWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred ---------------------------------CcchhhhhhhccceeeE--eecCCCCccCCCcCCceEEEeecCCeEE
Confidence 34455666666322221 22221 11 1356899999999999
Q ss_pred EEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 338 IYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 338 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+||+..+.+++++..|..+|++++|+|+|+++|+|+.||.|.+|+.+.++.
T Consensus 436 lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 436 LWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 999999999999999999999999999999999999999999999987654
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-43 Score=279.95 Aligned_cols=315 Identities=19% Similarity=0.287 Sum_probs=266.0
Q ss_pred eeeEecCCcc-EEEeecCceEEEEEEecC-------cee------eecc----cCceeEEEEcCCCCeEEEEeCCCcEEE
Q 015371 5 REVNYSGRGR-FSAADSCHVLSRYLPVNG-------PWK------VDGM----NSRVYTSQFSNDGSFFVAASQESNIKV 66 (408)
Q Consensus 5 ~~~~~s~dg~-~~~~~~~~~~~~~~~~~~-------~~~------l~~h----~~~v~~~~~s~~~~~l~t~~~dg~i~i 66 (408)
-+.+|+|-.. .+++++.+...+.+.... ... +.++ +..|++++|+.+|.+||+|+.||.++|
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri 261 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI 261 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence 3567888655 677777676666665443 111 1122 357999999999999999999999999
Q ss_pred EEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEE
Q 015371 67 YNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS 146 (408)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (408)
|+.... .......|.++|.++.|+.+|.+|++++.|+++.+||..++.......+ +.. +-.+
T Consensus 262 w~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~--~s~------------~~lD 323 (524)
T KOG0273|consen 262 WNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF--HSA------------PALD 323 (524)
T ss_pred EecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee--ccC------------Cccc
Confidence 997654 2335667888999999999999999999999999999988877544443 322 4467
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee
Q 015371 147 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL 226 (408)
Q Consensus 147 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 226 (408)
+.|-.+. .+++++.|+.|+++.+....++.++.+|.++|.+|.|+ |.+.+|++++.|++++||... .......+
T Consensus 324 VdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~----~~~~~~~l 397 (524)
T KOG0273|consen 324 VDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMG----QSNSVHDL 397 (524)
T ss_pred eEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecC----CCcchhhh
Confidence 8887554 58899999999999999999999999999999999999 899999999999999999954 77788889
Q ss_pred ecccCCeEEEEecCCC---------CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCc
Q 015371 227 MGHLEGITFIDSRRDG---------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 297 (408)
Q Consensus 227 ~~~~~~i~~~~~~~~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
.+|...|..+.|+|.| ..+++++.|++|++||+.. +.
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~----------------------------------gv 443 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES----------------------------------GV 443 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC----------------------------------Cc
Confidence 9999999999999964 3689999999999999988 67
Q ss_pred ceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCc
Q 015371 298 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCN 377 (408)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 377 (408)
++..|..|.. .+++++|||+|+|+|+|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+|..|..+-.||.
T Consensus 444 ~i~~f~kH~~------pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 444 PIHTLMKHQE------PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred eeEeeccCCC------ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCC
Confidence 8888888884 456668999999999999999999999999999999985 566999999999999999999999
Q ss_pred EEEEeeC
Q 015371 378 IVRWEIP 384 (408)
Q Consensus 378 v~iw~~~ 384 (408)
+++-|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999875
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-44 Score=276.94 Aligned_cols=292 Identities=24% Similarity=0.350 Sum_probs=261.8
Q ss_pred cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
..++.+.||...|+.+-|+|+-..+++++.|++|++||..+++. .....+|...+.+++|+..|++|++++.|-.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 55678899999999999999999999999999999999999865 345678888899999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
+||.++. .........+ ...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..+.
T Consensus 176 LWd~~~~-~~c~ks~~gh------------~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 176 LWDFDTF-FRCIKSLIGH------------EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred heeHHHH-HHHHHHhcCc------------ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 9999764 2223333333 33799999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC---------------CCeEEEeecCCeEE
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---------------GRYFISNGKDQTTK 255 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~i~ 255 (408)
.+ .|+.++++++.|.++++|-+. ...+...+..|..+|.+++|.|. +.++.+++.|++|+
T Consensus 243 v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 243 VN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred ec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 99 999999999999999999964 77778889999999999999763 35899999999999
Q ss_pred EEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCe
Q 015371 256 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 335 (408)
Q Consensus 256 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 335 (408)
+||+.+ +.++.++.+|... +...+|+|.|+||+++.+|++
T Consensus 318 ~wdv~t----------------------------------g~cL~tL~ghdnw------Vr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 318 IWDVST----------------------------------GMCLFTLVGHDNW------VRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred EEeccC----------------------------------CeEEEEEecccce------eeeeEEcCCCeEEEEEecCCc
Confidence 999998 6888999999844 445589999999999999999
Q ss_pred EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 336 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+++||+++++++..+..|..-|++++|+.+..+++||+-|..+++|.-
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999974
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-44 Score=281.21 Aligned_cols=287 Identities=22% Similarity=0.358 Sum_probs=246.6
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCce
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (408)
+..|..+.|.|+|+.|++|+..|.+.+|+.. ..........|..+|+++.|++++.++++|..+|.|++|+..-...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~---~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc---eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 4679999999999999999999999999963 2334445678889999999999999999999999999999865443
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 199 (408)
+ .+..+. ...|.+++|+|+...+++++.||.|+|||....+....+.+|.-.|.+++|+ |...++
T Consensus 173 k---~~~ahh-----------~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kgLi 237 (464)
T KOG0284|consen 173 K---IIQAHH-----------AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKGLI 237 (464)
T ss_pred H---HhhHhh-----------hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Ccccee
Confidence 2 222222 2379999999999999999999999999999998888999999999999999 788899
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
++|+.|..|++||.| ++.++.++.+|...|..+.|+|++++|++++.|..++++|+++
T Consensus 238 asgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~------------------ 295 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT------------------ 295 (464)
T ss_pred EEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH------------------
Confidence 999999999999976 8999999999999999999999999999999999999999996
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE-ccCCCCee
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVR 358 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~ 358 (408)
.+.+..+++|..... ...|.|. ...+|.+|+.||.|..|.+...+++..+ .+|...|+
T Consensus 296 ----------------mkEl~~~r~Hkkdv~--~~~WhP~---~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iw 354 (464)
T KOG0284|consen 296 ----------------MKELFTYRGHKKDVT--SLTWHPL---NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIW 354 (464)
T ss_pred ----------------hHHHHHhhcchhhhe--eeccccc---cccceeeccCCCceEEEeccccccccCCCccccccee
Confidence 356777788874332 3344443 4678999999999999999866666666 57999999
Q ss_pred eeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 359 DCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 359 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
+++|+|-|.+|++|+.|.++++|.-....
T Consensus 355 sl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 355 SLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eeeccccceeEeecCCCcceeeeccCCCC
Confidence 99999999999999999999999865443
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-42 Score=250.91 Aligned_cols=293 Identities=18% Similarity=0.272 Sum_probs=245.9
Q ss_pred cEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEE
Q 015371 14 RFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (408)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~ 90 (408)
.++++.+.+...++|.... ..+++...+.|+.+.+.||++.||+++.- .||+||+.++... ......+|...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-PVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-ceeEEeccCCceEE
Confidence 5788899999889887554 34666667889999999999999999865 7999999987543 44556677779999
Q ss_pred EEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC
Q 015371 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 170 (408)
Q Consensus 91 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 170 (408)
+.|..+|+.+++|++||+++|||+........... ..+|+++..+|+...|++|..+|.|++||+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---------------~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---------------NSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccC---------------CCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 99999999999999999999999988554333322 227999999999999999999999999999
Q ss_pred CCCcceeee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccc--ccCCccceeeecccCCeEEEEecCCCCeEEE
Q 015371 171 QANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 171 ~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
.+..+...+ +....+|.++... +++.+++.+...|.+++|++-.. ...-.++..++.|.+.+..+.++||+++|++
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 888666555 4456789999999 99999999999999999997532 2334567778999999999999999999999
Q ss_pred eecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEE
Q 015371 248 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327 (408)
Q Consensus 248 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 327 (408)
++.|.+++||+.++. .+.-..+++|. +..|..+||.||.||
T Consensus 233 ~ssdktv~iwn~~~~---------------------------------~kle~~l~gh~------rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDF---------------------------------FKLELVLTGHQ------RWVWDCAFSADGEYL 273 (311)
T ss_pred ecCCceEEEEecCCc---------------------------------eeeEEEeecCC------ceEEeeeeccCccEE
Confidence 999999999999872 12234455665 678888999999999
Q ss_pred EEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEe
Q 015371 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 363 (408)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (408)
++|+.|+.+++||+..++.+..+.+|.....+++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999998888777654
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=285.29 Aligned_cols=339 Identities=17% Similarity=0.253 Sum_probs=256.3
Q ss_pred eeeEecCCccEEEeecCc----eEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 5 REVNYSGRGRFSAADSCH----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..++|+--|.+++-++.. .+|.+....-..+.+||...++|+++||||+++|||+.||.|+|||..++.++.++
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-- 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-- 388 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe--
Confidence 456677778888876543 34444433334577899999999999999999999999999999999999887765
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..|...|+.+.|+..++.+++++-||+|+.||+...+.-.....+... ...|++..|.|..+.+|+
T Consensus 389 -teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-------------QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 389 -TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-------------QFSCVAVDPSGELVCAGA 454 (893)
T ss_pred -ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce-------------eeeEEEEcCCCCEEEeec
Confidence 456668999999999999999999999999999876653333322221 478899999999998888
Q ss_pred cCC-eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 161 SDN-FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 161 ~dg-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
.|. .|++|++++|+.+-.+.+|++||.+++|+ +.++.|+++|.|.+|++||+- .....+.++ .+...+..++|+
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if---~s~~~vEtl-~i~sdvl~vsfr 529 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIF---SSSGTVETL-EIRSDVLAVSFR 529 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEee---ccCceeeeE-eeccceeEEEEc
Confidence 875 79999999999999999999999999999 899999999999999999973 233334444 367789999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
|+|+.|+++.-||.|.+||................. ........+.... ....+....++
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~------------------~gR~~~D~~ta~~--sa~~K~Ftti~ 589 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS------------------GGRKETDRITAEN--SAKGKTFTTIC 589 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhcc------------------ccccccceeehhh--cccCCceEEEE
Confidence 999999999999999999998754332221110000 0000001111110 11123455668
Q ss_pred ccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc-----------------------------------------------
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF----------------------------------------------- 352 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------------------- 352 (408)
+|+||.+|++|+....|.+||+.++-.++.++-
T Consensus 590 ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~ 669 (893)
T KOG0291|consen 590 YSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQR 669 (893)
T ss_pred EcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCcccc
Confidence 999999999999999999999987655444321
Q ss_pred ------C---CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 353 ------H---NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 353 ------~---~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
+ .-.|+++.|+|.|+.++.++..| +.||.+.+
T Consensus 670 gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 670 GDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred CCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence 0 11478899999999999998887 55777644
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-41 Score=270.94 Aligned_cols=343 Identities=18% Similarity=0.214 Sum_probs=260.3
Q ss_pred eEecCCccE-EEeecCceEEEEEEecCc---eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 7 VNYSGRGRF-SAADSCHVLSRYLPVNGP---WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 7 ~~~s~dg~~-~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
++|-|..-| +++++.+....++...+. ..++.|..-|.|+.|+|||.++|+++.||+|.+||=.+++.+..+....
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence 344443333 456666666666654332 2456899999999999999999999999999999999999988887788
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeee-----ee----------------ee--------e
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIH-----KG----------------LD--------F 133 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-----~~----------------~~--------~ 133 (408)
.|.+.|.+++|+||++.+++++.|.+++|||+.+.+.......... -+ +. .
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 9999999999999999999999999999999998765433322111 00 00 1
Q ss_pred ecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEe
Q 015371 134 SADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 212 (408)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd 212 (408)
.....+|...|+++..++++++|++|+.||.|.-|+..++..-... +.|...|.+++-+ . ...+++.+.|.++++.+
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~-~~~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-E-SGELFTIGWDDTLRVIS 390 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec-C-CCcEEEEecCCeEEEEe
Confidence 1112578889999999999999999999999999999988765444 7799999999987 3 34577888889999997
Q ss_pred ccccccCCc---------------------------cceeeecc--------cCCeEEEEecCCCCeEEEeecCCeEEEE
Q 015371 213 RRCFISKGR---------------------------ANGVLMGH--------LEGITFIDSRRDGRYFISNGKDQTTKLW 257 (408)
Q Consensus 213 ~~~~~~~~~---------------------------~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~iw 257 (408)
+........ .+..+..+ .-...+++++|+++.+++|+.|+.|++|
T Consensus 391 ~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 391 LKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred cccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEE
Confidence 631110000 00111111 1234678899999999999999999999
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEE
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 337 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 337 (408)
.+..... ........|.. .+..++||||+.|||+|...+.+.
T Consensus 471 sl~g~~l--------------------------------~ee~~~~~h~a------~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 471 SLSGDEL--------------------------------KEEAKLLEHRA------AITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred EecCCcc--------------------------------cceeeeecccC------CceEEEECCCCcEEEEeccCCcEE
Confidence 9887331 11223334443 334458999999999999999999
Q ss_pred EEECCCCceeE-EEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 338 IYDLVSGAQVA-KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 338 vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
+||+.+.+... .+..|...|.+++|+|+..++|||+.|..|.||++....+.
T Consensus 513 ~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 513 LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 99999887633 33459999999999999999999999999999999876554
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.8e-42 Score=297.34 Aligned_cols=294 Identities=32% Similarity=0.534 Sum_probs=253.2
Q ss_pred eeecc-cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 35 KVDGM-NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 35 ~l~~h-~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.+.+| ...|.++.|+++|+++++++.|+.+++|+...... .......+|...|.+++|+|+++++++++.|+++++||
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34444 78899999999999999999999999999966542 12223367788999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
+... ...+..+..|.. .|++++|+|+++++++|+.|++|++||++++++...+.+|...|++++|+
T Consensus 232 ~~~~-~~~~~~l~gH~~------------~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~- 297 (456)
T KOG0266|consen 232 LKDD-GRNLKTLKGHST------------YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS- 297 (456)
T ss_pred ccCC-CeEEEEecCCCC------------ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-
Confidence 9333 223445555544 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCc--cceeeecccCC--eEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGR--ANGVLMGHLEG--ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
+++++|++++.|+.|++||+. .+. +...+.++... ++++.|+|++.++++++.|+.+++||++.
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-------- 365 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS-------- 365 (456)
T ss_pred CCCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC--------
Confidence 999999999999999999975 444 45566666555 99999999999999999999999999997
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (408)
...+..+.+|... ..+.+++..++++.++++|+.|+.|++||+.++..+..
T Consensus 366 --------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 366 --------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR 416 (456)
T ss_pred --------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence 4556677777654 25667777788999999999999999999999999999
Q ss_pred EccC-CCCeeeeeEeCCCCeEEeec--CCCcEEEEeeC
Q 015371 350 LDFH-NAPVRDCCWHPIYPMLISSS--WDCNIVRWEIP 384 (408)
Q Consensus 350 ~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~ 384 (408)
+.+| ...+..+.|+|..+++++++ .|+.+++|..+
T Consensus 417 l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 417 LEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999 88999999999999999998 78999999865
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.4e-44 Score=284.96 Aligned_cols=298 Identities=21% Similarity=0.359 Sum_probs=252.5
Q ss_pred EEEecCceeeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCC-CeeEEEecccccceeeEEEEEeCCCCceEEEee
Q 015371 27 YLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (408)
Q Consensus 27 ~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 104 (408)
++|......+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.++. ...+|..+|.+++|+++|..+++++
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCCeeeeee
Confidence 456666678899999999999999 899999999999999999987 33443 4567777999999999999999999
Q ss_pred cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcceeeecCcC
Q 015371 105 ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPAHK 183 (408)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 183 (408)
.|+.+++||+++++........ . .+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~--~-------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLD--K-------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred cceeeeeeccccceEEEEEecC--C-------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 9999999999999875443322 2 48999999988 788999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 184 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
+.|..+.|- +++..+++.+.|++++||+.+ ....+.. ...+.-...++..+|++++++.-+.|+.|.++.+...
T Consensus 343 g~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 343 GAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred hheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 999999999 899999999999999999976 3333222 2233445678999999999999999999999987652
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
.. ......+++|......+ ...|||||.+|++|+.||.+.+||.+
T Consensus 418 ~r-------------------------------~nkkK~feGh~vaGys~----~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 418 FR-------------------------------LNKKKRFEGHSVAGYSC----QVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred cc-------------------------------cCHhhhhcceeccCcee----eEEEcCCCCeEEeecCCccEEEeech
Confidence 21 13345677776554444 44688899999999999999999999
Q ss_pred CCceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEe
Q 015371 343 SGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWE 382 (408)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~ 382 (408)
+-+.+..+++|.+++..+.|+|... .+||++.||.|++|+
T Consensus 463 t~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999766 899999999999996
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-42 Score=287.84 Aligned_cols=340 Identities=16% Similarity=0.229 Sum_probs=275.5
Q ss_pred eeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCC--eEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
-++|.|-|..+++++.+....+|+... ...|+||.+.|.++.|.|+-. .|++|..|+++++||+.+... ....
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~ 187 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHT 187 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHH
Confidence 478899999999999888877777655 457999999999999999764 589999999999999986543 2334
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeee--------eeee---------------e-------
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV--------TIHK---------------G------- 130 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~---------------~------- 130 (408)
...|.+.|++++|++|+..+++++.|..+.+||+.+.+....... ..++ +
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence 556777999999999999999999999999999854321110000 0000 0
Q ss_pred -------------------------------------e-ee-----------------------ec--------------
Q 015371 131 -------------------------------------L-DF-----------------------SA-------------- 135 (408)
Q Consensus 131 -------------------------------------~-~~-----------------------~~-------------- 135 (408)
+ -+ ..
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence 0 00 00
Q ss_pred ------------CCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc----ceeeecCcCCCceEEEEecCCCCEE
Q 015371 136 ------------DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 136 ------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~l 199 (408)
...+|...|.++....+|-+|++|+.|.++++|.++++. ++....+|.+.|.+++++.....+|
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 003566678888866677899999999999999884442 4455688999999999986677899
Q ss_pred EEecCCCeEEEEeccccccCCccc-----eeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRAN-----GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
+++|.|+++++|+++...+...++ .....|...|++++++|+.+++++||.|.+.++|+++.
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~------------- 494 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ------------- 494 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-------------
Confidence 999999999999987422222211 13456999999999999999999999999999999986
Q ss_pred ccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCC
Q 015371 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 354 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (408)
.....++.+|. +.+|++.|+|..+.+++++.|++|+||.+.+..++.++.+|.
T Consensus 495 ---------------------~~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 495 ---------------------LRLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred ---------------------ceEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 56788899998 778888999999999999999999999999999999999999
Q ss_pred CCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 355 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
..|..+.|-.+++.|++++.||.|++|++.+..
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 999999999999999999999999999998753
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-41 Score=259.11 Aligned_cols=315 Identities=15% Similarity=0.161 Sum_probs=253.4
Q ss_pred eeEecCCccEEEeecCceEEEEEE---ecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLP---VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
+++.+|+..+.++++.+-..-+|. ...+..+.||++.|+|+.||.||.+||||+.+|.|+||+..++.....+....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 577889999999988776555554 34457889999999999999999999999999999999999987666654222
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
..|.=+.|+|.+..|+.|+.||.+.+|.+.++.. ...+.. |..++++=.|.|+|++++++..|
T Consensus 149 ---~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~--~kv~~G------------h~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 149 ---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL--CKVMSG------------HNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred ---CceEEEEecccccEEEeecCCCcEEEEECCCcce--eeEecC------------CCCCcccccccCCCceEEEEecC
Confidence 2588899999999999999999999999987633 222333 34489999999999999999999
Q ss_pred CeEEEEECCCCcceeeecC-cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee--------cccCCe
Q 015371 163 NFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--------GHLEGI 233 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~i 233 (408)
|+|++|+..+++++..+.. ...+..++.++ ..+..++.|+.++.+++-.. ..++.+.... .+...+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~----~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNN----GSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEcc----ccceEEEecCCCCccccccchhhh
Confidence 9999999999999888853 34567888888 88889999999998888773 3555544444 344555
Q ss_pred EEEEecC---CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 234 TFIDSRR---DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 234 ~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
.++.+.| .=.+.++|+.||+|.|||+.. ..++..-.|...
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-----------------------------------~~~R~~c~he~~-- 329 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAA-----------------------------------STLRHICEHEDG-- 329 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEeccc-----------------------------------chhheeccCCCc--
Confidence 5555544 455789999999999999987 223333344422
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
++++. |-+ ..+|++++.||.|+.||.++|+++.++.+|...|.+++++|+.++++|+|.|++.+||+++
T Consensus 330 V~~l~----w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLK----WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEE----EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 22333 333 5799999999999999999999999999999999999999999999999999999999875
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-41 Score=259.24 Aligned_cols=288 Identities=19% Similarity=0.294 Sum_probs=244.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.||.+.|.|+++.|...+|++|+.|++|+|||+.++..... ..+|...|..+++|+--.|+++++.|+.|+.||
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46789999999999999999999999999999999999855543 455666899999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
++..+. +..+..| -..|.|++.+|.-..|++|+.|..+++||+++...+..+.+|..+|.++.+.
T Consensus 222 Le~nkv--IR~YhGH------------lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~- 286 (460)
T KOG0285|consen 222 LEYNKV--IRHYHGH------------LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ- 286 (460)
T ss_pred chhhhh--HHHhccc------------cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee-
Confidence 988765 3444444 3379999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
+-+..+++|+.|++|++||++ .++....+..|...+.+++.+|....+++++.|. |+-|++..
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~------------ 349 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE------------ 349 (460)
T ss_pred cCCCceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc------------
Confidence 555678999999999999987 7888889999999999999999999999999884 99999887
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc-
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF- 352 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 352 (408)
+..+..+.+|......+ +.. +..++++|+++|.+.+||.+++-..+..+.
T Consensus 350 ----------------------g~f~~nlsgh~~iintl------~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~ 400 (460)
T KOG0285|consen 350 ----------------------GEFLQNLSGHNAIINTL------SVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTI 400 (460)
T ss_pred ----------------------cchhhccccccceeeee------eec-cCceEEEcCCceEEEEEecCcCccccccccc
Confidence 34445566666433332 222 246899999999999999999866555421
Q ss_pred -------CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 353 -------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 353 -------~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
.+..|.+.+|...|..|+||..|.+|++|.-..
T Consensus 401 vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 401 VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 245789999999999999999999999998654
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.8e-40 Score=275.45 Aligned_cols=287 Identities=29% Similarity=0.446 Sum_probs=242.9
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.+|.+.|++++|+|++++|++++.||.+++|++.++...... ..|...+..+.|+|+++.+++++.+|.+++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL---KGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE---ecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 457799999999999999999999999999999999877544332 34555788999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
+.+++.. ..+..+ ...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|+
T Consensus 80 ~~~~~~~--~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~- 144 (289)
T cd00200 80 LETGECV--RTLTGH------------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS- 144 (289)
T ss_pred cCcccce--EEEecc------------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc-
Confidence 9875432 222222 2269999999998888888889999999999888888888899999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
+++.++++++.|+.|++||++ ..+....+..|...+.++.|+|+++.+++++.|+.+++||++.
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~------------ 208 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST------------ 208 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC------------
Confidence 778888888889999999975 5667777888988999999999999999999999999999986
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 353 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (408)
...+..+..+.. .+..+.++|++.++++++.||.|++||+.+++.+..+..|
T Consensus 209 ----------------------~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 209 ----------------------GKCLGTLRGHEN------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ----------------------CceecchhhcCC------ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 233334433432 3344567888889998888999999999999999999999
Q ss_pred CCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 354 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
...|.+++|+|++++|++++.||.|++|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999996
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-39 Score=261.51 Aligned_cols=380 Identities=19% Similarity=0.259 Sum_probs=270.7
Q ss_pred eEecCCc-cEEEeecCceEEEEEE-ecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc
Q 015371 7 VNYSGRG-RFSAADSCHVLSRYLP-VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 7 ~~~s~dg-~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
|...|.| ++++..+.-.+.+.+. ......+.+|...++-..|||.|-|+|+|...|.|||||....+.+.+ ......
T Consensus 24 ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-nef~v~ 102 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-NEFQVL 102 (603)
T ss_pred eccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-eeeeec
Confidence 3334544 3677766666655443 334567889999999999999999999999999999999876433322 223334
Q ss_pred eeeEEEEEeCCCCceEEEeecC----cEEEEEECCCCcee------eee--ee-------------------eeeeeeee
Q 015371 85 RWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARE------SLA--NV-------------------TIHKGLDF 133 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~~~------~~~--~~-------------------~~~~~~~~ 133 (408)
.++|..++|++|+++|++.++. |.+.+||..+..-+ .+. .+ .....+.|
T Consensus 103 aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF 182 (603)
T KOG0318|consen 103 AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF 182 (603)
T ss_pred ccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee
Confidence 5589999999999999987753 46778886543111 000 00 01112345
Q ss_pred ecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec---CcCCCceEEEEecCCCCEEEEecCCCeEEE
Q 015371 134 SADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETGHLIFSGSDDSLCKV 210 (408)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~~~~~dg~i~i 210 (408)
.....+|..-|.|+.|+|||+++++++.||.|.+||=.+++.+..+. +|++.|.+++|+ ||+..+++++.|.+++|
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKI 261 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEE
Confidence 55567888899999999999999999999999999999999999887 899999999999 99999999999999999
Q ss_pred Eecccc---------------------------------------ccCCccceeeecccCCeEEEEecCCCCeEEEeecC
Q 015371 211 WDRRCF---------------------------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 211 wd~~~~---------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
||+... .........+.+|...|+++..+|++++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 996421 11223556678899999999999999999999999
Q ss_pred CeEEEEeCCCCcCccccc----ccc-----------cccccccee--e-------------cccccceeeccCCC-----
Q 015371 252 QTTKLWDIRKMSSNTTDN----SRL-----------RDYDWDYRW--M-------------EYPSYARRLKHPHD----- 296 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~----~~~-----------~~~~~~~~~--~-------------~~~~~~~~~~~~~~----- 296 (408)
|.|.-||...+....... ... ....||... . .+..+...+.....
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 999999998866543311 111 111122111 1 11111111111111
Q ss_pred ----cceeeeecccceee--EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce--eEEEccCCCCeeeeeEeCCCCe
Q 015371 297 ----QSLATYKGHSVLRT--LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 297 ----~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 368 (408)
..+..++.+..... ..-.....+++|+++.+++|+.||.|++|.+..++. ...+..|.++|+++++|||+.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 11111111111100 011123457899999999999999999999977553 3345679999999999999999
Q ss_pred EEeecCCCcEEEEeeCCCCC
Q 015371 369 LISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 369 l~s~~~dg~v~iw~~~~~~~ 388 (408)
||++...+.|.+||+.+.+.
T Consensus 502 la~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREV 521 (603)
T ss_pred EEEeccCCcEEEEEcccCce
Confidence 99999999999999988655
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-42 Score=292.39 Aligned_cols=282 Identities=22% Similarity=0.376 Sum_probs=231.1
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
+++..-...++|..|++|+..||.|-.|..|++|.+... ++.+. ....+- ..+=+.+.|-.+.+.|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l----------k~~~~l---~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL----------KDASDL---SNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc----------cchhhh---ccccccccchhhhhcc
Confidence 344444566888888888888888888888888887653 11111 111111 1111223333344444
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
-..... ...+.. |..+|....|+|+.++|++++.|+++++|.+.+..++-.+++|..||.++.|+
T Consensus 438 ~~~~~~--~~~L~G------------H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~- 502 (707)
T KOG0263|consen 438 DDSSGT--SRTLYG------------HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA- 502 (707)
T ss_pred ccCCce--eEEeec------------CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec-
Confidence 433322 222333 44599999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
|.|.+|++++.|++-++|... ...+.+.+.+|.+.|.|+.|+|++.|+++||.|.++++||+.+
T Consensus 503 P~GyYFatas~D~tArLWs~d----~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~------------ 566 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTD----HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST------------ 566 (707)
T ss_pred CCceEEEecCCCceeeeeecc----cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC------------
Confidence 889999999999999999954 7889999999999999999999999999999999999999998
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 353 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (408)
+..++.|.+|..... +++|||+|++|++|+.||.|.+||+.+++++..+.+|
T Consensus 567 ----------------------G~~VRiF~GH~~~V~------al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 567 ----------------------GNSVRIFTGHKGPVT------ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred ----------------------CcEEEEecCCCCceE------EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 677899999985444 4478999999999999999999999999999999999
Q ss_pred CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 354 NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+.|.++.|+.+|..||+||.|++|++||+.....
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999999976443
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-40 Score=240.44 Aligned_cols=290 Identities=21% Similarity=0.341 Sum_probs=248.1
Q ss_pred EecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 29 PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 29 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
|......+..|+++|.++.|+-||+|.++++.|.+|++|+...+..+++ ..+|...|..++.+.|...+++++.|..
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCce
Confidence 4445567889999999999999999999999999999999988876664 3455558999999999999999999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC--CcceeeecCcCCCc
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--NKCSLRIPAHKSDV 186 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v 186 (408)
+.+||+++++. ...+..|.+ .|+.++|+.+...+++|+.|..+++||.++ .++++.+......|
T Consensus 83 v~vwDV~TGkv--~Rr~rgH~a------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 83 VQVWDVNTGKV--DRRFRGHLA------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred EEEEEcccCee--eeecccccc------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 99999999977 445555544 799999999999999999999999999976 46788888788899
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
.++..+ +..|++|+.||+++.||+| .+....... ..+|+++.|+++++..+.++.|+++++.|-.+
T Consensus 149 ~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~t----- 214 (307)
T KOG0316|consen 149 SSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKET----- 214 (307)
T ss_pred eEEEec---ccEEEeeccCCcEEEEEee----cceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccch-----
Confidence 999987 6789999999999999998 454444443 46899999999999999999999999999887
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
++.+..+++|........+.+.- ....+++|++||.|++||+.....
T Consensus 215 -----------------------------GklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 215 -----------------------------GKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred -----------------------------hHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEecccee
Confidence 67888999999877777765443 478999999999999999999999
Q ss_pred eEEEccCCCC-eeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 347 VAKLDFHNAP-VRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 347 ~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+..+..|... |++++++|.-..|+++. ++.+..|.-
T Consensus 262 ~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 262 ISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred eeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 9999988887 89999999988777775 445666643
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-40 Score=246.81 Aligned_cols=277 Identities=21% Similarity=0.328 Sum_probs=234.5
Q ss_pred ceeeEecCCccEEEeecCce---EEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCC--e-eEEE
Q 015371 4 GREVNYSGRGRFSAADSCHV---LSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN--W-KIQK 77 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~---~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~--~-~~~~ 77 (408)
..++.|++|++.+.+.+.+. +|..+..++...+.-....|..++|+|.|+++|+|+-|....||++.+. + ....
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 35789999999988766554 4555556666677777889999999999999999999999999999854 2 2334
Q ss_pred ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEE
Q 015371 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQEL 156 (408)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 156 (408)
.....+|.+.+.++.|.+ ...|++++.|.+..+||+++++.. ..+..|.+ .|.++.++| +++.+
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~--~~f~GH~g------------DV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT--QVFHGHTG------------DVMSLSLSPSDGNTF 202 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE--EEecCCcc------------cEEEEecCCCCCCeE
Confidence 445778888999999987 556899999999999999998763 33445444 899999999 99999
Q ss_pred EEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee--cccCCeE
Q 015371 157 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGIT 234 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~ 234 (408)
++|+.|+..++||++.+.+++.|.+|+..|++++|. |++.-|++|+.|+++++||+| ..+.+..+. ....+|+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlR----aD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLR----ADQELAVYSHDSIICGIT 277 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeec----CCcEEeeeccCcccCCce
Confidence 999999999999999999999999999999999999 999999999999999999998 444444443 3456899
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+++|+..|++|++|..|..+.+||.-. ++.+..+.+|...+.++
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk----------------------------------~e~vg~L~GHeNRvScl-- 321 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLK----------------------------------GERVGVLAGHENRVSCL-- 321 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccc----------------------------------cceEEEeeccCCeeEEE--
Confidence 999999999999999999999999876 56678888998665554
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
..+|||.-+++|+.|..++||.
T Consensus 322 ----~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 ----GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----EECCCCcEEEecchhHheeecC
Confidence 6889999999999999999994
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-39 Score=302.28 Aligned_cols=296 Identities=21% Similarity=0.346 Sum_probs=232.8
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe----eEEEecccccceeeEEEEEeCC-CCceEEEeecCcEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIV 109 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 109 (408)
.+.+|.+.|.+++|+|+|++||+|+.|+.|+||++.... ..........+...|.+++|+| ++.+|++++.||.|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 355699999999999999999999999999999975421 1000001111234789999987 57899999999999
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceE
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 188 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 188 (408)
++||+.+++. ...+.. |...|.+++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+.+
T Consensus 558 ~lWd~~~~~~--~~~~~~------------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 558 QVWDVARSQL--VTEMKE------------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEECCCCeE--EEEecC------------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 9999987654 223333 344799999997 7889999999999999999999888887754 68999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccc
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 268 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 268 (408)
+.|+++++.+|++|+.||.|++||++. .......+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~---~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--- 695 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRN---PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--- 695 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCC---CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc---
Confidence 999878899999999999999999862 223566778999999999997 6789999999999999999752110
Q ss_pred ccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
....++..+.+|..... ..+|++++.+|++|+.|+.|++|+......+.
T Consensus 696 -------------------------~~~~~l~~~~gh~~~i~------~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~ 744 (793)
T PLN00181 696 -------------------------INETPLHSFMGHTNVKN------FVGLSVSDGYIATGSETNEVFVYHKAFPMPVL 744 (793)
T ss_pred -------------------------cCCcceEEEcCCCCCee------EEEEcCCCCEEEEEeCCCEEEEEECCCCCceE
Confidence 01244566777764332 33678889999999999999999987654432
Q ss_pred EE-------------ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 349 KL-------------DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 349 ~~-------------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
.+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 745 s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 745 SYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 22 234567999999999999999999999999996
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-39 Score=240.44 Aligned_cols=282 Identities=16% Similarity=0.222 Sum_probs=217.2
Q ss_pred eEecCCc-cEEEeecCceEEEEEEec--------CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEE
Q 015371 7 VNYSGRG-RFSAADSCHVLSRYLPVN--------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (408)
Q Consensus 7 ~~~s~dg-~~~~~~~~~~~~~~~~~~--------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 77 (408)
++..+.+ ..+.+.+.+...-.|... ..+.+.||+..|..++.++||++.++++.|+++++||+.+++..+.
T Consensus 21 la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~ 100 (315)
T KOG0279|consen 21 LAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR 100 (315)
T ss_pred EEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE
Confidence 4444443 344455555444333322 2457899999999999999999999999999999999999855554
Q ss_pred ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCE
Q 015371 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQE 155 (408)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 155 (408)
..+|...|.+++|+||.+.+++|+.|.+|++|++-.........- .+...|.|+.|+|+ ...
T Consensus 101 ---f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~-------------~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 101 ---FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED-------------SHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ---EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC-------------CCcCcEEEEEEcCCCCCcE
Confidence 446666899999999999999999999999999876543222111 11337999999997 789
Q ss_pred EEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
|++++.|++|++||+++.+....+.+|.+.++.++++ |||.++++|+.||.+.+||++ .++.+..+ +|...|.+
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~----~~k~lysl-~a~~~v~s 238 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLN----EGKNLYSL-EAFDIVNS 238 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEcc----CCceeEec-cCCCeEee
Confidence 9999999999999999999999999999999999999 999999999999999999986 56665554 57899999
Q ss_pred EEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEE
Q 015371 236 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 315 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
++|+|+.-.|+.+. +..|+|||+............. .+. ........+
T Consensus 239 l~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~------------------------------~g~-s~~~~~~~c 286 (315)
T KOG0279|consen 239 LCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG------------------------------IGP-SSKAGDPIC 286 (315)
T ss_pred EEecCCceeEeecc-CCceEEEeccchhhhhhccccc------------------------------ccc-ccccCCcEE
Confidence 99999876665554 5569999999854433221110 000 000111234
Q ss_pred eeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 316 FSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 316 ~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
.+.+|++||..|++|..|+.|++|.+.
T Consensus 287 lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 566899999999999999999999874
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=271.20 Aligned_cols=296 Identities=21% Similarity=0.329 Sum_probs=248.9
Q ss_pred ceeeecccCceeEEEE-cCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 33 PWKVDGMNSRVYTSQF-SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~-s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
...+.|..+.|..+.| .|+.++||.++..+.+++|++.+..+. ...+|...|.++....+|.+|++++.|.++++
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 3457788999999998 567799999999999999998876544 45678889999996667889999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcc-----e----eeecC
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKC-----S----LRIPA 181 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~----~~~~~ 181 (408)
|.++++...... .....+|...|.+++++..+ ..|++++.|.++++|++...+. . .....
T Consensus 392 Wr~~~~~~~~~~----------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 392 WRLNNNCSKSLC----------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EEecCCcchhhh----------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999544322111 11123456689999997744 5889999999999999976221 1 12356
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
|...|++++++ |+..++++||.|.+.++|++. ......++.+|...+.++.|+|..+.++++|.|++|+||.+.+
T Consensus 462 HdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 462 HDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred hcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 99999999999 899999999999999999974 8889999999999999999999999999999999999999998
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
..++.++.+|... +....|-.+|+.|++++.||-|++|++
T Consensus 537 ----------------------------------fSClkT~eGH~~a------Vlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 537 ----------------------------------FSCLKTFEGHTSA------VLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ----------------------------------ceeeeeecCccce------eEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 5678999999833 333356667999999999999999999
Q ss_pred CCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 342 VSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
++++++.++..|++.|++++.+|...+++||+.||.|.+|.=.+..
T Consensus 577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999999999999999999999999999999999999999765543
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=259.97 Aligned_cols=276 Identities=21% Similarity=0.305 Sum_probs=230.7
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
..+.|.|+|+.+.++.......+|.... ...++.|...|+++.|+++|.++++|+.+|.|++|+..-+ .++ ...
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk--~~~ 176 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK--IIQ 176 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH--Hhh
Confidence 4688999999888877666666665433 3457799999999999999999999999999999997643 222 122
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
..|...|++++|+|+...+++++.||+|+|||....+.+... .. |...|.+++|+|...++++++.
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--~G------------HgwdVksvdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RG------------HGWDVKSVDWHPTKGLIASGSK 242 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--cc------------CCCCcceeccCCccceeEEccC
Confidence 334468999999999999999999999999999766553332 23 3447999999999999999999
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR- 240 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 240 (408)
|..|++||.+++.++.++.+|+..|..+.|+ +++++|+++|.|..++++|+| .-+.+..+++|...++++.|+|
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR----~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIR----TMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred CceeEeecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehh----HhHHHHHhhcchhhheeeccccc
Confidence 9999999999999999999999999999999 888999999999999999987 6778888999999999999999
Q ss_pred CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee-eecccceeeEEEEEeecc
Q 015371 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT-YKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (408)
...+|.+|+.||.|..|.+... .++.. -.+|. ..+|+++
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~----------------------------------~p~~~i~~AHd------~~iwsl~ 357 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLE----------------------------------EPLGEIPPAHD------GEIWSLA 357 (464)
T ss_pred cccceeeccCCCceEEEecccc----------------------------------ccccCCCcccc------cceeeee
Confidence 5668999999999999998731 22222 22333 6788999
Q ss_pred ccCCCcEEEEeeCCCeEEEEECC
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
|+|-|.+|++|+.|.++++|.-.
T Consensus 358 ~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccceeEeecCCCcceeeeccC
Confidence 99999999999999999999753
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-39 Score=274.44 Aligned_cols=235 Identities=22% Similarity=0.361 Sum_probs=204.7
Q ss_pred eeeEecCCccEEEeecCce---EEEEEEec-------------------------------CceeeecccCceeEEEEcC
Q 015371 5 REVNYSGRGRFSAADSCHV---LSRYLPVN-------------------------------GPWKVDGMNSRVYTSQFSN 50 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~---~~~~~~~~-------------------------------~~~~l~~h~~~v~~~~~s~ 50 (408)
.|..||+|++.+|.+-.+- +|.+.|.. ....+.||.++|+.+.|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 4788999999887654333 33333210 1135789999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
+.++|++++.|+++|+|.+.+...+. ...+|..+|.++.|+|-|-++|+++.|++.++|....... ...+..|..
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P--lRifaghls 536 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP--LRIFAGHLS 536 (707)
T ss_pred cccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc--hhhhccccc
Confidence 99999999999999999999875554 4457888999999999999999999999999999887544 333434433
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEE
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 210 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~i 210 (408)
.|.|+.|+|+..++++|+.|.+|++||+.+|..++.+.+|.++|++++|+ |+|.+|++|+.||.|.+
T Consensus 537 ------------DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 537 ------------DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLIKI 603 (707)
T ss_pred ------------ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc-CCCceEeecccCCcEEE
Confidence 79999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred EeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 211 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 211 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
||+. .+..+..+.+|++.|.++.|+.+|..|++++.|.+|++||+..
T Consensus 604 WDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 604 WDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9974 8899999999999999999999999999999999999999986
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-39 Score=263.30 Aligned_cols=285 Identities=19% Similarity=0.278 Sum_probs=249.8
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.++..|.+.|.++.|+|...+++++-.+|.|.|||.++...+..+..... +|.+..|-+..+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~---PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV---PVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc---chhhheeeeccceEEEecCCceEEEEe
Confidence 45667999999999999999999999999999999999876666555444 899999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEEEEe
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~ 192 (408)
..+.+. +..+..|.. -|.+++.+|...++++++.|-.|++||.+.+ .+.+++.+|+..|.+++|+
T Consensus 84 ynt~ek--V~~FeAH~D------------yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 84 YNTGEK--VKTFEAHSD------------YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred ccccee--eEEeecccc------------ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 998866 444445444 7999999999999999999999999999765 6778899999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC--CeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
|.|.+.+++++-|++|++|.+. ...+..++.+|...|+++.+-+.| .+|++|+.|..+++||.++
T Consensus 150 PkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--------- 216 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--------- 216 (794)
T ss_pred CCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch---------
Confidence 9999999999999999999964 788889999999999999998754 5999999999999999998
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
..++.++++|....... .|+|.-.++++|++||+++||+..+.+...++
T Consensus 217 -------------------------k~CV~TLeGHt~Nvs~v------~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 217 -------------------------KSCVQTLEGHTNNVSFV------FFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred -------------------------HHHHHHhhcccccceEE------EecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 57788889998554433 56667789999999999999999999988888
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEE
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIV 379 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~ 379 (408)
...-+.|++++-.+.++.++.|...|.|.
T Consensus 266 n~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 266 NYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred hcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 87788999999999888888887777664
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-38 Score=243.24 Aligned_cols=305 Identities=14% Similarity=0.178 Sum_probs=244.8
Q ss_pred cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.....+..|++.|.+++.+|+.+++|||+.|..-.||++.++.... ...+|+..|+++.|+.+|.+||+|..+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 3456788999999999999999999999999999999999987443 4566777999999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
||+..++.......... ..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.
T Consensus 132 v~~~stg~~~~~~~~e~--------------~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEV--------------EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred EEEcccCceEEEeeccc--------------CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 99999887644332111 1588899999999999999999999999999888899999999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc-cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
|. |+|+.++++..||+|++|++. ++.++..+... ....+++.++..+..++.|+.++.+++-+..+++.....+
T Consensus 198 f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 198 FI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred cc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 99 789999999999999999965 67777766532 3456788899999999999999999998877643322211
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (408)
. ........+.. ...++-+..++..-.+.|+|+-||+|.|||+...+..+.
T Consensus 273 ~--------------------------~~~~l~~~~e~---~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~ 323 (399)
T KOG0296|consen 273 G--------------------------TVPELKPSQEE---LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI 323 (399)
T ss_pred C--------------------------CCccccccchh---hhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence 0 00000011111 111222334555567899999999999999988777666
Q ss_pred EccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 350 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+. |..+|+.+.|-+ ..+|++++.||.|+.||.+++..
T Consensus 324 c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 324 CE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred cc-CCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 65 888999999998 77999999999999999998765
No 36
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=231.04 Aligned_cols=288 Identities=17% Similarity=0.294 Sum_probs=241.6
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w 112 (408)
..+++|...|.+++|+-+|..||+|+.|+++.+|+++.. .........+|...|-.++|+| ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567899999999999999999999999999999999877 4445556778888899999988 56789999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
|+..++......... .=..+.|+|+|+++++++.|..|...|.++.+.....+ ....+..++|+
T Consensus 93 d~r~~k~~~~i~~~~---------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~ 156 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG---------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWN 156 (313)
T ss_pred EeccCcEEEEeeccC---------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeec
Confidence 999887644333222 23457899999999999999999999999887766554 46678899999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
.++++++.....|+|.|... +..+++..+++|.....||.|+|+|++|++|+.|-.+.+||+...-
T Consensus 157 -~~nd~Fflt~GlG~v~ILsy----psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--------- 222 (313)
T KOG1407|consen 157 -NSNDLFFLTNGLGCVEILSY----PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--------- 222 (313)
T ss_pred -CCCCEEEEecCCceEEEEec----cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh---------
Confidence 77888888888899999985 4889999999999999999999999999999999999999998743
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
+.+.+..+.- .+..+.||-||++||+|++|..|-|=++++|..+.+++
T Consensus 223 -------------------------C~R~isRldw------pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~- 270 (313)
T KOG1407|consen 223 -------------------------CERCISRLDW------PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP- 270 (313)
T ss_pred -------------------------hheeeccccC------ceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-
Confidence 3344444432 22334788899999999999999999999999999997
Q ss_pred CCCCeeeeeEeCCCCeEEeecCC---------CcEEEEeeC
Q 015371 353 HNAPVRDCCWHPIYPMLISSSWD---------CNIVRWEIP 384 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d---------g~v~iw~~~ 384 (408)
+.++...++|+|...+||-++.| |.|++|-++
T Consensus 271 ~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 78899999999999999887654 566766554
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-37 Score=257.43 Aligned_cols=287 Identities=21% Similarity=0.300 Sum_probs=246.2
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.||...|.++++|.|...+++|+. +.++||+..+.+++.+.... .+.+..|.|.++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 467799999999999999988888865 58999999998888765433 588899999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC-----Cccee--ee-----cC
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-----NKCSL--RI-----PA 181 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~--~~-----~~ 181 (408)
+..... ....+.|.+ .|.+++.+||++.+++|+.|.+|++||..- +.... .+ -.
T Consensus 441 laS~~l--~Eti~AHdg------------aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 441 LASASL--VETIRAHDG------------AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred eehhhh--hhhhhcccc------------ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 987765 233334444 899999999999999999999999999741 21111 11 12
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
-+..|.|+.++ |++.+|+++--|.++++|-++ +.+....+-||.-+|.|+..+||+++++||+.|..|++|-+.-
T Consensus 507 l~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 507 LEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred ccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence 45789999999 999999999999999999975 7788888999999999999999999999999999999999876
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
+.+-..+-+|.... .++.|-|+..++++++.|+.|+-||-
T Consensus 582 ----------------------------------GDCHKS~fAHdDSv------m~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 582 ----------------------------------GDCHKSFFAHDDSV------MSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ----------------------------------chhhhhhhcccCce------eEEEEcccceeEEEecCcceEEeech
Confidence 56677777887433 33357777899999999999999999
Q ss_pred CCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 342 VSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
...+.++.+.+|...|++++.+|+|.+++++|.|..|++|....
T Consensus 622 ~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 622 EKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999998765
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=225.40 Aligned_cols=290 Identities=19% Similarity=0.303 Sum_probs=235.8
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
|..++||+.+++.+.|+.+|.+|.+|+.|.+..||-..+++.+. ...+|.+.|.++..+.+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 45688999999999999999999999999999999988886665 456788899999999999999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-----CCeEEEEECC-------CCcceeeec
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQ-------ANKCSLRIP 180 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~ 180 (408)
|+++++......... +|..+.|+++|++++.... .+.|.++|++ +.++...+.
T Consensus 80 Dv~tGk~la~~k~~~---------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS---------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred EcCCCcEEEEeecCC---------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 999998754433322 5999999999998887754 4689999997 556788888
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
.+...++.+-|. +-+++|++|.+||.|..||++ ...+.+.....|...|+.+.+++|..++++++.|.+-++||.+
T Consensus 145 t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~---~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 145 TPDSKITSALWG-PLGETIIAGHEDGSISIYDAR---TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred CCccceeeeeec-ccCCEEEEecCCCcEEEEEcc---cCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 899999999999 889999999999999999986 2245666678899999999999999999999999999999998
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCe--E--
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS--V-- 336 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~--i-- 336 (408)
+. ..++++.... .+.+.+++|-...++.|+.... |
T Consensus 221 tl----------------------------------~v~Kty~te~-------PvN~aaisP~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 221 TL----------------------------------EVLKTYTTER-------PVNTAAISPLLDHVILGGGQEAMDVTT 259 (327)
T ss_pred ce----------------------------------eeEEEeeecc-------cccceecccccceEEecCCceeeeeee
Confidence 83 2333333322 2223356666666666553221 2
Q ss_pred ----------EEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 337 ----------YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 337 ----------~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-+..
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 2333333355778889999999999999999999999999999986654
No 39
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=8.8e-38 Score=251.68 Aligned_cols=314 Identities=20% Similarity=0.278 Sum_probs=243.4
Q ss_pred EEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe----eEEEecccccceeeEEEEEeCCCCceEE
Q 015371 26 RYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFLV 101 (408)
Q Consensus 26 ~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 101 (408)
...|......+.+|+..|.++++.|.|.+|++|+.|.+|++||+.... ....+.....| .|.+++|++.+..|+
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQIL 230 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEE
Confidence 344555567899999999999999999999999999999999987531 22222333344 799999999999999
Q ss_pred EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcc-eeee
Q 015371 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKC-SLRI 179 (408)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~ 179 (408)
+.+.....+|+|-...+. ....++..-+.-.....+|...++|.+|+|+. ..+++++.||++++||+...+. ...+
T Consensus 231 vvsg~aqakl~DRdG~~~--~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEI--VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEecCcceeEEccCCcee--eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 999999999999876544 22233333333334456788899999999954 5789999999999999976543 2333
Q ss_pred c-----CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC--CeEEEEecCCCCeEEEeecCC
Q 015371 180 P-----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGRYFISNGKDQ 252 (408)
Q Consensus 180 ~-----~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~ 252 (408)
+ +..-+++.++|+ +++++||+|..||.|.+|+.+... .......-.+|.. .|++|.|+++|++|++-+.|+
T Consensus 309 k~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred eeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 2 334578999999 999999999999999999975321 2233344557777 899999999999999999999
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 332 (408)
++++||++... +++....+-...... ...+|||+.++|++|+.
T Consensus 387 tLKvWDLrq~k---------------------------------kpL~~~tgL~t~~~~----tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 387 TLKVWDLRQFK---------------------------------KPLNVRTGLPTPFPG----TDCCFSPDDKLILTGTS 429 (641)
T ss_pred ceeeeeccccc---------------------------------cchhhhcCCCccCCC----CccccCCCceEEEeccc
Confidence 99999999844 333333333222222 23368889999999875
Q ss_pred ------CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 333 ------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 333 ------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
.|.+.+||..+.+.++++......|..+.|+|.-+.|+.++.||.+++|=
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 47899999999999999988888999999999999999999999999873
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.5e-39 Score=245.25 Aligned_cols=274 Identities=25% Similarity=0.356 Sum_probs=228.7
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
....|+|+++. ...+++|..|.+|+|||.++-.... ...+|.+.|.|+.|. .+.|++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 34679999986 3468999999999999988765444 456788899999985 6699999999999999999997
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc---ceeeecCcCCCceEEEEecCC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~ 195 (408)
.. ..+..|- ..|..+.|+ +.++++++.|.++.+||+.+.. +...+.+|...|+.+.|+
T Consensus 269 ~l--~tlihHc------------eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--- 329 (499)
T KOG0281|consen 269 PL--NTLIHHC------------EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--- 329 (499)
T ss_pred hh--hHHhhhc------------ceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---
Confidence 63 3333332 369999996 4589999999999999997764 344568999999999997
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
.+++++++.|.+|++|++ .+.+.+.++.+|...|.|+.+. ++++++|+.|.+|++||+..
T Consensus 330 ~kyIVsASgDRTikvW~~----st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~-------------- 389 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWST----STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-------------- 389 (499)
T ss_pred cceEEEecCCceEEEEec----cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccc--------------
Confidence 569999999999999996 4899999999999999999885 89999999999999999998
Q ss_pred cccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc---------e
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA---------Q 346 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~ 346 (408)
+.++..+++|.....+++ | |.+.|++|..||.|++||+..+. +
T Consensus 390 --------------------G~cLRvLeGHEeLvRciR------F--d~krIVSGaYDGkikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 390 --------------------GACLRVLEGHEELVRCIR------F--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred --------------------cHHHHHHhchHHhhhhee------e--cCceeeeccccceEEEEecccccCCcccccchH
Confidence 678899999986665543 3 47889999999999999998764 3
Q ss_pred eEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 347 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+.++..|++.|..++|. ...+++++.|.+|.|||+..+..
T Consensus 442 l~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred HHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 34556789999999995 45799999999999999977644
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-38 Score=230.63 Aligned_cols=293 Identities=22% Similarity=0.324 Sum_probs=244.0
Q ss_pred cCceeeecccCceeEEEEcC---CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc
Q 015371 31 NGPWKVDGMNSRVYTSQFSN---DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 107 (408)
+.|.+-.||+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.. ..+|.+.|.+.+.+.+...-++++.|=
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccc
Confidence 45677889999999999986 899999999999988888777765554 456777999999999988899999999
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceeeecCcCCCc
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDV 186 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v 186 (408)
+.++||.-++.... .+. |..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|
T Consensus 82 takvw~a~tgdelh--sf~-------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 82 TAKVWDAVTGDELH--SFE-------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhhhhhhhhhh--hhh-------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 99999988876522 221 22259999999999999999999999999997654 566788999999
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
..+.|. ...+.|++++.|++||+||.| ++..++.+. ...+|+++.++++|++|.++ ..+.|.+||..+.
T Consensus 147 r~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf---- 215 (334)
T KOG0278|consen 147 RTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF---- 215 (334)
T ss_pred eeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccc----
Confidence 999999 778888899999999999987 777777765 46789999999999966554 5678999999873
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
..+..++.. .-+.+..++|+...+++|++|..++.||..+++.
T Consensus 216 ------------------------------~~lKs~k~P-------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 216 ------------------------------GLLKSYKMP-------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred ------------------------------cceeeccCc-------cccccccccCCCceEEecCcceEEEEEeccCCce
Confidence 233333222 1233446788899999999999999999999999
Q ss_pred eEEE-ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 347 VAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 347 ~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
+..+ ++|.++|.++.|+|+|...++||+||+|++|....++..
T Consensus 259 i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 259 IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9886 899999999999999999999999999999998766543
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=241.70 Aligned_cols=288 Identities=22% Similarity=0.295 Sum_probs=241.1
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe-----cccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD-----IETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
|....+-|..|||||+||++|+.||-|.+||..+++..... ....-+..+|.|+.|+.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 56678999999999999999999999999999887432211 1223356689999999999999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
.+.++.+... +. ..|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...|.
T Consensus 291 ri~tG~ClRr--Fd-----------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 291 RIETGQCLRR--FD-----------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred EEecchHHHH--hh-----------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 9999876332 22 1234479999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeec--ccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
++|..+++++.||+|++|+.. +.+++.+++. ..-+|.++..-| +...++++...+++.+.++..
T Consensus 358 -~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-------- 424 (508)
T KOG0275|consen 358 -DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-------- 424 (508)
T ss_pred -CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--------
Confidence 999999999999999999964 6777777654 345677777666 456788999999999999875
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeecc-cceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
+.++.+... ......+.+ ..||.|.++.+.++|+.++.|.+.+|+...
T Consensus 425 ---------------------------QvVrsfsSGkREgGdFi~~----~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 425 ---------------------------QVVRSFSSGKREGGDFINA----ILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred ---------------------------eEEeeeccCCccCCceEEE----EecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 555555432 222333333 467779999999999999999999999999
Q ss_pred EEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 349 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
++..|...|..++-+|..+.|++-++||.+++|.
T Consensus 474 tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999995
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-36 Score=253.07 Aligned_cols=341 Identities=18% Similarity=0.188 Sum_probs=267.3
Q ss_pred eeEecCCccEEEeecCceEEEEEEec---CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVN---GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
|+.-++|.-.++.+-.+...+++... ...++.||...|+++.|+..|.+||+||.|+.|.+||+-...... ...
T Consensus 70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~ 146 (888)
T KOG0306|consen 70 CLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLR 146 (888)
T ss_pred EeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---Eee
Confidence 56667888778877777766666654 567899999999999999999999999999999999997664443 456
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeee--------eeee-------------------------
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV--------TIHK------------------------- 129 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~------------------------- 129 (408)
+|...|+.+-|..+.+++++.+.|+.|++||+++..+...... ....
T Consensus 147 GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 147 GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccccc
Confidence 7777899999998889999999999999999986543211000 0000
Q ss_pred --------------------eeee---------ecCC-------------------------------------------
Q 015371 130 --------------------GLDF---------SADG------------------------------------------- 137 (408)
Q Consensus 130 --------------------~~~~---------~~~~------------------------------------------- 137 (408)
...+ ...+
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 0000 0000
Q ss_pred ---------------------------------------------------------------CCCccceEEEEEcCCCC
Q 015371 138 ---------------------------------------------------------------DEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 138 ---------------------------------------------------------------~~~~~~i~~~~~~~~~~ 154 (408)
.+|...|.+++++.+..
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~ 386 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI 386 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce
Confidence 24555788889988877
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
.+++|+ .+.+++|+..+.+++.++.. +.+.+..|. |.++++++|...|.+.+||+. ....+....+|.+.|.
T Consensus 387 ~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdla----S~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 387 LLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFV-PGDRYIVLGTKNGELQVFDLA----SASLVETIRAHDGAIW 458 (888)
T ss_pred eeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEec-CCCceEEEeccCCceEEEEee----hhhhhhhhhcccccee
Confidence 666664 67899999999999999974 488999999 889999999999999999964 7777888889999999
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee-cccceeeEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIR 313 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 313 (408)
+++.+||++.+++++.|.+|++||+.-..... +.....+. .|........
T Consensus 459 si~~~pD~~g~vT~saDktVkfWdf~l~~~~~-----------------------------gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSADKTVKFWDFKLVVSVP-----------------------------GTQKKVLSLKHTRTLELED 509 (888)
T ss_pred eeeecCCCCceEEecCCcEEEEEeEEEEeccC-----------------------------cccceeeeeccceEEeccc
Confidence 99999999999999999999999986522100 01101111 1122222333
Q ss_pred EEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 314 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 314 ~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
-+.+..+||||++||++--|.+|+||-+.+.+....+.+|.-||.++..|||+++++|||.|.+|+||-++-+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence 4566689999999999999999999999999999999999999999999999999999999999999988654
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=263.64 Aligned_cols=277 Identities=26% Similarity=0.402 Sum_probs=227.9
Q ss_pred eeeEecCCccEEEeecCceEEEEEEe-----cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCC-eeEEEe
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPV-----NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKD 78 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~-----~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~ 78 (408)
.++.||+||+++++.........+.. .....+.+|...|.+++|+|+++++++++.|++|+|||+... ..+.
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~-- 240 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK-- 240 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE--
Confidence 46899999999888777766666655 234566899999999999999999999999999999999443 3333
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
...+|...|++++|+|+++++++|+.|++|++||+.+++. ...+..|.. +|.+++|++++.+|++
T Consensus 241 -~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--~~~l~~hs~------------~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 241 -TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--VRKLKGHSD------------GISGLAFSPDGNLLVS 305 (456)
T ss_pred -EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE--EEeeeccCC------------ceEEEEECCCCCEEEE
Confidence 3447777999999999999999999999999999998655 444555544 8999999999999999
Q ss_pred EecCCeEEEEECCCCc--ceeeecCcCCC--ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCe-
Q 015371 159 AGSDNFIYVYDLQANK--CSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI- 233 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i- 233 (408)
++.|+.|++||+.++. +...+..+... +++++|+ +++.++++++.|+.+++||++ .......+.+|...+
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~----~~~~~~~~~~~~~~~~ 380 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLR----SGKSVGTYTGHSNLVR 380 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEcc----CCcceeeecccCCcce
Confidence 9999999999999998 55666665555 9999999 999999999999999999975 677788888887753
Q ss_pred --EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeE
Q 015371 234 --TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 311 (408)
Q Consensus 234 --~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
.+...++.+.++++|+.|+.|++||+.+ ...+..+.+|.
T Consensus 381 ~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s----------------------------------~~~~~~l~~h~----- 421 (456)
T KOG0266|consen 381 CIFSPTLSTGGKLIYSGSEDGSVYVWDSSS----------------------------------GGILQRLEGHS----- 421 (456)
T ss_pred eEecccccCCCCeEEEEeCCceEEEEeCCc----------------------------------cchhhhhcCCC-----
Confidence 3445578899999999999999999987 35556666663
Q ss_pred EEEEeeccccCCCcEEEEee--CCCeEEEEECC
Q 015371 312 IRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLV 342 (408)
Q Consensus 312 ~~~~~~~~~s~~~~~l~~~~--~dg~i~vwd~~ 342 (408)
...+..+++++..+++++++ .|+.+++|...
T Consensus 422 ~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 13334557788899999998 68899999753
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-37 Score=236.19 Aligned_cols=274 Identities=18% Similarity=0.326 Sum_probs=230.4
Q ss_pred EecCCccEEEeecCceEEEEEEec---CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc
Q 015371 8 NYSGRGRFSAADSCHVLSRYLPVN---GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
-|.|+-...++.+.+.....++.. ....|+||++.|..++|+..|++||+++.|-.+++||.++. ........+|
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh 192 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGH 192 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCc
Confidence 345665556666556655555543 34578999999999999999999999999988999998763 2222344566
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
+..|.+++|-|.|.+|++++.|.+|+.|++.++.. +..+..+.. .|..++.+.||..+++++.|.+
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~e------------wvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHSE------------WVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeEEeccccee--EEeccCchH------------hEEEEEecCCeeEEEecCCCce
Confidence 66899999999999999999999999999999866 444545444 7999999999999999999999
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecC--------------CCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADE--------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
|++|-+.++++...++.|+.+|.+++|.|. .+.++.+++.|++|++||+. .+.++.++.+|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----tg~cL~tL~ghd 334 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----TGMCLFTLVGHD 334 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----CCeEEEEEeccc
Confidence 999999999999999999999999999841 13589999999999999964 899999999999
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
+.|..++|+|.|+||+++.+|+++++||+++ .++...+..|...
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~----------------------------------~~cmk~~~ah~hf-- 378 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKN----------------------------------LQCMKTLEAHEHF-- 378 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEecc----------------------------------ceeeeccCCCcce--
Confidence 9999999999999999999999999999998 4666677777633
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
+.+.+|..+..++++|+-|..+++|..
T Consensus 379 ----vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 ----VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ----eEEEecCCCCceEEeccccceeeeeec
Confidence 344478778889999999999999974
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=237.47 Aligned_cols=248 Identities=21% Similarity=0.283 Sum_probs=220.5
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
...+|.+.|.|+++.|.++++++|+.|++++|||+.+++.+ ..+..+.. .|..+++++-..+++++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltltGhi~------------~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLTGHIE------------TVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeecchhh------------eeeeeeecccCceEEEe
Confidence 34578889999999999999999999999999999999774 33444444 69999999999999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
+.|+.|+.||++..+.++.+.+|-..|.|++.+ |.-+.|++|+.|.++++||+| ....+..+.+|..+|..+.+.
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEEee
Confidence 999999999999999999999999999999999 788899999999999999988 788899999999999999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
|-...+++|+.|++|++||++. ++...++..|... +.+++
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hkks------vral~ 326 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHKKS------VRALC 326 (460)
T ss_pred cCCCceEEecCCceEEEeeecc----------------------------------CceeEeeecccce------eeEEe
Confidence 9888899999999999999998 5666677777633 33446
Q ss_pred ccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+|....+|+++.|. |+-|++..|+.++.+.+|...|++++...|+ ++++|++.|.+.+||..++-.
T Consensus 327 lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 327 LHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 778888999998885 9999999999999999999999999998876 888999999999999988644
No 47
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=233.52 Aligned_cols=299 Identities=22% Similarity=0.335 Sum_probs=235.8
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCC---------------eeEEEecccccceeeEEEEEeCCCCc
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN---------------WKIQKDIETKALRWTITDTSLSPDQR 98 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 98 (408)
..+..|+.++.+.+|||||.++|||+.|..|+|.|++.. .....+.....|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 467899999999999999999999999999999998721 01112233456777899999999999
Q ss_pred eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceee
Q 015371 99 FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 178 (408)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 178 (408)
.|++++.|++|+++|+.....+........ ..+|.++.|+|.|.+|++|.....+++||+++.++...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQD------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhc------------cceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 999999999999999976554332222211 12699999999999999999999999999999887654
Q ss_pred e---cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-ccc-CCeEEEEecCCCCeEEEeecCCe
Q 015371 179 I---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHL-EGITFIDSRRDGRYFISNGKDQT 253 (408)
Q Consensus 179 ~---~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~l~~~~~d~~ 253 (408)
- ..|.+.|+++.++ +.+++.++++.||.|++|| ....+++.++. +|. ..|.+..|..+++++++.+.|..
T Consensus 254 anPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwD----GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWD----GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred cCcccccccceeEEEec-CCccEEEEeccCCcEEeec----cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 4 4689999999999 8999999999999999999 55777777764 454 46889999999999999999999
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS- 332 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 332 (408)
+++|.+.+ ++++..+.+-...... .......|.....|++.-.+
T Consensus 329 vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 329 VKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVLFPDEA 373 (430)
T ss_pred eeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEEccccc
Confidence 99999998 4445555443211110 01111234445667766554
Q ss_pred CCeEEEEECCCCceeEEE-ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 333 DNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 333 dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
.+.+.-||.++...+..+ .+|++.+..+.-||.+..++||+.|-.+++|--.
T Consensus 374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 467999999998776655 4899999999999999999999999999999644
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-37 Score=224.35 Aligned_cols=283 Identities=21% Similarity=0.308 Sum_probs=224.3
Q ss_pred eEEEEcCC-CCeEEEE-------eCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC-CceEEEeecCcEEEEEEC
Q 015371 44 YTSQFSND-GSFFVAA-------SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDV 114 (408)
Q Consensus 44 ~~~~~s~~-~~~l~t~-------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~ 114 (408)
+++.|||- .++||.+ ...|++.|-++.....+...... .-...+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57889992 2334433 24688999998655444443332 23347999999995 467788899999999995
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
.. ...++..++.|+. +|.++.|++ ++..+++++.|++|++|+...++.+.++.+|...|...+|+|
T Consensus 91 ~~-~s~Pi~~~kEH~~------------EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 91 TM-PSKPIHKFKEHKR------------EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred CC-CCcchhHHHhhhh------------heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCC
Confidence 43 3334555555544 899999998 566788889999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
..++++++++.|+++++||+| ..++.+. +..|...|.++.|+. +...+++|+.|+.|+.||+++..
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr---~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------- 224 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVR---SPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------- 224 (311)
T ss_pred CCCCeEEEccCCceEEEEEec---CCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---------
Confidence 999999999999999999997 2355554 889999999999987 56789999999999999999843
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC-CcEEEEeeCCCeEEEEECCCC-ceeEEE
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSG-AQVAKL 350 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 350 (408)
.++..+.+|...+.. +.|||. ..+||+++.|-+++|||...+ ..+.+.
T Consensus 225 ------------------------~pl~eL~gh~~AVRk------vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~ 274 (311)
T KOG0277|consen 225 ------------------------TPLFELNGHGLAVRK------VKFSPHHASLLASASYDMTVRIWDPERQDSAIETV 274 (311)
T ss_pred ------------------------ccceeecCCceEEEE------EecCcchhhHhhhccccceEEecccccchhhhhhh
Confidence 557777888743332 245553 468999999999999999754 456677
Q ss_pred ccCCCCeeeeeEeCCC-CeEEeecCCCcEEEEee
Q 015371 351 DFHNAPVRDCCWHPIY-PMLISSSWDCNIVRWEI 383 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~ 383 (408)
..|+.-|..+.|++.. .++|+++.|+.++||+.
T Consensus 275 ~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccceEEeccccccccCceeeecccccceeeecc
Confidence 7899999999999864 49999999999999984
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-37 Score=239.59 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=225.3
Q ss_pred eEecCCccEEEeecCceEEEEE---EecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 7 VNYSGRGRFSAADSCHVLSRYL---PVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~~~~~---~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
+.||++|+++|+++.+...-+| +... ..++.||..+|.-+.||||.++|++|+.|..+.+||..++........
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 6899999999998776654444 3333 467889999999999999999999999999999999999976655433
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
. +...+.+++|.|||..+++|+.|+.+..||++............. .|.+++.++||+++++.+
T Consensus 310 ~--~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~--------------~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 310 G--LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDP--------------KVHDLAITYDGKYVLLVT 373 (519)
T ss_pred C--cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccc--------------eeEEEEEcCCCcEEEEEe
Confidence 3 455899999999999999999999999999987654333322221 499999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEE--Ee
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI--DS 238 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~--~~ 238 (408)
.|..|++++.++......+. ...+|++++.+ .+++++++.-.+..+++||+. ..+.+..+.||...-.-+ +|
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS-~d~k~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-EEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE----ENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred cccceeeechhhhhhhcccc-ccCceeEEEEc-CCCcEEEEEcccCeeEEeecc----hhhHHHHhhcccccceEEEecc
Confidence 99999999998876665554 46789999999 999999999999999999974 778888888988764433 34
Q ss_pred c-CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 239 R-RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 239 ~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
- .+..++++|++|+.|+||+..+ ++++..+.+|.. .+..+.|+
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~s----------------------------------gkll~~LsGHs~--~vNcVswN 491 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRIS----------------------------------GKLLAVLSGHSK--TVNCVSWN 491 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccC----------------------------------CceeEeecCCcc--eeeEEecC
Confidence 3 3557999999999999999988 788999999993 33344455
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
|+ +..++|+++.||+|+||....
T Consensus 492 P~---~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PA---DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CC---CHHHhhccCCCCeEEEecCCc
Confidence 54 567899999999999998653
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=223.82 Aligned_cols=276 Identities=18% Similarity=0.313 Sum_probs=232.6
Q ss_pred eeeEecCCccEEEeecCceEEEEEE----ecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLP----VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~----~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+.|+|+|.++++++.+...-+|. .+...++++|.++|..+.|.+|+..+++++.|.+++.||.++++.+.+
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--- 127 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK--- 127 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---
Confidence 4678999999999998877666665 344578999999999999999999999999999999999999977764
Q ss_pred cccceeeEEEEEeCCCC-ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 81 TKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
...|..-|+++.-+.-| .++.+++.|+++++||+.+.+......- ..+++++.|..++..+++|
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---------------kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---------------KYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---------------ceeEEEEEecccccceeec
Confidence 45566678888844434 4666888999999999987655332211 1259999999999999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCC----eEE
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG----ITF 235 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----i~~ 235 (408)
+-|+.|++||++.+.....+.+|..+|+.|..+ +++.++.+-+.|.++++||+|...+...++..+.+|... ...
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999999999999999999999999999999 899999999999999999999777777778888876543 457
Q ss_pred EEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEE
Q 015371 236 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 315 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
++|+|++..+..|+.|..+++||... ...+..+.+|.....
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~----------------------------------r~~lyklpGh~gsvn----- 312 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTS----------------------------------RRILYKLPGHYGSVN----- 312 (338)
T ss_pred eeccCCCCccccccccceEEEeeccc----------------------------------ccEEEEcCCcceeEE-----
Confidence 78999999999999999999999876 466778888884443
Q ss_pred eeccccCCCcEEEEeeCCCeEEEE
Q 015371 316 FSPEYSTAQKYIYTGSSDNSVYIY 339 (408)
Q Consensus 316 ~~~~~s~~~~~l~~~~~dg~i~vw 339 (408)
..+|+|...+|.+++.|.+|++=
T Consensus 313 -~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 313 -EVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred -EeeecCCCcEEEEeccCceeEee
Confidence 34788899999999999998864
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-37 Score=221.64 Aligned_cols=247 Identities=22% Similarity=0.320 Sum_probs=213.0
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
...++++|.++.|+-+|++.++++.|.+|++|+...+.. +..+..| ...|..++.+.|+..+++|+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--iktYsgh------------G~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKTYSGH------------GHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--eeeecCC------------CceeeeccccccccccccCC
Confidence 355677999999999999999999999999999987765 3344333 33799999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
.|..+.+||+++|+...++.+|.+.|+.+.|+ .+...+++|+.|.++++||.| ....++++.+......|.++...
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCR--S~s~ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCR--SRSFEPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcc--cCCCCccchhhhhcCceeEEEec-
Confidence 99999999999999999999999999999999 889999999999999999998 45778888898889999999987
Q ss_pred CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc
Q 015371 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (408)
+..|++|+.||+++.||++.+ +....+-+++ +.+..|
T Consensus 155 -~heIvaGS~DGtvRtydiR~G----------------------------------~l~sDy~g~p--------it~vs~ 191 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKG----------------------------------TLSSDYFGHP--------ITSVSF 191 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecc----------------------------------eeehhhcCCc--------ceeEEe
Confidence 667999999999999999983 3333333333 344579
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCee--eeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 321 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR--DCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++|++..++++.|+++++.|-.+|+.+..+++|.+.-. ..+++.....+++|++||.|++||+.....
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 99999999999999999999999999999999977543 456677777999999999999999987654
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=8.9e-38 Score=244.75 Aligned_cols=302 Identities=21% Similarity=0.292 Sum_probs=243.9
Q ss_pred CceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceE
Q 015371 21 CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL 100 (408)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 100 (408)
..++...+|......+..|.+.|..+.|-++...|++|+.|..|++|+...++ ........+..++|+++.|.++++.+
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 55566778888889999999999999999998999999999999999987664 22233444555689999999999999
Q ss_pred EEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec
Q 015371 101 VYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 180 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 180 (408)
++++.|+.+++|++...+. ...+..|.. .|+++.|......+++|+.|.+|+.||+....+..++-
T Consensus 235 iAas~d~~~r~Wnvd~~r~--~~TLsGHtd------------kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRL--RHTLSGHTD------------KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred EeecCCCceeeeeccchhh--hhhhccccc------------ceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 9999999999999987765 333444444 79999999877779999999999999999988777664
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
....+..+..+ ...+++|..|++|++||.| ..........+. .|+++..++++..+.+++.|.++.+.|++
T Consensus 301 -~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 301 -PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred -ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 34566777765 5678999999999999987 566666666554 99999999999999999999999999999
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
+... ...+........ .-.....|||++.|+++|+.||.|+||+
T Consensus 372 t~eI----------------------------------~~~~sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 372 TKEI----------------------------------RQTFSAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred cccE----------------------------------EEEeeccccccc--cccceeEECCCCceeeeccCCCcEEEEE
Confidence 8332 222221110000 0012235888999999999999999999
Q ss_pred CCCCceeEEEccCCC--CeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 341 LVSGAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
+.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 416 v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 416 VFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999988865444 599999999999999999999999993
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6e-35 Score=216.65 Aligned_cols=281 Identities=17% Similarity=0.246 Sum_probs=218.9
Q ss_pred ceeeEecCC-ccEEEeecCceEEEEEEecCc--eee-----ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE
Q 015371 4 GREVNYSGR-GRFSAADSCHVLSRYLPVNGP--WKV-----DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI 75 (408)
Q Consensus 4 ~~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~--~~l-----~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~ 75 (408)
.-.++|+|- |..+++++.+...+.+..... +.. .+|+..|.+++|+|.|++||+|+.|.++.||.-..+ ..
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-ef 95 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-EF 95 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-ce
Confidence 346899998 889999999999999887742 222 279999999999999999999999999999996654 34
Q ss_pred EEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC-ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 76 QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
.......+|+..|.+++|+++|++||+++.|+.|.+|.+..+ +......++. |...|..+.|+|...
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~------------HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE------------HTQDVKHVIWHPTED 163 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc------------ccccccEEEEcCCcc
Confidence 445567889999999999999999999999999999998743 3333333333 344799999999999
Q ss_pred EEEEEecCCeEEEEECC---CCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC
Q 015371 155 ELVAAGSDNFIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 231 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 231 (408)
+|++++.|.+|++|+-. .-++.+++.+|...|.+++|. +.+..|++++.|++++||... ...-..|..
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~--------~~~~~~~sr 234 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLY--------TDLSGMHSR 234 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeec--------cCcchhccc
Confidence 99999999999999876 336788999999999999999 889999999999999999853 111224778
Q ss_pred CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee-eeecccceee
Q 015371 232 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA-TYKGHSVLRT 310 (408)
Q Consensus 232 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (408)
.+..+.|. ...|++++.|+.|++|.-........ ...+. .-..|.. .
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~----------------------------~~l~~~~~~aHe~--d 282 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPS----------------------------WNLLAKKEGAHEV--D 282 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEecCCCCCch----------------------------HHHHHhhhccccc--c
Confidence 89999998 45799999999999997653111000 01111 2223432 2
Q ss_pred EEEEEeeccccC-CCcEEEEeeCCCeEEEEECC
Q 015371 311 LIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 311 ~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~~ 342 (408)
+... .|.| -.+.|++|+.||.|++|.+.
T Consensus 283 VNsV----~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 283 VNSV----QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceE----EEcCCCCCceeecCCCceEEEEEec
Confidence 2233 4555 36899999999999999874
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-36 Score=256.16 Aligned_cols=294 Identities=19% Similarity=0.273 Sum_probs=247.1
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
++..+..|..++|+|...+++++-..|.|++||.+-+..+.+ ..+|.++|..++|+|++.++++|+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 455678899999999999999999999999999987766554 45677799999999999999999999999999998
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
+.++ +..+..|-. -|..+.|++.-.+|++++.|.+|+||+..+++++..+.+|...|.|..|+ |.
T Consensus 82 ~rrc--lftL~GHlD------------YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-pt 146 (1202)
T KOG0292|consen 82 TRRC--LFTLLGHLD------------YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PT 146 (1202)
T ss_pred ccee--hhhhccccc------------eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-Cc
Confidence 7655 555555554 69999999999999999999999999999999999999999999999999 88
Q ss_pred CCEEEEecCCCeEEEEecccccc-------------------------CCccceeeecccCCeEEEEecCCCCeEEEeec
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFIS-------------------------KGRANGVLMGHLEGITFIDSRRDGRYFISNGK 250 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 250 (408)
.++++++|-|.+||+||+..... .......+.+|...|+.++|+|.-.+|++|+.
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 88999999999999999742110 01123457899999999999999999999999
Q ss_pred CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe
Q 015371 251 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 330 (408)
Q Consensus 251 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 330 (408)
|..|++|.++..+ .-.+.+..+|...... .-|+|..++|++.
T Consensus 227 DRqVKlWrmnetK--------------------------------aWEvDtcrgH~nnVss------vlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 227 DRQVKLWRMNETK--------------------------------AWEVDTCRGHYNNVSS------VLFHPHQDLILSN 268 (1202)
T ss_pred cceeeEEEecccc--------------------------------ceeehhhhcccCCcce------EEecCccceeEec
Confidence 9999999987622 1224455666643332 2467778999999
Q ss_pred eCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 331 SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
++|++|+|||+.....+++++...+..+.++-+|..+++++| .|+-+.+|.++..
T Consensus 269 sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 999999999999999999998778899999999999877765 5666778877643
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-34 Score=217.52 Aligned_cols=296 Identities=18% Similarity=0.295 Sum_probs=234.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec--CcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI--CAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~ 111 (408)
..+..-.+.|.++.|+++|.+|++++.|.+++|||..++.....+...+ ..+..++|......++.++. |.+||.
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccccEEEEecCCceEEEccCCCCCceEE
Confidence 3455567899999999999999999999999999999997776554433 26888899887777777765 889999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
.++.+.+. +..+.+|+. .|.+++.+|-+..+++++.|++|++||++..++...+.... -...+|
T Consensus 85 Lsl~dNky--lRYF~GH~~------------~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~Af 148 (311)
T KOG1446|consen 85 LSLHDNKY--LRYFPGHKK------------RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAF 148 (311)
T ss_pred EEeecCce--EEEcCCCCc------------eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeE
Confidence 99988876 555556655 79999999988999999999999999999888877775433 345677
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeee-cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
. |.|-++|++.....|++||+|......-....+. +.....+.+.|+|||++++.+...+.+++.|.-.
T Consensus 149 D-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~--------- 218 (311)
T KOG1446|consen 149 D-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD--------- 218 (311)
T ss_pred C-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC---------
Confidence 7 8999999999888999999995432222222222 3466789999999999999999999999999876
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
+..+..+..+....... .+..|+||++++++|+.||+|.+|++++++.+..+
T Consensus 219 -------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 219 -------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred -------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 44455555554333221 33468899999999999999999999999999999
Q ss_pred cc-CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 351 DF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 351 ~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++ +.+++.++.|+|...+++|++ ..+.+|=....+.
T Consensus 271 ~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 271 RGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL 307 (311)
T ss_pred cCCCCCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence 88 688999999999877777764 5788886654433
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-35 Score=228.62 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=231.4
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC---CceEEEeecCcEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICAIVN 110 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~ 110 (408)
..-.-|.+.|.++... ++.+++|+.||.+++|+.... ... ...+|.++|.+++|.-. ...+++++.|.+++
T Consensus 99 l~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred cccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 3344689999999988 789999999999999997654 333 34567778998888543 34699999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC------------------
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA------------------ 172 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------------ 172 (408)
+|.++.++........ ..+|..+|.++...++|..+++|+.|..|.+|+.++
T Consensus 173 Lw~~~~~~~~~~~~~~----------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKV----------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEEecCchhhhhHHhH----------hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 9999877643222111 114666899999999999999999999999999321
Q ss_pred -------CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeE
Q 015371 173 -------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 245 (408)
Q Consensus 173 -------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 245 (408)
+.++..+.+|..+|.++.|+ + ...+++++.|.+|+.||+. .+.....+.+ ...+.++..+|..++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccccee
Confidence 23455678999999999998 3 7789999999999999975 6666665553 5678999999999999
Q ss_pred EEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-CC
Q 015371 246 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQ 324 (408)
Q Consensus 246 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~ 324 (408)
++|+.|..+++||.++... .-....+.+|..... +..|+| +.
T Consensus 316 ~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~nwVs------svkwsp~~~ 358 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKNWVS------SVKWSPTNE 358 (423)
T ss_pred eecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchhhhh------heecCCCCc
Confidence 9999999999999998431 123466778875333 224555 45
Q ss_pred cEEEEeeCCCeEEEEECCCCc-eeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 325 KYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
..|++|+.|+++++||+++.+ ++..+.+|...|.++.|+. +..+++||.|.+|+|+.-..
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence 678899999999999999987 9999999999999999975 56899999999999987543
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-36 Score=255.36 Aligned_cols=308 Identities=14% Similarity=0.185 Sum_probs=207.4
Q ss_pred eeee-cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEe--CCCCceEEEeecCcEEE
Q 015371 34 WKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--SPDQRFLVYASICAIVN 110 (408)
Q Consensus 34 ~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~ 110 (408)
+.+. .|.+.|+++.||+||+|||+||.|+.|+||.+...+....... .-.++.+ ..++....+.+..+.+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~------~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEG------DSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhccccc------ccchhhhhhhhccccCcccccccccc
Confidence 4456 8999999999999999999999999999999876433111000 1111111 11111111111110000
Q ss_pred EE--ECCCCceeeeeeeeeeeeeeee----cCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCC
Q 015371 111 IV--DVGSSARESLANVTIHKGLDFS----ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184 (408)
Q Consensus 111 ~w--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 184 (408)
-- ..++.....- .....+...|. ....+|...|.++.|+.++ +|++++.|.+|++|++...+++..|. |..
T Consensus 334 ~~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred ccccccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 00 0000000000 00000111111 1224677799999999765 89999999999999999999999887 999
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
.|+|++|+|.|.++|++|+-||.||||++ ....+..+..-..-|++++|.|||+..++|+.+|.+++|+......
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI-----~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSI-----SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeec-----CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 99999999999999999999999999997 3445555555668999999999999999999999999999987433
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeecccc-eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
..... +..-.+... ...+....+.+. +...+++.+.|..|+|||.++
T Consensus 486 ~~~~~-----------------------------I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 486 VSDFH-----------------------------IRLHNKKKKQGKRITGLQFFPG---DPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred EEeee-----------------------------EeeccCccccCceeeeeEecCC---CCCeEEEecCCCceEEEeccc
Confidence 22210 000000000 012222222221 233678888999999999999
Q ss_pred CceeEEEccCCC--CeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 344 GAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 344 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.+++..++++.. .=....|+.||++|+++++|..|++|++....
T Consensus 534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 534 KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 999999987643 33456899999999999999999999986544
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.5e-37 Score=236.08 Aligned_cols=241 Identities=22% Similarity=0.354 Sum_probs=205.0
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
...|.|+.+ |...+++|..|.+|++||..+... ...+.+|.+ .|.|+.|. .+.+++|+.|.+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c--~~~L~GHtG------------SVLCLqyd--~rviisGSSDsT 258 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC--LKILTGHTG------------SVLCLQYD--ERVIVSGSSDST 258 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHH--HHhhhcCCC------------cEEeeecc--ceEEEecCCCce
Confidence 346999888 567799999999999999977654 334444444 89999985 568999999999
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 244 (408)
|++||.++++++.++-+|...|..+.|+ +.++++++.|.++.+||+.... .-.....+.+|...|+.+.|+ .++
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~ky 332 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKY 332 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cce
Confidence 9999999999999999999999999998 6799999999999999986322 234556788999999999996 669
Q ss_pred EEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC
Q 015371 245 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 324 (408)
Q Consensus 245 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 324 (408)
+++++.|.+|++|++.+ ...+.++.+|.....+. .+ .+
T Consensus 333 IVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIACl------QY--r~ 370 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIACL------QY--RD 370 (499)
T ss_pred EEEecCCceEEEEeccc----------------------------------eeeehhhhcccccceeh------hc--cC
Confidence 99999999999999988 57788888888443332 22 48
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCCccc
Q 015371 325 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 393 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 393 (408)
+++++|+.|.+|++||+..|.++..+++|+.-|.++.|. .+.+++|+.||+|++||+..+..+..+.
T Consensus 371 rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccc
Confidence 999999999999999999999999999999999999995 5689999999999999999987765544
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=244.63 Aligned_cols=250 Identities=19% Similarity=0.286 Sum_probs=220.3
Q ss_pred ceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC
Q 015371 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 163 (408)
Q Consensus 84 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (408)
+...|.++.|+|....++++-.+|.|.||+.++........ .... ||.+..|-+..+++++|+.|.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe--V~~~------------PvRa~kfiaRknWiv~GsDD~ 77 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE--VSEV------------PVRAAKFIARKNWIVTGSDDM 77 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee--eccc------------chhhheeeeccceEEEecCCc
Confidence 44589999999999999999999999999998876643333 3322 799999999999999999999
Q ss_pred eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CC
Q 015371 164 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DG 242 (408)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 242 (408)
.|++|+..+++.+..+.+|...|++++.+ |...+++++|.|-+|++||.. ....+.+++.+|..-|.+++|+| |.
T Consensus 78 ~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred eEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCCCc
Confidence 99999999999999999999999999999 778899999999999999985 46788899999999999999999 56
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
+.+++++-|++|++|.+.. ..+..++++|.....++..... +
T Consensus 154 ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~~----g 195 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYTG----G 195 (794)
T ss_pred cceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEeccC----C
Confidence 7899999999999999987 4667888899866665533222 2
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
|..||++|+.|..|+|||.++..+++++.+|...|..+.|+|.-++++|||+||+|+||+-.+-+.+
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 4579999999999999999999999999999999999999999999999999999999998775443
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.5e-34 Score=236.07 Aligned_cols=275 Identities=25% Similarity=0.413 Sum_probs=224.1
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec---CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN---GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|+|+++++++++.+....++... ....+.+|...+.++.|+|++++|++++.||.|++|++.++.......
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~- 90 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT- 90 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe-
Confidence 4689999999998887755555555443 346778999999999999999999999999999999998864444333
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
.|...|.++.|+|+++++++++.++.+.+||+.+.+... .+.. |...+.++.|+|++.++++++
T Consensus 91 --~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~------------~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 91 --GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT--TLRG------------HTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred --ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE--Eecc------------CCCcEEEEEEcCcCCEEEEEc
Confidence 455579999999998888888889999999998654422 2222 233699999999998888888
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
.++.|++||+++++....+..|...+.+++|+ ++++.+++++.|+.|++||++ .......+..|...+.++.|+|
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECC----CCceecchhhcCCceEEEEEcC
Confidence 79999999999898888888899999999999 788888888889999999975 4666677778888999999999
Q ss_pred CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc
Q 015371 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (408)
++.++++++.|+.+++||+.+ ......+..+.. .+..++|
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~----------------------------------~~~~~~~~~~~~------~i~~~~~ 269 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRT----------------------------------GECVQTLSGHTN------SVTSLAW 269 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCC----------------------------------ceeEEEccccCC------cEEEEEE
Confidence 988888888899999999986 234444444442 2344578
Q ss_pred cCCCcEEEEeeCCCeEEEEE
Q 015371 321 STAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd 340 (408)
++++++|++++.||.|++|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 88899999999999999996
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-33 Score=263.10 Aligned_cols=289 Identities=16% Similarity=0.203 Sum_probs=220.4
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC----------ceeeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCC
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG----------PWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKN 72 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~ 72 (408)
..+++|+|||.++++++.+....+|.... +.....+...|.+++|+| ++.+||+++.||+|++||+.++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 46799999999999988888777776432 111123456799999987 4789999999999999999887
Q ss_pred eeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc-
Q 015371 73 WKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS- 150 (408)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 150 (408)
..+.. ...|...|.+++|+| ++.+|++++.||.|++||+.++.... .+..+ ..+.++.|+
T Consensus 566 ~~~~~---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~--~~~~~-------------~~v~~v~~~~ 627 (793)
T PLN00181 566 QLVTE---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG--TIKTK-------------ANICCVQFPS 627 (793)
T ss_pred eEEEE---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE--EEecC-------------CCeEEEEEeC
Confidence 55543 345777899999997 78999999999999999998765422 22211 158899995
Q ss_pred CCCCEEEEEecCCeEEEEECCCCc-ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccc--cCCccceeee
Q 015371 151 TDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--SKGRANGVLM 227 (408)
Q Consensus 151 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 227 (408)
+++.+|++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.+|++++.|++|++||++... .....+..+.
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 579999999999999999998765 466778899999999996 56789999999999999986321 1235677889
Q ss_pred cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee--eeecc
Q 015371 228 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA--TYKGH 305 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 305 (408)
+|...+..+.|+|++.+|++|+.|+.|++|+............ .....+. ....+
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~-----------------------~~~~~~~~~~~~~~ 762 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF-----------------------KTIDPVSGLEVDDA 762 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec-----------------------ccCCcccccccCCC
Confidence 9999999999999999999999999999999765221100000 0000000 01111
Q ss_pred cceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 306 SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
. ..+.+.+|+|++.+|++|+.||.|++|++
T Consensus 763 ~------~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 763 S------QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred C------cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1 24556678889999999999999999996
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=232.26 Aligned_cols=293 Identities=19% Similarity=0.234 Sum_probs=230.8
Q ss_pred eeecccCceeEEEEcCCCCe-EEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSF-FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.+..-.+.|.+++|||...+ +|+.+. -.+.||+..+......+..... .+.++.|-.||++|++|...|.|+++|
T Consensus 21 ~~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~---~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKD---VVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred ccccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhcc---ceeEEEeecCCeEEEccCCcCcEEEec
Confidence 34444567999999996543 454443 3699999877654444433333 799999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
..+. ..+..+..| +.++..+.|+| ++..+++|+.|+.+++||+.+......+.+|+..|.|.+|+
T Consensus 97 ~k~r--~iLR~~~ah------------~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 97 MKSR--VILRQLYAH------------QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred cccH--HHHHHHhhc------------cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 5442 223344444 44899999999 55677788889999999999988766889999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
|.++.++++|+.||+|++||+|. ....+..+ .|..+|..+.+-|.|..+++++. ..+++||+.++
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~---~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G---------- 227 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRS---LTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG---------- 227 (487)
T ss_pred cCCCeEEEecCCCceEEEEEecc---CCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC----------
Confidence 88889999999999999999982 22444444 58999999999999999999874 57999999863
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
++.+..+..|....++ +.+..++..|++|+-|+.|++||+.+.+.++.+.
T Consensus 228 -----------------------~qll~~~~~H~KtVTc------L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~- 277 (487)
T KOG0310|consen 228 -----------------------GQLLTSMFNHNKTVTC------LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK- 277 (487)
T ss_pred -----------------------ceehhhhhcccceEEE------EEeecCCceEeecccccceEEEEccceEEEEeee-
Confidence 2344444446644443 3566678999999999999999998999999887
Q ss_pred CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 353 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
-.++|.+++.+|+++.++.|-.||.+.+=+....+++.
T Consensus 278 ~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s 315 (487)
T KOG0310|consen 278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPS 315 (487)
T ss_pred cccceeeEEecCCCceEEEecccceeeeehhhcccCCC
Confidence 57899999999999999999999999887665554443
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=229.31 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=230.9
Q ss_pred eeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+... ...|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEEecc--cceEEecCCcceeeee
Confidence 578999999999999987 7899999999999999988765554 455666899999986 6788999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
++.. ....+.... .+..+.-+..+..+++++ ..|.|||.+...++..+.-....|.++.|+|
T Consensus 136 ~~~~---p~~tilg~s-------------~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 136 IDGP---PLHTILGKS-------------VYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred ccCC---cceeeeccc-------------cccccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCC
Confidence 8763 222222221 366666666677788876 4699999999999999987788999999998
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
....+|+++..|+.|.+||+| ...++.... ....-+.|+|+|.+-.|+++++|..++.||++...
T Consensus 198 vETsILas~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---------- 262 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---------- 262 (433)
T ss_pred CcchheeeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehhhhhhc----------
Confidence 888899999999999999998 444444332 23345789999988889999999999999999843
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc-c
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-F 352 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~ 352 (408)
.++....+|. ..+.+++|||.|+-+++|+.|.+|+||..+.+.....+. .
T Consensus 263 -----------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 263 -----------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred -----------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 5566667776 556677999999999999999999999998775443331 1
Q ss_pred CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 353 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
....|.++.||.|.+++++||.|+.|++|.....++
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 235699999999999999999999999999876544
No 64
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=217.39 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=223.7
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-----eEEEecccccceeeEEEEEeCCCCceEEEee-cCcE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-----KIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAI 108 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 108 (408)
.|+||.+.|++++|+.||++|||++.|++|+||++++-. .+...... . ..+.+.|.||.+-+++.. ....
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-d---hpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-D---HPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-C---CceEEEECCCcceEEEEEccCCE
Confidence 588999999999999999999999999999999987632 12211222 1 467899999988776554 4557
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceE
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 188 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 188 (408)
+++|.+...+.-.......+ .......+.|...+..+-...++++|++++.|..|.+|+++ |+.+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~--~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVH--IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCccccc--ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 99998754322110000000 00111223456678888888899999999999999999998 8888888777777788
Q ss_pred EEEecCCCCEEEEecCCCeEEEEecccc----ccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCF----ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
.+.+ |+|+++++++..--|++|.+-.. ..+-..+..+.+|...|..++|+++...+++.+.||++++||++-...
T Consensus 234 aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 234 AAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 8888 99999999999999999986310 123345667899999999999999999999999999999999875322
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeee--ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
..... ..+... ..+....... .++++|+|+.||.+. ...+++|..+
T Consensus 313 ~~qDp---------------------------k~Lk~g~~pl~aag~~p~----RL~lsP~g~~lA~s~-gs~l~~~~se 360 (420)
T KOG2096|consen 313 AGQDP---------------------------KILKEGSAPLHAAGSEPV----RLELSPSGDSLAVSF-GSDLKVFASE 360 (420)
T ss_pred cCCCc---------------------------hHhhcCCcchhhcCCCce----EEEeCCCCcEEEeec-CCceEEEEcc
Confidence 21111 111111 1111111111 336778899888765 4469999999
Q ss_pred CCceeEEE-ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 343 SGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 343 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
+++...++ ..|...|++++|+++|++++|++ |..+++..
T Consensus 361 ~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 361 DGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99877776 47899999999999999999987 66788775
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=7.1e-34 Score=245.32 Aligned_cols=286 Identities=21% Similarity=0.306 Sum_probs=241.4
Q ss_pred ceeeec-ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 33 PWKVDG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 33 ~~~l~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
...+.+ |...+.+..|. ..++++++.|++|++|+..++..+.. ...+|.+.|.++++..-+..|++|+.|.++++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 344554 56778899998 56799999999999999988765553 35678889999999888899999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
||..+++.... +..|.. .+.++... ...+++|+.|.+|++|+++++..+..+.+|..+|.++..
T Consensus 276 Wd~~sg~C~~~--l~gh~s------------tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 276 WDCSTGECTHS--LQGHTS------------SVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred EecCCCcEEEE--ecCCCc------------eEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 99999887443 334443 57777664 456888899999999999999999999999999999998
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 271 (408)
+ +.++++|+.|++|++||++ ..+++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 340 ~---~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-------- 403 (537)
T KOG0274|consen 340 D---EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-------- 403 (537)
T ss_pred c---CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------
Confidence 6 8899999999999999975 89999999999999999988755 889999999999999999821
Q ss_pred cccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 015371 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (408)
+++.++.+|..... .+...+++|++++.||.|++||..+++++..+.
T Consensus 404 -------------------------~c~~tl~~h~~~v~--------~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 404 -------------------------KCIHTLQGHTSLVS--------SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred -------------------------hhhhhhcCCccccc--------ccccccceeEeccccccEEEeecccCceeeeec
Confidence 56777788775442 223358899999999999999999999999999
Q ss_pred c-CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 352 F-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 352 ~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
+ |...|+.+++. ...+++++.||.+++||++++...
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8 67889988886 457889999999999999987653
No 66
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=219.36 Aligned_cols=305 Identities=20% Similarity=0.297 Sum_probs=241.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.||.+.|+.++.......+.+++.|.+.+||.++++.++.+ ..+|.+.|++++|++.+.++++++.|++..||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 35779999999999988888999999999999999999987765 556777999999999999999999999999997
Q ss_pred CC------CCc--------eeeeee------------eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEE
Q 015371 114 VG------SSA--------RESLAN------------VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 167 (408)
Q Consensus 114 ~~------~~~--------~~~~~~------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 167 (408)
.. ... .+.... ...+.-........+|...|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 21 100 000000 0000000111122457778889999999999999999999999
Q ss_pred EECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEE
Q 015371 168 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 168 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
||+++++.+..+.+|....+.++-+ |..+++++++.|.+.++||+| +.-..+..+.+|...|+++.|..+.+ +++
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd~-vVS 373 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDDR-VVS 373 (481)
T ss_pred eeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCCc-eee
Confidence 9999999999999999999999988 889999999999999999997 45567788999999999999997655 899
Q ss_pred eecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEE
Q 015371 248 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327 (408)
Q Consensus 248 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 327 (408)
|+.|.+|++||++++. .++.++........ ++.+..+..|
T Consensus 374 gSDDrTvKvWdLrNMR---------------------------------splATIRtdS~~NR-------vavs~g~~iI 413 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMR---------------------------------SPLATIRTDSPANR-------VAVSKGHPII 413 (481)
T ss_pred cCCCceEEEeeecccc---------------------------------CcceeeecCCccce-------eEeecCCceE
Confidence 9999999999999854 34444444332222 1344456788
Q ss_pred EEeeCCCeEEEEECCCCceeEEE-----ccCCCCeeeeeEeCCCC--eEEeecCCCcEEEEeeCCCC
Q 015371 328 YTGSSDNSVYIYDLVSGAQVAKL-----DFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~~ 387 (408)
+.--.+..|++||+. |..+..+ ++|...|+|++|..+.. -|++++-|..+.=|+++...
T Consensus 414 AiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred EeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 888889999999995 4443333 58999999999987654 68899999999999997643
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-33 Score=240.61 Aligned_cols=241 Identities=18% Similarity=0.239 Sum_probs=203.4
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
+-+.++|.|..-++.++-...+.++|+..- ..++.+|.++|..++|+|++.++++||.|..|+||+..+.+++.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf--- 87 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF--- 87 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---
Confidence 346789999998988877777677776543 45788999999999999999999999999999999998876654
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
...+|..-|..+.|++.-.+|++++.|.+|+||+..+.+.... +.+|.- -|.|.+|+|....++++
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnH------------YVMcAqFhptEDlIVSa 153 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNH------------YVMCAQFHPTEDLIVSA 153 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE--EecCce------------EEEeeccCCccceEEEe
Confidence 4556777999999999999999999999999999998877444 334333 69999999999999999
Q ss_pred ecCCeEEEEECCCCc-----------------------------ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEE
Q 015371 160 GSDNFIYVYDLQANK-----------------------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 210 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~i 210 (408)
+-|.+|++||+..-+ ....+.+|...|+-++|+ |.-.+|++|+.|+.|++
T Consensus 154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKL 232 (1202)
T ss_pred cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeE
Confidence 999999999985210 123457899999999999 77789999999999999
Q ss_pred EeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCc
Q 015371 211 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 211 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 263 (408)
|.+. ....-.+.+..+|.+.|.++-|+|..+++++.++|+.|++||+....
T Consensus 233 Wrmn--etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 233 WRMN--ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EEec--cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 9976 33344556788999999999999999999999999999999998843
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-32 Score=197.49 Aligned_cols=290 Identities=20% Similarity=0.291 Sum_probs=228.5
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee------------EEEecccccceeeEEEEEeCCCCceEEEee
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK------------IQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 104 (408)
......|.+++|+|.|.+.|+|+...+++|-....-.. .......+.|.+.|.|.+|+|+|++|++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 34567899999999999999999999999876532110 111223456788999999999999999999
Q ss_pred cCcEEEEEECCCCcee---eeeeeeeeeeeeeecCCCCCccceEEEEEcCC----CCEEEEEec-CCeEEEEECCCCcce
Q 015371 105 ICAIVNIVDVGSSARE---SLANVTIHKGLDFSADGDEDEFGIFSVKFSTD----GQELVAAGS-DNFIYVYDLQANKCS 176 (408)
Q Consensus 105 ~dg~i~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~-dg~i~i~d~~~~~~~ 176 (408)
.|.+|++..++..... ....+..|. ..|..++|..+ +..|++++. |-.|++-|...|+..
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhd------------gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHD------------GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecC------------CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 9999999877654332 122333443 37999999653 456666654 667888899999999
Q ss_pred eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee----c---ccCCeEEEEecCCCCeEEEee
Q 015371 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----G---HLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 177 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~l~~~~ 249 (408)
..+.+|++.|.++- + -++-++++|+.|.+|++||+| ....+.++. + ....|.+++..|.|++|++|-
T Consensus 177 ~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 177 HALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred eeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99999999998873 2 458899999999999999998 333333332 1 236789999999999999999
Q ss_pred cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE
Q 015371 250 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 329 (408)
Q Consensus 250 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 329 (408)
.|....+||++. +++++.+..|.....++ .|||...|+++
T Consensus 251 ~dssc~lydirg----------------------------------~r~iq~f~phsadir~v------rfsp~a~yllt 290 (350)
T KOG0641|consen 251 ADSSCMLYDIRG----------------------------------GRMIQRFHPHSADIRCV------RFSPGAHYLLT 290 (350)
T ss_pred CCCceEEEEeeC----------------------------------CceeeeeCCCccceeEE------EeCCCceEEEE
Confidence 999999999998 67788888888555444 68888999999
Q ss_pred eeCCCeEEEEECCCC----ceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 330 GSSDNSVYIYDLVSG----AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 330 ~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
++.|..|++-|++.. -.+.....|+..+..+.|+|..--+++.+.|.++.+|-++
T Consensus 291 ~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999998632 1234445688888899999998889999999999999875
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=234.32 Aligned_cols=281 Identities=16% Similarity=0.219 Sum_probs=224.5
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee
Q 015371 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
-+.|+. .+.||+|.. ..|++|+..++. +..+.... ...|+++.|+++|.+|++|..+|.|.|||....+... .
T Consensus 182 lldWss-~n~laValg-~~vylW~~~s~~-v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--~ 254 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVALG-QSVYLWSASSGS-VTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--T 254 (484)
T ss_pred Hhhccc-CCeEEEEec-ceEEEEecCCCc-eEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--c
Confidence 367774 456777754 479999988874 33333332 5589999999999999999999999999997765432 2
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceee-ecCcCCCceEEEEecCCCCEEEEec
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
+.. .|...|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..++|+ +++.++++|+
T Consensus 255 ~~~-----------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGg 320 (484)
T KOG0305|consen 255 LRG-----------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGG 320 (484)
T ss_pred ccC-----------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCC
Confidence 222 033479999997 66799999999999999998876665 88999999999999 9999999999
Q ss_pred CCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEee--cCCeEEEEeCCCCcCccccccccccccccce
Q 015371 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 280 (408)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 280 (408)
.|+.+.|||.. ...+...+..|...|.+++|+| ...+||+|+ .|++|++||..++.
T Consensus 321 nDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~----------------- 379 (484)
T KOG0305|consen 321 NDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA----------------- 379 (484)
T ss_pred CccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----------------
Confidence 99999999963 7788889999999999999999 456788765 49999999998733
Q ss_pred eecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE--eeCCCeEEEEECCCCceeEEEccCCCCee
Q 015371 281 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDNSVYIYDLVSGAQVAKLDFHNAPVR 358 (408)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (408)
.+....... .+.++.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|.
T Consensus 380 -----------------~i~~vdtgs-------QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl 435 (484)
T KOG0305|consen 380 -----------------RIDSVDTGS-------QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVL 435 (484)
T ss_pred -----------------EecccccCC-------ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeE
Confidence 333322222 2334456666765655 44577899999999999999999999999
Q ss_pred eeeEeCCCCeEEeecCCCcEEEEeeCCCCCCCc
Q 015371 359 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL 391 (408)
Q Consensus 359 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 391 (408)
.++++|||..+++|+.|.++++|++-...+.+.
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred EEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence 999999999999999999999999988644433
No 70
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-33 Score=212.63 Aligned_cols=299 Identities=16% Similarity=0.259 Sum_probs=231.4
Q ss_pred eeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCe------------eEEEecccccceeeEEEEEeCC-CCceE
Q 015371 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNW------------KIQKDIETKALRWTITDTSLSP-DQRFL 100 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~-~~~~l 100 (408)
....|.+.|+++.+.+ .|+|+++|+.||.|.+||++... ++........|...|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4557999999999988 68999999999999999997642 1112234456788999999999 66788
Q ss_pred EEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC---CCCEEEEEecCCeEEEEECCCCccee
Q 015371 101 VYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQANKCSL 177 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~ 177 (408)
.+++.|.++++||..+.+....+.++. .|.+-+++| ...++++|..+-.|++.|+.+|....
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~---------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEG---------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCc---------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 889999999999999877644443332 388888888 34578888889999999999999999
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccc-----------cCCccceeeecccCCeEEEEecCCCCeEE
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI-----------SKGRANGVLMGHLEGITFIDSRRDGRYFI 246 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 246 (408)
.+.+|...|.++.|+|...-.|++|+.||.|++||+|... .....++.-..|.+.+..++|..++.+++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 9999999999999998888889999999999999998421 11122223456889999999999999999
Q ss_pred EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 247 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+++.|..+++|+..++........ +....-..+.... + . +.+...
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~g--------------------------~~~~n~~~~~~~~-----~---~-~~~s~v 307 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREFG--------------------------PIIHNQTTSFAVH-----I---Q-SMDSDV 307 (397)
T ss_pred hccCccceEEeecccCcccccccc--------------------------cccccccccceEE-----E---e-ecccce
Confidence 999999999999988653322211 1111101110000 0 0 112333
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
++.--.++.+.++++-.++.+..+..|-..|.+.++-|+-+.+.+++.|+.|..|..
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 444445688999999999999999999889999999999999999999999999987
No 71
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.7e-33 Score=238.46 Aligned_cols=274 Identities=18% Similarity=0.232 Sum_probs=209.3
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe----------cccccceeeEEEEEeCC-CCceEEEeecC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD----------IETKALRWTITDTSLSP-DQRFLVYASIC 106 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 106 (408)
.|-..|.....++|+..+++++.+.....|+...+..+... ....+|.+.|.+++|+| ++++|++++.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 45566777788888777888888888888886554332211 12456888999999999 88999999999
Q ss_pred cEEEEEECCCCcee-----eeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcceeeec
Q 015371 107 AIVNIVDVGSSARE-----SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIP 180 (408)
Q Consensus 107 g~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~ 180 (408)
++|++||+.+.... ....+ .+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+.
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L------------~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL------------QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe------------cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 99999999765321 11112 2455589999999975 689999999999999999999888999
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCC-eEEEEecCCCCeEEEee----cCCeEE
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG-ITFIDSRRDGRYFISNG----KDQTTK 255 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~d~~i~ 255 (408)
+|...|.+++|+ +++.+|++++.|++|++||++ .++.+..+.+|.+. ...+.|.+++..+++++ .|+.|+
T Consensus 166 ~h~~~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 166 CHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCCCceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 999999999999 899999999999999999987 56677778888765 44677888888887754 478999
Q ss_pred EEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCC
Q 015371 256 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDN 334 (408)
Q Consensus 256 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg 334 (408)
+||+++.. .++.....+.. .....+.|++++++|++++ .|+
T Consensus 241 lWDlr~~~---------------------------------~p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 241 LWDTRKMA---------------------------------SPYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EEeCCCCC---------------------------------CceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCC
Confidence 99998732 11222111111 1223456788899999887 599
Q ss_pred eEEEEECCCCceeEEEcc-CCCCeeeeeEeCCC
Q 015371 335 SVYIYDLVSGAQVAKLDF-HNAPVRDCCWHPIY 366 (408)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~ 366 (408)
.|++||+.+++.+..... +..++..++|.|..
T Consensus 283 ~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 283 NIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 999999999988776643 45578888888853
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.3e-33 Score=247.41 Aligned_cols=309 Identities=17% Similarity=0.190 Sum_probs=230.3
Q ss_pred ecccCceeEEEEcCCCCeEEEEe--CCCcEEEEEcCCC--------e-eEEEecccccceeeEEEEEeCCCCceEEEeec
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKN--------W-KIQKDIETKALRWTITDTSLSPDQRFLVYASI 105 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~--------~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 105 (408)
..++..|.+++.+|||..+|||+ .|+.++||+.+.- + ..........|.+.|+|+.|+|||++||+|+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34456799999999999999999 8999999997531 1 11122334567889999999999999999999
Q ss_pred CcEEEEEECCCCceeeee----eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC
Q 015371 106 CAIVNIVDVGSSARESLA----NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 181 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 181 (408)
|+.|.+|+.......... .......-.......+|...|..++|+|++.+|++++.|+.|.+|+..+.+.+..+.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 999999998731000000 0000111111122245777899999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc------cCCeEEEEecCCCCeEEEeec----C
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDGRYFISNGK----D 251 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d 251 (408)
|.+.|..+.|. |-|++|++-+.|++|++|++. .....+.+.++ ...+..+.|+|||.+|++... -
T Consensus 170 H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 170 HQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred ccccccceEEC-CccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 99999999999 899999999999999999954 34444444443 234678999999999998643 2
Q ss_pred CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc---------C
Q 015371 252 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS---------T 322 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---------~ 322 (408)
..+.|.+-.+ .+.-..+-+|.....+. .|+|.+= .
T Consensus 245 ~~~~IieR~t----------------------------------Wk~~~~LvGH~~p~evv--rFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 245 STIAIIERGT----------------------------------WKVDKDLVGHSAPVEVV--RFNPKLFERNNKNGTST 288 (942)
T ss_pred ceeEEEecCC----------------------------------ceeeeeeecCCCceEEE--EeChHHhccccccCCcc
Confidence 2455655443 33345566666544333 3333221 0
Q ss_pred CC----cEEEEeeCCCeEEEEECCCCceeEEEc-cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 323 AQ----KYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 323 ~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.. ..+|+|+.|++|.||.....+++.... -....|.+++|+|||-.|+.+|.||+|.+..++..
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 168899999999999998777776553 34678999999999999999999999999999763
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5e-33 Score=215.98 Aligned_cols=285 Identities=18% Similarity=0.266 Sum_probs=225.3
Q ss_pred ccEEEeecCceEEEEEEecCc--eeeecccCceeEEEEcCCC---CeEEEEeCCCcEEEEEcCCCeeEEE-eccccccee
Q 015371 13 GRFSAADSCHVLSRYLPVNGP--WKVDGMNSRVYTSQFSNDG---SFFVAASQESNIKVYNVDKNWKIQK-DIETKALRW 86 (408)
Q Consensus 13 g~~~~~~~~~~~~~~~~~~~~--~~l~~h~~~v~~~~~s~~~---~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~ 86 (408)
++++.++..+.+.+.|..... ..+.||.++|.+++|-... ..|++++.|.++++|.++.+..... .....+|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 578889999999999987664 5678999999988885433 4599999999999999987754332 223458999
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeee-----------eeeeeeecCCCCCccceEEEEEcCCCCE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTI-----------HKGLDFSADGDEDEFGIFSVKFSTDGQE 155 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (408)
.|.++...+++..+++|+.|..+.+|+.+............ ...........+|..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 99999999999999999999999999954332222211111 001112223367888999999998 667
Q ss_pred EEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
+++++.|.+|+.||++++..+..+.+ ...++|+.++ +..++|++|+.|..+++||.|.. ........+.+|.+.|.+
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhh
Confidence 99999999999999999998888874 6789999999 78999999999999999999854 344556778999999999
Q ss_pred EEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 236 IDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 236 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+.|+|.. .+|++++.|+++++||+|.. ..++..+.+|.. -
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~---------------------------------k~plydI~~h~D------K 391 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRST---------------------------------KAPLYDIAGHND------K 391 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccC---------------------------------CCcceeeccCCc------e
Confidence 9999965 46899999999999999983 246777777752 3
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
+++..|.. +.+|++|+.|.+|+++..
T Consensus 392 vl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEeccC-CceEEeccCcceEEEecc
Confidence 34445553 779999999999999864
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=206.25 Aligned_cols=245 Identities=16% Similarity=0.265 Sum_probs=197.0
Q ss_pred ccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCC
Q 015371 39 MNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (408)
Q Consensus 39 h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~ 116 (408)
-.+.+..++|+++ .+.+++++.||+++|||+... ...+...++|...|.++.|++ +.+.+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 3578999999996 467888999999999995443 334556778888999999998 566778889999999999876
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
++. +.++..+.. -|...+|+| ..+.+++++.|+.+++||++.......+..|...|.|+.|+.-+
T Consensus 137 ~~S--v~Tf~gh~~------------~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 137 PNS--VQTFNGHNS------------CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN 202 (311)
T ss_pred Ccc--eEeecCCcc------------EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC
Confidence 654 344444444 699999999 67899999999999999998655555589999999999999888
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCcccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
.+++++|+.|+.|+.||+|+ -..++..+.+|.-.|..+.|+|.. ..|++++.|-+++|||.....
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----------- 268 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----------- 268 (311)
T ss_pred CcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-----------
Confidence 99999999999999999984 456788899999999999999964 589999999999999987522
Q ss_pred ccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEeeCCCeEEEEEC
Q 015371 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~ 341 (408)
..+.....|. ..+..++||+ ++.++|.++.|+.++||+-
T Consensus 269 ----------------------s~~e~~~~Ht------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 ----------------------SAIETVDHHT------EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----------------------hhhhhhhccc------eEEeccccccccCceeeecccccceeeecc
Confidence 2233334444 2233334443 5679999999999999983
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=235.49 Aligned_cols=336 Identities=22% Similarity=0.256 Sum_probs=240.2
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-C----------CceEEEeecCcEEEEE
Q 015371 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-D----------QRFLVYASICAIVNIV 112 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~----------~~~l~~~~~dg~i~~w 112 (408)
.++.|+|....|.+.-.|..++|||+++-.++.+....-.|...|..+.--| + ...+++++.|++||+|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 4578999999999999999999999998766665555555666677666544 1 1358899999999999
Q ss_pred ECCCCceeeeeeee-----------eeeeeeeec------------CCCCCccceEEEEEcCCCCEEEEEecCCeEEEEE
Q 015371 113 DVGSSARESLANVT-----------IHKGLDFSA------------DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 169 (408)
Q Consensus 113 ~~~~~~~~~~~~~~-----------~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 169 (408)
+++.........-. ......+.. ..-+....+.+++.+|+|++|++|...|.++||+
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 99763211110000 000000000 0012345799999999999999999999999999
Q ss_pred CCCCcceeeecCcCCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC--CeE
Q 015371 170 LQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--RYF 245 (408)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l 245 (408)
+.+-+....+.+|+..|.|+.|+.|. .++|++++.|+.|.+||+. ....++.++.+|...|+++.|.-+| ..+
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccccceeEEEEeecCCceEE
Confidence 99999889999999999999998543 4789999999999999984 4667777888888888888887665 566
Q ss_pred EEeecCCeEEEEeCCCCcCccccc--------ccccccc----ccc-eeecccccceeeccCCCcceeeeecccce-eeE
Q 015371 246 ISNGKDQTTKLWDIRKMSSNTTDN--------SRLRDYD----WDY-RWMEYPSYARRLKHPHDQSLATYKGHSVL-RTL 311 (408)
Q Consensus 246 ~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (408)
++++.|..|.+--.++........ ..+-.+. |.. ...........+....++..+.|++.... ...
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 777777655443222111000000 0000000 000 01111222333344457777888876544 556
Q ss_pred EEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 312 ~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
++.+..| .|.|||+.+.|.++.++|..+++++.++.+|...|+.+.|.+|.+.|++.+.||.|.||.++..
T Consensus 645 IKv~lDP----SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 645 IKVILDP----SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEEECC----CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 6666554 5999999999999999999999999999999999999999999999999999999999999763
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=219.42 Aligned_cols=303 Identities=17% Similarity=0.167 Sum_probs=235.0
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc--------------c-ccceeeEEEEEeCCCC
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE--------------T-KALRWTITDTSLSPDQ 97 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--------------~-~~~~~~v~~~~~~~~~ 97 (408)
...+..|.-+|.|++++||.++.++++.+++|.-|++.++........ . ..|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 356778999999999999999999999999999999988754311111 1 2677789999999999
Q ss_pred ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee
Q 015371 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL 177 (408)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 177 (408)
++|++|+.|..|.||+..+.+. ...+..|.+ .|.+++|-.....+++++.|..|++|+++....+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh--v~~~~ghr~------------~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH--VKVFKGHRG------------AVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred cEEEecCCCceEEEecCcccch--hhccccccc------------ceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 9999999999999999988765 333444444 89999999888899999999999999999999999
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEE
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 257 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 257 (408)
++-+|...|..+... ..+..+-+|+.|+++++|++ .......+.++.+.+.|++|-. ...+++|+.+|.|.+|
T Consensus 281 tlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred HHhCCccceeeechh-cccceEEeccccceeEEEec-----cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 999999999999988 77788888889999999997 3344445778889999999984 5679999999999999
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEE
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 337 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 337 (408)
++-+......... +++..... ........+.+++..|...++|+|+.+|.|+
T Consensus 354 s~~KKkplf~~~~---------------------AHgv~~~~-------~~~~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 354 SLLKKKPLFTSRL---------------------AHGVIPEL-------DPVNGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred eecccCceeEeec---------------------cccccCCc-------cccccccceeeeEecccCceEEecCCCCceE
Confidence 9987432221100 00000000 0011113556667778899999999999999
Q ss_pred EEECCCC----ceeEEEccCCCCeeeeeEeCCCCeEEe-ecCCCcEEEEeeCC
Q 015371 338 IYDLVSG----AQVAKLDFHNAPVRDCCWHPIYPMLIS-SSWDCNIVRWEIPG 385 (408)
Q Consensus 338 vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~iw~~~~ 385 (408)
+|.+..+ +++..+. -.+.|++++|+++|+.+++ .+....+--|-...
T Consensus 406 LW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred EEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 9999877 4455555 5788999999999995554 46666665565443
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.2e-34 Score=216.47 Aligned_cols=255 Identities=18% Similarity=0.264 Sum_probs=210.7
Q ss_pred eeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeE
Q 015371 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 165 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 165 (408)
..+.|..|+|||++|++|+.||.|.+|+..+++......+.....+- -+..+|.|+.|+.|...+++|+.||.|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fM------Mmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFM------MMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhccee------ecccceEEEeecccHHHhhccCcCCcE
Confidence 45889999999999999999999999999998875544443332211 123379999999999999999999999
Q ss_pred EEEECCCCcceeeec-CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe
Q 015371 166 YVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244 (408)
Q Consensus 166 ~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 244 (408)
++|.+++|.++..+. +|...|+|+.|+ .++..+++++.|.++++.-+. .++.++.+.+|.+.|+...|.++|..
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCCCe
Confidence 999999999999996 899999999999 899999999999999999965 89999999999999999999999999
Q ss_pred EEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC
Q 015371 245 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 324 (408)
Q Consensus 245 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 324 (408)
+++++.||+|++|+..+..+ +.+++.......+...+.-|. +.
T Consensus 363 iisaSsDgtvkvW~~KtteC----------------------------------~~Tfk~~~~d~~vnsv~~~PK---np 405 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTTEC----------------------------------LSTFKPLGTDYPVNSVILLPK---NP 405 (508)
T ss_pred EEEecCCccEEEecCcchhh----------------------------------hhhccCCCCcccceeEEEcCC---CC
Confidence 99999999999999998444 444443333233333333332 45
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcc---CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 325 KYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
..++++...++|++.++ .|+.+..+.. ..+...+.+.+|.|.++...++|+.++.+.+.+++.+
T Consensus 406 eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 67888888999999998 6788888753 2345667789999999999999999999999887654
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=206.15 Aligned_cols=280 Identities=11% Similarity=0.113 Sum_probs=219.9
Q ss_pred ccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 39 MNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 39 h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
-++.|.+++||| ...+++.++.|++||+|+++....... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 468899999999 455666889999999999987422222 345567789999999999999999999999999999998
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC--EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
+.. .+..|.. +|.++.|-+... .|++|+.|.+|+.||.+...++.++. -...+.++..-
T Consensus 105 Q~~---~v~~Hd~------------pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--- 165 (347)
T KOG0647|consen 105 QVS---QVAAHDA------------PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--- 165 (347)
T ss_pred Cee---eeeeccc------------ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc---
Confidence 653 3334444 899999988655 89999999999999999998888876 35677777754
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
..+++++..++.|.+|++++.....+.. .....-.+.+++..++....+.|+-+|.+.+..+.....
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~----------- 232 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP----------- 232 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-----------
Confidence 5688889999999999986332222222 222345688999999888889999999999998877321
Q ss_pred cccceeecccccceeeccCCCcceeeeeccccee---eEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR---TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
..-..|+.|.... ..+..+.+++|+|.-..|++++.||+..+||-.....+.+.+.
T Consensus 233 ---------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~ 291 (347)
T KOG0647|consen 233 ---------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET 291 (347)
T ss_pred ---------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc
Confidence 2334555555321 1234556778999899999999999999999988888888889
Q ss_pred CCCCeeeeeEeCCCCeEEee
Q 015371 353 HNAPVRDCCWHPIYPMLISS 372 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~ 372 (408)
|..+|++.+|+.+|.+++-+
T Consensus 292 ~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCccceeEecCCCCEEEEE
Confidence 99999999999999977754
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.1e-34 Score=228.77 Aligned_cols=253 Identities=19% Similarity=0.277 Sum_probs=209.3
Q ss_pred cccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 79 IETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
....+|...|+++.|.| .+.+|++++.|+.|+||++... ...+..+..|.. +|.+++|+++|..++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k------------~Vrd~~~s~~g~~fL 274 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRK------------PVRDASFNNCGTSFL 274 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchh------------hhhhhhccccCCeee
Confidence 34567888999999999 8999999999999999999773 334566666555 899999999999999
Q ss_pred EEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
+++.|+.|++||.++|+++..+.. ...++|+.|.|.+.+.+++|+.|+.|+.||+| .++.++.+..|-+.|..+.
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAILDIT 349 (503)
T ss_pred eeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhheeeeE
Confidence 999999999999999999998873 66789999996666999999999999999988 7889999999999999999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
|-++|+++++.+.|+.++||+.+....... +.....|. ..+
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~-------------------------------i~~~~~hs--------mP~ 390 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKN-------------------------------IADPEMHT--------MPC 390 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchh-------------------------------hcchhhcc--------Ccc
Confidence 999999999999999999999987321111 11111111 122
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECCCC---ceeEEEccCC--CCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLVSG---AQVAKLDFHN--APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+..+|+++++++-+.|+.|.+|.+... .....+.+|. +.-..+.|||||.+|++|+.||.+.+||.++.+.
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 357789999999999999999997543 2334566774 4556789999999999999999999999987654
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-31 Score=201.42 Aligned_cols=249 Identities=20% Similarity=0.270 Sum_probs=198.6
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--C
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--D 162 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d 162 (408)
...|+++.|+++|..+++++.|..+++||..+++.... +...+- .+..++|......++.++. |
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t--i~skky------------G~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKY------------GVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE--eecccc------------cccEEEEecCCceEEEccCCCC
Confidence 34799999999999999999999999999998876433 322222 5888899887777777776 8
Q ss_pred CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
.+|+..++.+.+.++.+.+|...|++|+.+ |-++.+++++.|++|++||+| ..++...+. ...-..++|.|.|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~--~~~~pi~AfDp~G 152 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLN--LSGRPIAAFDPEG 152 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEe--cCCCcceeECCCC
Confidence 899999999999999999999999999999 666999999999999999987 333333333 2333457899999
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
-++|++...+.|++||+|.... .+...+.-.... ..-...+.|||
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dk--------------------------------gPF~tf~i~~~~---~~ew~~l~FS~ 197 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDK--------------------------------GPFTTFSITDND---EAEWTDLEFSP 197 (311)
T ss_pred cEEEEecCCCeEEEEEecccCC--------------------------------CCceeEccCCCC---ccceeeeEEcC
Confidence 9999998888999999998532 222333222100 01122347999
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCe---eeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV---RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
||++|+.++..+.+++.|.-+|..+.++..+...- -..+|+||++++++|+.||+|.+|+++++.+.
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 99999999999999999999999999987765432 56789999999999999999999999887664
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=8.8e-32 Score=212.68 Aligned_cols=282 Identities=18% Similarity=0.250 Sum_probs=232.3
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
..+.++...|....++||+.|..+.++|...+..+ ....+|...|+.+.|+|+...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l---~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL---ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhh---hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 55888888888788999999999999998877433 356778889999999999999999999999999998766532
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC--cCCCceEEEEecCCCCE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHL 198 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~ 198 (408)
..... |..+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+ ||+.+
T Consensus 297 --~~~~~------------h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgLi 361 (506)
T KOG0289|consen 297 --TSSRP------------HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGLI 361 (506)
T ss_pred --ccccc------------ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCceE
Confidence 22223 344899999999999999999999999999999988776653 23468999999 99999
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccc
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 278 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 278 (408)
|.+|..||.+++||+. .......+.+|.++|..++|+.+|-+|+++++|+.|++||+|...
T Consensus 362 fgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--------------- 422 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--------------- 422 (506)
T ss_pred EeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---------------
Confidence 9999999999999975 566888899999999999999999999999999999999999833
Q ss_pred ceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC--CCceeEEEccCCCC
Q 015371 279 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV--SGAQVAKLDFHNAP 356 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~ 356 (408)
...++...... .+-+..|.+.|.+|+.++.|=.|++++-. +..++..+..|.+.
T Consensus 423 -------------------n~kt~~l~~~~-----~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 423 -------------------NFKTIQLDEKK-----EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred -------------------ccceeeccccc-----cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccc
Confidence 22222222210 12233566779999999888777777743 45677788888999
Q ss_pred eeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 357 VRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
.+.+.|..+.++++++|.|..++++.+
T Consensus 479 st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 479 STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeeecccceEEeeccchhheEEeec
Confidence 999999999999999999999988865
No 82
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=7e-32 Score=225.25 Aligned_cols=286 Identities=16% Similarity=0.268 Sum_probs=232.9
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEE-EEeCC-CCceEEEeecCcEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSP-DQRFLVYASICAIVN 110 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~ 110 (408)
...+.||...|..+++.+.. .+++++.||++++|+-..++-. ......+|.+-|.. +++-+ ++-.|++|+.|..+.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l-~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL-ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc-cceecccCcceeeccceeccccCcceEeecccceEE
Confidence 35688999999999987654 7899999999999996554322 22233444455665 78875 555699999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
+|...+... ...+..|+. .|.++....++. +++|+.|.++++|-. +++...+++|+..|.+++
T Consensus 85 v~~~~~~~P--~~~LkgH~s------------nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 85 VFKLSQAEP--LYTLKGHKS------------NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVA 147 (745)
T ss_pred EEecCCCCc--hhhhhcccc------------ceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeee
Confidence 999877654 555555555 799999888887 999999999999976 566677999999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
.. |++ .+++|+.|.+|++|. .+..++++.+|.+.|..+++-+++. |++++.||.|++|++..
T Consensus 148 ~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g--------- 209 (745)
T KOG0301|consen 148 SL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG--------- 209 (745)
T ss_pred ec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC---------
Confidence 98 544 899999999999999 6889999999999999999997654 88999999999999954
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
..+..+.+|.... ++.+...++..++++++|++++||+.. ++.+.+
T Consensus 210 --------------------------e~l~~~~ghtn~v------Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 210 --------------------------EVLLEMHGHTNFV------YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred --------------------------ceeeeeeccceEE------EEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 7788888888444 444555678899999999999999875 888888
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
....-.|+++.+-++|. +++|++||.|+||.........
T Consensus 256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As 294 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKAS 294 (745)
T ss_pred ecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCC
Confidence 86667899999998886 6778899999999988655543
No 83
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.1e-31 Score=227.53 Aligned_cols=257 Identities=19% Similarity=0.212 Sum_probs=191.0
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeee-eeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCe
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTI-HKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNF 164 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 164 (408)
.|.....++++..+++++.+.....|+...+... ..... .+...-.+...+|..+|.+++|+| ++++|++|+.|+.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEE--eeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 4666667778777888888888888887654321 11110 000000112346777999999999 8889999999999
Q ss_pred EEEEECCCC-------cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 165 IYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 165 i~i~d~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
|++||+.++ +++..+.+|...|.+++|+|..+++|++++.|++|++||++ .+.....+.+|...|.+++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEEE
Confidence 999999765 34567889999999999995556899999999999999975 5667778889999999999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
|+|++.+|++++.|+.|++||+++ +..+..+.+|..... ..+.
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rs----------------------------------g~~v~tl~~H~~~~~-~~~~-- 218 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRD----------------------------------GTIVSSVEAHASAKS-QRCL-- 218 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCC----------------------------------CcEEEEEecCCCCcc-eEEE--
Confidence 999999999999999999999987 344555666643221 1222
Q ss_pred ccccCCCcEEEEee----CCCeEEEEECCCCc-eeEEEccC-CCCeeeeeEeCCCCeEEeec-CCCcEEEEeeCCCCC
Q 015371 318 PEYSTAQKYIYTGS----SDNSVYIYDLVSGA-QVAKLDFH-NAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPGIGE 388 (408)
Q Consensus 318 ~~~s~~~~~l~~~~----~dg~i~vwd~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~~~ 388 (408)
|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.++..
T Consensus 219 --w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 219 --WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred --EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 445566666543 47999999998764 44444333 34566678999999998887 599999999987653
No 84
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-32 Score=219.05 Aligned_cols=287 Identities=17% Similarity=0.244 Sum_probs=235.4
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEE--EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
...|.+-|.++.+|...+.+.||+. |.|+|||+....... ..+........|.++...|||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 3478899999999999999999986 579999987542111 1122222344799999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
+..........+..... .+.+++.+||.+..++++.||.|.|||+.+...+..+++|...+.||..+
T Consensus 494 LAapTprikaeltssap------------aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis- 560 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAP------------ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS- 560 (705)
T ss_pred ccCCCcchhhhcCCcch------------hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec-
Confidence 98776543333332211 57889999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
+++..|.+|+-|.+||.||+| ++..+... .....|.++...|++.++++|-.++.+.+.....
T Consensus 561 ~dGtklWTGGlDntvRcWDlr----egrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk------------ 623 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLR----EGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK------------ 623 (705)
T ss_pred CCCceeecCCCccceeehhhh----hhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC------------
Confidence 999999999999999999987 44443332 2467899999999999999999999998887765
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 353 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (408)
.....+..|. .++.++.|++.|+++++.+.|+.+..|...-|..+...+ .
T Consensus 624 -----------------------p~kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E 673 (705)
T KOG0639|consen 624 -----------------------PEKYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E 673 (705)
T ss_pred -----------------------ccceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-c
Confidence 2233344444 566777888889999999999999999999998888776 4
Q ss_pred CCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 354 NAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
..+|.++..|-|.++++||+.|....+|.+
T Consensus 674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 678999999999999999999998888876
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-30 Score=195.87 Aligned_cols=279 Identities=14% Similarity=0.151 Sum_probs=217.7
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCce
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (408)
.+.|.++.|+|.+..|++++.||++++|+....... ....|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 678999999999999999999999999999876222 2334555899999987 55688999999999999998865
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 199 (408)
..+. . |..+|.|+.+++....+++|+.|+.|++||.+.......+.. ...|.++... ++.|
T Consensus 88 ~~ig---t------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 88 DQIG---T------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS---GNRL 148 (323)
T ss_pred eeec---c------------CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc---CCEE
Confidence 3322 2 333799999999888899999999999999987655555543 4588888866 8899
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
++|+.|..+.+||+|+..... ...-..-.-.+.++++.|++.=+++++-||.|.+=.++.....
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~-------------- 212 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA-------------- 212 (323)
T ss_pred EEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH--------------
Confidence 999999999999998432221 1112233456889999998888999999999988666552111
Q ss_pred eeecccccceeeccCCCcceeeeecccc---eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCC
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSV---LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 356 (408)
......|+.|.. ......++.+++|+|--..||+|+.||.|.+||+.+.+.+..+......
T Consensus 213 ----------------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S 276 (323)
T KOG1036|consen 213 ----------------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS 276 (323)
T ss_pred ----------------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence 122234444432 2344456667789998899999999999999999999999999877788
Q ss_pred eeeeeEeCCCCeEEeecC
Q 015371 357 VRDCCWHPIYPMLISSSW 374 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~~~ 374 (408)
|.+++|+.+|..||.++.
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 999999999999999864
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-31 Score=220.25 Aligned_cols=277 Identities=16% Similarity=0.211 Sum_probs=219.3
Q ss_pred eeEecCCccEEEeec-CceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc
Q 015371 6 EVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
-+.||..+.+..+.+ ..++|............-+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..... .|
T Consensus 182 lldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--~h 259 (484)
T KOG0305|consen 182 LLDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--SH 259 (484)
T ss_pred HhhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC--Cc
Confidence 356776555544433 444444433332222333489999999999999999999999999999988765554332 26
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
...|.+++|. +..+.+|+.++.|..+|+...+.... .... |...|..+.|++|+.++++|+.|+.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~------------H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQG------------HRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhc------------ccceeeeeEECCCCCeeccCCCccc
Confidence 6789999998 77899999999999999987654332 2333 4448999999999999999999999
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec--CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
+.|||....+++..+..|..+|..++|+|....+||+|+ .|+.|++||.. .+..+.... ....|..+.|++..
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKY 399 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCC
Confidence 999999888999999999999999999998999999975 59999999964 555555544 46789999999998
Q ss_pred CeEEEe--ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc
Q 015371 243 RYFISN--GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320 (408)
Q Consensus 243 ~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (408)
+-|+++ ..++.|.||+..+ ...+..+.+|... +..+++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps----------------------------------~~~~~~l~gH~~R------Vl~la~ 439 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS----------------------------------MKLVAELLGHTSR------VLYLAL 439 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc----------------------------------cceeeeecCCcce------eEEEEE
Confidence 777664 3467899999987 4667788888843 344578
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCC
Q 015371 321 STAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
||||..+++|+.|.++++|++-..
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999998764
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-30 Score=190.87 Aligned_cols=266 Identities=13% Similarity=0.165 Sum_probs=219.8
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecCc-----eeeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeEE
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-----WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQ 76 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~ 76 (408)
+-++++|+-||..+++++.+.....+..... ....||.+.|-.++|+|. ..+|++++.|.+|++||+..+++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 3478999999999999887776666655443 345689999999999984 5789999999999999999998877
Q ss_pred EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
......+ =.-+.|+|+|++++++..|..|...|..+.+......++. .+..+.|+.++..+
T Consensus 102 ~i~~~~e----ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~---------------e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 102 RIETKGE----NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF---------------EVNEISWNNSNDLF 162 (313)
T ss_pred EeeccCc----ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc---------------eeeeeeecCCCCEE
Confidence 6655444 2347899999999999999999999998776544433322 47788999888877
Q ss_pred EEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEE
Q 015371 157 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 236 (408)
+.....|.|.|....+-+++..+++|.....|+.|+ |+|++|++|+.|..+.+||+. ...+++.+..+.-+|..+
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVD----ELICERCISRLDWPVRTL 237 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChh----HhhhheeeccccCceEEE
Confidence 777778999999999999999999999999999999 999999999999999999975 778888999999999999
Q ss_pred EecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
.|+.+|++|+++++|..|-|=+++++ ..+..++.. ...+
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetG----------------------------------d~~~eI~~~-------~~t~ 276 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETG----------------------------------DRVWEIPCE-------GPTF 276 (313)
T ss_pred EeccCcceeeccCccceEEeEecccC----------------------------------CeEEEeecc-------CCce
Confidence 99999999999999999988888873 333333322 3345
Q ss_pred eccccCCCcEEEEeeCC
Q 015371 317 SPEYSTAQKYIYTGSSD 333 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~d 333 (408)
.++|+|...+||-++.|
T Consensus 277 tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 277 TVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEecCCCceeeEEecC
Confidence 66888889999887764
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-32 Score=214.26 Aligned_cols=270 Identities=19% Similarity=0.302 Sum_probs=209.1
Q ss_pred cccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeEEE-------ecccccceeeEEEEEeCCC-CceEEEeecCcE
Q 015371 38 GMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQK-------DIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 108 (408)
.|.+.|+.+.+-|.. ..+|+.+..+.|.|||......... .+...+|...-.+++|++. .-.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 588999999999965 5667778889999999876433222 2245566666778999984 457889999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECC--CCcceeeecCcCCC
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQ--ANKCSLRIPAHKSD 185 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 185 (408)
|++||+....... +..........|...|..++|++ +..++++++.|+.+.|||++ +.++.....+|.++
T Consensus 202 i~lwdi~~~~~~~-------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 202 ICLWDINAESKED-------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred EEEEeccccccCC-------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 9999997654320 00111111234566899999999 55678888999999999999 56666777899999
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcC
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
|.|++|+|.++.+||+|+.|++|++||+|+ ...++..+.+|...|..+.|+|.. ..|++++.|+.+.+||+.....
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn---L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRN---LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechh---cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 999999999999999999999999999984 455889999999999999999964 5788999999999999876211
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
.+. +.. ..|| ..
T Consensus 352 eq~--------------------------------------------------~ed----------a~dg--------pp 363 (422)
T KOG0264|consen 352 EQS--------------------------------------------------PED----------AEDG--------PP 363 (422)
T ss_pred ccC--------------------------------------------------hhh----------hccC--------Cc
Confidence 000 000 0111 23
Q ss_pred ceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCC
Q 015371 345 AQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 385 (408)
+++....+|...|..+.|+|+.. .++|.++|+.+.||++..
T Consensus 364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 56677789999999999999988 678889999999999873
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=211.97 Aligned_cols=263 Identities=21% Similarity=0.305 Sum_probs=215.6
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeee----eeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT----IHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
.....|..+|.+++++|++++.++++.+++|.-|++.+++........ ......+......|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 344567779999999999999999999999999999888743111111 0011222222247888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
+|++|+.|..|.||+..+.+.+..+.+|.+.|.+++|- ...+.+++++.|++|++|++. ....+.++.+|.+.|.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVL 290 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999998 778889999999999999975 7778888999999999
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
++....-++.+.+|+.|+++++|++.. .....+.++.....+...
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAF 335 (479)
T ss_pred eechhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEE
Confidence 999998888888888999999999965 333445555544444433
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc-cC-----------CCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-FH-----------NAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
+ +...+++|+.||.|.+|++.+.+++.+.+ +| ...|++++..|...++++|+.+|.|++|.
T Consensus 336 I-------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 336 I-------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred e-------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 3 36789999999999999999999887764 22 12789999999999999999999999999
Q ss_pred eCCCCC
Q 015371 383 IPGIGE 388 (408)
Q Consensus 383 ~~~~~~ 388 (408)
+..+-.
T Consensus 409 i~~g~r 414 (479)
T KOG0299|consen 409 IEDGLR 414 (479)
T ss_pred ecCCcc
Confidence 988744
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=225.68 Aligned_cols=291 Identities=20% Similarity=0.343 Sum_probs=233.2
Q ss_pred cccCcee---EEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeE--E-EecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 38 GMNSRVY---TSQFSN-DGSFFVAASQESNIKVYNVDKNWKI--Q-KDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 38 ~h~~~v~---~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.|...|. .+..++ .+++|.|||.||.|++|+....... . .......|...|+.+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3445555 455554 5678999999999999998764321 1 1334556777899999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE-cCCCCEEEEEecCCeEEEEECCCCc--ceee--------e
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF-STDGQELVAAGSDNFIYVYDLQANK--CSLR--------I 179 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~--------~ 179 (408)
+|+...........+..|+. -|.|+++ .++...+++|+-|+.|.+||++++. .+.. +
T Consensus 99 ~W~~~~~~~~c~stir~H~D------------YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKD------------YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred EeecccCcchhHhhhhcccc------------hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 99997765334444555544 7999999 7788899999999999999999772 2222 2
Q ss_pred c-CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEe
Q 015371 180 P-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258 (408)
Q Consensus 180 ~-~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 258 (408)
. ++..+|.+++.+ +.+..|++|+..+.+++||.| ..+.+..+.+|+..|..+..++||..+++++.||+|++||
T Consensus 167 ~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred CCCCccceeeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 2 788899999999 888999999999999999976 7788888999999999999999999999999999999999
Q ss_pred CCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEE
Q 015371 259 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 338 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v 338 (408)
+.. .+++.++..|.. .+|+...+|+=..+.+|+.||.|+.
T Consensus 242 Lgq----------------------------------QrCl~T~~vH~e------~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 242 LGQ----------------------------------QRCLATYIVHKE------GVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred ccc----------------------------------cceeeeEEeccC------ceEEEeeCCCcceEEecCCCCcEEe
Confidence 987 577788887873 3566666777889999999999999
Q ss_pred EECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 339 YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|...-
T Consensus 282 Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 282 TDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 99998644333333566788888876666556777899999997653
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-30 Score=197.32 Aligned_cols=268 Identities=19% Similarity=0.298 Sum_probs=205.1
Q ss_pred EEEEeCCCcEEEEEcCCCe---------eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeee
Q 015371 55 FVAASQESNIKVYNVDKNW---------KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (408)
Q Consensus 55 l~t~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (408)
+++|+....|.=+++.-.. .+........|.++|++++.+ +.++|+|+.|.+|+|||+..... ...+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q--lg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ--LGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh--hcce
Confidence 5667766666555553221 223345667888999999995 99999999999999999987654 2333
Q ss_pred eeeeeeeeecCCCCCccceEEEEEcCCCC--EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec
Q 015371 126 TIHKGLDFSADGDEDEFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
..|.+ .|+++.|.++.. .|++|+.||.|.+|+....+++..+++|.+.|+.++.+ |.+++.++.+
T Consensus 80 l~Hag------------sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALsVg 146 (362)
T KOG0294|consen 80 LSHAG------------SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALSVG 146 (362)
T ss_pred ecccc------------ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEEEc
Confidence 33333 799999998765 89999999999999999999999999999999999999 8999999999
Q ss_pred CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
.|+.++.|++- .++.-.... -....+.+.|+|.|.+++.++.+ .|-+|.+.+.....
T Consensus 147 ~D~~lr~WNLV----~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~----------------- 203 (362)
T KOG0294|consen 147 GDQVLRTWNLV----RGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFR----------------- 203 (362)
T ss_pred CCceeeeehhh----cCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhh-----------------
Confidence 99999999974 343333322 22333459999999999988876 48999887722111
Q ss_pred ccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeE-
Q 015371 284 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW- 362 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~- 362 (408)
.+... .... ++. | -++.++++|..|+.|.+||..+..+...+.+|..+|-++.+
T Consensus 204 -----------------~i~~~---~r~l-~~~---~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 204 -----------------EIENP---KRIL-CAT---F-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASY 258 (362)
T ss_pred -----------------hhhcc---ccce-eee---e-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEE
Confidence 11111 0011 111 1 14789999999999999999999999999999999999984
Q ss_pred -eCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 363 -HPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 363 -~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.|++.+|+|+|.||.|++||+....
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ecCCceEEEEeccCceEEEEEccccc
Confidence 4667899999999999999998753
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=201.19 Aligned_cols=277 Identities=14% Similarity=0.243 Sum_probs=219.3
Q ss_pred eeEec---CCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 6 EVNYS---GRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 6 ~~~~s---~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
.|+|| |+|-|+.+...+.--.+..... .-++.||.+.|+...++.+..+.|+++.|-+-+|||.-++..+..
T Consensus 19 dl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-- 96 (334)
T KOG0278|consen 19 DLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-- 96 (334)
T ss_pred EEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh--
Confidence 35666 5888887766544322211111 247899999999999999999999999999999999988855543
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
..|..-|.+++|+.|.++|++|+.+..+|+||++..+.... .+. +|...|..+.|....+.|+++
T Consensus 97 --f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~-E~~------------ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 97 --FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK-EIS------------GHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred --hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-hhc------------CCCCcceeEEEeccCceEEee
Confidence 34555799999999999999999999999999987664322 222 344589999999988899999
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
+.|+.|++||.+++..++++. ...+|+++.++ +++.+|.++. .+.|.+||.. ....++... -...|.+...+
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs-~dG~ilTia~-gssV~Fwdak----sf~~lKs~k-~P~nV~SASL~ 233 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVS-QDGRILTIAY-GSSVKFWDAK----SFGLLKSYK-MPCNVESASLH 233 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeec-cCCCEEEEec-CceeEEeccc----cccceeecc-Ccccccccccc
Confidence 999999999999999999887 47899999999 8888776654 5689999964 555555554 34568899999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee-ecccceeeEEEEEeec
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSP 318 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (408)
|+...+++|++|..++.||..+ +..+..+ ++|... +.++
T Consensus 234 P~k~~fVaGged~~~~kfDy~T----------------------------------geEi~~~nkgh~gp------VhcV 273 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNT----------------------------------GEEIGSYNKGHFGP------VHCV 273 (334)
T ss_pred CCCceEEecCcceEEEEEeccC----------------------------------CceeeecccCCCCc------eEEE
Confidence 9999999999999999999998 3444443 566643 4445
Q ss_pred cccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 319 EYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 319 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
.|+|||...++|++||+|++|.+..++..
T Consensus 274 rFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 274 RFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EECCCCceeeccCCCceEEEEEecCCCch
Confidence 79999999999999999999998766543
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=228.00 Aligned_cols=234 Identities=16% Similarity=0.253 Sum_probs=193.3
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC----------------------------------------------------
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---------------------------------------------------- 32 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 32 (408)
-++.||+||+|+|+++.+.+.++|....
T Consensus 271 w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~ 350 (712)
T KOG0283|consen 271 WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLL 350 (712)
T ss_pred EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccC
Confidence 4788999999999999999888776443
Q ss_pred -----------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceE
Q 015371 33 -----------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFL 100 (408)
Q Consensus 33 -----------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 100 (408)
...+.||.+.|..+.||.+ .+|++++.|.+|+||++....++..+ .|..-|+|++|+| |.+++
T Consensus 351 p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryF 425 (712)
T KOG0283|consen 351 PLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYF 425 (712)
T ss_pred CCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcE
Confidence 0246699999999999976 58999999999999999988777643 4566899999999 88999
Q ss_pred EEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec
Q 015371 101 VYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 180 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 180 (408)
++|+-||.+|||++...+......+. . -|++++|.|||+..++|+.+|.+++|+....+......
T Consensus 426 iSGSLD~KvRiWsI~d~~Vv~W~Dl~---~------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 426 ISGSLDGKVRLWSISDKKVVDWNDLR---D------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eecccccceEEeecCcCeeEeehhhh---h------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999999999887664433332 2 49999999999999999999999999998776655431
Q ss_pred ---------CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC--CeEEEEecCCCCeEEEee
Q 015371 181 ---------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGRYFISNG 249 (408)
Q Consensus 181 ---------~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~ 249 (408)
.|. .|+.+.|.|.+.+.+++.+.|..|||+|.+ ....+..++++.. .-....|+.||++|++++
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 133 899999998788888899999999999975 5677777776543 345667899999999999
Q ss_pred cCCeEEEEeCCCCc
Q 015371 250 KDQTTKLWDIRKMS 263 (408)
Q Consensus 250 ~d~~i~iwd~~~~~ 263 (408)
+|..|++|++....
T Consensus 566 eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 566 EDSWVYIWKNDSFN 579 (712)
T ss_pred cCceEEEEeCCCCc
Confidence 99999999986533
No 94
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.8e-30 Score=220.82 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=186.3
Q ss_pred EeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecC
Q 015371 58 ASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSAD 136 (408)
Q Consensus 58 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (408)
|+.++.|++|+......+ ....+|...|.+++|+|+ +.+|++|+.|+.|++||+.++...... ... ....
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i~~-----p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-IKD-----PQCI 120 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-ccc-----ceEE
Confidence 566789999997665333 344577789999999996 789999999999999999764321000 000 0001
Q ss_pred CCCCccceEEEEEcCCCCEE-EEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccc
Q 015371 137 GDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (408)
...|...|.+++|+|++..+ ++++.|+.|++||+++++....+. |...|.+++|+ +++.+|++++.|+.|++||++
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~R- 197 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDPR- 197 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEECC-
Confidence 12355589999999988764 688999999999999998777765 56789999999 899999999999999999987
Q ss_pred cccCCccceeeecccCCeEEE-----EecCCCCeEEEeecCC----eEEEEeCCCCcCccccccccccccccceeecccc
Q 015371 216 FISKGRANGVLMGHLEGITFI-----DSRRDGRYFISNGKDQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 286 (408)
Q Consensus 216 ~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (408)
.+..+..+.+|.+.+... .|++++.+|++++.|+ +|++||++...
T Consensus 198 ---sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----------------------- 251 (568)
T PTZ00420 198 ---KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----------------------- 251 (568)
T ss_pred ---CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------------------
Confidence 567778888998765433 3458889999988774 79999998622
Q ss_pred cceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc--cCCCCeeeeeEeC
Q 015371 287 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD--FHNAPVRDCCWHP 364 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~ 364 (408)
.++..+..+.....+ ...+ ..+++.++++|+.|+.|++|++..+. +..+. .+..++.+++|.|
T Consensus 252 ----------~pl~~~~ld~~~~~L-~p~~---D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 252 ----------SALVTMSIDNASAPL-IPHY---DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred ----------CceEEEEecCCccce-EEee---eCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcc
Confidence 233333222211111 1111 13458899999999999999997764 33332 2567888999999
Q ss_pred CCC
Q 015371 365 IYP 367 (408)
Q Consensus 365 ~~~ 367 (408)
+..
T Consensus 317 kr~ 319 (568)
T PTZ00420 317 KQI 319 (568)
T ss_pred ccc
Confidence 753
No 95
>KOG4328 consensus WD40 protein [Function unknown]
Probab=100.00 E-value=4.4e-31 Score=210.10 Aligned_cols=311 Identities=14% Similarity=0.184 Sum_probs=232.8
Q ss_pred cCceeeecccCceeEEEEcCCC--CeEEEEeCCCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCC-CCceEEEeecC
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSP-DQRFLVYASIC 106 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 106 (408)
..+...+-|.++|++++|+|.. +++|+|..-|+|-+||+.+.+ ..........|..+|.++.|+| +...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3345667789999999999964 588899999999999995332 2233445567778999999999 55788899999
Q ss_pred cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc-eeeecCcCCC
Q 015371 107 AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSD 185 (408)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~ 185 (408)
|+|++-|+++.....+........ .+..+.|+.+...++.+..=|...+||++++.. ...+.-|...
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~------------~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNI------------WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccce------------eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999998876554444432222 578889998888888888888999999987654 5556778899
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCc
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
|.+++++|-...+|++++.|++.+|||+|.......+......|...|.+..|+|.+..|++.+.|..|+|||..-....
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 99999999899999999999999999999655444445566679999999999999888999999999999997421100
Q ss_pred cccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 266 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
..+...+. |.......-..+...|.|+..+|++|..-..|-|+|-..++
T Consensus 405 ------------------------------~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 405 ------------------------------DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ------------------------------CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 11112211 11111111123444677889999999999999999998888
Q ss_pred eeEEEccCCC-Ceee-eeEeCCCCeEEe-ecCCCcEEEEeeC
Q 015371 346 QVAKLDFHNA-PVRD-CCWHPIYPMLIS-SSWDCNIVRWEIP 384 (408)
Q Consensus 346 ~~~~~~~~~~-~v~~-~~~~~~~~~l~s-~~~dg~v~iw~~~ 384 (408)
.+..+..... .|.+ ..|+|-+..+++ ++..|.|+||.-.
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 7888654433 4555 489999884555 5567889888643
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.9e-31 Score=208.59 Aligned_cols=293 Identities=11% Similarity=0.162 Sum_probs=230.9
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCc-eEEEeecCcEEEEEECCCCc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~ 118 (408)
.+.|+++.|+|...+|.+|+.|++++||.++..... .+....-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 477999999999999999999999999998764221 2222222344899999999999 88899999999999999888
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCE
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 198 (408)
...+..+..... ..+.....++++++|+..+..|.|.+....+++.+..++ ..+.|..++|+ .++..
T Consensus 292 ~~k~~~~~g~e~-----------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-Sdsk~ 358 (514)
T KOG2055|consen 292 VTKLKPPYGVEE-----------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-SDSKE 358 (514)
T ss_pred cccccCCCCccc-----------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-cCCcE
Confidence 766655544431 147788899999999999999999999999999999887 47889999999 88999
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccC-CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccc
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 277 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 277 (408)
|++.+.+|.|.+||++ ...+++.+....+ .-++++.++++.+|++|+..|.|.|||.++-...
T Consensus 359 l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s------------ 422 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS------------ 422 (514)
T ss_pred EEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc------------
Confidence 9999999999999987 4566666654322 2357788899999999999999999997762111
Q ss_pred cceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC--CCeEEEEECCCCceeEEEccC--
Q 015371 278 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSGAQVAKLDFH-- 353 (408)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~-- 353 (408)
...+++..+.. ....+.++.|++|+++||.++. +..+++-.+.+......+...
T Consensus 423 ----------------~~PkPik~~dN------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~ 480 (514)
T KOG2055|consen 423 ----------------TNPKPIKTVDN------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT 480 (514)
T ss_pred ----------------CCCCchhhhhh------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC
Confidence 11233333322 2245567789999999998886 567999888776665555432
Q ss_pred -CCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 354 -NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 354 -~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
-+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus 481 ~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 481 KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3569999999999999999999999999875
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.1e-30 Score=221.54 Aligned_cols=269 Identities=23% Similarity=0.291 Sum_probs=214.0
Q ss_pred EEEeecCceEEEEEEecCc---ee-eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEE
Q 015371 15 FSAADSCHVLSRYLPVNGP---WK-VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~---~~-l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~ 90 (408)
++.++........+..... .. +.||.+.|++++|..-+.+|++|+.|.++++||..++.+...+. +|...|.+
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~---gh~stv~~ 296 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ---GHTSSVRC 296 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec---CCCceEEE
Confidence 3444444443355544433 33 88999999999999888999999999999999999998887654 56668888
Q ss_pred EEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC
Q 015371 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 170 (408)
Q Consensus 91 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 170 (408)
+... +..+++|+.|.+|++|++.++....... .| ..+|.++..+ +.++++|+.|+.|.+||+
T Consensus 297 ~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~--~h------------~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 297 LTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR--GH------------TGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEcc--CceEeeccCCceEEEEeccCcceEEEec--cc------------cccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 8774 5577888999999999999876643332 23 3389999997 779999999999999999
Q ss_pred CCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC-ccceeeecccCCeEEEEecCCCCeEEEee
Q 015371 171 QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
.+++++..+.+|...|.++.+. .. +.+++|+.|++|++||++ .. +++..+.+|..-+..+.+. +++|++++
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~ 430 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS 430 (537)
T ss_pred hhceeeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCcccccccccc--cceeEecc
Confidence 9999999999999999999886 33 899999999999999986 45 8999999999988776664 78999999
Q ss_pred cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecc-cceeeEEEEEeeccccCCCcEEE
Q 015371 250 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIY 328 (408)
Q Consensus 250 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~ 328 (408)
.|++|++||..+ ++++..+.+. ...... .++. ...++
T Consensus 431 aD~~Ik~WD~~~----------------------------------~~~~~~~~~~~~~~v~~------l~~~--~~~il 468 (537)
T KOG0274|consen 431 ADGTIKLWDAEE----------------------------------GECLRTLEGRHVGGVSA------LALG--KEEIL 468 (537)
T ss_pred ccccEEEeeccc----------------------------------CceeeeeccCCcccEEE------eecC--cceEE
Confidence 999999999988 4556666663 222221 1221 36789
Q ss_pred EeeCCCeEEEEECCCCceeEEEccCC
Q 015371 329 TGSSDNSVYIYDLVSGAQVAKLDFHN 354 (408)
Q Consensus 329 ~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (408)
+++.||.+++||+++++.+..+-.+.
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred EEecCCeeEEEecccCchhhhhhhcc
Confidence 99999999999999999888774343
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.2e-31 Score=199.03 Aligned_cols=281 Identities=21% Similarity=0.266 Sum_probs=214.6
Q ss_pred eeeEecCCccEEEeecCceEEEEEEec------C---------------ceeeecccCceeEEEEcCCCCeEEEEeCCCc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVN------G---------------PWKVDGMNSRVYTSQFSNDGSFFVAASQESN 63 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~------~---------------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~ 63 (408)
|+-+||+||.+.++++.+....++..+ . .++|-.|.+.|+++.|+|....|++|+.|++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 788999999999999998888777654 1 1346689999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccc
Q 015371 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFG 143 (408)
Q Consensus 64 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (408)
|+++|+...... +.........+|.++.|+|.|.+|++|.....+++||+++-+.-.... ..+.|...
T Consensus 196 vKlFDfsK~saK-rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----------Pd~qht~a 263 (430)
T KOG0640|consen 196 VKLFDFSKTSAK-RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----------PDDQHTGA 263 (430)
T ss_pred EEEEecccHHHH-HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----------cccccccc
Confidence 999998754211 111122223389999999999999999999999999999876532222 22356678
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcC-CCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCc
Q 015371 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 221 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (408)
|+++.+++.++..++|+.||.|++||--+++++.++ +.|. ..|.+..|. .+++++++.+.|..+++|.+. .++
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~----t~R 338 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEIS----TGR 338 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeec----CCc
Confidence 999999999999999999999999999999999888 3455 578888898 999999999999999999964 778
Q ss_pred cceeeeccc-----CCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCC
Q 015371 222 ANGVLMGHL-----EGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 295 (408)
Q Consensus 222 ~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (408)
.+..+.+-. .--+...|+....+++.-.+ .+.+.-||.++....
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~------------------------------ 388 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV------------------------------ 388 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh------------------------------
Confidence 887776531 11233457767777666544 567999999983211
Q ss_pred CcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 296 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
...-.+|...... ..-||.+.-+++|+.|-.+++|--
T Consensus 389 ---~l~slgHn~a~R~------i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 ---ALLSLGHNGAVRW------IVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ---hhcccCCCCCceE------EEeCCCCCceeeecccceeeeeee
Confidence 1111234422221 135667889999999999999964
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=4.4e-30 Score=203.16 Aligned_cols=278 Identities=18% Similarity=0.261 Sum_probs=216.1
Q ss_pred eeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
++...|...+..+++.+.....++... ...+.||.-.|+.+.|+|+...+++++.|..|+||........ ....
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---~~~~ 300 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---TSSR 300 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---cccc
Confidence 344455545677777775444444333 3578899999999999999999999999999999998776433 3455
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
.|+.+|+.+..+|.|.||++++.||+..+.|+.++.......-... .-.+++.+|+|||..|.+|..|
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s------------~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS------------DVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc------------cceeEEeeEcCCceEEeccCCC
Confidence 6777999999999999999999999999999998876444332211 1259999999999999999999
Q ss_pred CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-ccCCeEEEEecCC
Q 015371 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRD 241 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 241 (408)
|.|++||+.++.....|.+|.++|..++|+ .+|.+|+++++|+.|++||+|+ .+...++.- ....+.++.|.+.
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRK----l~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRK----LKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehh----hcccceeeccccccceeEEEcCC
Confidence 999999999999999999999999999999 9999999999999999999983 333333332 2337999999999
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
|.+|+.++.|=+|++++-.+. ....+..+..|....+ ...|.
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k--------------------------------~W~~~~~~~~~sg~st------~v~Fg 485 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTK--------------------------------SWTEIKELADHSGLST------GVRFG 485 (506)
T ss_pred CCeEEeecceeEEEEEecccc--------------------------------cceeeehhhhcccccc------eeeec
Confidence 999999988766666654331 1334444444442222 23566
Q ss_pred CCCcEEEEeeCCCeEEEEEC
Q 015371 322 TAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~ 341 (408)
...+++++++.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 67899999999999888764
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=194.97 Aligned_cols=256 Identities=18% Similarity=0.197 Sum_probs=205.0
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEEEE
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVD 113 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~ 113 (408)
-..|++.|..+...--|++|||++.|++|+|+...++.....+..+.+|.++|..++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 357999999999998999999999999999999998876666778889999999999965 799999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCC---cceeeecCcCCCceE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNT 188 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~ 188 (408)
-++++-........|.. .|++++|.|. |-.|++++.||.|.|.+.++. ........|.-.|++
T Consensus 87 e~~g~w~k~~e~~~h~~------------SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSA------------SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred cCCCchhhhhhhhhhcc------------cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 98886555544444444 8999999984 668899999999999998654 223344679999999
Q ss_pred EEEecCC--C-----------CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC----CeEEEeecC
Q 015371 189 VCFADET--G-----------HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFISNGKD 251 (408)
Q Consensus 189 l~~~~~~--~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d 251 (408)
++|.|.. + +.|++|+.|..|+||+... ..-.....+.+|.+.|..++|.|.- .+|++++.|
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 9999641 2 5699999999999999762 2445566699999999999999964 479999999
Q ss_pred CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee
Q 015371 252 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 331 (408)
|++.||-.+....... .+.+.. ....+|...||..|++|++++
T Consensus 233 g~viIwt~~~e~e~wk----------------------------~tll~~---------f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWK----------------------------KTLLEE---------FPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred CcEEEEEecCccCccc----------------------------cccccc---------CCcceEEEEEeccccEEEEec
Confidence 9999998774211111 011111 224567778888899999999
Q ss_pred CCCeEEEEECC
Q 015371 332 SDNSVYIYDLV 342 (408)
Q Consensus 332 ~dg~i~vwd~~ 342 (408)
.|+.|.+|.-.
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999743
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-29 Score=213.51 Aligned_cols=374 Identities=14% Similarity=0.143 Sum_probs=248.9
Q ss_pred ceeeEecCCccEEEeecCc-----eEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeC--CCcEEEEEcCCCeeEE
Q 015371 4 GREVNYSGRGRFSAADSCH-----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ--ESNIKVYNVDKNWKIQ 76 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~--dg~i~iw~~~~~~~~~ 76 (408)
--|++||++|+|++++... .+|.+........+..|+-.|+|++|+|.++|+++.+. |-.|.+|++..+...
T Consensus 81 ~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~- 159 (1080)
T KOG1408|consen 81 LTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSG- 159 (1080)
T ss_pred eeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccc-
Confidence 3589999999999997633 23444444445678899999999999999999998764 567888988765322
Q ss_pred EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee-ee------------------ee------eee
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN-VT------------------IH------KGL 131 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-~~------------------~~------~~~ 131 (408)
........|.+++|+.||.|+++++ +..|++|.++.++...... +. .. ..+
T Consensus 160 ---asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestf 235 (1080)
T KOG1408|consen 160 ---ASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTF 235 (1080)
T ss_pred ---cccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceE
Confidence 2233344799999999999999886 5789999987554110000 00 00 000
Q ss_pred eeecCC--------------------------------------------------------------------------
Q 015371 132 DFSADG-------------------------------------------------------------------------- 137 (408)
Q Consensus 132 ~~~~~~-------------------------------------------------------------------------- 137 (408)
.....+
T Consensus 236 ait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~ 315 (1080)
T KOG1408|consen 236 AITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPK 315 (1080)
T ss_pred EEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccc
Confidence 000000
Q ss_pred ----------------------------C----------------------CCccceEEEEEcCC-----------CCEE
Q 015371 138 ----------------------------D----------------------EDEFGIFSVKFSTD-----------GQEL 156 (408)
Q Consensus 138 ----------------------------~----------------------~~~~~i~~~~~~~~-----------~~~l 156 (408)
. .|...|+.+.--|- ...+
T Consensus 316 ~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF 395 (1080)
T KOG1408|consen 316 NSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF 395 (1080)
T ss_pred ccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccce
Confidence 0 11112222222220 1247
Q ss_pred EEEecCCeEEEEECCCCcceee------------e-------------------------cCcCCCceEEEEecCCCCEE
Q 015371 157 VAAGSDNFIYVYDLQANKCSLR------------I-------------------------PAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~------------~-------------------------~~~~~~v~~l~~~~~~~~~l 199 (408)
++++.|++|++||+..+..-.. + -.....+.+++.+ |+++.|
T Consensus 396 ~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhL 474 (1080)
T KOG1408|consen 396 TTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHL 474 (1080)
T ss_pred eEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCccee
Confidence 7888888888888865211000 0 0123468999999 999999
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC---CCCeEEEeecCCeEEEEeCCCCcCcccccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR---DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 276 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 276 (408)
++|..-|.+++||+. .......+.+|...|.|+.++. ..++|++++.|.-|.+||..................
T Consensus 475 AsGDr~GnlrVy~Lq----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cccCccCceEEEEeh----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 999999999999975 6677778899999999999985 346899999999999999977544333222212221
Q ss_pred ccceeecccccceeeccCCCcce-----------eeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 277 WDYRWMEYPSYARRLKHPHDQSL-----------ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
..+++.........+.....+.+ ..+..+.. .......+.++..|..+++++++.|..|+|||+.+++
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~-t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ-TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceecccccc-ccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 22222222222222222222211 11111111 1112346777888999999999999999999999999
Q ss_pred eeEEEc---cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 346 QVAKLD---FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 346 ~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
....|+ .|.+....+...|.|.||++.+.|.++.++|+.+++-
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence 999996 4667788899999999999999999999999987654
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=216.14 Aligned_cols=243 Identities=16% Similarity=0.264 Sum_probs=207.0
Q ss_pred CCccEEEeecCceEEEEEEecC---------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 11 GRGRFSAADSCHVLSRYLPVNG---------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 11 ~dg~~~~~~~~~~~~~~~~~~~---------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
|+++++.+++.+.+.+.|.... ...++.|.+.|+.++...+++.|++++.|-+|++|+...+. .......
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence 5778899999999888776432 34678899999999999999999999999999999988763 2223345
Q ss_pred ccceeeEEEEEe-CCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 82 KALRWTITDTSL-SPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 82 ~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..|...|.|+++ .++...+|+|+-|+.|.+||++++.......+. .........++..+|.+++.++.|..+++|+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n---~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg 190 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN---NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG 190 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc---ccccccCCCCCccceeeeecCCcceEEEecC
Confidence 678889999999 788999999999999999999977432222211 1112222336677899999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
..+.+++||.++.+.+..+++|+..|.++..+ .+|..+++++.||+|++||++ ..+++.++..|...+.++..+|
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999 999999999999999999976 7889999999999999999999
Q ss_pred CCCeEEEeecCCeEEEEeCCCC
Q 015371 241 DGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
+=..+.+|+.||.|..=|+++.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999984
No 103
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=7e-29 Score=215.24 Aligned_cols=230 Identities=12% Similarity=0.168 Sum_probs=172.0
Q ss_pred eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCc-------
Q 015371 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK------- 174 (408)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------- 174 (408)
|+.++.+++|+..... ....+.. |..+|.+++|+|+ +.+|++|+.|+.|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~--~v~~L~g------------H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--PVIKLKG------------HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred CCceeEEEeeecCCCc--eEEEEcC------------CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 5567788999876542 2333333 4448999999996 7899999999999999997642
Q ss_pred -ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe
Q 015371 175 -CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253 (408)
Q Consensus 175 -~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 253 (408)
++..+.+|...|.+++|+|....+|++++.|++|++||++ .+.....+. |...|.+++|+|+|.+|++++.|+.
T Consensus 116 ~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE
Confidence 2345788999999999994444456899999999999986 444444554 5678999999999999999999999
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 333 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 333 (408)
|++||+++ +..+..+.+|...... ..++...|++++.+|++++.|
T Consensus 191 IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 191 MHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred EEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEEcC
Confidence 99999998 4555667777643322 334444677889999998876
Q ss_pred C----eEEEEECCC-CceeEEEcc--CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 334 N----SVYIYDLVS-GAQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 334 g----~i~vwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
+ .|+|||+++ .+++..+.. +.+.+...-..+++.++++|+.|+.|++|++..+
T Consensus 236 ~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 236 KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 4 799999985 556655532 2333333333455788999999999999999764
No 104
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=1.8e-28 Score=197.81 Aligned_cols=325 Identities=15% Similarity=0.191 Sum_probs=240.7
Q ss_pred ceeeEecCCccEEEeecCceE--------EEEEEecC---ceeeecccCceeEEEEcC--CCCeEEEE--eCCCcEEEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVL--------SRYLPVNG---PWKVDGMNSRVYTSQFSN--DGSFFVAA--SQESNIKVYN 68 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~--------~~~~~~~~---~~~l~~h~~~v~~~~~s~--~~~~l~t~--~~dg~i~iw~ 68 (408)
..|++.+||-...+++..... .+.|+... .+.+......|.|++||+ .|.+|+.- +.+..+.+||
T Consensus 107 ikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWd 186 (626)
T KOG2106|consen 107 IKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWD 186 (626)
T ss_pred eEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhh
Confidence 578999998888776554442 34444333 344556778899999998 35555554 4567799999
Q ss_pred cCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEE
Q 015371 69 VDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVK 148 (408)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 148 (408)
.+.+..........+ .|....|+|.+..|+.....|.+.+|+.+++.......+..... ..-|.|++
T Consensus 187 Wqk~~~~~~vk~sne---~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e----------kk~Vl~v~ 253 (626)
T KOG2106|consen 187 WQKKAKLGPVKTSNE---VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE----------KKFVLCVT 253 (626)
T ss_pred chhhhccCcceeccc---eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc----------ceEEEEEE
Confidence 988765554444433 78999999987777777778999999998876543322211111 13599999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccc------------
Q 015371 149 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF------------ 216 (408)
Q Consensus 149 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~------------ 216 (408)
|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++.. .++.+| +|+.|+.|..||-...
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchhcC
Confidence 999996 8899999999999998877777777999999999998 777655 5999999999982100
Q ss_pred ------------------------ccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 217 ------------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 217 ------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
.-.........+|......++.+|+..++++++.|+.+++|+ ..
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~----------- 398 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH----------- 398 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC-----------
Confidence 000011122346788888999999999999999999999999 22
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
+...+.. ....+.+.+|+|.| .+|.|+..|...+.|.++...+..-..
T Consensus 399 ------------------------k~~wt~~-------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d 446 (626)
T KOG2106|consen 399 ------------------------KLEWTKI-------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD 446 (626)
T ss_pred ------------------------ceeEEEE-------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec
Confidence 1111111 11223345788888 999999999999999998665555544
Q ss_pred CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 353 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
..+++.+.|+|+|.+||.|+.|+.|+||.+...+..
T Consensus 447 -~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 447 -NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred -CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 889999999999999999999999999999876654
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-30 Score=220.48 Aligned_cols=294 Identities=18% Similarity=0.263 Sum_probs=223.3
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe----cccccceeeEEEEEeCC-CCceEEEeecCcEEEEEEC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD----IETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~ 114 (408)
+....+|...++-..++.++.. .++||.+......... .........+..+.|.. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 4456677788998888888765 7889987654221111 11111222466788875 5789999999999999999
Q ss_pred CCCc-eeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 115 GSSA-RESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
.... .+.+..+..| ...++++.|++ ...+|++|+.||.|++||++..+...++.+....|.++.|+
T Consensus 118 nk~~rnk~l~~f~EH------------~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEH------------ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CccccchhhhHhhhh------------ccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 7632 2222333333 44799999998 55688999999999999999999888998889999999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
|..++.|+++.+.|.+++||+| ...++...+.+|.++|.++.|+|++.+|++||.|+.|+|||+.....
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------- 254 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------- 254 (839)
T ss_pred cCCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--------
Confidence 9999999999999999999998 46778888999999999999999999999999999999999986321
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC--CCeEEEEECCCC-ceeEE
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSG-AQVAK 349 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~-~~~~~ 349 (408)
..+.++..- ..+.++.|.|+. ...||+++. |-.|+|||++.. -+..+
T Consensus 255 ------------------------~~~~tInTi---apv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 255 ------------------------KPKHTINTI---APVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred ------------------------cceeEEeec---ceeeeeeeccCc---cchhhhhhccccceEEEEeecccccccee
Confidence 122222211 223345566653 356777664 778999999765 35677
Q ss_pred EccCCCCeeeeeEeC-CCCeEEeecCCCcEEEEeeCCCC
Q 015371 350 LDFHNAPVRDCCWHP-IYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 350 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
+..|...++.++|.. |...|.+++.||+|..-.+.+..
T Consensus 305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 888999999999965 34489999999998776655543
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=179.15 Aligned_cols=284 Identities=23% Similarity=0.335 Sum_probs=212.7
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEe--------------cCc----eeeecccCceeEEEEcCCCCeEEEEeCCCcE
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPV--------------NGP----WKVDGMNSRVYTSQFSNDGSFFVAASQESNI 64 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~--------------~~~----~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i 64 (408)
..|+++|.|.|.+.+.++.....++-.. +++ .+-+.|.+.|+|.+|||+|.++|+|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 3689999999999988887776654321 111 2334789999999999999999999999999
Q ss_pred EEEEcCCC--eeEEEecccccceeeEEEEEeCCC----CceEEEee-cCcEEEEEECCCCceeeeeeeeeeeeeeeecCC
Q 015371 65 KVYNVDKN--WKIQKDIETKALRWTITDTSLSPD----QRFLVYAS-ICAIVNIVDVGSSARESLANVTIHKGLDFSADG 137 (408)
Q Consensus 65 ~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (408)
++.-++.. ......+....|.+.|..++|..+ +..|++++ .|..|.+-|...++. ...+..|.+
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~--~~a~sghtg------- 184 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG--FHALSGHTG------- 184 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc--ceeecCCcc-------
Confidence 99776543 233334556678889999999653 45566554 345566666655543 344444443
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC-------cCCCceEEEEecCCCCEEEEecCCCeEEE
Q 015371 138 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-------HKSDVNTVCFADETGHLIFSGSDDSLCKV 210 (408)
Q Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~l~~~~~dg~i~i 210 (408)
.|.++ ++-++-.+++|+.|.+|++||++-..++..+.. ....|.+++.. |.+++|++|-.|....+
T Consensus 185 -----hilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd-psgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 185 -----HILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD-PSGRLLASGHADSSCML 257 (350)
T ss_pred -----cEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC-CCcceeeeccCCCceEE
Confidence 56655 455788999999999999999998887776632 23678999998 89999999999999999
Q ss_pred EeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeeccccccee
Q 015371 211 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 290 (408)
Q Consensus 211 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (408)
||+| .+..++.+..|...|.++.|+|...++++++.|..|++-|+...-.
T Consensus 258 ydir----g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-------------------------- 307 (350)
T KOG0641|consen 258 YDIR----GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-------------------------- 307 (350)
T ss_pred EEee----CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh--------------------------
Confidence 9987 7889999999999999999999999999999999999999876211
Q ss_pred eccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 291 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
..-++.....|.. ..+.+ .|+|..--+++.+.|.++.+|-+.
T Consensus 308 ----~el~~~vv~ehkd--k~i~~----rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 ----HELPIMVVAEHKD--KAIQC----RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----hcCceEEEEeccC--ceEEE----EecCccceeeeccCcceEEEeccC
Confidence 1122333444442 22333 355567778899999999999763
No 107
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.4e-28 Score=200.31 Aligned_cols=239 Identities=13% Similarity=0.166 Sum_probs=193.5
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCc----eeeeccc-CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGP----WKVDGMN-SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~----~~l~~h~-~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
.+++|||.+.+-+|.+..+....+|..... ..+.|++ ..|.+++|++ +..|.+.+.+|.|.-||+.+.+.....
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe
Confidence 578999998888887766666555554443 2455654 6799999995 556888889999999999998766655
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
....+ .|.+++.+|.+..++.|+.||.+..++...+.......+...++ .|.++.|+|++..++.
T Consensus 107 d~~gg---~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s------------RvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 107 DSNGG---AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS------------RVLSLSWNPTGTKIAG 171 (691)
T ss_pred cCCCc---ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc------------eEEEEEecCCccEEEe
Confidence 44444 89999999999999999999988888888887766655555544 7999999999999999
Q ss_pred EecCCeEEEEECCCCcceeee-------c-CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 159 AGSDNFIYVYDLQANKCSLRI-------P-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~-------~-~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
|+.||.|++||..++...... . ....-|.++.|. ....|++|...|+|.+||. ..+..+..+..|.
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~----~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDS----IFGTLIQSHSCHD 245 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcc----cCcchhhhhhhhh
Confidence 999999999999988766522 1 123346777776 4567999999999999995 5888899999999
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
..|.+++..++++++++++.|+.|..|...+...
T Consensus 246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred cceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999999999999888776544
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-29 Score=187.01 Aligned_cols=289 Identities=16% Similarity=0.191 Sum_probs=212.4
Q ss_pred eeEecCCccEEEeecCceEEEEE---EecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYL---PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
.+.|..+|.++.+.+.+....+| ..+..-++.||++.|+|++.+.+.++|+||+.|.++++||+++++++......
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~- 93 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN- 93 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-
Confidence 57889999988876665544433 44455688999999999999999999999999999999999999777654332
Q ss_pred cceeeEEEEEeCCCCceEEEeec-----CcEEEEEECCCCce-----eeeeeeeeeeeeeeecCCCCCccceEEEEEcCC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASI-----CAIVNIVDVGSSAR-----ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD 152 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (408)
.+|..+.|+++|++++.... .+.|.++|+..... .+...+..+ ...++.+-|.|-
T Consensus 94 ---~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------------~skit~a~Wg~l 158 (327)
T KOG0643|consen 94 ---SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------------DSKITSALWGPL 158 (327)
T ss_pred ---CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC------------ccceeeeeeccc
Confidence 27999999999998887753 46799999975431 112222222 236999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCc-ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC
Q 015371 153 GQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 231 (408)
Q Consensus 153 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 231 (408)
++.|++|..+|.|.+||+++++ .+...+.|...|+.|+++ ++..++++++.|.+-++||.+ ....++++. ...
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~----tl~v~Kty~-te~ 232 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVR----TLEVLKTYT-TER 232 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeecc----ceeeEEEee-ecc
Confidence 9999999999999999999974 455567899999999999 999999999999999999975 556666665 467
Q ss_pred CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeE
Q 015371 232 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 311 (408)
Q Consensus 232 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
++++.+++|....++.|+.-. --|+.+....... -..+.+.....+.+...++|-
T Consensus 233 PvN~aaisP~~d~VilgGGqe---A~dVTTT~~r~GK-----------------FEArFyh~i~eEEigrvkGHF----- 287 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQE---AMDVTTTSTRAGK-----------------FEARFYHLIFEEEIGRVKGHF----- 287 (327)
T ss_pred cccceecccccceEEecCCce---eeeeeeecccccc-----------------hhhhHHHHHHHHHhccccccc-----
Confidence 899999999887777665422 1222221100000 000000001123345556665
Q ss_pred EEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 312 ~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
..+.+++|+|+|+..++|++||.|++.-..
T Consensus 288 -GPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 288 -GPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred -cCcceeEECCCCcccccCCCCceEEEEEec
Confidence 344556899999999999999999998654
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.2e-29 Score=210.97 Aligned_cols=314 Identities=18% Similarity=0.203 Sum_probs=250.1
Q ss_pred ecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCc
Q 015371 19 DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR 98 (408)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 98 (408)
.+...+|.+-.....+++.++...|+++.=+|-=..+|.|..+|+|.|+++..++.+..+.... +.|++++|..||+
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGN 257 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc---cceeEEEeccCCC
Confidence 3444455555566667899999999999999999999999999999999999997776654433 4899999999987
Q ss_pred eE-EEeecCcEEEEEECCCCceeeeeeeeee----ee---------------------eeee------------------
Q 015371 99 FL-VYASICAIVNIVDVGSSARESLANVTIH----KG---------------------LDFS------------------ 134 (408)
Q Consensus 99 ~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~----~~---------------------~~~~------------------ 134 (408)
.+ ++++..|.+.+||++..+......- .| .. ..+.
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 65 5666679999999986543221110 00 00 0000
Q ss_pred --------cCC---------------------------------------------------------------------
Q 015371 135 --------ADG--------------------------------------------------------------------- 137 (408)
Q Consensus 135 --------~~~--------------------------------------------------------------------- 137 (408)
..+
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 000
Q ss_pred ----------------------------CCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee---cCcCCCc
Q 015371 138 ----------------------------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI---PAHKSDV 186 (408)
Q Consensus 138 ----------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v 186 (408)
......+++++.++.|++.+.|+..|.|-+|++++|-....+ +.|..+|
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCce
Confidence 001236888999999999999999999999999999888888 5899999
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
+.++.. .-++.+++++.+|.+++||.. .......+. -...+.++..+.....++.+..|-.|+++|..+
T Consensus 497 ~gla~D-~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t----- 565 (910)
T KOG1539|consen 497 TGLAVD-GTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT----- 565 (910)
T ss_pred eEEEec-CCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh-----
Confidence 999998 778899999999999999974 333444333 456788888988888999999999999999987
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
.+.++.+.+|.... .+.+|||||++|++++.|++|++||+.++.+
T Consensus 566 -----------------------------~kvvR~f~gh~nri------td~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 566 -----------------------------RKVVREFWGHGNRI------TDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred -----------------------------hhhhHHhhccccce------eeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 56678888888543 4458999999999999999999999999999
Q ss_pred eEEEccCCCCeeeeeEeCCCCeEEeecCC-CcEEEEee
Q 015371 347 VAKLDFHNAPVRDCCWHPIYPMLISSSWD-CNIVRWEI 383 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~ 383 (408)
+..+. -..+.+++.|+|+|.+|||+..| .-|++|.=
T Consensus 611 ID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 611 IDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 98886 46789999999999999999998 67999953
No 110
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.5e-30 Score=205.53 Aligned_cols=240 Identities=20% Similarity=0.324 Sum_probs=189.1
Q ss_pred eeEEEEEeCCCCce-EEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 86 WTITDTSLSPDQRF-LVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 86 ~~v~~~~~~~~~~~-l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
..|.+++|+|...+ +|+++ .-.+.+|+..+..... .+...+. .+.++.|..||+++++|+..|.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k--~~srFk~------------~v~s~~fR~DG~LlaaGD~sG~ 91 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK--TFSRFKD------------VVYSVDFRSDGRLLAAGDESGH 91 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh--hHHhhcc------------ceeEEEeecCCeEEEccCCcCc
Confidence 37999999996544 44443 4678999987665422 2222222 5999999999999999999999
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC-C
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-R 243 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 243 (408)
|+++|+.+...+..+.+|+.++....|+|.++..+++|+.|+.+++||+. +......+.+|++.|.+.+++|-. .
T Consensus 92 V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s----~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 92 VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS----TAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC----CcEEEEEecCCcceeEeeccccCCCe
Confidence 99999887777888999999999999998889999999999999999975 344455789999999999999964 4
Q ss_pred eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC
Q 015371 244 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323 (408)
Q Consensus 244 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (408)
.+++|+.||.|++||++... ..+..+..... +-+..+-|.
T Consensus 168 ivvtGsYDg~vrl~DtR~~~---------------------------------~~v~elnhg~p-------Ve~vl~lps 207 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLT---------------------------------SRVVELNHGCP-------VESVLALPS 207 (487)
T ss_pred EEEecCCCceEEEEEeccCC---------------------------------ceeEEecCCCc-------eeeEEEcCC
Confidence 89999999999999999831 22333332221 112234556
Q ss_pred CcEEEEeeCCCeEEEEECCCC-ceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 324 QKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
|..|++++.+ .|++||+.+| +.+..+..|...|+|+.+..++..|++++-|+.|++||+.+
T Consensus 208 gs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 208 GSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 8889988754 6999999865 44555555999999999999999999999999999999654
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=190.57 Aligned_cols=244 Identities=18% Similarity=0.254 Sum_probs=181.9
Q ss_pred cceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 83 ALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 83 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
..+..|.+++||| ...++++++.||+||+|+++......-.... .|..+|.+++|+.||..+++|+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~------------~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ------------SHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh------------ccCCCeEEEEEccCCceEEeecc
Confidence 3455899999999 5556668999999999999874221112222 23448999999999999999999
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCC--CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG--HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
|+.+++||+.+++ ...+..|.++|.++.|- +.. ..|++||.|.+|++||+| ...++.++. -.+.+.++..-
T Consensus 93 Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 93 DKQAKLWDLASGQ-VSQVAAHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYAADVL 165 (347)
T ss_pred CCceEEEEccCCC-eeeeeecccceeEEEEe-cCCCcceeEecccccceeecccC----CCCeeeeee-ccceeeehhcc
Confidence 9999999999995 56677899999999998 444 489999999999999987 555555554 34567776654
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccc-ceeeEEEEEeec
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSP 318 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 318 (408)
..+++++..++.|.+|++++...... .+. ......+++
T Consensus 166 --~pm~vVata~r~i~vynL~n~~te~k------------------------------------~~~SpLk~Q~R~v--- 204 (347)
T KOG0647|consen 166 --YPMAVVATAERHIAVYNLENPPTEFK------------------------------------RIESPLKWQTRCV--- 204 (347)
T ss_pred --CceeEEEecCCcEEEEEcCCCcchhh------------------------------------hhcCcccceeeEE---
Confidence 45788888899999999987332111 111 011111222
Q ss_pred cccCCCcEEEEeeCCCeEEEEECCCC--ceeEEEccCCC---------CeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 319 EYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNA---------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 319 ~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
+.-+|....|.|+-+|.+.+..+..+ +.-..++.|.. .|++++|+|....|+|+|.||++.+||-...
T Consensus 205 a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 205 ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 33345666799999999999999876 44455666652 5788999999999999999999999997543
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.8e-29 Score=221.71 Aligned_cols=283 Identities=15% Similarity=0.170 Sum_probs=219.6
Q ss_pred ceeeEecCCccEEEeecCce-----EEEEEEec------------CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEE
Q 015371 4 GREVNYSGRGRFSAADSCHV-----LSRYLPVN------------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKV 66 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~-----~~~~~~~~------------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~i 66 (408)
+-+++.+|||..+++++... +|...+.. ...++..|.+.|+|+.|+|||++||+|++|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 34788999999999988444 44433322 12356689999999999999999999999999999
Q ss_pred EEcCC---C------------eeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 67 YNVDK---N------------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 67 w~~~~---~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
|.... + +.........+|...|..++|+|++.+|++++.|++|.+|+..+.+ ....+..|..
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~s- 172 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQS- 172 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--eeeeeecccc-
Confidence 99873 0 1222344556788899999999999999999999999999998873 4555666655
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCc------CCCceEEEEecCCCCEEEEecC-
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH------KSDVNTVCFADETGHLIFSGSD- 204 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~~~~~- 204 (408)
.|..+.|.|-|++|++-+.|++|++|+..+....+.+.++ ......+.|+ |+|.+|++...
T Consensus 173 -----------~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS-PDG~~las~nA~ 240 (942)
T KOG0973|consen 173 -----------LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS-PDGHHLASPNAV 240 (942)
T ss_pred -----------cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-CCcCeecchhhc
Confidence 6999999999999999999999999998776666666443 2356789999 99999998643
Q ss_pred ---CCeEEEEeccccccCCccceeeecccCCeEEEEecCC-------------CC----eEEEeecCCeEEEEeCCCCcC
Q 015371 205 ---DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-------------GR----YFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 205 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~d~~i~iwd~~~~~~ 264 (408)
-.++.|.+. ...+.-..+.+|..++.++.|+|. .+ .+++|+.|++|.||.....
T Consensus 241 n~~~~~~~IieR----~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-- 314 (942)
T KOG0973|consen 241 NGGKSTIAIIER----GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-- 314 (942)
T ss_pred cCCcceeEEEec----CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC--
Confidence 336788873 466777889999999999999981 11 6789999999999998552
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
+++.....- ....+..++|+|||..|++++.||+|.++.++..
T Consensus 315 --------------------------------RPl~vi~~l-----f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 315 --------------------------------RPLFVIHNL-----FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --------------------------------Cchhhhhhh-----hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 222221111 1123456689999999999999999999998653
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=202.94 Aligned_cols=285 Identities=18% Similarity=0.220 Sum_probs=210.6
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCc-------eeee-cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE-
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGP-------WKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI- 75 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-------~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~- 75 (408)
-++++-|.|..+++++.++...+|+.+.. ..|. .-...|.+++||+.|..|++.+.....+|+|-+..+..
T Consensus 171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 171 SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred EEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 36788899999999999999999987653 1222 33467999999999999888888889999996543222
Q ss_pred --------EEecccccceeeEEEEEeCCCC-ceEEEeecCcEEEEEECCCCceee-eeeeeeeeeeeeecCCCCCccceE
Q 015371 76 --------QKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARES-LANVTIHKGLDFSADGDEDEFGIF 145 (408)
Q Consensus 76 --------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 145 (408)
.......+|...++|.+|+|+. ..+++++.||++|+||+...+... +...... .+...+++
T Consensus 251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~---------~g~Rv~~t 321 (641)
T KOG0772|consen 251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA---------GGKRVPVT 321 (641)
T ss_pred eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC---------CCcccCce
Confidence 2234467899999999999954 578899999999999998765321 1111111 12344799
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCcce---eeecCcCC--CceEEEEecCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 146 SVKFSTDGQELVAAGSDNFIYVYDLQANKCS---LRIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 146 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~--~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
.++|++||++||+|+.||.|.+|+..+.... ..-.+|.. .|+|+.|+ .++++|++-+.|+++++||+|. ..
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq---~k 397 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQ---FK 397 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec-cccchhhhccCCCceeeeeccc---cc
Confidence 9999999999999999999999998544322 22256776 99999999 9999999999999999999984 44
Q ss_pred ccceeeeccc--CCeEEEEecCCCCeEEEeec------CCeEEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 221 RANGVLMGHL--EGITFIDSRRDGRYFISNGK------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 221 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
+++....+-. -+-+.++|+|+.++|++|.. .|.+.+||..+..
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d----------------------------- 448 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD----------------------------- 448 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee-----------------------------
Confidence 5555544432 34577899999999999865 5779999987732
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
.+..+.-. ...+.++.|.| .-+.|++|+.||.+++|--.
T Consensus 449 -----~v~ki~i~--~aSvv~~~Whp----kLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 -----TVYKIDIS--TASVVRCLWHP----KLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred -----eEEEecCC--CceEEEEeecc----hhhheeeecCCCceEEEECc
Confidence 22222222 23444555554 46789999999999987543
No 114
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1e-28 Score=206.45 Aligned_cols=330 Identities=19% Similarity=0.268 Sum_probs=247.0
Q ss_pred eeeEecCCc---cEEEeecCceEEEEEEecCc----------------------------------eeeecccCceeEEE
Q 015371 5 REVNYSGRG---RFSAADSCHVLSRYLPVNGP----------------------------------WKVDGMNSRVYTSQ 47 (408)
Q Consensus 5 ~~~~~s~dg---~~~~~~~~~~~~~~~~~~~~----------------------------------~~l~~h~~~v~~~~ 47 (408)
|.|+|..-+ .++++++++...++|..... ..+.||++.|+++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 566666443 47888888887776653110 12349999999999
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec----ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc-eeee
Q 015371 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKDI----ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA-RESL 122 (408)
Q Consensus 48 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~-~~~~ 122 (408)
|+|.+..|.+++.|.++.+|..++...+.... ...+.........|+|+++.+++-+..|..++|...... -...
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~ 354 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQE 354 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeec
Confidence 99999999999999999999987763332221 122233457888999999999999999999999832221 1111
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC----cceeeecCcCCCceEEEEecCCCCE
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN----KCSLRIPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~ 198 (408)
.. ..+|...|.+++|+|.|++|++.+.|.+-+++---.. ..+.+-+-|...++|+++- +....
T Consensus 355 ~~------------iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v-n~~~~ 421 (764)
T KOG1063|consen 355 PV------------ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV-NEDLQ 421 (764)
T ss_pred cc------------cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc-cCCce
Confidence 22 2345668999999999999999999999999865411 1222335688999999998 55778
Q ss_pred EEEecCCCeEEEEecccc---------------------------------------ccCC-------------------
Q 015371 199 IFSGSDDSLCKVWDRRCF---------------------------------------ISKG------------------- 220 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~---------------------------------------~~~~------------------- 220 (408)
+++|.+...+|+|+.... ...+
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 899999999999984310 0000
Q ss_pred --------------ccceeeecccCCeEEEEecCCCCeEEEeecCC-----eEEEEeCCCCcCcccccccccccccccee
Q 015371 221 --------------RANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRKMSSNTTDNSRLRDYDWDYRW 281 (408)
Q Consensus 221 --------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 281 (408)
..+..+-+|.-.|.+++.+|+++++++++... .|++|+..+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-------------------- 561 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-------------------- 561 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--------------------
Confidence 01223457889999999999999999988743 499999877
Q ss_pred ecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc----eeEEEccCCCCe
Q 015371 282 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA----QVAKLDFHNAPV 357 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v 357 (408)
...+..+.+|+...+ .++|||||++|++.+.|.++.+|...... .....+.|+.-|
T Consensus 562 --------------W~~~~~L~~HsLTVT------~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII 621 (764)
T KOG1063|consen 562 --------------WLQVQELEGHSLTVT------RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII 621 (764)
T ss_pred --------------hhhhheecccceEEE------EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE
Confidence 445567788884444 34799999999999999999999975432 223467899999
Q ss_pred eeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 358 RDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 358 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.++.|+|++.+++|+|.|..|++|..+...
T Consensus 622 WdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 622 WDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999999999999999999999998763
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=185.53 Aligned_cols=263 Identities=17% Similarity=0.260 Sum_probs=201.3
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCc--eEEEeecCcEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR--FLVYASICAIVN 110 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 110 (408)
.+.+..|.+.|++++.+ +.++|+|+.|-+|+|||+....++..+.. |.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~---HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS---HAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec---cccceEEEEecCCcchhheeeecCCCcEE
Confidence 35677999999999987 89999999999999999998766665544 455899999998764 899999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
+|+...-. ....++.|+. .|+.++.+|.+++.++.+.|+.++.||+-.|+.-..++- ....+.+.
T Consensus 111 iw~~~~W~--~~~slK~H~~------------~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~ 175 (362)
T KOG0294|consen 111 IWRVGSWE--LLKSLKAHKG------------QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVS 175 (362)
T ss_pred EEEcCCeE--Eeeeeccccc------------ccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeE
Confidence 99997663 3555666655 799999999999999999999999999988876555442 33345599
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
|+ +.+.+++.+..+ .|-+|.+. .......+. ....+.++.|. ++..|++|+.|+.|.+||...
T Consensus 176 w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds--------- 238 (362)
T KOG0294|consen 176 WS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDS--------- 238 (362)
T ss_pred Ec-CCCCEEEEEecc-EEEEEecc----cHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCC---------
Confidence 99 888888887766 68889864 333333322 22456677776 567899999999999999886
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC-----c
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-----A 345 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----~ 345 (408)
..+...+.+|......+..... |++.||++++.||.|++||+... +
T Consensus 239 -------------------------~~~~~~~~AH~~RVK~i~~~~~----~~~~~lvTaSSDG~I~vWd~~~~~k~~~~ 289 (362)
T KOG0294|consen 239 -------------------------DTPLTEFLAHENRVKDIASYTN----PEHEYLVTASSDGFIKVWDIDMETKKRPT 289 (362)
T ss_pred -------------------------CccceeeecchhheeeeEEEec----CCceEEEEeccCceEEEEEccccccCCcc
Confidence 4667788888866655544433 35889999999999999999765 3
Q ss_pred eeEEEccCCCCeeeeeE
Q 015371 346 QVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 346 ~~~~~~~~~~~v~~~~~ 362 (408)
++..+.. ...++|+..
T Consensus 290 ~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 290 LLAELNT-NVRLTCLRV 305 (362)
T ss_pred eeEEeec-CCccceeee
Confidence 4455443 445666544
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=205.29 Aligned_cols=250 Identities=17% Similarity=0.215 Sum_probs=204.1
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
....|.+.+..+.|-++...|++|+.|..|++|++..++......+.+..+ +|+.+.|.+++++++++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g------------~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG------------NITSIDFDSDNKHVIAA 237 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC------------CcceeeecCCCceEEee
Confidence 345677899999999999999999999999999998877544444444433 79999999999999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
+.|+.+++|++.+.+...++.+|+..|+++.|. .....+++|+.|.+|++||+. ...+.++.. ....+..|..+
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceEec
Confidence 999999999999999999999999999999998 555569999999999999986 344444332 23445556555
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
...+++|..|+.|++||++. ..+......+. .+.++.
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs----------------------------------~~~~~sv~~gg-------~vtSl~ 348 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRS----------------------------------ADKTRSVPLGG-------RVTSLD 348 (459)
T ss_pred --ceeeeecccccceEEEeccC----------------------------------CceeeEeecCc-------ceeeEe
Confidence 56788999999999999998 33344444433 334557
Q ss_pred ccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC----CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH----NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
.+++|..|.+++.|.++.+.|+++.+..+.+.+. ....+.+.|||++.|+++||.||.|+||++.+++-+.
T Consensus 349 ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 349 LSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred eccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 7888999999999999999999999988888542 2348899999999999999999999999999876643
No 117
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=8.9e-29 Score=205.01 Aligned_cols=297 Identities=21% Similarity=0.240 Sum_probs=216.1
Q ss_pred EEEEcC---CCCeEEEEeCCCcEEEEEcCCCe---eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 45 TSQFSN---DGSFFVAASQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 45 ~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
+..|++ ....||.+..||.|.++|..... +...+.....|...|..+.|.|....|++++.|.++++||+.+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366765 34689999999999999976531 112234456678899999999977789999999999999999988
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCc--------------------c--
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK--------------------C-- 175 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------------------~-- 175 (408)
.........|.. .+.+++|.+. ...|++|+.||.|.|||++-.. +
T Consensus 134 l~G~~~~~GH~~------------SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 134 LVGGRLNLGHTG------------SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eecceeeccccc------------ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 765554444444 8999999995 4578899999999999986322 0
Q ss_pred -----eeeecCcCCCceE---EEEecCCCCEEEEecC-CCeEEEEeccccccCC--cc--ceeeecc---cCCeEEEEec
Q 015371 176 -----SLRIPAHKSDVNT---VCFADETGHLIFSGSD-DSLCKVWDRRCFISKG--RA--NGVLMGH---LEGITFIDSR 239 (408)
Q Consensus 176 -----~~~~~~~~~~v~~---l~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~--~~--~~~~~~~---~~~i~~~~~~ 239 (408)
+..-..+...|.+ +.+. .|...|++++. |+.|+|||+|...... ++ ...+..| .-.+.++...
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred hhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 0111233344444 3444 68888998887 9999999998532221 11 1222223 3467788888
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
..|.+|.+.+.|+.|++|++..... .++..+.++......... .
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~vks----~ 324 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYVKS----E 324 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeeeee----e
Confidence 8889998888899999999988432 344445555433333332 4
Q ss_pred ccCCCcEEEEeeCCCeEEEEECCCCc-eeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCCCCCC
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
.+||+.++++|+.|...++|.+.+.+ ....+.+|...|++++|.|..- -++|++.|..+++|++..+.+..
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 67889999999999999999998865 4556679999999999987543 57788999999999997765543
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.8e-27 Score=192.11 Aligned_cols=332 Identities=15% Similarity=0.210 Sum_probs=233.8
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC--ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEE-----
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG--PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK----- 77 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~----- 77 (408)
.|+.|.+||..+..++...+.-+-+... .++...|.+.|.+++.-.+|.+|- |+.|+.|..||-+ -.++..
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe 327 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPE 327 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-ccccccccCch
Confidence 4889999999887766555433333222 223449999999999999998655 9999999999932 111000
Q ss_pred ---------------------------------ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee
Q 015371 78 ---------------------------------DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 78 ---------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
.+...+|......++.+|+.+.+++++.|+.+++|+ ..+......
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~ 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE
Confidence 011123444677888999999999999999999999 333322222
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD 204 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~ 204 (408)
+. .++.|+.|+|.| .++.|+..|...+.|.++...+..-.. ..+++++.|+ |++.+||.|+.
T Consensus 406 ~~---------------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvgs~ 467 (626)
T KOG2106|consen 406 IE---------------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVGSH 467 (626)
T ss_pred ec---------------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEecC
Confidence 11 168999999999 899999999999999998665554444 8999999999 99999999999
Q ss_pred CCeEEEEeccccccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 205 DSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
|+.|++|.+.. .+..... -..+..+|+.+.|++|+++|.+-+-|-.|..|.... .+.... .+...|......
T Consensus 468 d~~iyiy~Vs~---~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~ts---~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 468 DNHIYIYRVSA---NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQITS---VKDVKWATYTCT 540 (626)
T ss_pred CCeEEEEEECC---CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Ccccce---ecceeeeeeEEE
Confidence 99999999862 2322222 223448999999999999999999999999993322 211111 223333221111
Q ss_pred ccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC---ceeEEEccCCCCeeee
Q 015371 284 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---AQVAKLDFHNAPVRDC 360 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~ 360 (408)
..-. .+-+.. .+ -+...+-+.+.+++|+|.+.|.|++|...-- ....++.+|++.|+++
T Consensus 541 lGF~-------------v~g~s~--~t---~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V 602 (626)
T KOG2106|consen 541 LGFE-------------VFGGSD--GT---DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNV 602 (626)
T ss_pred EEEE-------------EecccC--Cc---hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEE
Confidence 0000 000000 00 0111134456889999999999999987543 3456778999999999
Q ss_pred eEeCCCCeEEeecCCCcEEEEee
Q 015371 361 CWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 361 ~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+|..+...|++.+.|..|..|++
T Consensus 603 ~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 603 AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEeeCCceEEecCCCceEEEEEe
Confidence 99998888888889999999987
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-29 Score=182.87 Aligned_cols=260 Identities=21% Similarity=0.270 Sum_probs=201.0
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCce-eeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEE
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVA 158 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~ 158 (408)
..|+..|..+...--|++|++++.|++|+|+.+++... ..+..+..|.+ ||..++|.. -|..|++
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G------------PVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG------------PVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC------------CeeEEeecccccCcEeeE
Confidence 34666788888888899999999999999999987765 55556655555 999999976 7999999
Q ss_pred EecCCeEEEEECCCCcce--eeecCcCCCceEEEEecCC-CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 159 AGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
++.||.|.||.-++++-. .....|...|++++|.|.+ +-+|++++.||.|.|.+.+.. ...........|.-.+++
T Consensus 76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccce
Confidence 999999999998887433 3446799999999999543 567899999999999998732 123344556789999999
Q ss_pred EEecCC---C-----------CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee
Q 015371 236 IDSRRD---G-----------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 301 (408)
Q Consensus 236 ~~~~~~---~-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
++|.|. | +.|++|+.|..|+||+..+.. ...-..
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--------------------------------w~~e~~ 202 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--------------------------------WKLERT 202 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------------hhhhhh
Confidence 999985 4 469999999999999988731 122334
Q ss_pred eecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC-c--eeEEEccCCCCeeeeeEeCCCCeEEeecCCCcE
Q 015371 302 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-A--QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 378 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 378 (408)
+.+|... +....|+|...--..+||+++.||+|.||-.... + ....+......+..+.||..|+.|+.++.|+.|
T Consensus 203 l~~H~dw--VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 203 LEGHKDW--VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred hhhcchh--hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 6777633 3345566665555679999999999999987522 1 122233456789999999999999999999999
Q ss_pred EEEeeCCCCC
Q 015371 379 VRWEIPGIGE 388 (408)
Q Consensus 379 ~iw~~~~~~~ 388 (408)
.+|.-+...+
T Consensus 281 tlwke~~~Gk 290 (299)
T KOG1332|consen 281 TLWKENVDGK 290 (299)
T ss_pred EEEEeCCCCc
Confidence 9998665443
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.1e-28 Score=208.21 Aligned_cols=278 Identities=14% Similarity=0.193 Sum_probs=214.2
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
.|++.-+.++|.|+|.+|.+++.||.|++|+............. +...|.+++. ++.+|++++.+++|.+|.+..+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 78888999999999999999999999999998766322222221 3335666665 4669999999999999999887
Q ss_pred ceeeee-eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCC
Q 015371 118 ARESLA-NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 196 (408)
+...+. .+.. ++.+++|+-+|++++.|+.|-.|++.++.+......+++|.++|.++.|+ |++
T Consensus 87 ~~~~iL~Rftl---------------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~~ 150 (933)
T KOG1274|consen 87 EEDTILARFTL---------------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PKG 150 (933)
T ss_pred Cccceeeeeec---------------cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-CCC
Confidence 664222 2211 69999999999999999999999999999999999999999999999999 899
Q ss_pred CEEEEecCCCeEEEEeccccccCCccceeeec--------ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccc
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--------HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 268 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 268 (408)
++||+.+.||.|++||+. .+.....+.+ ....+..++|+|++..|+..+.|+.|++|+....
T Consensus 151 ~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w------ 220 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW------ 220 (933)
T ss_pred CEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc------
Confidence 999999999999999975 4444443332 1345678899999988999999999999998873
Q ss_pred ccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
.....+........ .....|||+|+|||+++.||.|.|||.++.+.
T Consensus 221 ----------------------------e~~f~Lr~~~~ss~----~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-- 266 (933)
T KOG1274|consen 221 ----------------------------ELQFKLRDKLSSSK----FSDLQWSPNGKYIAASTLDGQILVWNVDTHER-- 266 (933)
T ss_pred ----------------------------eeheeecccccccc----eEEEEEcCCCcEEeeeccCCcEEEEecccchh--
Confidence 33333333222222 23346888899999999999999999987322
Q ss_pred EEccCCCCeeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 349 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
......|.+++|.|+.+.+-.-...|...+|
T Consensus 267 --~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 --HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred --ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 2235679999999998855444444444444
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.8e-28 Score=203.91 Aligned_cols=345 Identities=13% Similarity=0.173 Sum_probs=249.1
Q ss_pred eEecCCccEEEeecCceEEEEEEecCc------eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcC-CCeeEEEec
Q 015371 7 VNYSGRGRFSAADSCHVLSRYLPVNGP------WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD-KNWKIQKDI 79 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~~~~~~~~~~------~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~ 79 (408)
.-|+|++.++.+.+...-++.|..+.+ ..+.||.+.|..++|+|.|.+|.+.+.|.+-|++-.- ....-+...
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence 357899988888887777888874332 2466999999999999999999999999999998755 222344555
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeee-----------------eee----------e---eee
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL-----------------ANV----------T---IHK 129 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~-----------------~~~----------~---~~~ 129 (408)
...-|...++|++|-+....+++|.....+|+|+....-.... ... . ...
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 5666777899999998777889999999999998642100000 000 0 000
Q ss_pred eee----ee----------------------------cCCCCCccceEEEEEcCCCCEEEEEecC-----CeEEEEECCC
Q 015371 130 GLD----FS----------------------------ADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQA 172 (408)
Q Consensus 130 ~~~----~~----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 172 (408)
+.. .. ....+|...|.+++.+|+++++++++.. ..|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 000 00 0003788899999999999999999874 4699999999
Q ss_pred CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC
Q 015371 173 NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 252 (408)
Q Consensus 173 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 252 (408)
...+..+.+|.-.|+.|+|+ |++++|++.+.|+++.+|...............+.|+.-|....|+|++.+|+|+|.|.
T Consensus 562 W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhheecccceEEEEEEEC-CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 88888999999999999999 99999999999999999996432222233344778999999999999999999999999
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC-cEEEEee
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGS 331 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~ 331 (408)
+|++|....... +.+..+........+....+.+.+.++. ..++.|-
T Consensus 641 ~VkVW~~~~~~d--------------------------------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 641 KVKVWEEPDLRD--------------------------------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred eEEEEeccCchh--------------------------------hhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 999999887321 1111111111112222333444444433 4788999
Q ss_pred CCCeEEEEECCCCc------------eeEEEccCCCCeeeeeEeCCC--------C--eEEeecCCCcEEEEeeC
Q 015371 332 SDNSVYIYDLVSGA------------QVAKLDFHNAPVRDCCWHPIY--------P--MLISSSWDCNIVRWEIP 384 (408)
Q Consensus 332 ~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~--------~--~l~s~~~dg~v~iw~~~ 384 (408)
+.|.|.+|....-. ......+|...|+.+.|.|.. . .|++|++|..++++++.
T Consensus 689 e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 689 EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99999999865111 011123567889999999762 2 57999999999999875
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.4e-28 Score=184.31 Aligned_cols=291 Identities=20% Similarity=0.290 Sum_probs=209.6
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeee
Q 015371 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (408)
-.|+.|++.|.+||+|..||.|.|||+.+.. +. .....|..+|++++||+||+.|++++.|..+.+||+..+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-ia--r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IA--RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hh--hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999998864 22 23456777999999999999999999999999999998875433
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEecCCeEEEEECCCCcceeeec-CcC----CCceEEEEecCCC
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIP-AHK----SDVNTVCFADETG 196 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~----~~v~~l~~~~~~~ 196 (408)
..+.. +|....|+|... ..++.-.+..-.+.++..++.. .+. ... ....+..|. +.|
T Consensus 103 irf~s---------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fd-r~g 165 (405)
T KOG1273|consen 103 IRFDS---------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFD-RRG 165 (405)
T ss_pred EEccC---------------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccccccccc-CCC
Confidence 33222 699999999443 3333333444555555543211 111 111 111223466 889
Q ss_pred CEEEEecCCCeEEEEeccccccCCccceeeeccc-CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
+++++|...|.+.++|.. +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++........
T Consensus 166 ~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~------- 234 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD------- 234 (405)
T ss_pred CEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc-------
Confidence 999999999999999964 667777776655 78899999999999999999999999998852211000
Q ss_pred cccceeecccccceeeccCCCcceeeeecccceeeEEEEEe-eccccCCCcEEEEeeC-CCeEEEEECCCCceeEEEccC
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF-SPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFH 353 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~ 353 (408)
..+ -..|.....+.+..| ..+||.+|.|++.|+. ...++||.-..|.+++.+.+.
T Consensus 235 ---------------------~e~--e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 235 ---------------------GEV--EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred ---------------------CCc--ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence 000 000110011111111 2267888999998875 356999999999999999887
Q ss_pred C-CCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 354 N-APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 354 ~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+ ....++.|+|-...+++- ..|.|+||.....+.
T Consensus 292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred chhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 7 567889999998888887 788999998865433
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=194.03 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=203.3
Q ss_pred EeCC-CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEECCCCceeeeeeeeeeeeeeeec
Q 015371 58 ASQE-SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTIHKGLDFSA 135 (408)
Q Consensus 58 ~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (408)
++.| .++.+||+.++....+....... .-.++..- .+.+++++. ....+.+|.+....... ......+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a--~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg----- 82 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLA--QAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPG----- 82 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccc--cchhhhhh-chhheeeecccCccccccccCchhhhh--hhccccc-----
Confidence 3444 45999999999766554433111 01111111 235666654 34578999987655432 1111112
Q ss_pred CCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccc
Q 015371 136 DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215 (408)
Q Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (408)
++.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ .|+.+|++|+.||.|.+|++-.
T Consensus 83 -------~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 83 -------PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred -------ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEe
Confidence 69999999999999999899999999999999999999999999999999 9999999999999999998642
Q ss_pred c-----ccCCccceeeecccCCeEEEEecCC--CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccc
Q 015371 216 F-----ISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 288 (408)
Q Consensus 216 ~-----~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (408)
. ....++...+..|.-+|+.+...+. ..++++++.|.++++||+..+
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-------------------------- 208 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-------------------------- 208 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--------------------------
Confidence 2 1245678889999999999988764 358999999999999999873
Q ss_pred eeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC----------------ceeEEEcc
Q 015371 289 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----------------AQVAKLDF 352 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----------------~~~~~~~~ 352 (408)
..+..+... ..+.+.+.+|.++.+++|+.+|.|.+.++.+. ..+..+.+
T Consensus 209 --------~LLlti~fp-------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 209 --------VLLLTITFP-------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred --------eeeEEEecC-------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 223322221 12233356667999999999999999887542 23556678
Q ss_pred CCC--CeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 353 HNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 353 ~~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
|.+ .|+|++.+-||.+|++|+.||.|+|||+.+.
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 888 9999999999999999999999999998763
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-28 Score=201.71 Aligned_cols=306 Identities=18% Similarity=0.233 Sum_probs=227.8
Q ss_pred EEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCc--eEEEe
Q 015371 26 RYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR--FLVYA 103 (408)
Q Consensus 26 ~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~ 103 (408)
+-+|......+.||++.|.|+...|.|.+||+|+.||+|+||.+.++.++....... .|.|++|+|.+. .||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEE
Confidence 344555567889999999999999999999999999999999999999888765433 699999999764 44444
Q ss_pred ecCcEEEEEECCCCceee-------eeeeeeeee-----eeeec-----------CCCCCccceEEEEEcCCCCEEEEEe
Q 015371 104 SICAIVNIVDVGSSARES-------LANVTIHKG-----LDFSA-----------DGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~-------~~~~~~~~~-----~~~~~-----------~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
... .+.+.+..-+.... ......... ..... ..-.|..+|..+.|+..|.+|++..
T Consensus 462 ~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 VGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred ecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 433 35555433221100 000000000 00000 0113455799999999999999886
Q ss_pred c---CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 161 S---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 161 ~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
. ...|.|+++.......-|....+.|.++.|+ |...+|++++. ..|++||+- ....++.+......|..++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~----kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLS----KQELVKKLLTGSKWISSMS 614 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEec-cceEEEehh----HHHHHHHHhcCCeeeeeee
Confidence 5 3579999998877666676677889999999 66666666664 579999974 5677777777778899999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
.+|.|..|+.++.|+.+..+|+.-. .++.+.+..|. ..+.+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldls---------------------------------skPyk~lr~H~------~avr~ 655 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLS---------------------------------SKPYKTLRLHE------KAVRS 655 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccC---------------------------------cchhHHhhhhh------hhhhh
Confidence 9999999999999999999999863 24556666666 34445
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECC------CC---ceeEEEccCCCC----eeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLV------SG---AQVAKLDFHNAP----VRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
++|++.-.++++|+.||.+.||.-. .. -++..+++|... |.++.|+|...+|++++.||+|++|
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 5788888999999999999998532 11 245677888654 9999999999999999999999998
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=6.4e-28 Score=182.88 Aligned_cols=241 Identities=18% Similarity=0.272 Sum_probs=183.8
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
...|.++.|+|.+..|++++.||++++||+.......... |..++.+++|.++ ..+++|+.||.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------------~~~plL~c~F~d~-~~~~~G~~dg~ 76 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------------HGAPLLDCAFADE-STIVTGGLDGQ 76 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------------cCCceeeeeccCC-ceEEEeccCce
Confidence 4479999999999999999999999999998774432221 2337999999874 46999999999
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 244 (408)
|+.+|+.++.. ..+..|..+|.|+.++ +....+++|+.|++|++||.|. ......+. ....|.++... ++.
T Consensus 77 vr~~Dln~~~~-~~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~----~~~~~~~d-~~kkVy~~~v~--g~~ 147 (323)
T KOG1036|consen 77 VRRYDLNTGNE-DQIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRN----KVVVGTFD-QGKKVYCMDVS--GNR 147 (323)
T ss_pred EEEEEecCCcc-eeeccCCCceEEEEee-ccCCeEEEcccCccEEEEeccc----cccccccc-cCceEEEEecc--CCE
Confidence 99999998864 4566799999999999 7788999999999999999872 22233332 34478888776 778
Q ss_pred EEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC
Q 015371 245 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 324 (408)
Q Consensus 245 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 324 (408)
|++|+.|..+.+||+++....... ........+++ +++-|++
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~-----------------------------------reS~lkyqtR~---v~~~pn~ 189 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQR-----------------------------------RESSLKYQTRC---VALVPNG 189 (323)
T ss_pred EEEeecCceEEEEEcccccchhhh-----------------------------------ccccceeEEEE---EEEecCC
Confidence 999999999999999985432211 01111122222 2444567
Q ss_pred cEEEEeeCCCeEEEEECCCC----ceeEEEccCCC---------CeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 325 KYIYTGSSDNSVYIYDLVSG----AQVAKLDFHNA---------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.=.++++-||.|.+=.+... +....++.|.. +|++++|+|-...|+||+.||.|.+||+...++
T Consensus 190 eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 190 EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 77899999999988766655 44556666632 799999999999999999999999999987554
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-26 Score=193.23 Aligned_cols=370 Identities=13% Similarity=0.151 Sum_probs=249.9
Q ss_pred ceeeEecCCccEEEeecCc--eEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
...|+|++.+++..++... ..|++......+.+....+.|++++.+|.++.++.|+.||.+..++...+.... ....
T Consensus 72 IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~r~l 150 (691)
T KOG2048|consen 72 IESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-KRSL 150 (691)
T ss_pred eeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-Eeec
Confidence 4578999888877765443 345555566666777888999999999999999999999988888877664333 3344
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
....+.|.+++|+|++..|+.|+.||.|++||...+........... ...+....-|+++.|-.++ .|++|..
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d------~l~k~~~~iVWSv~~Lrd~-tI~sgDS 223 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLD------RLSKREPTIVWSVLFLRDS-TIASGDS 223 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccc------ccccCCceEEEEEEEeecC-cEEEecC
Confidence 44567899999999999999999999999999988766442221111 1111123358888888776 5999999
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
.|.|.+||...+..++.+..|...|.+|+.. ++++.+++++.|+.|..|.......+.........|...+.+++..++
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 9999999999999999999999999999999 888999999999999988864222212233345568888889888865
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccc--------------------------------------------------
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSR-------------------------------------------------- 271 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------------------------------- 271 (408)
.+++|+.|..+.+-..+...........
T Consensus 303 --~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k 380 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK 380 (691)
T ss_pred --eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecC
Confidence 7888888887777554431100000000
Q ss_pred ------cccccccceeeccccc----ceeecc-----------------------------------CCCcceeeeeccc
Q 015371 272 ------LRDYDWDYRWMEYPSY----ARRLKH-----------------------------------PHDQSLATYKGHS 306 (408)
Q Consensus 272 ------~~~~~~~~~~~~~~~~----~~~~~~-----------------------------------~~~~~~~~~~~~~ 306 (408)
.....-+...++++.. ...+.. .....+..++...
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ 460 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET 460 (691)
T ss_pred CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence 0000000001111000 000000 0000000000000
Q ss_pred --------c-eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeC-CCCeEEeecCCC
Q 015371 307 --------V-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP-IYPMLISSSWDC 376 (408)
Q Consensus 307 --------~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg 376 (408)
. .......+..+..|++|+|||+.+..|.|.+|++++++.......-...|+.++++| +.+.|+.+..|+
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n 540 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN 540 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC
Confidence 0 000112234456789999999999999999999998876554434457899999995 455888899999
Q ss_pred cEEEEeeC
Q 015371 377 NIVRWEIP 384 (408)
Q Consensus 377 ~v~iw~~~ 384 (408)
.|.-||++
T Consensus 541 Qv~efdi~ 548 (691)
T KOG2048|consen 541 QVFEFDIE 548 (691)
T ss_pred eEEEEecc
Confidence 99999994
No 127
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.4e-29 Score=193.76 Aligned_cols=274 Identities=18% Similarity=0.235 Sum_probs=206.8
Q ss_pred eeEecCCc-cEEEeecCceEEEEEE---ecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 6 EVNYSGRG-RFSAADSCHVLSRYLP---VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 6 ~~~~s~dg-~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
|++-.|.. ..+++++.+....+|. ..+...+..|.+.|..+++.. ..+++++.|.+|+.|.++.. ....+.
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~til-- 145 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL-- 145 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeee--
Confidence 34444443 3455665555555554 455789999999999999987 66899999999999998763 222222
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEe
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAG 160 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 160 (408)
....+..+.-+..+..+++++. .|.|||...........+... .|.++.|+|... .|++|.
T Consensus 146 --g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D--------------ti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 146 --GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD--------------SISSVKFNPVETSILASCA 207 (433)
T ss_pred --ccccccccccccccccccccCc--eeeecccccCCccceeecCCC--------------ceeEEecCCCcchheeeec
Confidence 1224666777777778888774 599999977665444443322 599999999554 566677
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
.|+.|.+||++++.++..+. ....-+.++|+ |+...|++|++|..++.||+|. ...++....+|.+.|..++|+|
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Iswn-PeafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI-LTMRTNTICWN-PEAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred cCCceEEEecccCCccceee-eeccccceecC-ccccceeeccccccceehhhhh---hcccchhhcccceeEEEeccCC
Confidence 89999999999999888775 35567899999 5888999999999999999983 5677888899999999999999
Q ss_pred CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc
Q 015371 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (408)
.|+-|++|+.|.+|+||..+...... .+. ..-+..++++.|
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRd----------------------------------iYh-----tkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRD----------------------------------IYH-----TKRMQHVFCVKY 323 (433)
T ss_pred CcchhccccccceEEEeecCCCcchh----------------------------------hhh-----HhhhheeeEEEE
Confidence 99999999999999999988732110 010 111234566678
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 321 STAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
|-|.+|+++|+.|+.|++|.....+.
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred eccccEEEecCCCcceeeeecchhhh
Confidence 88999999999999999998765443
No 128
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=182.69 Aligned_cols=284 Identities=21% Similarity=0.276 Sum_probs=215.4
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE-----------EEecccccceeeEEEEEeC-------CCCceEEE
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI-----------QKDIETKALRWTITDTSLS-------PDQRFLVY 102 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~-------~~~~~l~~ 102 (408)
.....+.|||||..|++-+.|..+.+|++....-- ...... .....|...+|- |+..++++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeee
Confidence 44567899999999999999999999998642100 000000 112357777774 67789999
Q ss_pred eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC-CCCcceeee--
Q 015371 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL-QANKCSLRI-- 179 (408)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~-- 179 (408)
.+.+.-|++||.-+++.........+.. .-....+++|+|||.+|++|. ...|+++|+ +.|.....+
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~d---------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQD---------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHH---------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 9999999999999998755443332221 112467999999999999875 688999999 444322221
Q ss_pred -----cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec-CCe
Q 015371 180 -----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQT 253 (408)
Q Consensus 180 -----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~ 253 (408)
.+..+-+.+++|+|.+...++.|+....+-||. .....++..+.+|.+.|+.+.|.++|+.|.+|.. |..
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~----~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN----DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEe----cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 234678899999988888999999998888877 3477888899999999999999999999999887 778
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 333 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 333 (408)
|..||+|.. ..++..+..|... +.-+..| +..|++++|++|+.|
T Consensus 275 Il~WDiR~~---------------------------------~~pv~~L~rhv~~-TNQRI~F--Dld~~~~~LasG~td 318 (406)
T KOG2919|consen 275 ILCWDIRYS---------------------------------RDPVYALERHVGD-TNQRILF--DLDPKGEILASGDTD 318 (406)
T ss_pred EEEEeehhc---------------------------------cchhhhhhhhccC-ccceEEE--ecCCCCceeeccCCC
Confidence 999999983 2445555555431 1123344 345789999999999
Q ss_pred CeEEEEECCC-CceeEEEccCCCCeeeeeEeCCCCeEEeecCC
Q 015371 334 NSVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 375 (408)
Q Consensus 334 g~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (408)
|.|++||+++ ++.+..+..|+..++.++++|--++++|++..
T Consensus 319 G~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9999999998 77788888899999999999998888888643
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=2.3e-26 Score=192.82 Aligned_cols=276 Identities=13% Similarity=0.135 Sum_probs=192.9
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceE-EEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
++.+++++.|+.+++||+.+++....... + ..+.+++|+|+++.+ ++++.++.+++||..+++... .+....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~---~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV---G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC---C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC-
Confidence 35788999999999999988765554322 1 136789999999877 566778999999998775432 111111
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCC-eE
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS-LC 208 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i 208 (408)
.+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++|+ +++.++++++.++ .+
T Consensus 74 ------------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~~~ 139 (300)
T TIGR03866 74 ------------DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTNMA 139 (300)
T ss_pred ------------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCCeE
Confidence 25678999999977665 4589999999998877766653 3456889999 8899998888765 46
Q ss_pred EEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCCCcCccccccccccccccceeeccccc
Q 015371 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 287 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (408)
.+||.+ ......... .......+.|+|++++|+++ ..++.|++||+++...
T Consensus 140 ~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~----------------------- 191 (300)
T TIGR03866 140 HFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV----------------------- 191 (300)
T ss_pred EEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-----------------------
Confidence 677864 333333322 23455789999999988554 4689999999987322
Q ss_pred ceeeccCCCcceeeeecccceee-EEEEEeeccccCCCcEEEEe-eCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCC
Q 015371 288 ARRLKHPHDQSLATYKGHSVLRT-LIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
+..+..+..... .......+.++|++++++++ ..++.+.+||+++++.+..+. +...+.+++|+|+
T Consensus 192 -----------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (300)
T TIGR03866 192 -----------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD 259 (300)
T ss_pred -----------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC
Confidence 111111000000 00011233578889986553 456789999999888776654 4557999999999
Q ss_pred CCeEEee-cCCCcEEEEeeCCCCC
Q 015371 366 YPMLISS-SWDCNIVRWEIPGIGE 388 (408)
Q Consensus 366 ~~~l~s~-~~dg~v~iw~~~~~~~ 388 (408)
+++|+++ +.+|.|++||+.+++.
T Consensus 260 g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 260 EKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcE
Confidence 9998876 5689999999998654
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-27 Score=179.19 Aligned_cols=279 Identities=17% Similarity=0.175 Sum_probs=197.8
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEEEE
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVD 113 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~ 113 (408)
.+|.+-|.|+.|.+-|+++|+|+.|++|+|||.++.. .-.....-..|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4899999999999999999999999999999965442 2222233456778999999965 589999999999999998
Q ss_pred CCCCceee-eeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEEEecCCeEEEEECCCC------cceeeec----
Q 015371 114 VGSSARES-LANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQAN------KCSLRIP---- 180 (408)
Q Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~---- 180 (408)
-....... ...+..... .......|+++.|.| -|-.|++++.||.++||+.... .....++
T Consensus 90 E~~~~~~~~~~~Wv~~tt------l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTT------LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ecccccccccceeEEEEE------eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 63221111 001110000 011233799999999 4778999999999999986532 2222232
Q ss_pred ---CcCCCceEEEEecC--CCCEEEEecCC-----CeEEEEeccccccCCccceeeecccCCeEEEEecCCC----CeEE
Q 015371 181 ---AHKSDVNTVCFADE--TGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFI 246 (408)
Q Consensus 181 ---~~~~~v~~l~~~~~--~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~ 246 (408)
.+..+..|+.|+|. ...+|++|+.+ +.++||...........+..+.+|..+|+.++|.|+- .+|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 46678899999842 34678888876 4788998653333445566778999999999999963 3789
Q ss_pred EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 247 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+++.|| |+||.++..... + .. .-
T Consensus 244 vA~kDg-v~I~~v~~~~s~---------------------------------i---~~--------------------ee 266 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSA---------------------------------I---EE--------------------EE 266 (361)
T ss_pred EeecCc-EEEEEEeeccch---------------------------------h---hh--------------------hc
Confidence 999999 999998752110 0 00 00
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+.....-+. + .-+.+..+..|.+.|..+.|+-.|..|+++|.||.|++|..+
T Consensus 267 ~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 267 VLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 001111111 1 225667788999999999999999999999999999999764
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.9e-26 Score=194.52 Aligned_cols=200 Identities=20% Similarity=0.198 Sum_probs=165.0
Q ss_pred eeEEEEcCCC--CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 43 VYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 43 v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
|+++ ++|.. +.++.|+.+|.+.||++.+++.+....... ..|+++.=+|--..++.|..+|+|.++++..++.
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~---s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki- 236 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF---SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI- 236 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc---cceeEeccCCcceEEEEeccCceEEEEEcccCcE-
Confidence 6665 35543 558889999999999999998887765544 4899999999999999999999999999998876
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE-EEEecCCeEEEEECCCCcceeeec-CcCCCceEEEEecCCCCE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHL 198 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~ 198 (408)
+..++...+ +|++++|..||+.+ ++|+..|.+.+||++..+.+..+. .|.+.|....|. +....
T Consensus 237 -l~sFk~d~g------------~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl-~~epV 302 (910)
T KOG1539|consen 237 -LMSFKQDWG------------RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL-PGEPV 302 (910)
T ss_pred -EEEEEcccc------------ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec-CCCce
Confidence 334433333 69999999998754 555667999999999888777765 799999999999 88889
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec-CCCCeEEEeecCCeEEEEeCCC
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-RDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+++++.|..+++|-.+......+.++.-.+|..+..++.|. .+|..+.+++.|++++.+++..
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 99999999999987664444556777778999999999987 6788999999999999888754
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.2e-27 Score=203.10 Aligned_cols=250 Identities=17% Similarity=0.242 Sum_probs=200.9
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
.|...-+.++|.|+|++|++++.||.|++|+.......+.. +... ...|.+++. ++.+|++|+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-i~~~------------g~~v~~ia~--~s~~f~~~s~~ 75 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-IDIS------------GELVSSIAC--YSNHFLTGSEQ 75 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch-hhcc------------CceeEEEee--cccceEEeecc
Confidence 45556889999999999999999999999998665321111 1101 114666554 56689999999
Q ss_pred CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
+.|.+|.+.+++.-..+...+-++++++|+ .++++++.|+.|-.|++.++. .......+.+|.++|.++.++|++
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEcCCC
Confidence 999999999988776676678899999999 999999999999999999964 677788899999999999999999
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccce--eeEEEEEeeccc
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL--RTLIRCYFSPEY 320 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 320 (408)
++|++.+.||.|++||+.+...... +.+-... ....+.+..++|
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~t----------------------------------l~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKT----------------------------------LTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhh----------------------------------cccCCccccccccceeeeeee
Confidence 9999999999999999997433222 1111100 011244556689
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCceeEEEc--cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 321 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
+|+|..++....|+.|++|+..+.+....+. .+...+.+++|+|+|+|||+++.||.|.|||..+.
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 9998888888999999999999999888885 34455999999999999999999999999999973
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.2e-27 Score=187.32 Aligned_cols=286 Identities=14% Similarity=0.250 Sum_probs=222.6
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecCc-----eeeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEE
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-----WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQ 76 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~ 76 (408)
.++++.|.|.-..+.+.+.+...+++..... +.+.--.-+|.+.+|.|+|. .+++++....++.||+.+.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 3678999999999999999988888776543 23334467899999999998 89999999999999998874333
Q ss_pred EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
...........+.....+|++++|+..+..|.|.+....+++......+.. .|..++|+.+++.|
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---------------~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---------------VVSDFTFSSDSKEL 359 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---------------EEeeEEEecCCcEE
Confidence 222222223457788899999999999999999999988887644333332 49999999999999
Q ss_pred EEEecCCeEEEEECCCCcceeeecCcCCCc--eEEEEecCCCCEEEEecCCCeEEEEecccc--ccCCccceeeecccCC
Q 015371 157 VAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRANGVLMGHLEG 232 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~ 232 (408)
++++.+|.|++||++...++.++.. .+.| ++++.+ .++.+||+|+..|.|.|||.... ....+++..+..-...
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEee-cCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 9999999999999999988888853 3333 567777 88999999999999999996422 2345667777777889
Q ss_pred eEEEEecCCCCeEEEeec--CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 233 ITFIDSRRDGRYFISNGK--DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 233 i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
|+++.|++++++|+.++. +..+++-.+.. ...|..-.....
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-------------------------------------~TVFsNfP~~n~ 480 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPS-------------------------------------CTVFSNFPTSNT 480 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccc-------------------------------------eeeeccCCCCCC
Confidence 999999999999888876 56688877665 223333333334
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
.+..+.+++|||.+.++|.|..+|.|.+|.+.
T Consensus 481 ~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 481 KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 44556677999999999999999999999874
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=7.9e-28 Score=191.64 Aligned_cols=216 Identities=14% Similarity=0.212 Sum_probs=176.9
Q ss_pred eeeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCee----EEEecccccceeeEEEEEeCC-CCceEEEeecCc
Q 015371 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK----IQKDIETKALRWTITDTSLSP-DQRFLVYASICA 107 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 107 (408)
.+|.||+..=+.++|++.. -.|++++.|++|++||+..... +.......+|...|..++|++ +...+++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 3899999988899999954 4689999999999999976533 444456678889999999999 566778999999
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCC-cceeeecCcCCC
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSD 185 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~ 185 (408)
.+.|||+++...+...... .|..+|.|++|+| ++..||+|+.|++|.+||+++. +++..+.+|...
T Consensus 251 ~L~iwD~R~~~~~~~~~~~------------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVK------------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred eEEEEEcCCCCCCCccccc------------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 9999999864322233333 3455899999999 6678889999999999999875 467788999999
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEecccccc----------CCccceeeecccCCeEEEEecCCCC-eEEEeecCCeE
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS----------KGRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTT 254 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i 254 (408)
|.++.|+|.....|++++.|+.+.+||+..... ..+.+....||...|..+.|+|+.. .+++.+.|+.+
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 999999999999999999999999999863221 2234566778999999999999876 57788899999
Q ss_pred EEEeCCC
Q 015371 255 KLWDIRK 261 (408)
Q Consensus 255 ~iwd~~~ 261 (408)
.||.+..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999874
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.4e-27 Score=198.45 Aligned_cols=240 Identities=22% Similarity=0.300 Sum_probs=199.7
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEE-EEEcC-CCCEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS-VKFST-DGQELV 157 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~~l~ 157 (408)
...+|...|..+++.+. ..+++++.||++++|+-..++......+..+.+ -|.. +++-+ ++-+++
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g------------~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKG------------FIANSICYAESDKGRLV 75 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcc------------eeeccceeccccCcceE
Confidence 34567778888887654 478899999999999987766555444554444 2444 67765 555799
Q ss_pred EEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
+|+.|+.|.+|...+..+...+++|+..|.+++.. .++. +++||.|.++++|- .+++...+.+|...|.++.
T Consensus 76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~------~~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWR------IGELVYSLQGHTASVWAVA 147 (745)
T ss_pred eecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEec------chhhhcccCCcchheeeee
Confidence 99999999999999999999999999999999976 5555 99999999999998 5677777999999999999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
.-|++ .+++|+.|.+|++|.- ++.++++.+|.......
T Consensus 148 ~l~e~-~~vTgsaDKtIklWk~------------------------------------~~~l~tf~gHtD~VRgL----- 185 (745)
T KOG0301|consen 148 SLPEN-TYVTGSADKTIKLWKG------------------------------------GTLLKTFSGHTDCVRGL----- 185 (745)
T ss_pred ecCCC-cEEeccCcceeeeccC------------------------------------Cchhhhhccchhheeee-----
Confidence 99887 7999999999999985 35678899988444333
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
++-+ +..+++++.||.|++|++ +++.+.++.+|..-|++++..+++..++++++|++++||+...
T Consensus 186 -~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 186 -AVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred -EEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 3333 456889999999999998 8999999999999999999888888999999999999999874
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9.4e-29 Score=207.74 Aligned_cols=257 Identities=24% Similarity=0.337 Sum_probs=215.6
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
..+++....+-.+++|+.+. ...|...+.++..-..++.+++|+.|..+-+|.+..... +..+..
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~---- 68 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTG---- 68 (825)
T ss_pred ccccceeeeeeccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeec----
Confidence 34455555566677887643 223444677777766788999999999999998865443 333334
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 211 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iw 211 (408)
|..+|.++.|+++..+|++|+.+|.|++||++..+.++.+.+|...+.++.|+ |-+.+++.|+.|+.+++|
T Consensus 69 --------hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 69 --------HESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLKIW 139 (825)
T ss_pred --------cCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccceeh
Confidence 44489999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred eccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 212 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
|.| ...+...+.+|...+..+.|+|+|++++.+++|..+++||+..
T Consensus 140 D~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a------------------------------ 185 (825)
T KOG0267|consen 140 DIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA------------------------------ 185 (825)
T ss_pred hhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc------------------------------
Confidence 986 6778888999999999999999999999999999999999987
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEe
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS 371 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 371 (408)
++....|+.|.... .++.|+|..-+++.|+.|++|++||+++.+.+.........|.+++|+|++..+++
T Consensus 186 ----gk~~~ef~~~e~~v------~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 186 ----GKLSKEFKSHEGKV------QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ----cccccccccccccc------cccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 56667777776433 34468888889999999999999999999999888888889999999999998888
Q ss_pred ecCCC
Q 015371 372 SSWDC 376 (408)
Q Consensus 372 ~~~dg 376 (408)
|..+.
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 86553
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-27 Score=188.53 Aligned_cols=271 Identities=17% Similarity=0.234 Sum_probs=210.1
Q ss_pred CeEEEEe-CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 53 SFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 53 ~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
.+++++. ....+.+|.+.............+ +|.+++-+|+|.+|+.|+..|.+++|.+.++...... ..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg---~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~a---- 121 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG---PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SA---- 121 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhccccc---ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH--Hh----
Confidence 4666653 345799999877655543334444 7999999999999999989999999999999764332 22
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC---------CCcceeeecCcCCCceEEEEecC-CCCEEEE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---------ANKCSLRIPAHKSDVNTVCFADE-TGHLIFS 201 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~ 201 (408)
|..+|+++.|+.||.+|++|+.||.|.+|.+. +-++...+..|+-+|+++...+. ....+++
T Consensus 122 --------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 122 --------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred --------hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE
Confidence 34479999999999999999999999999863 34567788899999999998732 4568999
Q ss_pred ecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccccee
Q 015371 202 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 281 (408)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 281 (408)
++.|.++++||+. .+..+..+. ....+.+++.+|-+..+.+|+.+|.|.+.++.........
T Consensus 194 aS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~------------- 255 (476)
T KOG0646|consen 194 ASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG------------- 255 (476)
T ss_pred ecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc-------------
Confidence 9999999999974 566665554 4678999999999999999999999999988764321110
Q ss_pred ecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeee
Q 015371 282 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 361 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (408)
......+.....+..+.+|.... .+.+++++-||.+|++|+.||.|.|||+.+.++++++....++|+.+.
T Consensus 256 -----v~~k~~~~~~t~~~~~~Gh~~~~----~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 256 -----VNQKGRHEENTQINVLVGHENES----AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred -----ccccccccccceeeeeccccCCc----ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 00112223456677788887632 334446777899999999999999999999999999886788999999
Q ss_pred EeCCCC
Q 015371 362 WHPIYP 367 (408)
Q Consensus 362 ~~~~~~ 367 (408)
+.|-.+
T Consensus 327 i~~~~~ 332 (476)
T KOG0646|consen 327 INPLER 332 (476)
T ss_pred eecccc
Confidence 966544
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=202.26 Aligned_cols=248 Identities=20% Similarity=0.344 Sum_probs=192.2
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFI 165 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 165 (408)
...+|..+++-..++.++. ..+.+|.+................ ......+..+.|.. +.++|++++..|.|
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k-------qn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK-------QNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc-------cceeeehhhcccccchhhhheeecCCCcE
Confidence 4667788888888887763 467788776543322211111000 01112467788876 56799999999999
Q ss_pred EEEECCC---CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-C
Q 015371 166 YVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-D 241 (408)
Q Consensus 166 ~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 241 (408)
.+||+.. .+.+..+..|+..++++.|++...++|++|+.||+|++||+| ..+...++.+....|..+.|+| .
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeeccCC
Confidence 9999987 566778899999999999998899999999999999999998 5666667777889999999998 4
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
+..|+++.+.|.+++||+|.. .++...+..|.. .+++..|+
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp---------------------------------~r~~~k~~AH~G------pV~c~nwh 229 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQP---------------------------------DRCEKKLTAHNG------PVLCLNWH 229 (839)
T ss_pred CceEEEecCCceEEEeeccCc---------------------------------hhHHHHhhcccC------ceEEEeec
Confidence 678999999999999999973 356667777874 44555899
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCc--eeEEEccCCCCeeeeeEeCCCC-eEEeec--CCCcEEEEeeCCC
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGA--QVAKLDFHNAPVRDCCWHPIYP-MLISSS--WDCNIVRWEIPGI 386 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~s~~--~dg~v~iw~~~~~ 386 (408)
|++.+||+|+.|+.|+|||+.+.+ .+.++. ...+|.++.|-|..+ .|++++ .|-.|+|||+...
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 999999999999999999997654 344443 356899999999887 566665 4889999999753
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.9e-27 Score=190.97 Aligned_cols=249 Identities=19% Similarity=0.313 Sum_probs=200.9
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee-eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE-SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
.|..-|.++.++...+++.+|+ .|.|+|||+.....+ .+..+... ....-|.++.+.|||+.|++|+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl----------~rdnyiRSckL~pdgrtLivGGe 485 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL----------NRDNYIRSCKLLPDGRTLIVGGE 485 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc----------CcccceeeeEecCCCceEEeccc
Confidence 4556788899999999999987 578999999765321 11111111 11225889999999999999999
Q ss_pred CCeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 162 DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
-.++.|||+....+... +.........++.+ +|.++.+++..||.|.|||++ ....++.+.+|.+.+.||.++
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEEec
Confidence 99999999987654433 33334567788999 899999999999999999986 778889999999999999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
+||..|.+|+-|++|+.||+++....+ .|. ....+|++.
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlq-------------------------------------qhd----F~SQIfSLg 599 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQ-------------------------------------QHD----FSSQIFSLG 599 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhh-------------------------------------hhh----hhhhheecc
Confidence 999999999999999999999843222 222 113467778
Q ss_pred ccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
++|.+.+++.|-+++.+.+... ++...+.+..|+..|.++.|.+.|+++++.+.|+.+..|..+-+...
T Consensus 600 ~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred cCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 8999999999999999999986 44455667779999999999999999999999999999998877553
No 140
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=178.05 Aligned_cols=255 Identities=24% Similarity=0.358 Sum_probs=213.9
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
....+|...|..++-......+.+++.|.+.+||.++++.+ +..+.+|.+ .|.++.|++.+.++++
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--L~~Y~GH~G------------SVNsikfh~s~~L~lT 207 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--LATYTGHTG------------SVNSIKFHNSGLLLLT 207 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--eeeeccccc------------ceeeEEeccccceEEE
Confidence 35667888999999888778899999999999999999876 455555555 8999999999999999
Q ss_pred EecCCeEEEEEC------CCC----------------------------------cceeeecCcCCCceEEEEecCCCCE
Q 015371 159 AGSDNFIYVYDL------QAN----------------------------------KCSLRIPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 159 ~~~dg~i~i~d~------~~~----------------------------------~~~~~~~~~~~~v~~l~~~~~~~~~ 198 (408)
++.|++-.||.. ... .++..+.+|.+.|.+..|. ..++.
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~Q 286 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQQ 286 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcce
Confidence 999999999962 110 1344567899999999999 88999
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccc
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 278 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 278 (408)
+++++.|.+..+||+. .+..+..+.+|....+.++-+|..+++++.+.|.+.++||++..
T Consensus 287 ~vTaSWDRTAnlwDVE----tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---------------- 346 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVE----TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---------------- 346 (481)
T ss_pred eeeeeccccceeeeec----cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----------------
Confidence 9999999999999975 89999999999999999999999999999999999999999861
Q ss_pred ceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc-eeEEEccCCCCe
Q 015371 279 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPV 357 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v 357 (408)
-..+..|.+|....+ ..+|.. +..+++|+.|.+|++||+++.. ++.+++ ...++
T Consensus 347 -----------------I~sV~VFQGHtdtVT--S~vF~~-----dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~ 401 (481)
T KOG0300|consen 347 -----------------IQSVAVFQGHTDTVT--SVVFNT-----DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPA 401 (481)
T ss_pred -----------------cceeeeeccccccee--EEEEec-----CCceeecCCCceEEEeeeccccCcceeee-cCCcc
Confidence 356788999985443 334433 4568999999999999998864 566776 46789
Q ss_pred eeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCCccc
Q 015371 358 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 393 (408)
Q Consensus 358 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 393 (408)
+.++.+..++.++.--.+..|++||+++...+.+|.
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 999999988889888888999999999987777663
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.8e-24 Score=180.19 Aligned_cols=263 Identities=15% Similarity=0.153 Sum_probs=182.7
Q ss_pred eeeecccCceeEEEEcCCCCeE-EEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~ 111 (408)
..+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++....... . . .+..++|+|+++.++++ ..++.+++
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~--~-~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-G--P-DPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-C--C-CccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3444443 47789999999876 5667889999999988765543322 1 1 35678999999977655 46899999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC-eEEEEECCCCcceeeecCcCCCceEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-FIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
||+.+.+... .+... ..+.+++|+|+++.++++..++ .+.+||..+++....+.. ...+.+++
T Consensus 100 ~d~~~~~~~~--~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 163 (300)
T TIGR03866 100 IDIETRKVLA--EIPVG-------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE 163 (300)
T ss_pred EECCCCeEEe--EeeCC-------------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence 9998764322 11111 1367899999999999888765 567789988776554432 34567899
Q ss_pred EecCCCCEEE-EecCCCeEEEEeccccccCCccceeeeccc-------CCeEEEEecCCCCeEEE-eecCCeEEEEeCCC
Q 015371 191 FADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHL-------EGITFIDSRRDGRYFIS-NGKDQTTKLWDIRK 261 (408)
Q Consensus 191 ~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~ 261 (408)
|+ +++.+++ ++..++.|++||++ ..+....+..+. .....+.|+|+++++++ .+.++.+.+||+++
T Consensus 164 ~s-~dg~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 164 FT-ADGKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred EC-CCCCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 99 7787775 44569999999975 344443332211 12346889999998544 45567899999876
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCCeEEEEE
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYD 340 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~vwd 340 (408)
. +....+... ..++.++|+|+|++|+++. .+|.|.+||
T Consensus 239 ~----------------------------------~~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 239 Y----------------------------------EVLDYLLVG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred C----------------------------------cEEEEEEeC-------CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 2 222211111 1234557899999998864 589999999
Q ss_pred CCCCceeEEEccCCCCeeeeeEeC
Q 015371 341 LVSGAQVAKLDFHNAPVRDCCWHP 364 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~ 364 (408)
+.+++.+..++.. ...+.++++|
T Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 278 VAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCcEEEEEEcc-cccceeEeCC
Confidence 9999999999754 5568888875
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=8.7e-26 Score=172.80 Aligned_cols=307 Identities=18% Similarity=0.263 Sum_probs=216.5
Q ss_pred eecccCceeEEEEcC-----CCCeEEEEeCCCcEEEEEcCCCe--eEEEecccccceeeEEEEEeCCC----CceEEEee
Q 015371 36 VDGMNSRVYTSQFSN-----DGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPD----QRFLVYAS 104 (408)
Q Consensus 36 l~~h~~~v~~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~ 104 (408)
..+|+.+|..++|++ +-+.+|+.+.+ .+.+|+..... .+.+......+......++|+-+ ..++|+++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999985 33567777765 68999887654 33333333455667788888764 45889999
Q ss_pred cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeee---c
Q 015371 105 ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI---P 180 (408)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~ 180 (408)
.-|.|+|.|+.+++. ...+..| ...|..+.+.|+ .+++++++.|..|++|++++..++..+ .
T Consensus 113 ~~GvIrVid~~~~~~--~~~~~gh------------G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQC--SKNYRGH------------GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred ceeEEEEEecchhhh--ccceecc------------CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 999999999988765 2333333 337999999995 478899999999999999999998887 6
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc--------------CCc-------cc---eeeecccCCeEEE
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS--------------KGR-------AN---GVLMGHLEGITFI 236 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~-------~~---~~~~~~~~~i~~~ 236 (408)
+|...|.++.|+ .++.+|++++.|.+|++|++....- +.. .. .+-.-|...|.|+
T Consensus 179 gHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 179 GHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred cccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 799999999999 8999999999999999999862100 000 00 0122366667777
Q ss_pred EecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
.|- |+++++-+.++.|..|.............+.. .....+..+.-..-....++.
T Consensus 258 rw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e--------------------s~~Ti~~~~~~~~c~iWfirf-- 313 (385)
T KOG1034|consen 258 RWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE--------------------SATTILGEFDYPMCDIWFIRF-- 313 (385)
T ss_pred HHH--hhheeecccCceEEEEecchhhhhhhccCCCc--------------------cceeeeeEeccCccceEEEEE--
Confidence 776 68899999999999998743221110000000 001122223322222223333
Q ss_pred eccccCCCcEEEEeeCCCeEEEEECCCCcee--EEEc--cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 317 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV--AKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+|.|-++.||.|...|.|++||++..++. .++. .....|...+|+.|+.+|+...+|+.|.-||.-
T Consensus 314 --~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 --AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred --eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 34455899999999999999999887652 2222 124579999999999999999999999999864
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.1e-26 Score=173.67 Aligned_cols=233 Identities=15% Similarity=0.256 Sum_probs=182.2
Q ss_pred cceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeee-eeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEE
Q 015371 83 ALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLA-NVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAA 159 (408)
Q Consensus 83 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 159 (408)
.|.+.|+++...+ .|+++++|+.||.|.+||+++....... .+..+....-......|...|.++.|-| |...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3456899999987 7899999999999999999875422111 1122333334455678889999999999 66678888
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecC--CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
+.|.++++||..+-+....++ .++.|.+-+++|- ...++++|..+-.|++.|+. .+...+.+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEEE
Confidence 999999999999888776665 4667777777742 24578889999999999975 8899999999999999999
Q ss_pred ecCCCCe-EEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 238 SRRDGRY-FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 238 ~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
|+|...+ |++|+.||.|++||++..
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRra------------------------------------------------------ 221 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRA------------------------------------------------------ 221 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecc------------------------------------------------------
Confidence 9998774 788999999999999871
Q ss_pred eccccCCCcEEEEeeCCCeEEEEECCCCcee---EEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 317 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV---AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
.|..++.|..+++.. .+-..|.+.|..++|+.++.++++++.|..+++|+...+....
T Consensus 222 ----------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 222 ----------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ----------------cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 123444444443322 2234789999999999999999999999999999998876643
No 144
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=175.93 Aligned_cols=289 Identities=16% Similarity=0.192 Sum_probs=200.4
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
..+|++-.+|.|++||..++..+..+..... .++.+.|.. ....+.+++.||+|++||++.........+..+.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~---~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA---TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC---cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 5688888999999999999766655444444 677788866 56788899999999999999877665555544431
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEec----CCeEEEEECCCCcc-eeee-cCcCCCceEEEEecCCCCEEEEecC
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQANKC-SLRI-PAHKSDVNTVCFADETGHLIFSGSD 204 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~ 204 (408)
.+..+++....++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|.+.++|++||.
T Consensus 118 -----------~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 118 -----------TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred -----------CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc
Confidence 25777777767777877754 67899999988766 5444 6799999999999999999999999
Q ss_pred CCeEEEEeccccccCCccceeeecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
||.|.+||+........ +.....|...|..+.|..++ +.|.+-+..+...+|+++................
T Consensus 187 DGLvnlfD~~~d~EeDa-L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~------- 258 (376)
T KOG1188|consen 187 DGLVNLFDTKKDNEEDA-LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSAD------- 258 (376)
T ss_pred cceEEeeecCCCcchhh-HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhh-------
Confidence 99999999875433333 33334577889999999877 3588888899999999998664433221100000
Q ss_pred ccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEeeC-CCeEEEEECC---C---CceeEEEcc-CC
Q 015371 284 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSS-DNSVYIYDLV---S---GAQVAKLDF-HN 354 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~-dg~i~vwd~~---~---~~~~~~~~~-~~ 354 (408)
...........+. +.+| ++...+.++. -|...++-+. + .+.+..+++ |.
T Consensus 259 -----------------d~r~~~~~dY~I~-----~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ 316 (376)
T KOG1188|consen 259 -----------------DLRKEDNCDYVIN-----EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE 316 (376)
T ss_pred -----------------hHHhhhhhhheee-----cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH
Confidence 0000000011111 1111 2344444433 4444444332 2 244556665 67
Q ss_pred CCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 355 APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
.-|.++.|...+.++.|||+||.+.+|..+.
T Consensus 317 eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 317 EIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred HHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 7889999998889999999999999999644
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-27 Score=208.07 Aligned_cols=290 Identities=18% Similarity=0.289 Sum_probs=214.8
Q ss_pred EEEEcCCCC-eEEEE----------eCCCcEEEEEcCCCeeE--EEecccccceeeEEEEEeCCCCce----EEEeecCc
Q 015371 45 TSQFSNDGS-FFVAA----------SQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRF----LVYASICA 107 (408)
Q Consensus 45 ~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg 107 (408)
.++|+|++. ++|+| +.+.++-||.++..... .+...........+.++|.+.+.. |+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 468888876 56654 23456667765432111 112222223346888999987765 88889999
Q ss_pred EEEEEECCCC----ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcceeee--c
Q 015371 108 IVNIVDVGSS----ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI--P 180 (408)
Q Consensus 108 ~i~~w~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~ 180 (408)
.|.+||.... +...+... ..|.++|..+.|++.. +.|++|+.+|.|.|||+.+-+..... .
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~------------~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATK------------SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred ceEEecchhhccCcchHHHhhh------------cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC
Confidence 9999998652 12222222 3455589999999955 59999999999999999876544444 2
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC--CeEEEEecCCCC-eEEEeecCC---eE
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGR-YFISNGKDQ---TT 254 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~d~---~i 254 (408)
.....|.+++|+.....+|++++.+|.+.|||+| ..+.+..+..+.. .+..+.|+|+.. .+++++.|. .|
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 2457899999997788899999999999999998 3455555554444 467899999864 566666654 49
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC-cEEEEeeCC
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSD 333 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d 333 (408)
.+||+|.. ..+++.+.+|. +.+.++.|++.+ .++++++.|
T Consensus 235 qlWDlR~a---------------------------------ssP~k~~~~H~------~GilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 235 QLWDLRFA---------------------------------SSPLKILEGHQ------RGILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred Eeeccccc---------------------------------CCchhhhcccc------cceeeeccCCCCchhhhcccCC
Confidence 99999873 35667777887 333444555544 899999999
Q ss_pred CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCCCCC
Q 015371 334 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
+.|.+|+.++++.+..+....+.+..+.|+|... .++.++-||.|-|+.+.+....
T Consensus 276 ~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred CCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence 9999999999999999988888999999999887 7888899999999999886643
No 146
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-25 Score=174.64 Aligned_cols=301 Identities=18% Similarity=0.184 Sum_probs=217.6
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe--eE--EEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--KI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
-+.+|.+.|.++.||.++++||+|+.|..+++|+++.-- +. ...+....|...|.|++|.....++.+|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 467999999999999999999999999999999986421 11 11123445667899999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceee--ecCcCCCce
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLR--IPAHKSDVN 187 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--~~~~~~~v~ 187 (408)
+-|+++.+...+..-....+ .|..+..+|..+.|++.+.++.|.+||.+... +... .........
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~------------~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRG------------DVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred eeecccceeeeeecccCccc------------ceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 99999887644443333333 69999999988899999999999999997654 2221 122345678
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc---cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
.+.|+|....+|++.+..+-+.+||.|......-....+.+- ...-.++.|+|+|+.|++.-....-.+||+-...+
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 899998889999999999999999988322111111111111 22235778999999999887777777888766221
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeec-ccceee-EEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRT-LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
..++. |..... ..+.+-+.+|..| .-+++|+.+-.|++|.+.
T Consensus 279 -----------------------------------~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 279 -----------------------------------FVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred -----------------------------------eeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecC
Confidence 11211 111011 1112223334433 349999999999999885
Q ss_pred CC-----------------------ceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 343 SG-----------------------AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 343 ~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
.. +.+..+++|..-++.+.|+|...+|++.+-...+++|.-
T Consensus 323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 21 124567899999999999999999999999999999964
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.1e-27 Score=201.31 Aligned_cols=198 Identities=27% Similarity=0.484 Sum_probs=179.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcc
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 222 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (408)
.+.++..-..++.+++|+.|-.+-+|.+.....+..+.+|..+|.++.|+ ....+|++|+.+|+|++||+. ..+.
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----eAk~ 104 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----EAKI 104 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----hhhh
Confidence 57777776678889999999999999998888888899999999999999 888999999999999999975 8888
Q ss_pred ceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee
Q 015371 223 NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 302 (408)
Q Consensus 223 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
++++.+|...+.++.|+|-+.+++.|+.|..+++||++. ..+...+
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~~~~ 150 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCSHTY 150 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCceeee
Confidence 999999999999999999999999999999999999996 3667777
Q ss_pred ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 303 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
.+|... +-...|+|+|++++.|++|..+++||+..|+.+.+|..|.+.+..+.|+|..-++++||.|++|++||
T Consensus 151 ~s~~~v------v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 151 KSHTRV------VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred cCCcce------eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence 777633 33447999999999999999999999999999999999999999999999998999999999999999
Q ss_pred eCC
Q 015371 383 IPG 385 (408)
Q Consensus 383 ~~~ 385 (408)
+++
T Consensus 225 let 227 (825)
T KOG0267|consen 225 LET 227 (825)
T ss_pred cce
Confidence 984
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=173.01 Aligned_cols=214 Identities=17% Similarity=0.241 Sum_probs=164.9
Q ss_pred eeecccCceeEEEEcCCC--CeEEEEeCCCcEEEEEcCCC-------------eeEEEecccccceeeEEEEEeCCC-Cc
Q 015371 35 KVDGMNSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKN-------------WKIQKDIETKALRWTITDTSLSPD-QR 98 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~-~~ 98 (408)
..-+|.+.++.+.-++-+ .+.|+-+..|.|+||++... .....+....+|...=.+++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344788888888887754 56666688999999997532 112233344566667789999993 33
Q ss_pred eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcce-
Q 015371 99 FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCS- 176 (408)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~- 176 (408)
.|++|..-+.|++|...++.-..-... ...|...|..++|+|. ...|++|+.||.|+|||++.+...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~P-----------f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRP-----------FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred ccccCccccceEeeeeccCceeecCcc-----------ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence 588888888999999887653221111 1125558999999994 557899999999999999988322
Q ss_pred -eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC-CCeEEEeecCCeE
Q 015371 177 -LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTT 254 (408)
Q Consensus 177 -~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i 254 (408)
...+.|.+.|+-+.|+ ....+|++|+.||+++|||+|... .++++..++-|..+|+++.|+|. ...|++++.|.+|
T Consensus 295 ~~~~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred eeEeeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 2237899999999999 666699999999999999999754 45889999999999999999995 4578888999999
Q ss_pred EEEeCCC
Q 015371 255 KLWDIRK 261 (408)
Q Consensus 255 ~iwd~~~ 261 (408)
.+||+..
T Consensus 373 tiWDlsv 379 (440)
T KOG0302|consen 373 TIWDLSV 379 (440)
T ss_pred EEEEeec
Confidence 9999875
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=176.77 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=184.4
Q ss_pred ceeEEEEcC-------CCCeEEEEeCCCcEEEEEcCCCeeEEE------------------ecccccceeeEEEEEeCCC
Q 015371 42 RVYTSQFSN-------DGSFFVAASQESNIKVYNVDKNWKIQK------------------DIETKALRWTITDTSLSPD 96 (408)
Q Consensus 42 ~v~~~~~s~-------~~~~l~t~~~dg~i~iw~~~~~~~~~~------------------~~~~~~~~~~v~~~~~~~~ 96 (408)
.-.|++|.. .|+|+|.|+.|..|.|||++-...+.. .....+|...|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345666643 368999999999999999863211111 1123357778889999875
Q ss_pred -CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCc
Q 015371 97 -QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANK 174 (408)
Q Consensus 97 -~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 174 (408)
.+.||+|+.|.+|.+||+.+++...... .+. ..|.++.|+| ....|++|+.|++|.+.|.+...
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~------------k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSIT--HHG------------KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehh--hcC------------CceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 5678899999999999999998754433 332 3799999999 56789999999999999998533
Q ss_pred ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC-CCeEEEeecCCe
Q 015371 175 CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQT 253 (408)
Q Consensus 175 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~ 253 (408)
.....-...+.|..++|.|.....++++..||+|+-+|+| ..++++.++.+|.++|.++++++. ..++++++.|+.
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC---CCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 3332223568899999998888999999999999999998 356999999999999999999875 447889999999
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC-cEEEEeeC
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSS 332 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~ 332 (408)
|++|++...... ....|..... ...+.++.|+- -.++.|+.
T Consensus 398 Vklw~~~~~~~~-----------------------------------~v~~~~~~~~---rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 398 VKLWKFDVDSPK-----------------------------------SVKEHSFKLG---RLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred EEEEeecCCCCc-----------------------------------cccccccccc---ceeecccCCCcceEEEecCc
Confidence 999999863211 1111111011 12222333333 46778888
Q ss_pred CCeEEEEECCCCcee
Q 015371 333 DNSVYIYDLVSGAQV 347 (408)
Q Consensus 333 dg~i~vwd~~~~~~~ 347 (408)
.+.+++||+.+...+
T Consensus 440 k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 440 KAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEeecccChhH
Confidence 889999999876544
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=3.5e-24 Score=168.61 Aligned_cols=322 Identities=15% Similarity=0.191 Sum_probs=206.8
Q ss_pred cCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCC------eeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 40 NSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKN------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 40 ~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
..+|..+.|.++.. .||||+.|..|++|.++.+ ..+........|...|+++.|+|+|+.|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999876 9999999999999998653 2444445567788899999999999999999999999999
Q ss_pred ECCCCceeeeee-eee-eeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 113 DVGSSARESLAN-VTI-HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 113 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
....-....... ... ...-........|...|..++|+|++.++++++.|..+++||+..|+....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 876211100000 000 000001111123566899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccc-----------------cCCccceeeecccC----CeEEEEecCCCCeEEEee
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFI-----------------SKGRANGVLMGHLE----GITFIDSRRDGRYFISNG 249 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~ 249 (408)
|. |.++++++-+.|...+.+++.... ..+...+.+ |.. -...++|+|+|.++++..
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcccCCCCcEEEccc
Confidence 99 888899999999877777653100 000001101 111 134578899999888764
Q ss_pred c----CCeE-----EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc
Q 015371 250 K----DQTT-----KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320 (408)
Q Consensus 250 ~----d~~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (408)
. .+.+ ++++-........... ......+..........+....... ..+.
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp--------------~~~k~~lavr~~pVy~elrp~~~~~----~~~~--- 308 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLP--------------SPKKPALAVRFSPVYYELRPLSSEK----FLFV--- 308 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecC--------------CCCcceEEEEeeeeEEEeccccccc----cccc---
Confidence 2 1222 2222111000000000 0000000000000001111111000 0111
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCceeEEE-ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 321 STAQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
-|.+-.+|.++.+ .|++||.++.+++... .-|-..|++++|++||..|+..|.||...+-.++..
T Consensus 309 lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 309 LPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred cccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1234456666655 6999999998887766 457889999999999999999999998887666543
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=164.58 Aligned_cols=298 Identities=15% Similarity=0.153 Sum_probs=203.3
Q ss_pred EecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 29 PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 29 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
|+.+.+.|++|.+.|+++.|..+++ |.+|..-|.|.+|++.+......... .+...|+.+.-.|+ ..|.+-+.|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCCce
Confidence 5566788999999999999998875 88999999999999998754433221 23447888988888 56888889999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-----CCC----EEEEEecC-CeEEEEECCCCcceee
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-----DGQ----ELVAAGSD-NFIYVYDLQANKCSLR 178 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~----~l~~~~~d-g~i~i~d~~~~~~~~~ 178 (408)
+.+|++.......+..+. ++++.|.+ +++ .++.-+.. ..+.+-|......+..
T Consensus 79 L~lw~ia~s~~i~i~Si~-----------------~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i 141 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIV-----------------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI 141 (323)
T ss_pred EEEEEccCcceEEEeeee-----------------ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence 999999876654444432 33333332 111 11111111 0122223222221211
Q ss_pred e----cCcCCCceEEEEecCCC--CEEEEecCCCeEEEEecccc------ccCCccceeeecccCCeEEEEecCCCCeEE
Q 015371 179 I----PAHKSDVNTVCFADETG--HLIFSGSDDSLCKVWDRRCF------ISKGRANGVLMGHLEGITFIDSRRDGRYFI 246 (408)
Q Consensus 179 ~----~~~~~~v~~l~~~~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 246 (408)
. .+..+.+.|..+....+ -++++|.++|.+.+||+... ....+.......|..++.++.+.+.-..=+
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence 1 12345666666542223 36788999999999997521 011134444567999999999988766677
Q ss_pred EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 247 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+|+.+..+..|+++........ .....++. ..+....+-||++.
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lkn--------pGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKN--------PGVSGVRIRPDGKI 265 (323)
T ss_pred CCCccccceeeeeccccCcccc----------------------------cceEEecC--------CCccceEEccCCcE
Confidence 8888888999988763211110 00011111 11122245678999
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+|+++.|+.||||+.++.+++..++.|++.|++++|+|+.+++|++|.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999986
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=1e-24 Score=176.13 Aligned_cols=287 Identities=14% Similarity=0.156 Sum_probs=205.5
Q ss_pred ecCceEEEEEEecCceeeeccc--CceeEEEEcCCCCeEEEE--eCCCcEEEEEcCCCee-EEEecccccceeeEEEEEe
Q 015371 19 DSCHVLSRYLPVNGPWKVDGMN--SRVYTSQFSNDGSFFVAA--SQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSL 93 (408)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~h~--~~v~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~ 93 (408)
+....++++......-.+..|+ ..+.++.|+.... |+++ +.|..|++|.-..... +.......+. .-.|++.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh
Confidence 3334445554444333333332 3489999987654 4444 5688899998544311 1111111111 2344444
Q ss_pred CCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 015371 94 SPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN 173 (408)
Q Consensus 94 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 173 (408)
.....++++|+..+.|+|||+..... ...++. |...|+++.++....+|++++..|.|.|..+.++
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~--hr~lkd------------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLI--HRFLKD------------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHH--hhhccC------------CcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 45568999999999999999974332 333333 3447999999999999999999999999999999
Q ss_pred cceeeecCc-CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC-CCeEEEeecC
Q 015371 174 KCSLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKD 251 (408)
Q Consensus 174 ~~~~~~~~~-~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 251 (408)
.....+... ...|.-+.|+|....+|.+++.+|.|.+||+. ...........|..+...|+|+|. ..+|++.+.|
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~---g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ---GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc---CCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 877777644 34566899997777788899999999999974 334445556789999999999995 4578899999
Q ss_pred CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee
Q 015371 252 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 331 (408)
..|.+||++... ....+... .....++|+++|.+|++|+
T Consensus 231 kki~~yD~~s~~----------------------------------s~~~l~y~-------~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 231 KKINIYDIRSQA----------------------------------STDRLTYS-------HPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ceEEEeeccccc----------------------------------ccceeeec-------CCcceeeecCCceEEEeec
Confidence 999999998622 11111111 1233457999999999999
Q ss_pred CCCeEEEEECCCC-ceeEEEccCCCCeeeeeEeCCC
Q 015371 332 SDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIY 366 (408)
Q Consensus 332 ~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~ 366 (408)
..|.|..||++.. .++..+..|...|++++|-|..
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999864 5788889999999999998764
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-24 Score=170.60 Aligned_cols=298 Identities=15% Similarity=0.159 Sum_probs=203.7
Q ss_pred eEEEEcCCCCeEEEEeCC---Cc--EEEEEcCCC-eeEEEecccccceeeEEEEEeCC-------CCceEEEeecCcEEE
Q 015371 44 YTSQFSNDGSFFVAASQE---SN--IKVYNVDKN-WKIQKDIETKALRWTITDTSLSP-------DQRFLVYASICAIVN 110 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d---g~--i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~ 110 (408)
-.+..-|..++++++-.+ .. ++||+-... .-++.-.... ....|++|.. .|+++|.|+.+..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilp---afPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILP---AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceecc---CcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 345666766777766433 22 555553321 1111111111 1345666642 368999999999999
Q ss_pred EEECCCCcee-eeeeeeeee------eeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeeecCc
Q 015371 111 IVDVGSSARE-SLANVTIHK------GLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAH 182 (408)
Q Consensus 111 ~w~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 182 (408)
|||+.-.... +...+.... ...-.....+|...|.++.|+.. .+.|++|+.|.+|.+||+.++++...+..|
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 9998632211 011110000 00011223467778889999874 457899999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCC
Q 015371 183 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 261 (408)
...|.++.|+|..+.+|++|+.|+++.+.|.|.....+ ..-.-.+.|-.++|.|... .++++..||+|+-+|+|.
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccC----ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 99999999999999999999999999999998421111 1222457899999998654 677888899999999998
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
. ++++.+++.|......+.. +.. ...++++++.|+.|++|++
T Consensus 362 ~---------------------------------~~~vwt~~AHd~~ISgl~~--n~~---~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 362 P---------------------------------GKPVWTLKAHDDEISGLSV--NIQ---TPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred C---------------------------------CCceeEEEeccCCcceEEe--cCC---CCcceeeccccceEEEEee
Confidence 3 4778888889865554422 111 2468999999999999998
Q ss_pred CCCce--eEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCC
Q 015371 342 VSGAQ--VAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 342 ~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~ 386 (408)
..-.. +..-...-+...|.++.|+-. .|+.|+..+.++|||+...
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 65433 222111223466777788766 6778888889999999774
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=8.4e-25 Score=170.46 Aligned_cols=240 Identities=13% Similarity=0.207 Sum_probs=175.7
Q ss_pred eeEecCCccEEE---------eecCceEEEEEEecCceeeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeE
Q 015371 6 EVNYSGRGRFSA---------ADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI 75 (408)
Q Consensus 6 ~~~~s~dg~~~~---------~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~ 75 (408)
|..||..|+.-. ..............+.+++.+|.+.=+.++|||- ...|++|..-+.|++|...++.-.
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~ 247 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK 247 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCcee
Confidence 556677776422 1222222233344556789999999999999993 234788877889999999887544
Q ss_pred EEecccccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 76 QKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
.......+|...|..++|||. ...|++|+.||+|+|||++.+..+.....+.| ...|+.|.|+.+-.
T Consensus 248 vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh------------~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 248 VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH------------NSDVNVISWNRREP 315 (440)
T ss_pred ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc------------CCceeeEEccCCcc
Confidence 444556678889999999994 56889999999999999998754433333443 33799999999888
Q ss_pred EEEEEecCCeEEEEECCC---CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc---------CC--
Q 015371 155 ELVAAGSDNFIYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS---------KG-- 220 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~-- 220 (408)
+|++|+.||++.|||++. ++++..++-|..+|+++.|+|.+...|++++.|..|.+||+..... .+
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~ 395 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ 395 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh
Confidence 999999999999999965 5677889999999999999998999999999999999999852111 00
Q ss_pred -ccceeeecc--cCCeEEEEecCCC-CeEEEeecCCeEEEEe
Q 015371 221 -RANGVLMGH--LEGITFIDSRRDG-RYFISNGKDQTTKLWD 258 (408)
Q Consensus 221 -~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd 258 (408)
.+.+.+.-| ...+..+.|++.- .++++.+.|| +.||.
T Consensus 396 dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 396 DLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 011112223 2346778888753 4778888887 45543
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=160.11 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=199.5
Q ss_pred ceeeEecCCccEEEee---cCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAAD---SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~---~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..|+.||+.|.++|.+ |...++.+........+.+|..+|++++||+||+.|+|++.|..|.+||+..+..++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 5689999999999975 455567776677778899999999999999999999999999999999999987665543
Q ss_pred cccceeeEEEEEeCCCCceEEE-eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVY-ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
... +|..+.|+|-....+. .-.+..-.+-++.......+.. .. .++. .....+..|.+.|+++++|
T Consensus 105 f~s---pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-d~--------d~dl-n~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 105 FDS---PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-DD--------DGDL-NSSASHGVFDRRGKYIITG 171 (405)
T ss_pred ccC---ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-CC--------cccc-ccccccccccCCCCEEEEe
Confidence 333 7999999995443333 3334344455554432211111 00 0000 1123344688999999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcC-CCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCc-----cceeeec--ccC
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-----ANGVLMG--HLE 231 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~--~~~ 231 (408)
...|.+.++|.++.+++..++-.. ..|..+.++ ..+..|+.-+.|+.||.|+++.....++ +.+.+.. ...
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 999999999999999998887655 789999998 8999999999999999999763222211 1111111 122
Q ss_pred CeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 232 GITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 232 ~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
.-.+++|+.+|.+++.++. -..++||.-.. +..++.+.+.....
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~----------------------------------GsLVKILhG~kgE~- 295 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSI----------------------------------GSLVKILHGTKGEE- 295 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCC----------------------------------cceeeeecCCchhh-
Confidence 3457889999999888775 34599999777 45566666554321
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
.. .+.|+|-...+++- ..|.|++|.....
T Consensus 296 l~----DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 296 LL----DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ee----ecccccceeeeeec-cCCceEEEEeecc
Confidence 11 22444445556655 7789999987543
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-25 Score=198.49 Aligned_cols=251 Identities=16% Similarity=0.260 Sum_probs=193.9
Q ss_pred cCceeEEEEcCCCCe----EEEEeCCCcEEEEEcCC---CeeEEEecccccceeeEEEEEeCCCCc-eEEEeecCcEEEE
Q 015371 40 NSRVYTSQFSNDGSF----FVAASQESNIKVYNVDK---NWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNI 111 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~----l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~ 111 (408)
..+-+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++... .||+|+.+|.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 466889999997765 88899999999999876 344444455677888999999999655 9999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeeecCcCC--CceE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKS--DVNT 188 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~ 188 (408)
||+.+.+...... .......|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.+ .+..
T Consensus 144 WDlnn~~tP~~~~------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred eccCCcCCCCCCC------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 9998754322211 0112236999999884 45677888889999999999988877765544 5788
Q ss_pred EEEecCCCCEEEEecCCC---eEEEEeccccccCCccceeeecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcC
Q 015371 189 VCFADETGHLIFSGSDDS---LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
++|+|.+...+++++.|. .|.+||+|. ...+.+.+.+|...|.++.|.+.+ .++++++.|+.|.+|+.++
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~---assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--- 285 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRF---ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--- 285 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccc---cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC---
Confidence 999987788888888765 599999983 566777789999999999999966 8999999999999999988
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC-CcEEEEeeCCCeEEEEECCC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~vwd~~~ 343 (408)
++.+..+.... ..+|...|.|. ...|++++-||.|.||.+..
T Consensus 286 -------------------------------gEvl~~~p~~~------nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 286 -------------------------------GEVLGELPAQG------NWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred -------------------------------ceEeeecCCCC------cceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 34444444433 23344445543 45899999999999999976
Q ss_pred Cc
Q 015371 344 GA 345 (408)
Q Consensus 344 ~~ 345 (408)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 53
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=3.2e-24 Score=161.54 Aligned_cols=286 Identities=17% Similarity=0.236 Sum_probs=201.5
Q ss_pred eeeecccCceeEEEEcC-CCCeEEEEeCC-------CcEEEEEcCCCeeEEE------ecc-cccceeeEEEEEeCCCCc
Q 015371 34 WKVDGMNSRVYTSQFSN-DGSFFVAASQE-------SNIKVYNVDKNWKIQK------DIE-TKALRWTITDTSLSPDQR 98 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~-~~~~l~t~~~d-------g~i~iw~~~~~~~~~~------~~~-~~~~~~~v~~~~~~~~~~ 98 (408)
..|..|.+.|+.++-+| |.+.|+|+..+ -.+.||.+........ ... ...+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35678899999999999 45667776442 2478999876432211 111 113345899999999999
Q ss_pred eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEEEecCCeEEEEECCCCcce
Q 015371 99 FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCS 176 (408)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 176 (408)
.|++-. |..|.+|++...... ...+.... ..++....++-+|+| +++.+++.+ |+++..||+++.++.
T Consensus 137 klasm~-dn~i~l~~l~ess~~-vaev~ss~-------s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKI-VAEVLSSE-------SAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred eeEEec-cCceEEEEcccCcch-heeecccc-------cccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 998776 788999999876542 11111111 112344678889998 787777764 899999999998877
Q ss_pred eee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC-CCeEEEeecCCeE
Q 015371 177 LRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTT 254 (408)
Q Consensus 177 ~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i 254 (408)
..+ .+|...|..+.|+|....+|++++.||.|++||.| ....++..+.+|...+.++.|+|. .+++++++.|..|
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 776 56889999999997778899999999999999998 467888999999999999999995 5678899999999
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 334 (408)
.+|........+..... ........+.. .-
T Consensus 284 ~Lsca~svSSE~qi~~~-------------------------~dese~e~~ds-------------------------ee 313 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFE-------------------------DDESESEDEDS-------------------------EE 313 (370)
T ss_pred EEEeccccccccccccc-------------------------cccccCcchhh-------------------------HH
Confidence 99987763322211000 00000000000 00
Q ss_pred eEEEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCC
Q 015371 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 385 (408)
.++ -+. ...+.++..|...|++++||.-.+ .+|+-+.||.+.|=+++.
T Consensus 314 r~k--pL~-dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVK--PLQ-DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcc--ccc-ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111 111 124567778999999999998777 677789999999876653
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=179.84 Aligned_cols=261 Identities=21% Similarity=0.282 Sum_probs=184.1
Q ss_pred EEEEeCC---CCceEEEeecCcEEEEEECCCCcee----eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 89 TDTSLSP---DQRFLVYASICAIVNIVDVGSSARE----SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 89 ~~~~~~~---~~~~l~~~~~dg~i~~w~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
.+..|++ ....|+.+.++|.|.++|....... ....+. .|...|.++.|.|....|++++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~------------aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL------------AHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccc------------cccceeEeeccCCCceeEEEccC
Confidence 3456655 3567889999999999998765432 112222 34458999999997778999999
Q ss_pred CCeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc---------------------
Q 015371 162 DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS--------------------- 218 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------- 218 (408)
|.++++||+++.++... +.+|.+.|.+++|.|.+...|++|+.||.|.|||+|....
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999988877 8899999999999998999999999999999999984210
Q ss_pred --CCccceeeecccCCeEE---EEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 219 --KGRANGVLMGHLEGITF---IDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 219 --~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
..+.+....++...|.+ +.+..|...|++++. |+.|++||+++.........
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep---------------------- 258 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP---------------------- 258 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC----------------------
Confidence 01112223345555655 556678889999888 99999999998654433211
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc--eeEEEccCCCC--eeeeeEeCCCCe
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--QVAKLDFHNAP--VRDCCWHPIYPM 368 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~ 368 (408)
.....+..+. .. ...+.++.....|.+|++.+.|+.|++|++.+.. ++..+.++... -..-..+|++.+
T Consensus 259 ----~~~~~~~t~s--kr-s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 259 ----RGSDKYPTHS--KR-SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ----CcccCccCcc--cc-eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 1111111111 00 1112223344458888888889999999997653 44455444221 112356899999
Q ss_pred EEeecCCCcEEEEeeCCCCCCC
Q 015371 369 LISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 369 l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
|++|+.|...++|.+...+..+
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EeccCCCcceeeeeecCccCCh
Confidence 9999999999999999876654
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8.1e-24 Score=185.72 Aligned_cols=307 Identities=21% Similarity=0.226 Sum_probs=218.5
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEEEECC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~ 115 (408)
+....-..+.|+|-...++++...-.|+|||.+.++.+..+.........|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3344566788999888899998777899999999877776665555566899999865 56789999999999999754
Q ss_pred CCc---eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC-cCCCceEEEE
Q 015371 116 SSA---RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTVCF 191 (408)
Q Consensus 116 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~ 191 (408)
... .+.+..+..-.+. ..+.... =.-+.|.....+|++++.-..|+|||.........+.. ....|+++.-
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~---~~~~r~~--~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQ---LPGARGT--GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred ccccCCceeEEeecccccc---CccCCCC--CeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 332 2222222221111 1111111 14467877666777777788999999998887777643 4556788877
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCC--eEEEEecCCCCe-EEEeecCCeEEEEeCCCCcCcccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG--ITFIDSRRDGRY-FISNGKDQTTKLWDIRKMSSNTTD 268 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~ 268 (408)
+-..++++++|..||.|++||.|... ....+...+.|+.. |..+.+.+.|-- |++|+.||.|++||++.......
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~- 1294 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF- 1294 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc-
Confidence 65678999999999999999998532 23567778888887 999999886654 99999999999999998321111
Q ss_pred ccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
.....|.... ....++..+++...+|+|+. +.|+||++ .|+.+.
T Consensus 1295 -------------------------------~~iv~~~~yG---s~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~ 1338 (1387)
T KOG1517|consen 1295 -------------------------------LTIVAHWEYG---SALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLN 1338 (1387)
T ss_pred -------------------------------ceeeeccccC---ccceeeeeccCCCeeeecCc-ceEEEEec-Chhhhc
Confidence 1111111000 01223355667889999998 89999998 455554
Q ss_pred EEccC-------CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 349 KLDFH-------NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 349 ~~~~~-------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.++.+ .+.+.+++|+|..-+||+|+.|.+|.||......
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 44322 4578999999998899999999999999887644
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=160.80 Aligned_cols=278 Identities=18% Similarity=0.160 Sum_probs=192.4
Q ss_pred EEEEEcCCCeeEEE--ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCc
Q 015371 64 IKVYNVDKNWKIQK--DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDE 141 (408)
Q Consensus 64 i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (408)
..-|+.+.....+. .....+|...|++++|+.||++|++++.|+.|++|++.....+.-..+.. ... .
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~------nve----~ 132 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ------NVE----Y 132 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc------ccc----C
Confidence 44555544332222 22457888899999999999999999999999999998754322211111 110 1
Q ss_pred cceEEEEEcCCCCEEEEEec-CCeEEEEECCCC---cceee--------e-cCcCCCceEEEEecCCCCEEEEecCCCeE
Q 015371 142 FGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN---KCSLR--------I-PAHKSDVNTVCFADETGHLIFSGSDDSLC 208 (408)
Q Consensus 142 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~--------~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 208 (408)
...+.+.|.||-+-+++... ...+++|.+... ..... + +.|.-.+..+-.. .++.+|++++.|..|
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i 211 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKI 211 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcE
Confidence 13778999999876665544 568999977432 21111 1 2356667777776 788999999999999
Q ss_pred EEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccc
Q 015371 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 288 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (408)
.+|++ .++.+..+......-+..+.+|+|+++++++..-.|++|.+--...-...
T Consensus 212 ~lw~l-----kGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 212 CLWDL-----KGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ-------------------- 266 (420)
T ss_pred EEEec-----CCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchh--------------------
Confidence 99997 47777777777777788899999999999999888999986432111000
Q ss_pred eeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC-------CceeEEEc----cCCCCe
Q 015371 289 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS-------GAQVAKLD----FHNAPV 357 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~----~~~~~v 357 (408)
.-..+..+++|.. .+...+||++...+++.+.||.+++||+.- .+.+.+.. ...+.-
T Consensus 267 ------ev~rvf~LkGH~s------aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 267 ------EVKRVFSLKGHQS------AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred ------hhhhhheeccchh------heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCc
Confidence 1234567788884 445558999999999999999999999852 12222221 112233
Q ss_pred eeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 358 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 358 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
..++.+|+|+.|+.+. ...++++..+.++..+
T Consensus 335 ~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 335 VRLELSPSGDSLAVSF-GSDLKVFASEDGKDYP 366 (420)
T ss_pred eEEEeCCCCcEEEeec-CCceEEEEcccCccch
Confidence 3799999999887654 4579999888766543
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=180.63 Aligned_cols=269 Identities=15% Similarity=0.199 Sum_probs=201.4
Q ss_pred eeeEecCCccE--EEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 5 REVNYSGRGRF--SAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 5 ~~~~~s~dg~~--~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
..++|-|||.- ++++....+.........+.|+||.+.|+|++|+.||+++|+|+.|..|.+|+-.-... ...
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-----LkY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-----LKY 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-----eee
Confidence 35899999974 34455544445445556689999999999999999999999999999999998543222 223
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
.|...|.||.|+|-...|++++-+ ..-+|..+......... ...+.+.+|..||++++.|-.+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks----------------s~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS----------------SSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhh----------------heeEEEeeecCCCcEEEEeccC
Confidence 566689999999999999988754 46688776544321111 1158899999999999999999
Q ss_pred CeEEEEECCCCcceeeec---CcCCCceEEEEecCC----CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 163 NFIYVYDLQANKCSLRIP---AHKSDVNTVCFADET----GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
|+|.+-+- +++....+. +...+|.+++|+|.. ...+++.....++.++.+ .++.+..-..-.-...|
T Consensus 154 GTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~C 227 (1081)
T KOG1538|consen 154 GTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCC 227 (1081)
T ss_pred ceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchh
Confidence 99999875 444444443 467899999999543 357888888888888886 44444433334445678
Q ss_pred EEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEE
Q 015371 236 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 315 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
+.+.++|.+++.|+.|+.+.+|--.. -.+.+... .-..+
T Consensus 228 isYf~NGEy~LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~WI 266 (1081)
T KOG1538|consen 228 ISYFTNGEYILLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSWI 266 (1081)
T ss_pred heeccCCcEEEEccCCCceEEEeecC-----------------------------------eEEeeccc------cceeE
Confidence 99999999999999999999996443 22222222 22578
Q ss_pred eeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 316 FSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 316 ~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
|.++..|++++++.|+.||+|-.|++.
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeehhhhH
Confidence 888999999999999999999999874
No 162
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-24 Score=175.18 Aligned_cols=322 Identities=18% Similarity=0.266 Sum_probs=238.3
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~ 111 (408)
..|.+|.+.|..+.|+..|..|++|+.|..|.+||+..+...... ..+|...|....|.| +...|++++.||.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceee
Confidence 468899999999999999999999999999999999887554433 446666788888988 4578999999999998
Q ss_pred EECCCC-ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcceeee---cCcCC--
Q 015371 112 VDVGSS-ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI---PAHKS-- 184 (408)
Q Consensus 112 w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~-- 184 (408)
=.+... .......+..|.+ +|.-++.-|+. ..|.+++.|+.+.-+|++.+.+...+ ..+..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g------------~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEG------------PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred eeeccccceecceecccccC------------ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 776433 3332334444444 79999998854 46889999999999999887654444 22333
Q ss_pred -CceEEEEecCCCCEEEEecCCCeEEEEeccccccC--Cccceeee------cccCCeEEEEecCCCCeEEEeecCCeEE
Q 015371 185 -DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK--GRANGVLM------GHLEGITFIDSRRDGRYFISNGKDQTTK 255 (408)
Q Consensus 185 -~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 255 (408)
...+++..|.+.+.+++|+.|..+++||.|..... ...+..+. .....|+++.++.++.-|+++..|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 56788999888889999999999999998743222 11122222 2345699999998877777777888899
Q ss_pred EEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCe
Q 015371 256 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 335 (408)
Q Consensus 256 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 335 (408)
++.-........... ..........+++|....++..+-| |.|...|+++|+.-|.
T Consensus 362 LF~~~~~~G~~p~~~---------------------s~~~~~~k~vYKGHrN~~TVKgVNF---fGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPS---------------------SPREQYVKRVYKGHRNSRTVKGVNF---FGPRSEYVVSGSDCGH 417 (559)
T ss_pred EeccccccCCCCCCC---------------------cchhhccchhhcccccccccceeee---ccCccceEEecCccce
Confidence 994433221110000 0000112234888887777544432 6677899999999999
Q ss_pred EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCCccc
Q 015371 336 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 393 (408)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 393 (408)
|.||+-.+++.+..+.+-..-|+||.=+|.-..||++|-|..|+||...+.+....+.
T Consensus 418 IFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~ 475 (559)
T KOG1334|consen 418 IFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPT 475 (559)
T ss_pred EEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChh
Confidence 9999999999999998877799999999999999999999999999886655554443
No 163
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=170.68 Aligned_cols=225 Identities=15% Similarity=0.248 Sum_probs=159.1
Q ss_pred cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeecCcE
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAI 108 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 108 (408)
.....|.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+.++. ...+|...|.++.|-| +.+.+++|+.|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 33467999999999999999999999999999999999876555443 3457788999999999 5678899999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCccee----------
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSL---------- 177 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~---------- 177 (408)
|+++|+...+.... .+...........|...|..++..|++ ..+.+++.||+|+-+|++......
T Consensus 119 i~lfdl~~~~~~~~----d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM----DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred EEEEeccccccccc----ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 99999985332111 011111111122344578889999988 788999999999999997632111
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC----C----------ccceee-eccc-----------C
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK----G----------RANGVL-MGHL-----------E 231 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~----------~~~~~~-~~~~-----------~ 231 (408)
.+...--...|+..+|.+..+|++|+.|-..++||.|..... + .++..+ .+|. .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 111122346789999999999999999999999995521110 0 011111 1121 1
Q ss_pred CeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 232 GITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 232 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.++-+.|+|+|.-|++.-....|+++|+..
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 246678999998776665566799998865
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2e-23 Score=168.75 Aligned_cols=275 Identities=15% Similarity=0.189 Sum_probs=196.2
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe--ecCcEEEEEECCCC--ceeeeeeeeeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNIVDVGSS--ARESLANVTIHK 129 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~w~~~~~--~~~~~~~~~~~~ 129 (408)
+.+..+.| .+++||....+........... -.+.+++|+.... |+++ +.|..+++|.-... +..........
T Consensus 5 l~~aS~gd-~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 5 LHVASTGD-KTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD- 80 (673)
T ss_pred eeeeccCC-ceEEeecccccCccccccCCCC-Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc-
Confidence 33433334 6999998876544443332222 2499999987664 4444 45778889876543 11111111111
Q ss_pred eeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEE
Q 015371 130 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 209 (408)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 209 (408)
.-.|++......++++|+..+.|+|||++...+.+.++.|...|+++.++ ....+|++++..|.|.
T Consensus 81 -------------~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 81 -------------NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDII 146 (673)
T ss_pred -------------hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEE
Confidence 23444444455899999999999999999877778889999999999999 8889999999999999
Q ss_pred EEeccccccCCccceeeecc-cCCeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeeccccc
Q 015371 210 VWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 287 (408)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (408)
|..+. .+.....+... ...+.-+.++|..+ +|.+++.+|.|.+||+.....
T Consensus 147 ih~~~----t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----------------------- 199 (673)
T KOG4378|consen 147 IHGTK----TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----------------------- 199 (673)
T ss_pred EEecc----cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----------------------
Confidence 99964 44444445443 34456889999777 466788999999999987331
Q ss_pred ceeeccCCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCC
Q 015371 288 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY 366 (408)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (408)
.....+.|... +..++|+| +..+|++.+.|..|.+||....+....+. -..+.+.++|+++|
T Consensus 200 ----------~~~~~~~HsAP------~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 200 ----------IFHASEAHSAP------CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECG 262 (673)
T ss_pred ----------ccchhhhccCC------cCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCc
Confidence 12223344422 22234555 45688899999999999998777766665 46689999999999
Q ss_pred CeEEeecCCCcEEEEeeCCCCCCC
Q 015371 367 PMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 367 ~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
.+|+.|...|.|..||++..+.+.
T Consensus 263 ~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred eEEEeecCCceEEEEecccCCCCc
Confidence 999999999999999999876653
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=159.39 Aligned_cols=346 Identities=14% Similarity=0.149 Sum_probs=213.1
Q ss_pred eEecCCccEEEeecCceE-EEEEEecCceeeecccCceeEEEEcCCCCeEEEE-eCCCcEEEEEcCCCeeEEEecccccc
Q 015371 7 VNYSGRGRFSAADSCHVL-SRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~-~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
..|||+|+++++.....+ .+....-+...+-..-+.|.-+.|+.|..+++++ ..|+.|.+|++...+-..++....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~-- 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ-- 91 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC--
Confidence 579999999998765522 2211111111122234778899999998776665 678899999998765444443333
Q ss_pred eeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC
Q 015371 85 RWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 163 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (408)
.++.+++|||||+.|+ +...+-.|.+|.+.+.....+...+. .+..++|+|||++.+.++.-.
T Consensus 92 -agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~---------------~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 92 -AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---------------NVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred -CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc---------------CceeEEECCCCceeeeeeccc
Confidence 3799999999996555 66678899999998877644433222 478899999999988887632
Q ss_pred ---eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-cccCCeEEEEec
Q 015371 164 ---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSR 239 (408)
Q Consensus 164 ---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 239 (408)
.+.+.....-..+..+...+-..+.+.|+ |+++.|+ +||. .-....+. .-.-++..++|+
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~la---------Vwd~------~Leykv~aYe~~lG~k~v~ws 219 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWLA---------VWDN------VLEYKVYAYERGLGLKFVEWS 219 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEEE---------Eecc------hhhheeeeeeeccceeEEEec
Confidence 22222223334455566667788999999 8877654 5762 11111111 123578899999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCcccc---------------ccccccccccceeecccccceeecc-----------
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTD---------------NSRLRDYDWDYRWMEYPSYARRLKH----------- 293 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----------- 293 (408)
|.+++|++|+.|+.+++.+--+.+.-... .+...........+.+.+.......
T Consensus 220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 99999999999999998664331111100 0000000111111111111000000
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC--CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEe
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD--NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS 371 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 371 (408)
.....+..++...........+-.++||+|..|+++-.+. +.+.+||++..+....+. ...+|....|+|....|+.
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEE
Confidence 0000111111111111111233345799999999987654 679999998877655553 4678999999999998888
Q ss_pred ecCCCcEEEEeeCCCC
Q 015371 372 SSWDCNIVRWEIPGIG 387 (408)
Q Consensus 372 ~~~dg~v~iw~~~~~~ 387 (408)
+.....+++|......
T Consensus 379 ctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 379 CTGKSRLYFWAPSGPR 394 (447)
T ss_pred EcCCceEEEEcCCCce
Confidence 8777889999887643
No 166
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-22 Score=150.98 Aligned_cols=255 Identities=15% Similarity=0.255 Sum_probs=184.7
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ce----eeecccCceeEEEEcC--CCCeEEEEeCCCcEEEEEcCCC--
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PW----KVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKN-- 72 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~----~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~-- 72 (408)
..++.|.+-|+..++++.+....++.... .+ ..+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 46889999999999988888777777322 22 4568999999999976 4899999999999999985321
Q ss_pred ----eeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeee-cCCCCCccceE
Q 015371 73 ----WKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFS-ADGDEDEFGIF 145 (408)
Q Consensus 73 ----~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 145 (408)
..-............|++++|.| -|-.||+++.||.+|||+.-.... +..+.....+... .....+..+..
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n--Ls~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN--LSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc--cccchhhhhhhhccCCcccccCcce
Confidence 11112222334455899999999 477899999999999998754322 2222222221111 11223445788
Q ss_pred EEEEcC---CCCEEEEEecC-----CeEEEEECCCCc----ceeeecCcCCCceEEEEecCCC---CEEEEecCCCeEEE
Q 015371 146 SVKFST---DGQELVAAGSD-----NFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETG---HLIFSGSDDSLCKV 210 (408)
Q Consensus 146 ~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~---~~l~~~~~dg~i~i 210 (408)
|+.|+| ...+|++|+.+ +.++||....+. .+.++.+|+.+|++++|.|.-+ .+|++++.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 999997 35678888765 478898765442 3456778999999999996444 5899999999 999
Q ss_pred Eeccccc----------------cCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 211 WDRRCFI----------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 211 wd~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
|.++... -.-+.+..+.+|.+.|..+.|+-.|..|.+.+.||.|++|...-
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9986210 01123445678999999999999999999999999999997653
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=170.59 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=207.5
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceee
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (408)
.|..++|-|||..|+.+..+ .+.+||.+.+..++ ...+|...|.+++|+.||+.+++|+.|..|.+|.-.-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-- 87 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEecccccce--
Confidence 79999999999998888655 69999999986665 4567778999999999999999999999999998654332
Q ss_pred eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEE
Q 015371 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS 201 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~ 201 (408)
... .|.+.|.|+.|+|-...|++++-+ ..-+|...... +.+.+ ....+.+.+|. .+|++++.
T Consensus 88 -LkY-------------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWt-nDGqylal 149 (1081)
T KOG1538|consen 88 -LKY-------------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWT-NDGQYLAL 149 (1081)
T ss_pred -eee-------------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeec-CCCcEEEE
Confidence 222 133469999999999999988753 45678765443 22222 34678899999 99999999
Q ss_pred ecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC-----eEEEeecCCeEEEEeCCCCcCcccccccccccc
Q 015371 202 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-----YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 276 (408)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 276 (408)
|-.||+|.+-+-. .+....+..-.+.+++|.+++|+|... .+++.....++.+|.+..
T Consensus 150 G~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--------------- 212 (1081)
T KOG1538|consen 150 GMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--------------- 212 (1081)
T ss_pred eccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc---------------
Confidence 9999999987632 122222333345788999999999643 566666666777776654
Q ss_pred ccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCC
Q 015371 277 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356 (408)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 356 (408)
+.+..-+.-.- -..++.+-++|.|++.|+.|+.+.+|- +.|-.+.++-.....
T Consensus 213 --------------------~~Igk~r~L~F------dP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~W 265 (1081)
T KOG1538|consen 213 --------------------KQIGKDRALNF------DPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSW 265 (1081)
T ss_pred --------------------eeecccccCCC------CchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccccee
Confidence 11110000000 011225667899999999999999997 577777888767889
Q ss_pred eeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 357 VRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
|+.++..|++++++.|+.||+|.-|++-...
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 9999999999999999999999999986543
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=2.3e-22 Score=167.70 Aligned_cols=209 Identities=16% Similarity=0.202 Sum_probs=147.4
Q ss_pred eeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEE---EecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ---KDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+.... ......+..-.|.++.|+|...-|+..+..|.++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 5779999999999999 55689999999999999998542211 1122233345789999999877777777889999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC-CcceeeecCcCCC-ceE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSD-VNT 188 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-v~~ 188 (408)
+||+.+.+. ......| ..-|.+..|+.||..|++++.|..|+|||-+. ++.++...+|.+. =..
T Consensus 154 i~D~stqk~--~~el~~h------------~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsR 219 (1012)
T KOG1445|consen 154 ITDISTQKT--AVELSGH------------TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSR 219 (1012)
T ss_pred EEEcccCce--eecccCC------------chhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhhe
Confidence 999988765 3333333 33699999999999999999999999999864 5677777888753 344
Q ss_pred EEEecCCCCEEEEecCC----CeEEEEeccccccCCccceeeec-ccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCC
Q 015371 189 VCFADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 261 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 261 (408)
+.|. .+-..|++.+.+ ..|++||.+.. +..+.++.- ....|.--.+.||.++|+.++ .+.++..+.+..
T Consensus 220 v~w~-Gn~~rlisTGF~~~R~reV~~~Dtr~f---~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 220 VLWA-GNWERLISTGFTTKRIREVRAYDTRKF---GAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred eeec-cchhhhhhcccchhhheeeeeeecccc---CCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 6776 443355555443 46999998743 333333321 234455556788877655544 356677666543
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=6.5e-22 Score=151.57 Aligned_cols=244 Identities=16% Similarity=0.197 Sum_probs=176.0
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC---------ce------eee-cccCceeEEEEc-------CCCCeEEEEeCC
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---------PW------KVD-GMNSRVYTSQFS-------NDGSFFVAASQE 61 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------~~------~l~-~h~~~v~~~~~s-------~~~~~l~t~~~d 61 (408)
+...|||||.-+.+...+-..+.+.... +. .++ ...+.|...+|= |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3467999999776655555444443211 11 111 123567777774 678899999999
Q ss_pred CcEEEEEcCCCeeEEEecccccce---eeEEEEEeCCCCceEEEeecCcEEEEEECCC-CceeeeeeeeeeeeeeeecCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALR---WTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTIHKGLDFSADG 137 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~ 137 (408)
.-|++||.-+++....... ..|. ..-.+++|+|||..|++|. ...|+++|+.. +..........+. .
T Consensus 133 ~PIh~wdaftG~lraSy~~-ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-------k 203 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRA-YDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-------K 203 (406)
T ss_pred Cceeeeeccccccccchhh-hhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-------c
Confidence 9999999988855443322 2222 2456899999999998764 67899999943 3322222111110 1
Q ss_pred CCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC-CCeEEEEeccc
Q 015371 138 DEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRC 215 (408)
Q Consensus 138 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~iwd~~~ 215 (408)
.+...-|.+++|+| +.+.+++++....+-||.-..+.++..+-+|.+.|+.++|. ++++.|++|+. |-.|..||+|
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR- 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIR- 281 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeeh-
Confidence 12233589999999 56689999999999999988899999999999999999999 89999999886 6789999998
Q ss_pred cccCCccceeeecccC-CeE--EEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 216 FISKGRANGVLMGHLE-GIT--FIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 216 ~~~~~~~~~~~~~~~~-~i~--~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
....++..+..|.+ .-. -....|++++|++|+.||.|++||+..
T Consensus 282 --~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 --YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred --hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 35666667776655 222 345678999999999999999999987
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.91 E-value=9.8e-22 Score=169.08 Aligned_cols=282 Identities=13% Similarity=0.160 Sum_probs=199.0
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED 140 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (408)
+.+.||++.............. .|++++|+| +..+++.|+.+|+|.+||+.......... .......|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s---~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~--------ls~~~~sh 290 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPS---EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG--------LSALEVSH 290 (555)
T ss_pred ceEEEEecCCCCCceEEEecCC---ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc--------cccccccC
Confidence 4799999987633333333333 799999999 56777888899999999998776532211 12223356
Q ss_pred ccceEEEEEcCCCC--EEEEEecCCeEEEEECCCCcceee------ec------CcCCCceEEEEecCCCCEEEEecCCC
Q 015371 141 EFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLR------IP------AHKSDVNTVCFADETGHLIFSGSDDS 206 (408)
Q Consensus 141 ~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~------~~------~~~~~v~~l~~~~~~~~~l~~~~~dg 206 (408)
..++..+.|..+.. .+++++.||.|..|+++.-..... .. .....+++++|.+.+.+.+++|+++|
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 77899999977544 499999999999998764332110 11 12356899999988999999999999
Q ss_pred eEEEEeccccccCC----ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceee
Q 015371 207 LCKVWDRRCFISKG----RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 282 (408)
Q Consensus 207 ~i~iwd~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
.|.--+........ +....+..|.++|+++.++|=+..++..+.|.+++||.-...
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-------------------- 430 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-------------------- 430 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--------------------
Confidence 99874432211222 334456678999999999997765555555999999987621
Q ss_pred cccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC-cEEEEeeCCCeEEEEECCCC--ceeEEEccCCCCeee
Q 015371 283 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNAPVRD 359 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~ 359 (408)
..++..+..+.. . +++.+|||-. ..|+++..||.|.+||+... +++.+...+....+.
T Consensus 431 -------------~~Pl~~~~~~~~--~----v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~ 491 (555)
T KOG1587|consen 431 -------------ASPLLSLDSSPD--Y----VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTR 491 (555)
T ss_pred -------------CCcchhhhhccc--e----eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccce
Confidence 233444443332 1 3344555543 57888888999999999653 556666556667788
Q ss_pred eeEeCCCCeEEeecCCCcEEEEeeCCCCCCCccc
Q 015371 360 CCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 393 (408)
Q Consensus 360 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 393 (408)
+.|++.|+.|+.|...|.+++|++...-..+.+.
T Consensus 492 ~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~~~ 525 (555)
T KOG1587|consen 492 VRWSPNGKLLAVGDANGTTHILKLSESLAVPSPN 525 (555)
T ss_pred eecCCCCcEEEEecCCCcEEEEEcCchhhccCcc
Confidence 8999999999999999999999998655555544
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.1e-21 Score=163.83 Aligned_cols=329 Identities=14% Similarity=0.135 Sum_probs=220.1
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCcee------eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC-CeeEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWK------VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQ 76 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~------l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~ 76 (408)
.+++.+++.|.+....-......+........ -..|.-.++|.++||+++++|+|..||.|.+|.--. ...-.
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 47888999998765544333333322221121 225777799999999999999999999999998433 11222
Q ss_pred EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
.....+-|...|.+++|+++|.+|++|+..|.+.+|.+++++.+.+..+.. +|..+.++||+.+.
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs---------------~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS---------------PILHIVVSPDSDLY 307 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCC---------------eeEEEEEcCCCCeE
Confidence 223344566689999999999999999999999999999988544433322 69999999999999
Q ss_pred EEEecCCeEEEEECCCCcceeeecCc-----------CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee
Q 015371 157 VAAGSDNFIYVYDLQANKCSLRIPAH-----------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 225 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 225 (408)
+....|..|.+....+.+....+.+- .+-.+.++++ |..+.++-.+..|.|.+||+-+ ...+..
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~t----d~~i~~ 382 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYT----DSTIYK 382 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccc----cceeee
Confidence 99999999999988766555444332 3345678888 5666777888899999999752 222222
Q ss_pred ee-----------cccCCeEEEEecCCCCeEEEeec--------CC--eEEEEeCCCCcCccccccccccccccceeecc
Q 015371 226 LM-----------GHLEGITFIDSRRDGRYFISNGK--------DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 284 (408)
Q Consensus 226 ~~-----------~~~~~i~~~~~~~~~~~l~~~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
+. .+...++.+..+..|++++|.-. || .+++|-..........
T Consensus 383 ~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L---------------- 446 (792)
T KOG1963|consen 383 LQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL---------------- 446 (792)
T ss_pred EEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE----------------
Confidence 21 12334667777777888887542 33 3677876553221111
Q ss_pred cccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc----------eeEEEccCC
Q 015371 285 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA----------QVAKLDFHN 354 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~ 354 (408)
.......|..... ..++.... .....++++.||.+++|-+...+ +...-..|.
T Consensus 447 -------------~T~I~~PH~~~~v--at~~~~~~--rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k 509 (792)
T KOG1963|consen 447 -------------NTKINNPHGNAFV--ATIFLNPT--RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK 509 (792)
T ss_pred -------------EEEEecCCCceeE--EEEEecCc--ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence 0111223332222 22222222 12378999999999999884322 222222478
Q ss_pred CCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 355 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.++++++|+.||..| +.+.|++|.+||..+.
T Consensus 510 ~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 510 TPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred CcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 899999999999655 5567889999999883
No 172
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.5e-22 Score=159.86 Aligned_cols=252 Identities=18% Similarity=0.285 Sum_probs=183.3
Q ss_pred cceeeEEEEEeCCCC--ceEEEeecCcEEEEEECCCCcee--eeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEE
Q 015371 83 ALRWTITDTSLSPDQ--RFLVYASICAIVNIVDVGSSARE--SLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELV 157 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 157 (408)
-+.++|++++|+|.. +.+|+|...|+|-+||+.+.+.. ....+. .|..+|.++.|+| +-..++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~------------~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT------------PHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec------------cCCccccceEecCCChhhee
Confidence 345589999999954 57888999999999999643322 222222 3445899999999 556899
Q ss_pred EEecCCeEEEEECCCCcceeeecC--cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 158 AAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
+.+.||+|++-|++.......+.. ....+.++.|+ .+...++.+..=|...+||+|. .+.....+.-|...|.+
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~---~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT---DGSEYENLRLHKKKITS 327 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec---CCccchhhhhhhcccce
Confidence 999999999999988754443333 45567788888 5555666666667999999983 34445556678889999
Q ss_pred EEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 236 IDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 236 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
++++|.. .+|++++.|++++|||++....... ++.....|. ..
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr------rs 371 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR------RS 371 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc------ce
Confidence 9999965 4789999999999999998442211 112222233 33
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEECC----CCceeEEEccCCC------CeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDLV----SGAQVAKLDFHNA------PVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+.+..|||.+-.|++.+.|..|+|||.. ..++..++. |.. ......|.|+..++++|-.-..|-|+|-+
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 4455688888789999999999999983 344455553 321 23456899999999999988889999987
Q ss_pred CCC
Q 015371 385 GIG 387 (408)
Q Consensus 385 ~~~ 387 (408)
.++
T Consensus 451 ~~q 453 (498)
T KOG4328|consen 451 GGQ 453 (498)
T ss_pred CCE
Confidence 765
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.7e-22 Score=154.92 Aligned_cols=245 Identities=15% Similarity=0.150 Sum_probs=180.3
Q ss_pred cEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEE
Q 015371 14 RFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTIT 89 (408)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~ 89 (408)
-|+++++...+.+.+.... ...+.+|.+.|+.+.|.|+. +++++++.|..|++|++++..++..+-...+|...|.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 3788888888877776554 34688999999999999975 7899999999999999999999999989999999999
Q ss_pred EEEeCCCCceEEEeecCcEEEEEECCCCceeeee----eeeeeee--------eeeec--CCCCCccceEEEEEcCCCCE
Q 015371 90 DTSLSPDQRFLVYASICAIVNIVDVGSSARESLA----NVTIHKG--------LDFSA--DGDEDEFGIFSVKFSTDGQE 155 (408)
Q Consensus 90 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~----~~~~~~~--------~~~~~--~~~~~~~~i~~~~~~~~~~~ 155 (408)
++.|+++|.+|++++.|.++++|++...+..... .+...+. ..+.. ..+-|...|-|+.|- |.+
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 9999999999999999999999999854322111 1111100 01111 234566677777775 578
Q ss_pred EEEEecCCeEEEEEC-CCCcc-------------eeeecCcCCCceEEEEe-cCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 156 LVAAGSDNFIYVYDL-QANKC-------------SLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 156 l~~~~~dg~i~i~d~-~~~~~-------------~~~~~~~~~~v~~l~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
+++-+-++.|..|.. +-++. ...+.-....|.-+.|. .+-.+.|+.|...|.|.+||++...+..
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 898888999999987 21111 11222233445555443 1567889999999999999998543332
Q ss_pred ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 221 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 221 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
............|...+|+.|+..|+..+.|++|.-||-.
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2222222234678899999999999999999999999854
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.5e-21 Score=140.74 Aligned_cols=280 Identities=16% Similarity=0.260 Sum_probs=192.5
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCC-------eeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..|.+-+++|.+++|+.|..+|+|.+..+.+- ...........|+++|..++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 45777899999999999999999999998642 1112233447888999999998 55677665 69999998
Q ss_pred CCCCce----eee--eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCce
Q 015371 114 VGSSAR----ESL--ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 114 ~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
...... +.. ...+.+.+.. .--.|+++...|..+-++.++.|+.++-||+++|+....+++|+..|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~-------evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAV-------EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcc-------cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 764332 111 1111222111 112589999999777777777899999999999999999999999999
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec---------c-cCCeEEEEecCCCCeEEEeecCCeEEEE
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG---------H-LEGITFIDSRRDGRYFISNGKDQTTKLW 257 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw 257 (408)
++.-- .....+++|++||++|+||.+ +.+.+..+.. | ...|.+++.+ ...+++|+ ...+.+|
T Consensus 161 ~vv~R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 161 SVVGR-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLW 232 (325)
T ss_pred eeeec-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEE
Confidence 99985 455678999999999999976 5555554432 2 2235566554 56777765 5579999
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEE
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 337 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 337 (408)
.++...+ .++..+.++..... | +.+.+++++..+.|.
T Consensus 233 hLrsse~--------------------------------t~vfpipa~v~~v~---------F--~~d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 233 HLRSSES--------------------------------TCVFPIPARVHLVD---------F--VDDCVLIGGEGNHVQ 269 (325)
T ss_pred eccCCCc--------------------------------eEEEecccceeEee---------e--ecceEEEecccccee
Confidence 9998432 22333333332111 2 256788888888899
Q ss_pred EEECCCCceeEEEccCCCCeeeeeEeCCC-CeEEeecCCCcEEEEe
Q 015371 338 IYDLVSGAQVAKLDFHNAPVRDCCWHPIY-PMLISSSWDCNIVRWE 382 (408)
Q Consensus 338 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~ 382 (408)
-|.+ +|.............++..|+..- ++|-.++..+.+.|+.
T Consensus 270 ~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 270 SYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 9987 565555555444556666665433 3555567777777763
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=3e-21 Score=145.74 Aligned_cols=290 Identities=14% Similarity=0.185 Sum_probs=199.0
Q ss_pred CceeEEEEcC--C-CCeEEEEeC----CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCc-----eEEEeecCcE
Q 015371 41 SRVYTSQFSN--D-GSFFVAASQ----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-----FLVYASICAI 108 (408)
Q Consensus 41 ~~v~~~~~s~--~-~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~ 108 (408)
-.++++.||. + +.+||.|+. ...|.|-.++.............|..+++.+.|.|+.. +||++ +..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 3577888883 2 457888863 35677776654322222233457788999999999863 55554 458
Q ss_pred EEEEECCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCc---ceeeecCc
Q 015371 109 VNIVDVGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANK---CSLRIPAH 182 (408)
Q Consensus 109 i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~ 182 (408)
+|+|.+...+ ......+..++. ..+..++++..|+. +-+++.+++-|.+..|||++++. ....+-+|
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kn-------s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKN-------SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcc-------cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 9999997533 222222222222 23445899999988 67788999999999999999873 35667889
Q ss_pred CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC-CCeEEEeecC-CeEEEEeCC
Q 015371 183 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKD-QTTKLWDIR 260 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d-~~i~iwd~~ 260 (408)
..+|..++|....-+.|++.+.||.+|+||+|... ....+..-.....+...++|++. -+++++-..| ..|.|.|+|
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999995556899999999999999998421 22222222223567888999874 4577776655 459999999
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
.. ..++..+.+|...+.. ..|.|. ....|++++.|..+.+||
T Consensus 275 ~P---------------------------------~tpva~L~~H~a~VNg--IaWaPh---S~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 275 VP---------------------------------CTPVARLRNHQASVNG--IAWAPH---SSSHICTAGDDCQALIWD 316 (364)
T ss_pred CC---------------------------------CcceehhhcCcccccc--eEecCC---CCceeeecCCcceEEEEe
Confidence 73 4677888888854443 334443 357899999999999999
Q ss_pred CCCCc------eeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEE
Q 015371 341 LVSGA------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVR 380 (408)
Q Consensus 341 ~~~~~------~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~i 380 (408)
+.+.- ++..+. -.+.|+.++|++... +++.+. ++.+.+
T Consensus 317 l~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 97542 222333 467899999996544 676654 344443
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=9.4e-20 Score=161.51 Aligned_cols=292 Identities=29% Similarity=0.463 Sum_probs=220.4
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-eEEEecccccceeeEEEEEe-CCCCc-eEEEeec-CcEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSL-SPDQR-FLVYASI-CAIVN 110 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~~-dg~i~ 110 (408)
.+.+|...+.++.+.+.+..++.++.|+.+.+|+..... .......... ..+..+.+ ++++. .++..+. ++.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3333322121 25666666 88887 5555444 89999
Q ss_pred EEECCC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCcceeeecCcCCCceE
Q 015371 111 IVDVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNT 188 (408)
Q Consensus 111 ~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~ 188 (408)
+|+... ... ......+ ...|..+.|+|++..+++++. ++.+++|++..+..+..+..|...|.+
T Consensus 138 ~~~~~~~~~~--~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 138 LWDLSTPGKL--IRTLEGH------------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred EEEecCCCeE--EEEEecC------------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 999987 222 2222233 236889999999998888885 999999999988888888889999999
Q ss_pred EEEecCCCC-EEEEecCCCeEEEEeccccccCCccce-eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 189 VCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 189 l~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
++|+ +++. ++++++.|+.|++||.+ .+.... .+.+|.... ...|+|++..+++++.|+.+++|+++....
T Consensus 204 ~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-- 275 (466)
T COG2319 204 LAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-- 275 (466)
T ss_pred EEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--
Confidence 9999 7776 55555999999999854 455555 577787775 448999998899999999999999987321
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
.+..+..|. ..+....++|++..+++++.|+.+.+||..+...
T Consensus 276 -------------------------------~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 276 -------------------------------LLRTLSGHS------SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred -------------------------------EEEEEecCC------ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 122222332 1222235667788888899998899999988877
Q ss_pred eEEEc--cCCCCeeeeeEeCCCCeEEee-cCCCcEEEEeeCCCC
Q 015371 347 VAKLD--FHNAPVRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 387 (408)
Q Consensus 347 ~~~~~--~~~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~~ 387 (408)
..... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 76665 788889999994332455555 688999999998765
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2e-21 Score=160.82 Aligned_cols=289 Identities=15% Similarity=0.155 Sum_probs=212.0
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCceeee--cccCceeEEEEcCCCC--eEEEEeCCCcEEEEEcCCC-------
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD--GMNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKN------- 72 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~------- 72 (408)
-|+|+..|.|.++++++.+...++|-......+. ...+.|.|++|+|.+. .||++-.+ .+.|-+..-+
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGP 481 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcc
Confidence 4789999999999999999977777665544333 3457899999999764 35544333 2434332111
Q ss_pred --------------------------eeEE-EecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeee
Q 015371 73 --------------------------WKIQ-KDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESL 122 (408)
Q Consensus 73 --------------------------~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~ 122 (408)
.+.. .....-.|...|..+.|+..|.||++...+ ..|.|.++.....+
T Consensus 482 t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-- 559 (733)
T KOG0650|consen 482 TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-- 559 (733)
T ss_pred hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--
Confidence 0000 001112244579999999999999988654 46888888765443
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEe
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~ 202 (408)
..+...++ .|.++.|+|...+|++++. ..|++||+..++.+..+......|..|+.+ +.|.-|+.|
T Consensus 560 ~PF~kskG------------~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnli~g 625 (733)
T KOG0650|consen 560 SPFRKSKG------------LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNLILG 625 (733)
T ss_pred CchhhcCC------------ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeEEEe
Confidence 22222223 5999999999999999875 679999999988888887778899999999 888899999
Q ss_pred cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceee
Q 015371 203 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 282 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
+.|+.+..+|+. ...++.+.+.-|...+++++|++.-.++++|+.||++.++.-.-..
T Consensus 626 s~d~k~~WfDld---lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~------------------- 683 (733)
T KOG0650|consen 626 SYDKKMCWFDLD---LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN------------------- 683 (733)
T ss_pred cCCCeeEEEEcc---cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh-------------------
Confidence 999999999985 4667888899999999999999999999999999999998644311
Q ss_pred cccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEE
Q 015371 283 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 339 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vw 339 (408)
..+..+---++..+.+|..... -++....|+|...+|++++.||+|++|
T Consensus 684 ------Dl~qnpliVPlK~L~gH~~~~~--~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 ------DLLQNPLIVPLKRLRGHEKTND--LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------hhhcCCceEeeeeccCceeecc--cceEeecccCCCceEEecCCCceEEee
Confidence 1112222355677777764311 234455677789999999999999998
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.90 E-value=3.1e-20 Score=156.71 Aligned_cols=279 Identities=12% Similarity=0.111 Sum_probs=173.9
Q ss_pred EEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEECCC-Cceeeeeeeeeeeeeee
Q 015371 56 VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGS-SARESLANVTIHKGLDF 133 (408)
Q Consensus 56 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~ 133 (408)
++...++.|++|++.+...+...... ........++++|++++|++++ .++.|.+|++.. +...........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~----- 79 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP----- 79 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-----
Confidence 34467899999999643222211111 1123577889999999987765 478899999863 322212111110
Q ss_pred ecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCC-c---ceeeecCcCCCceEEEEecCCCCEEE-EecCCCe
Q 015371 134 SADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN-K---CSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSL 207 (408)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~---~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~ 207 (408)
.....++++|+++++++++. ++.|.+|++.+. . .+..+. +.....+++++ |++++++ +...++.
T Consensus 80 --------~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 80 --------GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID-PDNRTLWVPCLKEDR 149 (330)
T ss_pred --------CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC-CCCCEEEEeeCCCCE
Confidence 13568999999999988865 789999999643 2 222222 23456788899 6777665 5556799
Q ss_pred EEEEeccccccCCccc------eeeecccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccce
Q 015371 208 CKVWDRRCFISKGRAN------GVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 280 (408)
Q Consensus 208 i~iwd~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 280 (408)
|.+||++. .+... ... ........+.|+|++++++++.. ++.|.+|+++......
T Consensus 150 v~v~d~~~---~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-------------- 211 (330)
T PRK11028 150 IRLFTLSD---DGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-------------- 211 (330)
T ss_pred EEEEEECC---CCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--------------
Confidence 99999852 11111 111 12344678999999999988776 8999999997421000
Q ss_pred eecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCCCce----eEEEccCCC
Q 015371 281 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQ----VAKLDFHNA 355 (408)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~----~~~~~~~~~ 355 (408)
..+..+.................++|++++++++.. ++.|.+|++..... +..... ..
T Consensus 212 ----------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~ 274 (330)
T PRK11028 212 ----------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ET 274 (330)
T ss_pred ----------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cc
Confidence 001111110000000011123457889999998865 68999999865432 222222 23
Q ss_pred CeeeeeEeCCCCeEEeecC-CCcEEEEeeCC
Q 015371 356 PVRDCCWHPIYPMLISSSW-DCNIVRWEIPG 385 (408)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 385 (408)
....+.++|+|++|+++.. +++|.+|+++.
T Consensus 275 ~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 275 QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 4567899999998887765 89999999864
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=2.5e-21 Score=146.19 Aligned_cols=252 Identities=20% Similarity=0.340 Sum_probs=178.9
Q ss_pred eEEEEEeCC---CCceEEEeec----CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-----
Q 015371 87 TITDTSLSP---DQRFLVYASI----CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ----- 154 (408)
Q Consensus 87 ~v~~~~~~~---~~~~l~~~~~----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----- 154 (408)
++.++.|+. ...+|+.|+. .+.|.+..+.....+.... ..-+|..+++.+.|.|+..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-----------a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED-----------ANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc-----------CCCCCCCCccceEecCCccccCcc
Confidence 688889984 3456787763 3456665554222111111 1124666899999999763
Q ss_pred EEEEEecCCeEEEEECCCCcce----eee-----cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee
Q 015371 155 ELVAAGSDNFIYVYDLQANKCS----LRI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 225 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~----~~~-----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 225 (408)
+|+++ +..+++|.+...+.. ..+ ..+..++++..|+.-+.++|.+++-|-++.|||+... ..+.....
T Consensus 115 lLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~-~~~~vkTQ 191 (364)
T KOG0290|consen 115 LLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG-VSGTVKTQ 191 (364)
T ss_pred hhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec-cccceeeE
Confidence 44444 457999998642211 111 3467899999999889999999999999999998621 13345667
Q ss_pred eecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec
Q 015371 226 LMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 304 (408)
Q Consensus 226 ~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
+.+|...|..++|...+ +.|++.+.||.+++||+|.....+.. ++.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII---------------------------------YE~ 238 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII---------------------------------YED 238 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE---------------------------------ecC
Confidence 88999999999999855 47899999999999999984432221 111
Q ss_pred ccceeeEEEEEeeccccCCCcEEEEeeCC-CeEEEEECCCC-ceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEE
Q 015371 305 HSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRW 381 (408)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw 381 (408)
........+..|+.. |-+++|+-..| ..|.+.|++.. .++.++++|.+.|+.++|.|... .|+|++.|..+.+|
T Consensus 239 p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred CCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 111233334444332 56788887766 46999999875 57889999999999999999766 89999999999999
Q ss_pred eeCCCCC
Q 015371 382 EIPGIGE 388 (408)
Q Consensus 382 ~~~~~~~ 388 (408)
|+.....
T Consensus 316 Dl~q~~~ 322 (364)
T KOG0290|consen 316 DLQQMPR 322 (364)
T ss_pred ecccccc
Confidence 9988655
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.90 E-value=8.9e-21 Score=145.18 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=171.0
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEEC-C
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV-G 115 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~-~ 115 (408)
.-...+|+|.+|++|+..+|.+.....|.||.......-........|...|+.+.|+|..+.|++++.|..-++|.. .
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 334578999999999999999999999999998877545556667788889999999999999999999999999998 5
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcce----eeecCcCCCceEEEE
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS----LRIPAHKSDVNTVCF 191 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~l~~ 191 (408)
.++-+....+..+.. ..+++.|+|.++.+++|+....|.||-++...-- +.-+.+...|++++|
T Consensus 87 ~~~WkptlvLlRiNr------------AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINR------------AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CCeeccceeEEEecc------------ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 555444444444433 6999999999999999999999999988755322 122446788999999
Q ss_pred ecCCCCEEEEecCCCeEEEEeccc--------------cccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEE
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRC--------------FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 257 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 257 (408)
+ +++-++++|+.|+.+++|..-- ..+-+..+..+....+.+..+.|+|+|..|+-.+.|..+.+-
T Consensus 155 h-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 H-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred c-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9 8899999999999999997420 011223333444567889999999999999999999999999
Q ss_pred eCCCC
Q 015371 258 DIRKM 262 (408)
Q Consensus 258 d~~~~ 262 (408)
|....
T Consensus 234 da~~p 238 (361)
T KOG1523|consen 234 DAAGP 238 (361)
T ss_pred ecCCC
Confidence 87764
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.1e-22 Score=163.05 Aligned_cols=243 Identities=19% Similarity=0.286 Sum_probs=175.7
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC--------CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEE
Q 015371 138 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 209 (408)
Q Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 209 (408)
..|...|..+.|.+....|++++.||.|.+|+++. -+++.++.+|.++|.|+++. .++..+++|+.||+|+
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIR 369 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceee
Confidence 34566799999999999999999999999999932 24677889999999999998 9999999999999999
Q ss_pred EEeccc------cccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 210 VWDRRC------FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 210 iwd~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
.|++.. ..........+.||.+.+..+++++....|++++.||+++.|+................+...+....
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeecc
Confidence 996541 11122445678899999999999999999999999999999998875552221111111111111100
Q ss_pred c------cccceeec----cCCCcceeeeecccc-----eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 284 Y------PSYARRLK----HPHDQSLATYKGHSV-----LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 284 ~------~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
. ........ ......+..+..... .......+ ..|.+.+.+++..|+.|+++|..+++++.
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV----s~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV----SHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE----ecCCCCeeEecccCCceecccccccccch
Confidence 0 00000000 000111111111111 11122233 34557889999999999999999999999
Q ss_pred EEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 349 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
....|...++++++.|+|.+|++++.||.+++|++..
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 9999999999999999999999999999999999854
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=2e-18 Score=153.06 Aligned_cols=312 Identities=26% Similarity=0.402 Sum_probs=222.9
Q ss_pred cCCcc-EEEe-ecCceEEEEEEec----CceeeecccCceeEEEEcCCCCeEEEEeC-CCcEEEEEcCCCeeEEEecccc
Q 015371 10 SGRGR-FSAA-DSCHVLSRYLPVN----GPWKVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 10 s~dg~-~~~~-~~~~~~~~~~~~~----~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
++++. ++.. ...+.....+... ....+.+|...|.+++|+|++.++++++. |+.+++|+......+....
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 195 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA--- 195 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec---
Confidence 77777 4444 3324444555443 34568899999999999999998898885 9999999998754444332
Q ss_pred cceeeEEEEEeCCCCc-eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 83 ALRWTITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
.|...|.+++|+|++. .+++++.|+.+++||...+..... ....+. ... ...|++++..+++++.
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~------------~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHS------------DSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-ecCCCC------------cce-eEeECCCCCEEEEecC
Confidence 3666899999999998 555558999999998774433221 122222 133 2279999988899999
Q ss_pred CCeEEEEECCCCcc-eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee--cccCCeEEEEe
Q 015371 162 DNFIYVYDLQANKC-SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDS 238 (408)
Q Consensus 162 dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~ 238 (408)
++.+++|++..... ...+..|...+.++.|. |++..+++++.|+.+.+||.+ ......... .|...+..+.+
T Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred CCcEEEeeecCCCcEEEEEecCCccEEEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEE
Confidence 99999999987664 44446788999999999 577777778889999999864 444344443 77778999999
Q ss_pred cCCCCeEEEe-ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 239 RRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 239 ~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
.+++..++.+ ..|+.+.+|++.... .......... ...
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------------------~~~~~~~~~~-------~~~ 375 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGK----------------------------------PLKTLEGHSN-------VLS 375 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCc----------------------------------eeEEecCCce-------EEE
Confidence 4332455555 678889999988722 1111111110 222
Q ss_pred ccccCCCcEEE-EeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 318 PEYSTAQKYIY-TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 318 ~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
..+++ ...+. .+..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 376 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 376 VSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 23444 23333 378899999999998887777765447899999999999999999999999999987
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.88 E-value=8.1e-19 Score=137.17 Aligned_cols=279 Identities=14% Similarity=0.244 Sum_probs=196.5
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC--cEEEEEECCCC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--AIVNIVDVGSS 117 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~w~~~~~ 117 (408)
...+..+.|+.|...|..|+.|| .++|+.+...+... .......|.-+-|+. .++|..+.+ ..+++.++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~---~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS---KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc---ccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999998 78998876544221 112222566777764 455554433 45888888766
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC---cCCCceEEEEecC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA---HKSDVNTVCFADE 194 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~l~~~~~ 194 (408)
...+...++. +|.++.++. ++|+++-.+ .|+|||+++.+.+.++.. +...+.+++++ .
T Consensus 79 ~~ICe~~fpt---------------~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n-~ 139 (391)
T KOG2110|consen 79 TTICEIFFPT---------------SILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPN-N 139 (391)
T ss_pred ceEEEEecCC---------------ceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccC-C
Confidence 5544433322 588888864 467776554 499999999999888753 44456666665 4
Q ss_pred CCCEEEEe--cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe-EEEEeCCCCcCccccccc
Q 015371 195 TGHLIFSG--SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKLWDIRKMSSNTTDNSR 271 (408)
Q Consensus 195 ~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~ 271 (408)
.+.+++-- ...|.|.+||.. ..+.+..+..|.+.+.+++|+++|.+|+++++.|+ ||++.+.+
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~---------- 205 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE---------- 205 (391)
T ss_pred CCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC----------
Confidence 45566643 246899999964 78888999999999999999999999999999998 88999877
Q ss_pred cccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce-----
Q 015371 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ----- 346 (408)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----- 346 (408)
++.+..|+.-.. ...+++++|+|++.+|++.+..++|++|.+..-..
T Consensus 206 ------------------------G~kl~eFRRG~~----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~ 257 (391)
T KOG2110|consen 206 ------------------------GQKLYEFRRGTY----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPES 257 (391)
T ss_pred ------------------------ccEeeeeeCCce----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCC
Confidence 555666654332 34567889999999999999999999998853210
Q ss_pred ----------------------e----------EEEccCCCCe-eeeeEe--CCCCeEEeecCCCcEEEEeeCC
Q 015371 347 ----------------------V----------AKLDFHNAPV-RDCCWH--PIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 347 ----------------------~----------~~~~~~~~~v-~~~~~~--~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
+ ...+...... ..+.+. +..+.+..++.||.++.|.++.
T Consensus 258 p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 258 PTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred CCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0 0000011111 223333 4667888999999999999876
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.1e-21 Score=161.10 Aligned_cols=273 Identities=11% Similarity=0.122 Sum_probs=196.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC-----CeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-----NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
+.+..|.+.|+.++|.|-...|++++.||.+++|+++. ...+.......+|.++|.|++..++++.+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 46789999999999999999999999999999999932 3456667778899999999999999999999999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC--cCCCc
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDV 186 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v 186 (408)
|+.|++... .. ....+..........+|...++.+++++...+|++++.||+++.|+.....+ .++.. ..+..
T Consensus 368 I~~w~~p~n-~d---p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 368 IRCWNLPPN-QD---PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred eeeeccCCC-CC---cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 999988622 11 1112222233334456777899999999999999999999999999876665 33322 22344
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-------ccCCeEEEEecCCCCeEEEeecCCeEEEEeC
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 259 (408)
.++.+........++...-+.-.++++. ....+..+.. ....+..+.++|...+.+++..|+.|+++|.
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 6666652222222222222222233321 1222222211 1245677889999999999999999999998
Q ss_pred CCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEE
Q 015371 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 339 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vw 339 (408)
.+ +..+.....|. ..+.+.++.|+|-+|++++.||.+++|
T Consensus 519 ~~----------------------------------~~~l~s~~a~~------~svtslai~~ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 519 KT----------------------------------GKILHSMVAHK------DSVTSLAIDPNGPYLMSGSHDGSVRLW 558 (577)
T ss_pred cc----------------------------------cccchheeecc------ceecceeecCCCceEEeecCCceeehh
Confidence 87 45555555565 334455788999999999999999999
Q ss_pred ECCCCceeEEEccCCC
Q 015371 340 DLVSGAQVAKLDFHNA 355 (408)
Q Consensus 340 d~~~~~~~~~~~~~~~ 355 (408)
.+....++.....|..
T Consensus 559 kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 559 KLDVKTCVLESTAHRK 574 (577)
T ss_pred hccchheeeccccccc
Confidence 9988888777766643
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=2.4e-20 Score=160.65 Aligned_cols=278 Identities=13% Similarity=0.098 Sum_probs=191.1
Q ss_pred ceEEEEEEecCceeeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeE---EEecccccceeeEEEEEeCCCC
Q 015371 22 HVLSRYLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQ 97 (408)
Q Consensus 22 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 97 (408)
..+|.+.....+...-.-...|.|+.|+| +..++|.|..+|+|.+||+..+... ........|..+++.+.|..+.
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 44555555545555556678899999999 5678888899999999999876442 1122345677899999997754
Q ss_pred c--eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCc
Q 015371 98 R--FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANK 174 (408)
Q Consensus 98 ~--~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 174 (408)
. -+++++.||.|..|+++.-............ ............++++.|.+ +-..+++|+.+|.|..-+-...+
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~--~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK--KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccc--cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 4 4999999999999987644321111100000 00001112233689999988 56689999999998874433221
Q ss_pred --------ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC-CeE
Q 015371 175 --------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYF 245 (408)
Q Consensus 175 --------~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 245 (408)
....+..|.++|+++.++|-....|++++ |-+++||.-. ....++..+..+...+++++|||.. ..|
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 23345668999999999965566666666 9999999942 2566777777788889999999965 467
Q ss_pred EEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCc
Q 015371 246 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 325 (408)
Q Consensus 246 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (408)
+++..||.+.+||+..... .++....... .......++++|+
T Consensus 458 ~~~d~~G~l~iWDLl~~~~--------------------------------~Pv~s~~~~~------~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDE--------------------------------EPVLSQKVCS------PALTRVRWSPNGK 499 (555)
T ss_pred EEEcCCCceehhhhhcccc--------------------------------CCcccccccc------cccceeecCCCCc
Confidence 7888899999999987332 2222222221 1222335777799
Q ss_pred EEEEeeCCCeEEEEECCC
Q 015371 326 YIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~ 343 (408)
.|++|...|.+++|++..
T Consensus 500 ~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 500 LLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEecCCCcEEEEEcCc
Confidence 999999999999999853
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-20 Score=165.61 Aligned_cols=316 Identities=16% Similarity=0.179 Sum_probs=200.8
Q ss_pred eeeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCe----eEEEecccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
..|..|...|..++.+++. .+++||+.||+|++|+...-. ..............+.++...+.++.+|+++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 3567899999999988765 999999999999999986521 12222223324457999999999999999999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCC-EEEEEecCCeEEEEECCCCcceeeec--CcCC
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQ-ELVAAGSDNFIYVYDLQANKCSLRIP--AHKS 184 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~ 184 (408)
|++.+++............ ..+..+....-+..-+|.. .+. .++.+...+.|..||++......+++ ...+
T Consensus 1122 v~~~~id~~~~~~~~~~~~-----ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQV-----RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred EEEEEccccccccceeeee-----ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999997632211111000 0011111111233444443 233 68888888999999998876655553 3457
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-ecccCCeEEEEecCC---CCeEEEee--cCCeEEEEe
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRD---GRYFISNG--KDQTTKLWD 258 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~--~d~~i~iwd 258 (408)
.|++++.+ +.++++++|+..|.+.+||+| -..++..+ .++..+|+.+..+|- ....++++ ..+.|.+|+
T Consensus 1197 ~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1197 LVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 89999999 888899999999999999998 33333333 234467777776653 34455444 467899999
Q ss_pred CCCCcCccccccc--cccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeE
Q 015371 259 IRKMSSNTTDNSR--LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSV 336 (408)
Q Consensus 259 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 336 (408)
+.++.+....-.. ...+.+ ..+... .-+ ........+ .+...+.++.+|+.|..|
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~--------------~~Ps~~---~~k--p~~~~~~~~----~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSY--------------ALPSND---ARK--PDSLAGISC----GVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred cccCcceEEEEcCCCCcchhh--------------hccccc---CCC--CCcccceee----ecccCCceeeecCCccce
Confidence 9986554332111 000000 000000 000 000111111 122336789999999999
Q ss_pred EEEECCCCcee-----------------------------EE-------------------E--------ccCCCCeeee
Q 015371 337 YIYDLVSGAQV-----------------------------AK-------------------L--------DFHNAPVRDC 360 (408)
Q Consensus 337 ~vwd~~~~~~~-----------------------------~~-------------------~--------~~~~~~v~~~ 360 (408)
+.||....+.. .. . ..|..+|+++
T Consensus 1329 R~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1329 RKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 99997543221 00 0 0277789999
Q ss_pred eEeCCCC-eEEeecCCCcEEEEe
Q 015371 361 CWHPIYP-MLISSSWDCNIVRWE 382 (408)
Q Consensus 361 ~~~~~~~-~l~s~~~dg~v~iw~ 382 (408)
++....+ +|++++.||.|+||.
T Consensus 1409 a~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCccEEEEecCCCeeeecC
Confidence 8876544 899999999999994
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=2.5e-20 Score=146.70 Aligned_cols=211 Identities=17% Similarity=0.226 Sum_probs=161.1
Q ss_pred eeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEE----EecccccceeeEEEEEeCCC-CceEEEeecCcE
Q 015371 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ----KDIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 108 (408)
.+.||+++|..++|+| +...+|+|+.|.+|.||++..+.... ....+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4669999999999999 56789999999999999998763332 23456678889999999995 567889999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCC-ce
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD-VN 187 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~ 187 (408)
|.+|++.+++.... +. |...|.++.|+.||.+|++++.|..|+|||.++++.+..-.+|.+. -.
T Consensus 156 v~iWnv~tgeali~--l~-------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT--LD-------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred EEEEeccCCceeee--cC-------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 99999999875322 22 3336999999999999999999999999999999998888777753 34
Q ss_pred EEEEecCCCCEEEEec---CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCc
Q 015371 188 TVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMS 263 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 263 (408)
..-|. .++.++-+|- .+..+-+||..+... ......+ ...+.|.---+.+|.+.+..++ .|+.|+.|.+.+..
T Consensus 221 Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~e-P~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 221 RAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEE-PIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEe-ccCceeeeccccccccceeccCcccccC-cceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 45566 6777555553 467899999764322 2222333 2455666666888888766554 59999999998743
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=9.6e-20 Score=143.44 Aligned_cols=206 Identities=17% Similarity=0.265 Sum_probs=161.0
Q ss_pred CCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCC-------cceeeecCcCCCceEEEEecCCCCEEEEecCCCeE
Q 015371 137 GDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 208 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 208 (408)
..+|..+|..++|+| +...||+|+.|.+|.||.+..+ +++..+.+|...|--++|+|.-.+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 346777999999999 6678999999999999998654 44567789999999999998889999999999999
Q ss_pred EEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccc
Q 015371 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 288 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (408)
.+|++. +++.+..+. |...|.++.|+.||.+|++.+.|..|++||.++
T Consensus 157 ~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~--------------------------- 204 (472)
T KOG0303|consen 157 SIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR--------------------------- 204 (472)
T ss_pred EEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC---------------------------
Confidence 999964 777777776 999999999999999999999999999999998
Q ss_pred eeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee---CCCeEEEEECCCCce---eEEEccCCCCeeeeeE
Q 015371 289 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCW 362 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~ 362 (408)
++.+..-.+|...... +.+|- .+|.++-+|- .+..+-+||-.+.+. ..++. .++.|.---|
T Consensus 205 -------~~~v~e~~~heG~k~~-Raifl----~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFy 271 (472)
T KOG0303|consen 205 -------GTVVSEGVAHEGAKPA-RAIFL----ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFY 271 (472)
T ss_pred -------CcEeeecccccCCCcc-eeEEe----ccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeee
Confidence 3444444455443322 33332 3577555554 367899999876543 34444 3456777778
Q ss_pred eCCCCeEEe-ecCCCcEEEEeeCCCC
Q 015371 363 HPIYPMLIS-SSWDCNIVRWEIPGIG 387 (408)
Q Consensus 363 ~~~~~~l~s-~~~dg~v~iw~~~~~~ 387 (408)
.+|.+++.. |-.|+.|+.|.+....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 999886655 4569999999998755
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=152.48 Aligned_cols=256 Identities=16% Similarity=0.184 Sum_probs=182.5
Q ss_pred eeeEecCCccEEEeecCceEEEEE--EecCceeeecccCceeEEEE-cC-------CCCeEEEEeCCCcEEEEEcCCCee
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYL--PVNGPWKVDGMNSRVYTSQF-SN-------DGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~v~~~~~-s~-------~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
.|+.|+.+...+.+...+.....+ .......+.-..+.|....+ -+ ....|+.++.||.+.|-+-...
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~r-- 95 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSAR-- 95 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccch--
Confidence 367777776655544444433322 22222222222222222222 11 2356888899999999874332
Q ss_pred EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
.......|.+.+.+-.|+|||.-|+++++||.|++|.-...-...+. ... .+|.|++|.|+.+
T Consensus 96 --VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~---Q~~------------~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 96 --VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV---QNE------------ESIRCARWAPNSN 158 (737)
T ss_pred --hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh---hcC------------ceeEEEEECCCCC
Confidence 22234567779999999999999999999999999986544221111 111 1699999999988
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
.++.+. .+.+.|=.+.....+...++|.+-|.++.|+ +..+++++|++|-..++||- .+..+.....|.-+|+
T Consensus 159 ~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvWD~-----~G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 159 SIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIWDA-----QGANLFTSAAEEYAIT 231 (737)
T ss_pred ceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEeecc-----cCcccccCChhcccee
Confidence 777664 5778888888777788889999999999999 88999999999999999994 6888888889999999
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+++|.|+ +.++.++.+ ++++=..+. ..
T Consensus 232 Sva~npd-~~~~v~S~n-t~R~~~p~~---------------------------------------------------GS 258 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSYN-TARFSSPRV---------------------------------------------------GS 258 (737)
T ss_pred eeeeccc-cceeeeeee-eeeecCCCc---------------------------------------------------cc
Confidence 9999999 666666543 444222221 45
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEE
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIY 339 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vw 339 (408)
++.++||+||..+++|+..|.+.+=
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEEe
Confidence 6778899999999999999987653
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.3e-20 Score=155.98 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=174.1
Q ss_pred eCCCCceEEE--eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEE
Q 015371 93 LSPDQRFLVY--ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYD 169 (408)
Q Consensus 93 ~~~~~~~l~~--~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 169 (408)
|+.+..++++ ++..|.|-||++..........+.... ....|+.+.|.| |..+|++++.||.|++|.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~----------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF----------NGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc----------cCceeeecccCCCChHHeeecccCceEEEEE
Confidence 4445555553 456789999999765432222211110 112599999999 788999999999999999
Q ss_pred CCCC-------cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 170 LQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 170 ~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
+..+ .+...+..|...|+++.|+|--.+.|++++.|-+|++||++ .......+.+|.+.|..++|+|+|
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSPDG 732 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECCCC
Confidence 8754 34556788999999999998888999999999999999986 677788899999999999999999
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
+.+++.+.||+|++|+.+... +++..-++... ....+..|..
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e---------------------------------~pv~Eg~gpvg-tRgARi~wac---- 774 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSRE---------------------------------QPVYEGKGPVG-TRGARILWAC---- 774 (1012)
T ss_pred cceeeeecCceEEEeCCCCCC---------------------------------CccccCCCCcc-CcceeEEEEe----
Confidence 999999999999999988743 22222222211 1222344444
Q ss_pred CCcEEEEeeCC----CeEEEEECCCC--ceeEEEccC-CCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCCCC
Q 015371 323 AQKYIYTGSSD----NSVYIYDLVSG--AQVAKLDFH-NAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 323 ~~~~l~~~~~d----g~i~vwd~~~~--~~~~~~~~~-~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~ 388 (408)
||+++++.+.| ..|.+||.++. ..+.+..-. .-.+.--.+.+|.. ++++|-.|..|++|.+-....
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 58888887765 46889987654 233332211 11122234566666 677888899999999866544
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=131.75 Aligned_cols=252 Identities=14% Similarity=0.239 Sum_probs=173.4
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.|.+-+|+|.+++|++|..+|.|.+..+..-...... .+ +.........|..++..++|. ..+|++|+ ||.|+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-~~---gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-PP---GKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-CC---CCcceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence 4677789999999999999999999988643221110 00 101111124677799999998 33566665 69999
Q ss_pred EEECCCCcc------eee--ecCc-----CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCe
Q 015371 167 VYDLQANKC------SLR--IPAH-----KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 233 (408)
Q Consensus 167 i~d~~~~~~------~~~--~~~~-----~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 233 (408)
-|..+.... +.. .+-| -..|++|...|..+.+ +.++.|+.++-||+. .++..+.+++|++.+
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE----~G~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLE----DGRIQREYRGHTDYV 159 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEec----CCEEEEEEcCCccee
Confidence 998754321 111 1112 2468889888555554 455589999999975 899999999999999
Q ss_pred EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE-
Q 015371 234 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI- 312 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (408)
.++.-......+++|++||++++||.++.++ +..+..........
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~----------------------------------v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKH----------------------------------VSMIEPYKNPNLLRP 205 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccce----------------------------------eEEeccccChhhcCc
Confidence 9999866666799999999999999998443 33333222111110
Q ss_pred -EEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 313 -RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 313 -~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
...|-.+...+..++++|+.- .+.+|+++..++...+. -..+|..+.|..| .+++++..+.|.-|.+...-+
T Consensus 206 ~~g~wigala~~edWlvCGgGp-~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~ 278 (325)
T KOG0649|consen 206 DWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQ 278 (325)
T ss_pred ccCceeEEEeccCceEEecCCC-ceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccEEE
Confidence 111222344467788888654 59999999999888876 3567888888654 678888888899998876433
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=6e-18 Score=142.87 Aligned_cols=251 Identities=14% Similarity=0.174 Sum_probs=160.0
Q ss_pred ccCceeEEEEcCCCCeEEEEe-CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec-CcEEEEEECCC
Q 015371 39 MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGS 116 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~ 116 (408)
+.+....++++|++++|++++ .++.|.+|+++....+...... ........++|+|++++|++++. ++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 346678899999999987764 5788999999743222111111 11124678999999999988764 78999999964
Q ss_pred Ccee--eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCccee-------eecCcCCCc
Q 015371 117 SARE--SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSL-------RIPAHKSDV 186 (408)
Q Consensus 117 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-------~~~~~~~~v 186 (408)
.... ....... ......++++|+++++++++. ++.|.+||+.+...+. ... .....
T Consensus 112 ~g~~~~~~~~~~~-------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p 177 (330)
T PRK11028 112 DGIPVAPIQIIEG-------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGP 177 (330)
T ss_pred CCCCCCceeeccC-------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCC
Confidence 3211 1111110 113677889999998876654 6999999997633221 111 23456
Q ss_pred eEEEEecCCCCEEEEecC-CCeEEEEeccccccCCccceeeecc------cCCeEEEEecCCCCeEEEeec-CCeEEEEe
Q 015371 187 NTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDGRYFISNGK-DQTTKLWD 258 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd 258 (408)
..+.|+ +++++++++.. ++.|.+|+++......+.+..+..+ ......+.++|++++++++.. ++.|.+|+
T Consensus 178 ~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 178 RHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred ceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 789999 88888888776 8999999985211111222222211 112335889999999888754 68899999
Q ss_pred CCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEE
Q 015371 259 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVY 337 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~ 337 (408)
+..... . ..+.++.... .......++|+|++|+++.. ++.|.
T Consensus 257 i~~~~~---------------------------------~-~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 257 VSEDGS---------------------------------V-LSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred EeCCCC---------------------------------e-EEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEE
Confidence 865210 0 1111111000 12233478899999998776 88999
Q ss_pred EEECC
Q 015371 338 IYDLV 342 (408)
Q Consensus 338 vwd~~ 342 (408)
+|++.
T Consensus 300 v~~~~ 304 (330)
T PRK11028 300 VYEID 304 (330)
T ss_pred EEEEc
Confidence 99874
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.5e-19 Score=157.10 Aligned_cols=235 Identities=19% Similarity=0.194 Sum_probs=162.6
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADG 137 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (408)
+..|.+||.+... ..... .+...+.+.+|+|||+.|+.++.+ ..|++||+.+++...+.....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt---~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---------- 248 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN---RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---------- 248 (429)
T ss_pred eEEEEEECCCCCC-ceEec---cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----------
Confidence 4689999987653 22222 234478999999999999987654 379999998876543332221
Q ss_pred CCCccceEEEEEcCCCCEEEEEe-cCCeE--EEEECCCCcceeeecCcCCCceEEEEecCCCCEEEE-ecCCCeEEEEec
Q 015371 138 DEDEFGIFSVKFSTDGQELVAAG-SDNFI--YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS-GSDDSLCKVWDR 213 (408)
Q Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~-~~~dg~i~iwd~ 213 (408)
....++|+|||+.|+.+. .+|.+ ++||+.+++ ...+..+...+....|+ |+++.|+. +..+|...+|++
T Consensus 249 -----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 249 -----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred -----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEE
Confidence 134689999999888765 57754 555776665 44566677778899999 77876554 446788899987
Q ss_pred cccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 214 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
+. .+.....+ .+.. ....|+|+|++|+..+.++ +.+||+.+...
T Consensus 322 ~~---~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~----------------------------- 365 (429)
T PRK01742 322 SA---SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST----------------------------- 365 (429)
T ss_pred EC---CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-----------------------------
Confidence 52 12222222 3333 4578999999998887765 66699876321
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC--CCCceeEEEccCCCCeeeeeEeCC
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL--VSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
..+.... ...++.|+|||++|+.++.+|.+.+|++ .+++.+..+..|.+.+..++|+|-
T Consensus 366 ------~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 366 ------EVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ------EEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1111110 0134679999999999999998888875 367888889888888999999985
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.7e-18 Score=147.92 Aligned_cols=337 Identities=11% Similarity=0.092 Sum_probs=216.7
Q ss_pred ceeeEecCCccEEEeecCceEE--EEEEecCceeeecccCceeEEEEcCCC---CeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLS--RYLPVNGPWKVDGMNSRVYTSQFSNDG---SFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~--~~~~~~~~~~l~~h~~~v~~~~~s~~~---~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
.+.-.||+|++++.......+. ..........+.+|..++..+.+.|.. .++.+++.||.|++||...+..+...
T Consensus 19 ~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred ecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3456789999987655444433 333344456899999999999998864 46789999999999999988766654
Q ss_pred cccccceeeEEEEEeCC---CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCC-CCCccceEEEEEcCCCC
Q 015371 79 IETKALRWTITDTSLSP---DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADG-DEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 154 (408)
.... ++.++.+.| +...++..+.+..-.+.-...........+...+......+. .++. .-.++.+++.|+
T Consensus 99 ~~~~----~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge 173 (792)
T KOG1963|consen 99 DNNL----PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE 173 (792)
T ss_pred ecCC----ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce
Confidence 4333 244443322 111222222111111111110000001111111110000000 0111 145678888887
Q ss_pred EEEEEecCCeEEEEECCCCcceee----ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLR----IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
+....- +-.+.+|+..++..... -..|...+++.+++ |+++++++|..||.|.+|.--...........+.-|.
T Consensus 174 ~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s-pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 174 FKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS-PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred EEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEec-cccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 666554 55688998877541111 13477779999999 9999999999999999997321112334556677799
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
..|+++.|+++|.+|++|+.++.+.+|.+.+... .-+..
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-----------------------------------qfLPR------ 290 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-----------------------------------QFLPR------ 290 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCCc-----------------------------------ccccc------
Confidence 9999999999999999999999999999988431 11111
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-----------CCCeeeeeEeCCCCeEEeecCCCcEE
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-----------NAPVRDCCWHPIYPMLISSSWDCNIV 379 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~~~dg~v~ 379 (408)
.-..+....+|||+.+.+....|+.|.+....+.+...++.+- .+-.+.++++|.-+.++-.+..|.|.
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ 370 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQ 370 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEE
Confidence 1123344467889999999999999999988776655544432 33467789999777788888999999
Q ss_pred EEeeCCCCC
Q 015371 380 RWEIPGIGE 388 (408)
Q Consensus 380 iw~~~~~~~ 388 (408)
+||+-+...
T Consensus 371 ~ydl~td~~ 379 (792)
T KOG1963|consen 371 FYDLYTDST 379 (792)
T ss_pred EEeccccce
Confidence 999876544
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=2.3e-17 Score=129.17 Aligned_cols=233 Identities=16% Similarity=0.196 Sum_probs=166.6
Q ss_pred eeEecCCccEEEeecCceEEEEE--EecCceeeecccCceeEEEEcCCCCeEEEEeCC--CcEEEEEcCCCeeEEEeccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYL--PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE--SNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~ 81 (408)
...|..|+.++..+..+...-+. +..+......-...|.-+-||. .++|..+.+ +.+++.++..+..+....-.
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp 87 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP 87 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecC
Confidence 45577788888877766653332 2222112222233466666764 466665544 45899998877655544322
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
. +|.++.++ .++|+++-.+ .|.|||+.+.+........ +.+...+.++.+++.+.+++.-+.
T Consensus 88 t----~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~-----------~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 88 T----SILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETT-----------PPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred C----ceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhcc-----------CCCccceEeeccCCCCceEEecCC
Confidence 2 69889886 4456666544 4999999887653222211 112225777777777778886533
Q ss_pred --CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCe-EEEEeccccccCCccceeeecc--cCCeEEE
Q 015371 162 --DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL-CKVWDRRCFISKGRANGVLMGH--LEGITFI 236 (408)
Q Consensus 162 --dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~ 236 (408)
.|.|.+||..+-+....+..|++++-+++|+ ++|.+||++++.|+ |||+.+ +.++.+..++.- ...|.++
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v----~~G~kl~eFRRG~~~~~IySL 224 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSV----PEGQKLYEFRRGTYPVSIYSL 224 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEc----CCccEeeeeeCCceeeEEEEE
Confidence 6899999999999999999999999999999 99999999999997 789996 477777777643 3467899
Q ss_pred EecCCCCeEEEeecCCeEEEEeCCCCc
Q 015371 237 DSRRDGRYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d~~i~iwd~~~~~ 263 (408)
+|+|++++|++.+..++|++|.+....
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999999999999999999998755
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=6.5e-19 Score=139.28 Aligned_cols=283 Identities=16% Similarity=0.158 Sum_probs=187.4
Q ss_pred eeEecCCcc-EEEeecCceEEEEEEe---cCc---------eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcC--
Q 015371 6 EVNYSGRGR-FSAADSCHVLSRYLPV---NGP---------WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD-- 70 (408)
Q Consensus 6 ~~~~s~dg~-~~~~~~~~~~~~~~~~---~~~---------~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~-- 70 (408)
++.|-+++. ++++++.+.-.+.|.. ... -.|..|...|+++.|+|+|.+||+|+.+|.|.+|...
T Consensus 18 s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 18 SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred EEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 345555555 7777776655444432 211 2577899999999999999999999999999999876
Q ss_pred ------C-----CeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCC
Q 015371 71 ------K-----NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDE 139 (408)
Q Consensus 71 ------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (408)
+ .+.-.......+|...|..++|+|++.++++++.|..+++||+..+...... . +
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~--~------------d 163 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL--D------------D 163 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec--c------------c
Confidence 2 1112222334557778999999999999999999999999999988764332 2 2
Q ss_pred CccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec--------C-----------c----CCCceEEEEecCCC
Q 015371 140 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--------A-----------H----KSDVNTVCFADETG 196 (408)
Q Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~-----------~----~~~v~~l~~~~~~~ 196 (408)
|...+..++|.|-++++++-+.|...+.+.+...+.+.... . | ......++|+ |++
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT-PdG 242 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT-PDG 242 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC-CCC
Confidence 33468999999999999998888866666654332221110 0 1 1234567888 888
Q ss_pred CEEEEecC----CC-----eEEEEeccccccCCccceeeecccCCeEEEEecC------------------CCCeEEEee
Q 015371 197 HLIFSGSD----DS-----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR------------------DGRYFISNG 249 (408)
Q Consensus 197 ~~l~~~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~ 249 (408)
.++++.+. .+ ..++|+-. ...++...+.....+...+.++| -+-.++.++
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRK---DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeeccc---cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 88887543 22 23445422 23444555555555555555554 122344444
Q ss_pred cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE
Q 015371 250 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 329 (408)
Q Consensus 250 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 329 (408)
.+.|.+||.+.. .++..... .....+...+|++||.+++.
T Consensus 320 -~~svyvydtq~~----------------------------------~P~~~v~n-----ihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 320 -KNSVYVYDTQTL----------------------------------EPLAVVDN-----IHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred -cceEEEeccccc----------------------------------cceEEEee-----eeeeeecceeecCCCcEEEE
Confidence 457999998762 22222211 11234567789999999999
Q ss_pred eeCCCeEEEEECCCCce
Q 015371 330 GSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 330 ~~~dg~i~vwd~~~~~~ 346 (408)
.+.||...+-.++..++
T Consensus 360 SS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eccCCceEEEEEcchhc
Confidence 99999988877766544
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.6e-20 Score=146.08 Aligned_cols=203 Identities=23% Similarity=0.215 Sum_probs=154.9
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce
Q 015371 145 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 224 (408)
Q Consensus 145 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 224 (408)
.+++|+.+|..+++++.||.+++|+..+...+.....|...|.+|.|+ |++++|++-+.| ..+||+.+ .+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 689999999999999999999999998888888888899999999999 999999999999 99999976 443333
Q ss_pred eee--cccCCeEEEEecCCC-----CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCc
Q 015371 225 VLM--GHLEGITFIDSRRDG-----RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 297 (408)
Q Consensus 225 ~~~--~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
... ........+.|+.|+ ..++....-+.|+.||+........ .+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~----------------------------l~ 273 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF----------------------------LR 273 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc----------------------------cc
Confidence 332 223345667777766 2333334456677777655221100 00
Q ss_pred ceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE-ccCCCCeeeeeEeCCCCeEEeecCCC
Q 015371 298 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDC 376 (408)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg 376 (408)
.-.... ....+.+++.|+||+++|.|+.||.|-|++..+.+.++.. +.|...|+.+.|+|+.+++++.+.|.
T Consensus 274 ~~~~~~-------~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 274 LRKKIK-------RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhhhh-------ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 000111 1123456688999999999999999999999998887776 57999999999999999999999999
Q ss_pred cEEEEeeCCCCC
Q 015371 377 NIVRWEIPGIGE 388 (408)
Q Consensus 377 ~v~iw~~~~~~~ 388 (408)
...+..+.....
T Consensus 347 ~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 347 EAAVTKLAVDKT 358 (398)
T ss_pred ceeEEEEeeccc
Confidence 999999877433
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=3.3e-19 Score=134.80 Aligned_cols=209 Identities=17% Similarity=0.263 Sum_probs=160.5
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc---cccceeeEEEEEeCC--CCceEEEeecCcEEEEE
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE---TKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w 112 (408)
.+-+.|.|+.|.|++..||+-. |..|.+|+++.+..+..... ..++....++-+|+| +++.+++.+ |++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEE
Confidence 4567999999999999999876 77899999998766322221 223445688889999 788888764 8899999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEecCCeEEEEECCC-CcceeeecCcCCCceEEE
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 190 (408)
|+.+.... ..+. +.|...+..+.|+|+.+ +|++|+.||.|++||.+. ..++..+.+|...|.++.
T Consensus 199 D~RT~~~~--~sI~-----------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 199 DLRTMKKN--NSIE-----------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred Eccchhhh--cchh-----------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 99876542 1111 12333699999999766 577888899999999975 457888999999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccc-------------------------cCCccceeeecccCCeEEEEecCCCC-e
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFI-------------------------SKGRANGVLMGHLEGITFIDSRRDGR-Y 244 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 244 (408)
|+|...+++++|+.|..|.+|...... -....+.++..|...|.+++|+.-.. .
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 998889999999999999999753111 11123446778999999999987544 6
Q ss_pred EEEeecCCeEEEEeCCC
Q 015371 245 FISNGKDQTTKLWDIRK 261 (408)
Q Consensus 245 l~~~~~d~~i~iwd~~~ 261 (408)
|++-+.||.+.|=.+..
T Consensus 346 FASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVPR 362 (370)
T ss_pred EEEeccCceEEeecCCh
Confidence 78889999998876543
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=9.3e-19 Score=134.25 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=178.6
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCc-eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSA-RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 165 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 165 (408)
+|+|.+|++|...+|++..+..+.||.....+ -+....+..|.. .|+.+.|+|..+.|++++.|..-
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~------------~vtgvdWap~snrIvtcs~drna 79 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK------------IVTGVDWAPKSNRIVTCSHDRNA 79 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc------------ceeEEeecCCCCceeEccCCCCc
Confidence 89999999999999999999999999988776 444555554444 79999999999999999999999
Q ss_pred EEEEC-CCC--cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 166 YVYDL-QAN--KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 166 ~i~d~-~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
++|.. ..+ ++...+..+....+++.|+ |.++.|++|+.-..|.||-+.....=-...+.-+.+...|++++|+|++
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 99998 433 3445566789999999999 8899999999999999998642111111122334567889999999999
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
-+|++|+.|+..+++..--..... ......|. -..+.+..+..+.... ..+....|+|
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vde----kpap~pWg------------sk~PFG~lm~E~~~~g------gwvh~v~fs~ 216 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDE----KPAPTPWG------------SKMPFGQLMSEASSSG------GWVHGVLFSP 216 (361)
T ss_pred ceecccccCcceeEEEEeeecccc----CCCCCCCc------------cCCcHHHHHHhhccCC------CceeeeEeCC
Confidence 999999999999998643211100 00111111 0111223333332222 3445567889
Q ss_pred CCcEEEEeeCCCeEEEEECCCCc-eeEEEccCCCCeeeeeEeCCCCeEEeecCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWD 375 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (408)
+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+. .++.++.|
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 99999999999999999987664 344444334677777775543 33344444
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=161.43 Aligned_cols=282 Identities=15% Similarity=0.239 Sum_probs=206.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..|.||.+.|+|+.|...|.++++|+.|..++||..++..++. ...+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3577999999999999999999999999999999988875554 5677888999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee----c-CcCCCceE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----P-AHKSDVNT 188 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~~~~v~~ 188 (408)
+..+... ..+..|.+ .|++++|+|-. +.+.||++++||.+ ...+... . ....-+.+
T Consensus 261 l~~~~pv--svLrghtg------------avtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 261 LPDGAPV--SVLRGHTG------------AVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred cCCCchH--HHHhcccc------------ceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceee
Confidence 9888653 33445544 89999999954 66789999999987 1111111 1 12345666
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCccc
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
+.|. .++.-+++++.|+.-..|.+... ..+...+.-+..+.+. .+.+++-.+-.+++|++-+
T Consensus 322 ~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~------ 384 (1113)
T KOG0644|consen 322 ILFE-NNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT------ 384 (1113)
T ss_pred eecc-ccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeeccc------
Confidence 7776 78888999999999988885411 1111222222222222 3556666677889999877
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC-CcEEEEeeCCCeEEEEECCCCce
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
+.....+.+|.....++ .++|- .....+++.||...|||+-.|-+
T Consensus 385 ----------------------------g~l~H~l~ghsd~~yvL------d~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 385 ----------------------------GQLLHNLMGHSDEVYVL------DVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ----------------------------chhhhhhcccccceeee------eecCCCcHhhhhccCCCceEeeecccCCc
Confidence 44455555665444333 44443 34556888999999999999988
Q ss_pred eEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 347 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++.+......+.+.+||++|..++....-|.++|.....++.
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 777654455677789999999999888889999987655433
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=146.71 Aligned_cols=265 Identities=13% Similarity=0.134 Sum_probs=181.4
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-------CCceEEEeecCcEEE
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-------DQRFLVYASICAIVN 110 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~ 110 (408)
.|...|.|+.|+.+...+.+++++ .+.+|.--+............. -.+.+..-+ ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCc-eEEEeecccchhhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEE
Confidence 567778899999888777766655 5555543332222211111110 011111111 235788888999998
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
+.+-... . ...+..| ...+.+-.|+|||.-|++++.||.|++|.- +|-...++.....+|.|++
T Consensus 89 il~k~~r-V--E~sv~AH------------~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 89 ILNKSAR-V--ERSISAH------------AAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred Eecccch-h--hhhhhhh------------hhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence 8765332 1 2223333 447999999999999999999999999984 5655666666778999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
|.|...+.+++.+. .+.|=.+. ....+..+++|.+-|.++.|++..+++++|++|-..++||-..
T Consensus 153 W~p~S~~vl~c~g~--h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G--------- 217 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGG--HISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG--------- 217 (737)
T ss_pred ECCCCCceEEecCC--eEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC---------
Confidence 99666666766553 45554432 4455667889999999999999999999999999999999764
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
..+..-..|. ..+.+++|.|+ +.++.++.+ +++ --
T Consensus 218 --------------------------~~Lf~S~~~e------y~ITSva~npd-~~~~v~S~n-t~R-----------~~ 252 (737)
T KOG1524|consen 218 --------------------------ANLFTSAAEE------YAITSVAFNPE-KDYLLWSYN-TAR-----------FS 252 (737)
T ss_pred --------------------------cccccCChhc------cceeeeeeccc-cceeeeeee-eee-----------ec
Confidence 4455445555 23445578887 666666543 233 11
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
+...+.|..++||+||..++.|+..|.+.+=
T Consensus 253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 2346789999999999999999999987653
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-19 Score=144.53 Aligned_cols=198 Identities=19% Similarity=0.215 Sum_probs=146.5
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
.+++|+++|..|++|+.||++|||++.+...+. ....|...|.++.|+|||++|++.+.| ..+||+.+++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999999999999999999999987664443 445566689999999999999999999 8999999988432222
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCC---CEEEEE--ecCCeEEEEECCCCcc-----eeeecCcCCCceEEEEec
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDG---QELVAA--GSDNFIYVYDLQANKC-----SLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~--~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~l~~~~ 193 (408)
..... ......+.|+.|+ .+.+.+ ...+.|..|++..... ..+.......|++|+.+
T Consensus 224 t~~~k------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS- 290 (398)
T KOG0771|consen 224 TPFSK------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS- 290 (398)
T ss_pred CCccc------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-
Confidence 21111 1146677887766 333333 3345677766543221 11112234579999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.++++++.|+.||.|-+++.. .-......-+.|..-|+.+.|+|+.+++++.+.|.+..+..+.-
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~---~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAK---SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCCcEEEEeccCCcEEEEEec---eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999964 22233334467999999999999999999999999988887765
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.2e-18 Score=152.21 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=191.9
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCceeeecc------cCceeEEEEcC--CCCeEEEEeCCCcEEEEEcCCC---
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGM------NSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKN--- 72 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h------~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~--- 72 (408)
.+.+.|+|=...+++........+++-+....|.+. ...|+.+.+-. |..++.+|+.||.|+||+--..
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 456677776665655554444556665555555543 35688888865 4578999999999999984322
Q ss_pred --eeEEEeccccc----ceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEE
Q 015371 73 --WKIQKDIETKA----LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS 146 (408)
Q Consensus 73 --~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (408)
+.+.......+ ..+.=.-+.|.....+|++++.-..|+|||...+........... ..|++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-------------t~vTa 1213 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-------------TLVTA 1213 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-------------cccee
Confidence 11111111111 111113467877777777777788999999987765332222211 13666
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEECCCCc---ceeeecCcCCC--ceEEEEecCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 147 VKFST-DGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 147 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
+.-+. .|+.+++|..||.|++||.+... .+...+.|... |..+.+.+..-.-|++|+.||.|++||+|.. ..
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~~ 1291 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--SK 1291 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC--cc
Confidence 65433 47899999999999999987543 45566778877 9999998423335999999999999999842 23
Q ss_pred ccceeeeccc--C-CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCc
Q 015371 221 RANGVLMGHL--E-GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 297 (408)
Q Consensus 221 ~~~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
.....+..|. + ..+++..+++...+++|+. +.|+||++.....
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l--------------------------------- 1337 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL--------------------------------- 1337 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh---------------------------------
Confidence 3333333333 3 5999999999999999998 9999999876322
Q ss_pred ceeeeecccc-eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 298 SLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 298 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
..++.+.. .........+++|+|..-++|+|+.|.+|.||.....+
T Consensus 1338 --~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 --NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred --cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11111110 01111222556788888999999999999999876543
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=2.4e-20 Score=160.37 Aligned_cols=246 Identities=20% Similarity=0.287 Sum_probs=188.2
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
...+|...|.|+.|...|.++++|+.|..++||..++... .....+|.+ .|+.++.+.+...++++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~------------ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSG------------DITDLAVSSNNTMIAAA 250 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCcc------------ccchhccchhhhhhhhc
Confidence 3456777899999999999999999999999999887755 444444444 89999999999999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
+.|..|++|.+..+.++..+.+|++.|++++|+ |.. +.+.||++++||.|-......+...-.....-+.++.+.
T Consensus 251 S~D~vIrvWrl~~~~pvsvLrghtgavtaiafs-P~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS-PRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred ccCceEEEEecCCCchHHHHhccccceeeeccC-ccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 999999999999999999999999999999999 433 778899999999761100000000001123456777788
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
.++..+++++.|+.-..|.+...... .. ..+|.-.
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~----------------------------------------~~-----~lif~t~ 360 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLAWR----------------------------------------SN-----LLIFVTR 360 (1113)
T ss_pred ccccccccccCCcccccchhhHhhhh----------------------------------------cc-----ceEEEec
Confidence 88889999999999988877652110 00 0011101
Q ss_pred ccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCCCCC
Q 015371 320 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
-+.-..+.+++-.+-.+.+|++.+|...+.+.+|...+..+.++|-.. ...+++.||...|||+-.+.+.
T Consensus 361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 111124666777788899999999999999999999999999999776 5668999999999999876553
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=133.90 Aligned_cols=277 Identities=12% Similarity=0.135 Sum_probs=177.4
Q ss_pred EEeecCceEEEEEEecC---ceeeecccCceeEEEEcC--CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEE
Q 015371 16 SAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (408)
Q Consensus 16 ~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~ 90 (408)
++++-....++++.... ...+++|+..++.+.|.. ....+.+|+.||+|++||++...+............+..+
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence 33333444455554433 457889999999999987 4577899999999999999987665554443333346777
Q ss_pred EEeCCCCceEEEee----cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeE
Q 015371 91 TSLSPDQRFLVYAS----ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFI 165 (408)
Q Consensus 91 ~~~~~~~~~l~~~~----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 165 (408)
++.+..++.+++|. .+-.+.+||++..+...... .+.|...|++++|+| +.+.|++|+.||.|
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------------~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------------NESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------------hhhccCcceeEEecCCCCCeEEeecccceE
Confidence 88877888888875 35689999998765421111 133455799999999 56789999999999
Q ss_pred EEEECCCCc---ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc------------c
Q 015371 166 YVYDLQANK---CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------------L 230 (408)
Q Consensus 166 ~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~ 230 (408)
.++|++... .+...-.|...|.++.|..+.-+.|.+-+...+..+|+++. +.....+... .
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~----~~~~~~~~~~~~~~~d~r~~~~~ 266 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED----GSEETWLENPDVSADDLRKEDNC 266 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC----CChhhcccCccchhhhHHhhhhh
Confidence 999996542 22222347788999999955556799999999999999863 2222222111 0
Q ss_pred CCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccccee
Q 015371 231 EGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 309 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
..+.......++..++.++. -+...++-+....... ..+.+..+.++..
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~----------------------------~~~~~a~l~g~~~-- 316 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS----------------------------LLTEPAILQGGHE-- 316 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeeccccc----------------------------ccCccccccCCcH--
Confidence 11111111223445555444 5556665444211110 1233344444221
Q ss_pred eEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 310 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 310 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
..+.+..|...+.++.+|++||.+.+|..
T Consensus 317 ---eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 317 ---EIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ---HHHHHHhhhcccceeeccCCCceEEEEec
Confidence 11222234456889999999999999985
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1e-17 Score=138.50 Aligned_cols=294 Identities=18% Similarity=0.240 Sum_probs=202.3
Q ss_pred cccCceeEEEEcCCCCeE-EEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCC
Q 015371 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 116 (408)
+|...-+.|..+|||+|+ |+|...-.|++||+..-...... ... ...|.-.-.+.|-..++.-..|.+|.+-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlD--ae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLD--AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-ccc--ccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 678888999999999984 56778889999999764222111 111 11344444555555666666777776543321
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCC
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 196 (408)
.-....... .-.+++++.-..-|+.++....|+-++++.|..+..+....+.++++..+ +..
T Consensus 126 -~hy~~RIP~----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~h 187 (703)
T KOG2321|consen 126 -RHYRTRIPK----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEH 187 (703)
T ss_pred -eeeeeecCc----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-Ccc
Confidence 111111111 24456666544446666667789999999999999998888999999999 778
Q ss_pred CEEEEecCCCeEEEEeccccccCCc--cceeeecccC-----CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGR--ANGVLMGHLE-----GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
.+|++|+.+|.|..||.|.....+. .......|.+ .|+++.|+.+|-.+++|..+|.+.|||++....
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----- 262 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----- 262 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----
Confidence 8999999999999999873211111 1111222333 499999999999999999999999999998321
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (408)
...+.|.....+....|... .+++.+++. ....++|||-.+|+....
T Consensus 263 ------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 263 ------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPMAS 309 (703)
T ss_pred ------------------------------eeecccCCccceeeeccccc--CCCceEEec-chHHhhhcccccCCceee
Confidence 22233433334444444333 224445444 456799999999999988
Q ss_pred EccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCCc
Q 015371 350 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL 391 (408)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 391 (408)
+.. ...++.+++-|++.+++++-.++.+..|=++..++.|.
T Consensus 310 iEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 310 IEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred ccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence 874 44599999999999999999999999998887766543
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=137.24 Aligned_cols=263 Identities=13% Similarity=0.126 Sum_probs=181.3
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..+|.+.|+++.|+.++++|++|+.|..+++|+++..-...... .....+..|...|.|++|...+..+++|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K-------PI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK-------PIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC-------CceeccCccccceEEEEEccCCeeEecCC
Confidence 45677899999999999999999999999999986432111100 11122345566899999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecC--cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 161 SDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
.+++|...|+++.+.+..+.. ..+.|..|..+ |..+.|++.+.++.|.+||.|.......++ ...........+.|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEF 202 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeee
Confidence 999999999999887776642 33589999999 568899999999999999988322222222 22234456788889
Q ss_pred cCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 239 RRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 239 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
+|.. .+|++.+..+-+.+||.+........ ..+......-..--.+
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~---------------------------------~~~~~~L~~~~~~~M~ 249 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQ---------------------------------RSMFKGLPQENTEWMG 249 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHh---------------------------------hhccccCcccchhhhh
Confidence 9965 47788888888999999984322111 1111100000000122
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECCCCce-eEEEccCC-------CCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VAKLDFHN-------APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
..|+|+|+.+++--....-.+||+.+..+ +..+. |. ..+.+++|-.|.. +++|+.+=.|++|.++...
T Consensus 250 ~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 250 SLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred eeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCc
Confidence 34777788887766555566778766433 33332 22 2466788876654 9999999999999997643
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=142.09 Aligned_cols=250 Identities=16% Similarity=0.174 Sum_probs=173.0
Q ss_pred EEEEEeCCCCceEEEeecCcEEEEEECCCCcee--eeeeeeeeeeeeeecCCCCCccceEEEEE-----cCCCCEEEEEe
Q 015371 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARE--SLANVTIHKGLDFSADGDEDEFGIFSVKF-----STDGQELVAAG 160 (408)
Q Consensus 88 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~ 160 (408)
+....++-.|++|+..- ...+.+|+...+... .+....... ....|-+| .+++--+++|-
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g------------t~P~cHdfn~~~a~~~g~dllIGf 192 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG------------TSPTCHDFNSFTATPKGLDLLIGF 192 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC------------CCCceecccccccCCCCcceEEee
Confidence 44555566677777654 346888887643211 111000000 01333334 34666788888
Q ss_pred cCCeEEEEECCCCcceeeec----CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccc-------------------
Q 015371 161 SDNFIYVYDLQANKCSLRIP----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI------------------- 217 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------------- 217 (408)
.-|.|.+.|....+..+.+. -.+..|+|+.|-|.+..+++++-.+|.+.+||.....
T Consensus 193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 88999999987643332221 1347899999998888999999999999999853110
Q ss_pred -----cCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 218 -----SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 218 -----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
....++..+.--.+.|...+|+|||++|++.+.||.++|||+.+..
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----------------------------- 323 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----------------------------- 323 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----------------------------
Confidence 0112223333345678999999999999999999999999998722
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCC-------
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI------- 365 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------- 365 (408)
.+..++. ......+++|||||+||++|++|--|.||.+..++.+..-++|+..|+.++|.|-
T Consensus 324 -----Llg~mkS------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~ 392 (636)
T KOG2394|consen 324 -----LLGVMKS------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEW 392 (636)
T ss_pred -----HHHHHHh------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccc
Confidence 1222221 1133445589999999999999999999999999999999999999999999830
Q ss_pred ----------------------------C-------------CeEEeecCCCcEEEEeeCCCCCCC
Q 015371 366 ----------------------------Y-------------PMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 366 ----------------------------~-------------~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
+ -.+.+.+.|-.+.+||+......+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 393 NNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 1 146778899999999998755444
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=4.6e-19 Score=142.57 Aligned_cols=271 Identities=18% Similarity=0.249 Sum_probs=204.8
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCce
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (408)
.-.-+.+.++.+|+.|+.|+..|.+..+|+.+......+. ... .|.++.|..+.+++|++- ...+.|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~E---tv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VME---TVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhh---hhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence 3446778999999999999999999999999985554433 333 699999999999888774 67899999876655
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 199 (408)
-++.. +. .|..+.|.|..-+|++++..|.+.--|+.+|+.+..+....+.+..|+-+ |-+-.+
T Consensus 204 HClk~---~~-------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVi 266 (545)
T KOG1272|consen 204 HCLKR---HI-------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVI 266 (545)
T ss_pred eehhh---cC-------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-CccceE
Confidence 44333 22 48899999999899999999999999999999999998888999999999 777789
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
-+|..+|+|.+|... ...++..+..|.++|.++++.++|++++|.+.|..++|||+++...
T Consensus 267 h~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------------- 327 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------------- 327 (545)
T ss_pred EEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---------------
Confidence 999999999999954 7788888889999999999999999999999999999999998431
Q ss_pred eeecccccceeeccCCCcceeeeec-ccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC-CC--ceeEEEccC--
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-SG--AQVAKLDFH-- 353 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~--~~~~~~~~~-- 353 (408)
+.++.. +. ....++|..| +||.+ ....|.+|.-. .+ ..-..+-.|
T Consensus 328 -------------------l~t~~tp~~--------a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~ 378 (545)
T KOG1272|consen 328 -------------------LHTYRTPHP--------ASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRC 378 (545)
T ss_pred -------------------cceeecCCC--------cccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhcc
Confidence 111111 11 1122344333 34444 44569999532 21 111122223
Q ss_pred CCCeeeeeEeCCCCeEEeecCCCcEEE
Q 015371 354 NAPVRDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
.++|.++.|.|-...|-.|..-|.-.|
T Consensus 379 ~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 379 GGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred CcccccceeccHHHeeeccccCCceeE
Confidence 458999999998777776665554433
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=6.4e-17 Score=140.27 Aligned_cols=237 Identities=17% Similarity=0.192 Sum_probs=158.3
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec---CcEEEEEECCCCceeeeeeeeeeeeeeeecCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTIHKGLDFSADGD 138 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
..|.+||.+..... .... +...+.+.+|+|||+.|+..+. +..+.+|++.+++...+.....
T Consensus 179 ~~l~~~d~dg~~~~-~lt~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------- 243 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------- 243 (429)
T ss_pred eeEEEEcCCCCCCE-Eeec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence 36888988765332 2222 2336899999999999987642 3579999998876544333222
Q ss_pred CCccceEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC-CCeEEEEecc
Q 015371 139 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDRR 214 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~iwd~~ 214 (408)
....+.|+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+ |+++.|+..+. ++...+|.++
T Consensus 244 ----~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 ----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred ----CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEEEE
Confidence 24468999999988865 3344 59999998876543 44445577889999 78887766554 4555666443
Q ss_pred ccccCCccceeeecccCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
...+ ....+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 318 --~~~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~---------------------------- 366 (429)
T PRK03629 318 --INGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---------------------------- 366 (429)
T ss_pred --CCCC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----------------------------
Confidence 1122 233344344456678899999998876553 357888887622
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCe---EEEEECCCCceeEEEccCCCCeeeeeEeCC
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS---VYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
...+.... ....+.|+|||++|+.++.++. ++++++ +++....+..|.+.+...+|+|-
T Consensus 367 -------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 367 -------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 11111110 1135679999999999988764 677787 56667778888889999999983
No 211
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.81 E-value=6.8e-18 Score=130.92 Aligned_cols=270 Identities=17% Similarity=0.273 Sum_probs=179.1
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee----EEEecccc----------cceeeEEEEEeCCCC--ceEEEe
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK----IQKDIETK----------ALRWTITDTSLSPDQ--RFLVYA 103 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~----------~~~~~v~~~~~~~~~--~~l~~~ 103 (408)
.+-|.++.|...|.+||||..+|.|.++.-+.... .......+ .....|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46699999999999999999999999998543321 11111111 123468899999865 456677
Q ss_pred ecCcEEEEEECCCCceee------------------eeeeeeeee----eeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 104 SICAIVNIVDVGSSARES------------------LANVTIHKG----LDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~------------------~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
+.|.+|++|.+.....+. +.....+.. ..-......|..-|.++.++.|.+.++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 789999999986544322 000000000 011112356788899999999999888875
Q ss_pred CCeEEEEECCCCcceee---ecC-----cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCc------------
Q 015371 162 DNFIYVYDLQANKCSLR---IPA-----HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR------------ 221 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~---~~~-----~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------ 221 (408)
|=.|.+|+++--..... ++. -..-|++..|+|...+.++-.+..|+|++.|+|....-..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 77899999864332222 222 2345889999988889999999999999999983211111
Q ss_pred cceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee
Q 015371 222 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 301 (408)
Q Consensus 222 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
...-+.+--..|..+.|+++|+++++-.. -+|++||++... +++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~---------------------------------~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA---------------------------------KPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---------------------------------CcceE
Confidence 11112233456788999999999987643 479999997632 44444
Q ss_pred eeccccee---------eEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 302 YKGHSVLR---------TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 302 ~~~~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
+..|.... .++---|..+|+.++.++++|+....+++|++..|
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 44443211 11112344568888999999999999999996544
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.8e-17 Score=126.26 Aligned_cols=316 Identities=12% Similarity=0.105 Sum_probs=188.2
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCC-ceEEEeecCcEEEEEECCCCc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~ 118 (408)
+-.+.-++|++.-..+|++..|-.|++|+-... ....+ .. .....|++++|-|.+ ..|++|+. +-|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~L-ks-~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKL-KS-VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCcee-cc-hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 345778899987777889999999999996652 22222 11 123379999999954 56666665 458899875432
Q ss_pred eeee--eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 119 RESL--ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
.... .....+....+ ...+| .+|++++|.+||..+++++. |..|.|||..++..+.......+.++-+.|+ |+
T Consensus 174 n~~r~~~~~s~~~~qvl--~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-Pd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVL--QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-PD 249 (445)
T ss_pred ccccccccccccchhhe--eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-CC
Confidence 1110 00011111111 11222 58999999999999999876 6789999999988776654556788999999 99
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
+++|++++-|+..++|... ......... -..+.|....|+|+|++|+.... |.-++|.+.-.........
T Consensus 250 gd~lfaAt~davfrlw~e~---q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~----- 319 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQEN---QSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR----- 319 (445)
T ss_pred CCEEEEecccceeeeehhc---ccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC-----
Confidence 9999999999999999642 122222222 23458999999999997665543 3445555443221111100
Q ss_pred cccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC--------eEEEEECCCCcee
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--------SVYIYDLVSGAQV 347 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------~i~vwd~~~~~~~ 347 (408)
.-+.. ..+...+-..+....+ ...+...+-+++|.|.|.+||+.-..+ .|.+||.+..-.+
T Consensus 320 ~~~~k--------~~lliaDL~e~ti~ag---~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 320 PQSIK--------RVLLIADLQEVTICAG---QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred cccce--------eeeeeccchhhhhhcC---cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 00000 0000000011111111 111222334557888899999876543 3677887654333
Q ss_pred EEEc-c--CCCCeeeeeEeC---CCCeEEeecCCCcEEEEeeC
Q 015371 348 AKLD-F--HNAPVRDCCWHP---IYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 348 ~~~~-~--~~~~v~~~~~~~---~~~~l~s~~~dg~v~iw~~~ 384 (408)
.... + .......++|+| ++.+|..+=..|.+.-|.+.
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2221 1 112244566665 44566666677888887764
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.81 E-value=6.5e-16 Score=129.86 Aligned_cols=308 Identities=15% Similarity=0.130 Sum_probs=182.4
Q ss_pred CeE-EEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 53 SFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 53 ~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
+++ ++-..++.|.+.|..+.+.+..+..... .-..+.|+||++++++++.||.|.++|+.+.+.. ..+....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~~G~-- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIKVGG-- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE-SS--
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEecCC--
Confidence 344 4556789999999998866665544332 2344779999999999999999999999998753 3333332
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeecCc-------CCCceEEEEecCCCCEEEEec
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAH-------KSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~~~~ 203 (408)
....+++++||+++++++ ..+.+.++|.++.+.+..+... ...+..+..+|....++++.-
T Consensus 79 -----------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 79 -----------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp -----------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -----------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 377899999999999886 4899999999999988877532 346677877744444666666
Q ss_pred CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCCCcCcccccccccccc------
Q 015371 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYD------ 276 (408)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~------ 276 (408)
+.+.|-+.|... ...................|+|++++++++ ..++.|-++|..+...............
T Consensus 148 d~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 148 DTGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp TTTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred cCCeEEEEEecc---ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 668888888642 122222333344567788999999987664 4567899999887544322111111000
Q ss_pred --------ccceee------ccccccee-eccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe----eCCCeEE
Q 015371 277 --------WDYRWM------EYPSYARR-LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG----SSDNSVY 337 (408)
Q Consensus 277 --------~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~ 337 (408)
|..... ........ ......+.+..+...... ..+..+|+++++.+. ...+.|.
T Consensus 225 php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~~v~ 297 (369)
T PF02239_consen 225 PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDADTVQ 297 (369)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCceEE
Confidence 111100 00000011 112223344444433221 122468899999988 4458899
Q ss_pred EEECCCCceeEEEccC-CCCeeeeeEeCCCCeEEeecC--CCcEEEEeeCCCCC
Q 015371 338 IYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISSSW--DCNIVRWEIPGIGE 388 (408)
Q Consensus 338 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~--dg~v~iw~~~~~~~ 388 (408)
++|.++.+.+.++... ...+..+.|+++|+.+..+.. ++.|.+||..+.++
T Consensus 298 viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 298 VIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp EEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred EEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 9999999888887532 235899999999996555443 34799999988655
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.5e-18 Score=127.63 Aligned_cols=277 Identities=13% Similarity=0.123 Sum_probs=175.9
Q ss_pred eeEecCCccEEEeecCceEEEEEEecC---ceeee-cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
++.|-.+++ +.++....+...|..+. ...++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+.-+..
T Consensus 19 s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---- 92 (323)
T KOG0322|consen 19 SVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---- 92 (323)
T ss_pred ehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE----
Confidence 444555565 44444444444444333 33455 56788999999997 5688889999999999987533221
Q ss_pred ccceeeEEEEEeCCC-----Cc----eEEEeecCc-EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC
Q 015371 82 KALRWTITDTSLSPD-----QR----FLVYASICA-IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST 151 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~-----~~----~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (408)
|.-.++++.|.+. ++ .++.-+... .+.+-|...... .... ..........+.+..+..
T Consensus 93 --~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq--v~i~--------dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 93 --HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ--VQIA--------DDSERSKLGSVMCQDKDH 160 (323)
T ss_pred --eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce--eEcc--------CchhccccCceeeeeccc
Confidence 1113445555432 11 111111100 011111111100 0000 000112233566766543
Q ss_pred -CCC--EEEEEecCCeEEEEECCCCcc----------eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc
Q 015371 152 -DGQ--ELVAAGSDNFIYVYDLQANKC----------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 218 (408)
Q Consensus 152 -~~~--~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (408)
++. ++++|.++|.+.+||+.++.. ......|..+|.++.|. +.-+.=++|+.+..+..|.+.....
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccC
Confidence 333 566778899999999998733 33345699999999998 5555567788888999999863322
Q ss_pred CCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcc
Q 015371 219 KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 298 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
.........-..-.|..+...||++.+++++.|+.|++|..++ ..+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt----------------------------------l~p 285 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT----------------------------------LNP 285 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc----------------------------------CCc
Confidence 3333333444456788999999999999999999999999998 567
Q ss_pred eeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
+..++.|.. .+.+++|+|+..++|.++.|++|.+|++
T Consensus 286 LAVLkyHsa------gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSA------GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhc------ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 788888873 3445589999999999999999999986
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=3.1e-15 Score=115.15 Aligned_cols=279 Identities=16% Similarity=0.223 Sum_probs=176.3
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEE-eecC------cEEEEEECC
Q 015371 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY-ASIC------AIVNIVDVG 115 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~~w~~~ 115 (408)
...++|+.|..-+++|..+| .+||+.+.-++........+. -.+.-|-| -.++|+. |+.+ ..+.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G-~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG-FKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc-hhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 44599999999999998877 999998753221111111110 12222333 3445553 3322 369999944
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC-CCcceeeecCcC--CCceEEEEe
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRIPAHK--SDVNTVCFA 192 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~--~~v~~l~~~ 192 (408)
.... +..+.... +|.++.+.++ +|++.- .+.|+||... +.+.+..+.... ....+++-.
T Consensus 84 k~~~--i~el~f~~-------------~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 84 KERC--IIELSFNS-------------EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred cCcE--EEEEEecc-------------ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 3333 22222222 5999999765 466554 6889999987 455555554322 233333322
Q ss_pred cCCCCEEEE-ecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe-EEEEeCCCCcCcccccc
Q 015371 193 DETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 193 ~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~ 270 (408)
.+..+|+. |-.-|.|+|-|+.. ........+.+|.+.|.+++.+.+|..++++|..|+ |||||..+
T Consensus 146 -~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--------- 213 (346)
T KOG2111|consen 146 -SNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED--------- 213 (346)
T ss_pred -CCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC---------
Confidence 23334443 45579999999862 122245788999999999999999999999999998 89999988
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee---
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV--- 347 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--- 347 (408)
+..+..+..-... ..+++++|||++.+||++++.|+|+||.++....-
T Consensus 214 -------------------------g~~l~E~RRG~d~----A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~ 264 (346)
T KOG2111|consen 214 -------------------------GTLLQELRRGVDR----ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDE 264 (346)
T ss_pred -------------------------CcEeeeeecCCch----heEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccc
Confidence 4555555432211 34567789999999999999999999998653211
Q ss_pred ---------------------EEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 348 ---------------------AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 348 ---------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
..++-..+...-++|-.+.+.++..+.||.-+-+.+.
T Consensus 265 ~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 265 SSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred cccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 1111123344556666665556666677776655553
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.4e-16 Score=122.45 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=149.8
Q ss_pred eeeEecCCccEEEeecCceEEEEEEe--cCceeeec-ccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeE-----
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPV--NGPWKVDG-MNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKI----- 75 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~l~~-h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~----- 75 (408)
|-++|.+.=--++....+.+.+.... ..+..|+. -...|+|++|-|.+ +-|+.|...| |.||..+.....
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR 180 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc
Confidence 44566652222333333444444332 23344443 34679999999964 6788888765 999987542111
Q ss_pred ------EEecccccceeeEEEEEeCCCCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEE
Q 015371 76 ------QKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVK 148 (408)
Q Consensus 76 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 148 (408)
.......+| .+|++|.|.+||..+++++. +..|.|||.+++....+.... .. .+.-+.
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lg-------------g~slLk 245 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LG-------------GFSLLK 245 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CC-------------ceeeEE
Confidence 112233444 48999999999999998875 568999999998776554221 11 588999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCE-EEEecCCCeEEEEeccccccCCcc-----
Q 015371 149 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL-IFSGSDDSLCKVWDRRCFISKGRA----- 222 (408)
Q Consensus 149 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~----- 222 (408)
|+||+.+|++++-|+..++|+..............+.|...+|+ |.|.+ |++.+..- ++|.+.........
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs-pcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS-PCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec-CCCCEEEEEEcCCc--eEEEEeecCCCccccCccc
Confidence 99999999999999999999654433222333345699999999 55554 44544433 34443211100000
Q ss_pred ------ceee-----ec----ccCCeEEEEecCCCCeEEEeecCCe--------EEEEeCCC
Q 015371 223 ------NGVL-----MG----HLEGITFIDSRRDGRYFISNGKDQT--------TKLWDIRK 261 (408)
Q Consensus 223 ------~~~~-----~~----~~~~i~~~~~~~~~~~l~~~~~d~~--------i~iwd~~~ 261 (408)
+..+ .. -.+.+.+++|.|.|.+|++.-..+. |.+||.+.
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 0000 01 2467889999999999998765433 66677665
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=6.2e-17 Score=140.79 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=145.0
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCc
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAH 182 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~ 182 (408)
+..|.+||........ +..+. ..+.+.+|+|||+.|+.++.+ ..|++||+.+++... +...
T Consensus 183 ~~~i~i~d~dg~~~~~---lt~~~------------~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~ 246 (429)
T PRK01742 183 PYEVRVADYDGFNQFI---VNRSS------------QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASF 246 (429)
T ss_pred eEEEEEECCCCCCceE---eccCC------------CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecC
Confidence 4689999987654322 11222 258899999999999987654 479999998875422 2222
Q ss_pred CCCceEEEEecCCCCEEEEe-cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCC
Q 015371 183 KSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIR 260 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 260 (408)
.+....++|+ |+++.|+.+ +.+|.+.||.++ . .......+..+...+....|+|||+.|+..+ .++...+|+++
T Consensus 247 ~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d--~-~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 247 RGHNGAPAFS-PDGSRLAFASSKDGVLNIYVMG--A-NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CCccCceeEC-CCCCEEEEEEecCCcEEEEEEE--C-CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 2334578999 888877765 468877776543 1 2233455666777788999999999877655 57888888865
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
... .....+ .+. . +.+.|+|||++|+..+.++ +.+||
T Consensus 323 ~~~---------------------------------~~~~~l-~~~------~--~~~~~SpDG~~ia~~~~~~-i~~~D 359 (429)
T PRK01742 323 ASG---------------------------------GGASLV-GGR------G--YSAQISADGKTLVMINGDN-VVKQD 359 (429)
T ss_pred CCC---------------------------------CCeEEe-cCC------C--CCccCCCCCCEEEEEcCCC-EEEEE
Confidence 411 111111 111 0 2457999999998887765 56699
Q ss_pred CCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 341 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+.+++.......+ ....+.|+|+|++|+.++.+|.+.+|.+.
T Consensus 360 l~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 360 LTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 9888754333222 34578899999999999999988888763
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.4e-18 Score=138.09 Aligned_cols=243 Identities=16% Similarity=0.221 Sum_probs=164.8
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQEL 156 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l 156 (408)
....+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.. ..+. .+|...|.++.|-| +.+.+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~-----------TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSIS-----------TGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeee-----------cccccceeEEeeeccCCCeEE
Confidence 456788999999999999999999999999999998744432 2211 24555799999999 56788
Q ss_pred EEEecCCeEEEEECCC----------CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC------
Q 015371 157 VAAGSDNFIYVYDLQA----------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG------ 220 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------ 220 (408)
++|..|..|+++|+.. .+....+..|...|..++-.|...+.+.++++||+|+-+|+|......
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 9999999999999974 233445577999999999996666999999999999999998421111
Q ss_pred ccceeeecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce
Q 015371 221 RANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 299 (408)
Q Consensus 221 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
..+..+....-...++.++|.. .+|++|+.|-..++||.+............. ..++ ....++
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~---------~~pp-------~~~~cv 254 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN---------TCPP-------KDCRCV 254 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc---------CCCC-------cccchh
Confidence 1111122223446788889854 5789999999999999765222111100000 0000 001112
Q ss_pred eeeec-c-----cceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 300 ATYKG-H-----SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 300 ~~~~~-~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
..+.. | ........++....|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 255 ~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 255 RYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred heecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 22111 1 112233345666789999988888777778999999887765544
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=2.3e-18 Score=138.65 Aligned_cols=231 Identities=17% Similarity=0.175 Sum_probs=188.6
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
....+.++.+|++|+.++..|.+..+|+.+......... .. .|.++.|-.+.+++|++ ....++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--~E-------------tv~Dv~~LHneq~~AVA-QK~y~y 194 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--ME-------------TVRDVTFLHNEQFFAVA-QKKYVY 194 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh--hh-------------hhhhhhhhcchHHHHhh-hhceEE
Confidence 456789999999999999999999999999877444332 22 48899999988888877 467899
Q ss_pred EEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEE
Q 015371 167 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI 246 (408)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 246 (408)
|||- .|..+..++.| ..|..+.|. |..-+|++++..|.++.-|+ +.++.+..+..-.+.+..+.-+|-...+-
T Consensus 195 vYD~-~GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DV----S~GklVa~~~t~~G~~~vm~qNP~NaVih 267 (545)
T KOG1272|consen 195 VYDN-NGTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDV----STGKLVASIRTGAGRTDVMKQNPYNAVIH 267 (545)
T ss_pred EecC-CCcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEee----chhhhhHHHHccCCccchhhcCCccceEE
Confidence 9995 46667777754 678999999 88889999999999999996 48899988888889999999999999999
Q ss_pred EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 247 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+|...|+|.+|.... ..++..+-.|... +.++++.++|+|
T Consensus 268 ~GhsnGtVSlWSP~s----------------------------------kePLvKiLcH~g~------V~siAv~~~G~Y 307 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNS----------------------------------KEPLVKILCHRGP------VSSIAVDRGGRY 307 (545)
T ss_pred EcCCCceEEecCCCC----------------------------------cchHHHHHhcCCC------cceEEECCCCcE
Confidence 999999999999876 4556666666633 344478899999
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+++.+.|..++|||++....+.++.. .-+...+++|..| +++++....|.||.=
T Consensus 308 MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 308 MATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred EeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 99999999999999999887777764 4567788998766 444555668999953
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.1e-16 Score=134.86 Aligned_cols=237 Identities=18% Similarity=0.242 Sum_probs=151.7
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADGD 138 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
..|.++|.+.. ....... +...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+.... +
T Consensus 176 ~~L~~~D~dG~-~~~~l~~---~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~---g-------- 240 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALS---SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK---G-------- 240 (427)
T ss_pred cEEEEECCCCC-CceEecc---CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC---C--------
Confidence 35667776433 2222222 23368899999999999887643 46999999887654332221 1
Q ss_pred CCccceEEEEEcCCCCEEEE-EecCCe--EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCCeEEEEecc
Q 015371 139 EDEFGIFSVKFSTDGQELVA-AGSDNF--IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRR 214 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~iwd~~ 214 (408)
......|+|||+.|+. .+.+|. |+++|+.++. ...+..+........|+ |+++.|+..+ .+|...+|.++
T Consensus 241 ----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 241 ----SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred ----CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEEE
Confidence 3567899999998875 556665 4445555554 44555555666788999 7888776554 45677777654
Q ss_pred ccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC---eEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
. ..+. ...+..+........|+|+|++|+..+.++ .|.+||+.+..
T Consensus 315 ~--~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---------------------------- 363 (427)
T PRK02889 315 A--SGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ---------------------------- 363 (427)
T ss_pred C--CCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC----------------------------
Confidence 1 1222 222222233345678999999998777654 59999987622
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC---eEEEEECCCCceeEEEccCCCCeeeeeEeCC
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
...+.... ....+.|+|||+.|+..+.++ .+++.++ +++....+..+.+.+...+|+|-
T Consensus 364 -------~~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 -------VTALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -------eEEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 11111111 113467999999998887654 3666676 56666677667788888999884
No 221
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.2e-15 Score=123.01 Aligned_cols=313 Identities=15% Similarity=0.187 Sum_probs=198.6
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEE-----eC-----CCcEEEEEcCCCee
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAA-----SQ-----ESNIKVYNVDKNWK 74 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~-----~~-----dg~i~iw~~~~~~~ 74 (408)
+..++|++|++.+......++-+-.......+.-....++++.|||.|.+|.|= .. .-.+.+|+++++..
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~ 117 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQ 117 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeecccee
Confidence 467889999998887777665554443334444444489999999999999862 11 23577999988533
Q ss_pred EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
...+ ...... -.+..|++|..+.+ --..+.+.+|++...+.. ...+ + ...|..+.++|.+.
T Consensus 118 ~s~~-q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~-~~kl--~------------~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 118 RSQI-QKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI-QHKL--S------------VSGITMLSLSPGPE 178 (566)
T ss_pred hhhe-ehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccce-eeee--e------------ccceeeEEecCCCC
Confidence 3222 222222 14788998876443 223568999999774321 1111 1 11588888888633
Q ss_pred --EEEE-----EecCCeEEEEECCCCcceeeec---CcCCCceEEEEecCCCCEEEEecC-----------CCeEEEEec
Q 015371 155 --ELVA-----AGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETGHLIFSGSD-----------DSLCKVWDR 213 (408)
Q Consensus 155 --~l~~-----~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~~~~~-----------dg~i~iwd~ 213 (408)
.+++ .+.-+.|+||.+........+. -....=..+.|++....+|+.++. ..++++.++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 3332 2445689999886332221111 112233456777333334333322 235777775
Q ss_pred cccccCCccceeeecccCCeEEEEecCCCCeEEE--eecCCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 214 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS--NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
. +.....-....++|.++.|+|+++-+++ |-.--.+.|||++-
T Consensus 259 ~-----g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------------------------------ 303 (566)
T KOG2315|consen 259 Q-----GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------------------------------ 303 (566)
T ss_pred c-----CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------------------------------
Confidence 2 3333333335799999999999987655 44567899999875
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC---CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCe
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (408)
.++..+..... . .+-|+|.|++|+.++- .|.+-|||+.+.+++..+.... -+-+.|+|||++
T Consensus 304 -----~~v~df~egpR--N------~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 304 -----KPVFDFPEGPR--N------TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEY 368 (566)
T ss_pred -----CEeEeCCCCCc--c------ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcE
Confidence 44444432221 1 1137778999998776 4889999999999998887543 345799999999
Q ss_pred EEeecC------CCcEEEEeeCCC
Q 015371 369 LISSSW------DCNIVRWEIPGI 386 (408)
Q Consensus 369 l~s~~~------dg~v~iw~~~~~ 386 (408)
++|++. |+.++||++.+.
T Consensus 369 flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEeccccEEecCCeEEEEecCc
Confidence 988764 789999999764
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.1e-15 Score=117.47 Aligned_cols=240 Identities=14% Similarity=0.176 Sum_probs=160.8
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE-EEecC---
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSD--- 162 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d--- 162 (408)
...+++|+.|...+++|..+| .+||+.+.-+.......... + ..+..+-|- .++|+ +|+.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-G-----------~~~veMLfR--~N~laLVGGg~~pk 71 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-G-----------FKIVEMLFR--SNYLALVGGGSRPK 71 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-c-----------hhhhhHhhh--hceEEEecCCCCCC
Confidence 355599999999999887666 88999875332111111100 0 123333332 22333 33332
Q ss_pred ---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc--CCeEEEE
Q 015371 163 ---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--EGITFID 237 (408)
Q Consensus 163 ---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~i~~~~ 237 (408)
..|.|||-....++.++. ...+|.++.+. .+.|++.- .+.|.||... ...+.+..+.... ....+++
T Consensus 72 y~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~---r~riVvvl-~~~I~VytF~---~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKERCIIELS-FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFP---DNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred CCCceEEEEecccCcEEEEEE-eccceeeEEEc---CCeEEEEe-cCeEEEEEcC---CChhheeeeecccCCCceEeec
Confidence 579999977777777776 57899999997 34455544 5689999864 2344444444322 2344444
Q ss_pred ecCCCCeEEEe-ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 238 SRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 238 ~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
-..+..+|+.- -.-|.|+|-|+..... .....+..|.....++
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~--------------------------------~~p~~I~AH~s~Iacv---- 187 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKP--------------------------------NAPSIINAHDSDIACV---- 187 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCc--------------------------------CCceEEEcccCceeEE----
Confidence 33344455543 3468999999987321 1235667777554444
Q ss_pred eccccCCCcEEEEeeCCCe-EEEEECCCCceeEEEccC--CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 317 SPEYSTAQKYIYTGSSDNS-VYIYDLVSGAQVAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
+..-+|..+|+++..|+ |||||..+|+.+++++.- ...|.+++|||++.+|+.+|.-|+|+|+.+....
T Consensus 188 --~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 188 --ALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred --EEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 56678999999999998 899999999999999632 4579999999999999999999999999997743
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=9.8e-16 Score=133.63 Aligned_cols=234 Identities=21% Similarity=0.210 Sum_probs=152.3
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADGD 138 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
..|.+||.+.. ....+.. +...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+.... +
T Consensus 184 ~~l~i~D~~g~-~~~~lt~---~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~---g-------- 248 (433)
T PRK04922 184 YALQVADSDGY-NPQTILR---SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR---G-------- 248 (433)
T ss_pred EEEEEECCCCC-CceEeec---CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC---C--------
Confidence 46889998654 2232222 23368899999999999987643 47999999877654332221 1
Q ss_pred CCccceEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCCe--EEEEe
Q 015371 139 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL--CKVWD 212 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~--i~iwd 212 (408)
...+..|+|||+.|+.. +.+| .|++||+.+++. ..+..+.......+|+ ++++.|+..+ .+|. |.++|
T Consensus 249 ----~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 249 ----INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred ----CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEE
Confidence 24578999999987644 4444 699999988764 4455555566788999 7888777655 4555 55555
Q ss_pred ccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC---eEEEEeCCCCcCccccccccccccccceeecccccce
Q 015371 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 289 (408)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
+. .+. ...+..+......++|+|+|++|+..+.++ .|.+||+.+..
T Consensus 323 l~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-------------------------- 371 (433)
T PRK04922 323 AS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-------------------------- 371 (433)
T ss_pred CC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC--------------------------
Confidence 42 222 222322334455789999999988765443 58999987622
Q ss_pred eeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC---CeEEEEECCCCceeEEEccCCCCeeeeeEeC
Q 015371 290 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 364 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (408)
...+.... ....+.|+|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 372 ---------~~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 372 ---------VRTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---------eEECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 11111110 01245789999988877663 468888884 555666666667788889987
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=6.2e-16 Score=139.05 Aligned_cols=265 Identities=13% Similarity=0.154 Sum_probs=167.7
Q ss_pred ccccceeeEEEEEeCCCC-ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 80 ETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
..+.|...+..++.++.. .++++|+.||+|++|+...-.... ... .....+.. ....+.++...+.+..+|+
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~--rS~ltys~----~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA--RSELTYSP----EGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-cee--eeeEEEec----cCCceEEEEeccCCCeEEE
Confidence 345566678888887755 999999999999999986533221 000 00011111 1236899999999999999
Q ss_pred EecCCeEEEEECCCCcc-------eeeecC-cCCCc-eEEEEecCCCC-EEEEecCCCeEEEEeccccccCCccceeeec
Q 015371 159 AGSDNFIYVYDLQANKC-------SLRIPA-HKSDV-NTVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMG 228 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~-------~~~~~~-~~~~v-~~l~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 228 (408)
++.||.|.+.++..... ...... ..+.+ ..-+|...... .++.+...+.|..||+|. ...........
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM--RHDAWRLKNQL 1193 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh--hhhHHhhhcCc
Confidence 99999999999875211 111111 12333 33345433444 788888999999999873 22222233334
Q ss_pred ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccce
Q 015371 229 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 308 (408)
Q Consensus 229 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
..+.|++++.+|.+.+++.|...|.+.+||+|=. .++..+.... .
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----------------------------------~~i~sw~~P~-~ 1238 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----------------------------------VPILSWEHPA-R 1238 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecC----------------------------------ceeecccCcc-c
Confidence 5678999999999999999999999999999862 2222222111 1
Q ss_pred eeEEEEEeeccccCCCcEEEEee--CCCeEEEEECCCCceeEEEccC-------------------CCCeeeeeEeCCCC
Q 015371 309 RTLIRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFH-------------------NAPVRDCCWHPIYP 367 (408)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~ 367 (408)
........++ +.+.....++++ ..+.|.+|++.+|.+...+... .-......+...+.
T Consensus 1239 ~~i~~v~~~~-~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~ 1317 (1431)
T KOG1240|consen 1239 APIRHVWLCP-TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG 1317 (1431)
T ss_pred CCcceEEeec-cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc
Confidence 1111222222 223234444443 4678999999998766665422 11122233444456
Q ss_pred eEEeecCCCcEEEEeeCCCCCC
Q 015371 368 MLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 368 ~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
.+.+|+.|..|+.||.......
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecCCccceeeccCCCcccc
Confidence 8999999999999999775443
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7.3e-16 Score=119.17 Aligned_cols=304 Identities=13% Similarity=0.173 Sum_probs=166.4
Q ss_pred eeeEecCCccEEEeec----CceEEEEEEecCceeeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 5 REVNYSGRGRFSAADS----CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~----~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
..+-|+.|..+....- ...+|.+...+=...+......+.++.|||||+ .|.+...+-.|.+|.+.+.......
T Consensus 52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~- 130 (447)
T KOG4497|consen 52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP- 130 (447)
T ss_pred hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-
Confidence 3466777777655432 223333333333346777788899999999995 5556777889999999886544322
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc-eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA-RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
.. ...+..++|+|||++.+.++.-......++...+ -..+..+.. .....+.+.|+|||..|++
T Consensus 131 -~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~------------dT~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 131 -HP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKL------------DTIDLTGIEWSPDGNWLAV 195 (447)
T ss_pred -cc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCC------------CcccccCceECCCCcEEEE
Confidence 22 2257889999999998877643111011110000 000000000 0112444555555544443
Q ss_pred Eec--CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc----------------------
Q 015371 159 AGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR---------------------- 214 (408)
Q Consensus 159 ~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~---------------------- 214 (408)
-.. +-.|+.|. ..-.+..++|+ |.+++|++|+.|+.+|+.+--
T Consensus 196 wd~~Leykv~aYe------------~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 196 WDNVLEYKVYAYE------------RGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred ecchhhheeeeee------------eccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 211 11111111 11234445555 445555555555555543300
Q ss_pred -------------------------------------c---cccCCccceeeecccCCeEEEEecCCCCeEEEeec--CC
Q 015371 215 -------------------------------------C---FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK--DQ 252 (408)
Q Consensus 215 -------------------------------------~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~ 252 (408)
. .....++........-.+.-++|++|..++++-.. -+
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pn 342 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPN 342 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCc
Confidence 0 00000111111223445677899999998888653 35
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 332 (408)
.+-+||+++.+... .+.... .+....|+|....|+.+..
T Consensus 343 alW~Wdlq~l~l~a----------------------------------vLiQk~-------piraf~WdP~~prL~vctg 381 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHA----------------------------------VLIQKH-------PIRAFEWDPGRPRLVVCTG 381 (447)
T ss_pred eEEEEechhhhhhh----------------------------------hhhhcc-------ceeEEEeCCCCceEEEEcC
Confidence 69999998733211 111110 1112246666778888888
Q ss_pred CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEE
Q 015371 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379 (408)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~ 379 (408)
...+++|.......+ ......-.|..++|+.+|..++-.+.|....
T Consensus 382 ~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 382 KSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred CceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 888999987543333 3333446799999999999999999996543
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=5.5e-15 Score=129.16 Aligned_cols=234 Identities=15% Similarity=0.188 Sum_probs=152.0
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec---CcEEEEEECCCCceeeeeeeeeeeeeeeecCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTIHKGLDFSADGD 138 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
..|.+||.+... ..... .+...+.+.+|+|||+.|+..+. +..|.+||+.+++...+... .+
T Consensus 182 ~~l~~~d~dg~~-~~~lt---~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~---~g-------- 246 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLT---DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF---PG-------- 246 (435)
T ss_pred eEEEEECCCCCC-cEEEe---cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC---CC--------
Confidence 378888876542 22222 23347999999999999988764 46899999988765433221 11
Q ss_pred CCccceEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCC--eEEEEe
Q 015371 139 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWD 212 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~iwd 212 (408)
.+....|+|||+.|+.. +.++ .|++||+.+++. ..+..+........|+ |+++.|+..+ .+| .|.++|
T Consensus 247 ----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 ----MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ----cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEEEE
Confidence 36678999999987644 4444 588889987764 4455566667789999 7888777665 344 577777
Q ss_pred ccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCccccccccccccccceeecccccce
Q 015371 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 289 (408)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
+. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+....
T Consensus 321 ~~-----g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-------------------------- 369 (435)
T PRK05137 321 AD-----GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-------------------------- 369 (435)
T ss_pred CC-----CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--------------------------
Confidence 53 22333444445566778899999999876653 357778865411
Q ss_pred eeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC------CeEEEEECCCCceeEEEccCCCCeeeeeEe
Q 015371 290 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD------NSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 363 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (408)
...+.... ....+.|+|||+.|+..+.+ ..++++|+..++. ..+. ..+.+...+|+
T Consensus 370 ---------~~~lt~~~-------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Ws 431 (435)
T PRK05137 370 ---------ERILTSGF-------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWS 431 (435)
T ss_pred ---------eEeccCCC-------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccC
Confidence 11111100 12456799999998776543 3688888865544 4454 34457788888
Q ss_pred CC
Q 015371 364 PI 365 (408)
Q Consensus 364 ~~ 365 (408)
|-
T Consensus 432 p~ 433 (435)
T PRK05137 432 PL 433 (435)
T ss_pred CC
Confidence 74
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=1.2e-14 Score=122.18 Aligned_cols=288 Identities=15% Similarity=0.155 Sum_probs=173.3
Q ss_pred eeEecCCccEEEeecCceEEEEEEecCceeeec--ccCceeEEEEcCCCCeEEEEe-CCCcEEEEEcCCCeeEEEecccc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDG--MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
.+.++|||+++...+.+.....++......+.. -......+++|+||++++++. .++.+.++|.++.+.+.......
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 467899999887777666667777666543331 234467899999999998775 57899999999887766543321
Q ss_pred c----ceeeEEEEEeCCCCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 83 A----LRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 83 ~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
. ....+.++..+|....+++.-. .+.|.+.|....+......+.... ......|+|++++++
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~-------------~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR-------------FPHDGGFDPDGRYFL 187 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T-------------TEEEEEE-TTSSEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc-------------cccccccCcccceee
Confidence 1 2346788888888885655544 588888887766433333332222 377899999999887
Q ss_pred EE-ecCCeEEEEECCCCcceeeec----CcCCCceEEEEecCC---------CCEEEEecCCCeEEEEeccccccCCccc
Q 015371 158 AA-GSDNFIYVYDLQANKCSLRIP----AHKSDVNTVCFADET---------GHLIFSGSDDSLCKVWDRRCFISKGRAN 223 (408)
Q Consensus 158 ~~-~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~~---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 223 (408)
++ ..+..|-++|.++++.+..+. .|..+...+- +|.. +...++.-....+.+||. ...+.+
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~----~~wkvv 262 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDD----YAWKVV 262 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STT----TBTSEE
T ss_pred ecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeeccccceecccccCCccccchh----hcCeEE
Confidence 75 447799999999987766552 2444444332 2111 122212222234455664 367778
Q ss_pred eeeecccCCeEEEEecCCCCeEEEe----ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce
Q 015371 224 GVLMGHLEGITFIDSRRDGRYFISN----GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 299 (408)
Q Consensus 224 ~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
..+.....+ ..+..+|+++++.+. ...+.|.++|.++.+ .+
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----------------------------------~~ 307 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----------------------------------VV 307 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----------------------------------EE
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc----------------------------------ee
Confidence 888877666 888899999999987 445789999998832 12
Q ss_pred eeeecccceeeEEEEEeeccccCCCcEEEEeeCC--CeEEEEECCCCceeEEEc
Q 015371 300 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD--NSVYIYDLVSGAQVAKLD 351 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 351 (408)
..+..... ..+..+.|+++|+++..+..+ +.|.+||..+.+.+.++.
T Consensus 308 ~~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 308 KTITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp E-HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 22211111 114456899999977766553 479999999999988886
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.74 E-value=1.7e-16 Score=123.24 Aligned_cols=214 Identities=16% Similarity=0.230 Sum_probs=152.1
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..++||.+.|++...-|...-+++.+.|.+++||--.+..+....+.. .-..+++++.+.++...|+++-.+|++.-+.
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 468899999999999998888999999999999975544333222221 2233799999999999999999999988877
Q ss_pred CCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-------------------------------
Q 015371 114 VGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------------------------------- 160 (408)
Q Consensus 114 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------------------- 160 (408)
+...- .........|. ..+..+-|+...+++++.+
T Consensus 97 ~sedfnkm~~~r~~~~h~------------~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQ------------ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFD 164 (404)
T ss_pred hhhhhhhcchhhhhhhhh------------cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCcee
Confidence 64321 11111111221 1333333333333333333
Q ss_pred --------cCCeEEEEEC--CCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 161 --------SDNFIYVYDL--QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 161 --------~dg~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
..|.|.+..+ ..-.++.++.+|.+.+.+++|. +...++++|..|..+.+||+- ........+.+|.
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~ 240 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHN 240 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEecc---CCcceeeeeccch
Confidence 2333333332 2234556678999999999999 888899999999999999984 3455666788999
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
..|..+...+--+.+.+++.||.|.+||++....
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999999888888999999999999999987443
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.7e-15 Score=129.37 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=136.2
Q ss_pred cCceeeecccCceeEEEEcCCCCeEEEEe---CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecC
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAAS---QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SIC 106 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 106 (408)
...+.+..+...+.+.+|||||+.||..+ .+..|++|++.+++.. ......+ .+..+.|+|||+.|+.. +.+
T Consensus 189 ~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~---~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 189 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR---HNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCC---CcCCeEECCCCCEEEEEEcCC
Confidence 34566777788899999999999998754 2457999999876432 2222233 34568999999988865 334
Q ss_pred c--EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-C--eEEEEECCCCcceeeecC
Q 015371 107 A--IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-N--FIYVYDLQANKCSLRIPA 181 (408)
Q Consensus 107 g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~ 181 (408)
| .|.+||+.+++...+.. .. ..+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..
T Consensus 265 g~~~I~~~d~~tg~~~~lt~---~~------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~ 328 (429)
T PRK03629 265 GSLNLYVMDLASGQIRQVTD---GR------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW 328 (429)
T ss_pred CCcEEEEEECCCCCEEEccC---CC------------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence 4 58889998775433221 11 136788999999988877654 3 566667776654 33433
Q ss_pred cCCCceEEEEecCCCCEEEEecCC---CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe---EE
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT---TK 255 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~ 255 (408)
+........|+ |++++|+..+.+ ..|.+||+. .+. ...+... .......|+|||+.|+..+.++. +.
T Consensus 329 ~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 329 EGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred CCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 44456778999 888887765543 357888864 222 2233321 22346789999999999888764 66
Q ss_pred EEeCCC
Q 015371 256 LWDIRK 261 (408)
Q Consensus 256 iwd~~~ 261 (408)
++++..
T Consensus 402 ~~~~~G 407 (429)
T PRK03629 402 LVSTDG 407 (429)
T ss_pred EEECCC
Confidence 666643
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=130.79 Aligned_cols=210 Identities=18% Similarity=0.261 Sum_probs=150.2
Q ss_pred cCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc--ccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeee
Q 015371 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIET--KALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANV 125 (408)
Q Consensus 49 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (408)
.|++--|..|-.-|.|.+.|.... .+.++... .-....|+++.|-|. ...++++-.+|.+.++|............
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 345666888888899999886552 22211111 112347999999994 45566677899999998642211000000
Q ss_pred ---------eeeeee-----eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 126 ---------TIHKGL-----DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 126 ---------~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
..+... .......--...|...+|+|||++||+.+.||.++|+|..+.+++..++..-+...|++|
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 000000 000000011237889999999999999999999999999999988888877889999999
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-------------------------------
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR------------------------------- 240 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------- 240 (408)
+ ||+++|++|++|.-|.||.+. ..+.+..-.+|...|..++|.|
T Consensus 341 S-PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~ 415 (636)
T KOG2394|consen 341 S-PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG 415 (636)
T ss_pred c-CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence 9 999999999999999999964 7888888999999999999983
Q ss_pred ----CC-------------CeEEEeecCCeEEEEeCCCCcC
Q 015371 241 ----DG-------------RYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 241 ----~~-------------~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
++ -.|.+.+.|-.+.+||+.....
T Consensus 416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 01 1367788899999999987443
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.72 E-value=7e-15 Score=111.99 Aligned_cols=277 Identities=18% Similarity=0.168 Sum_probs=177.4
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC---CCc-eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQR-FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSAD 136 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (408)
-|.+.+|++.+.+..............+..|.|.- ++. .++-+-..|.|.++......... .+..-.......
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~--~L~~ls~~ki~~- 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV--HLRGLSSKKISV- 121 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee--eecccchhhhhh-
Confidence 46788999887644431111122233577777753 455 56667788999999775433211 111111110000
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcce--eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 137 GDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
....++.|++.+..++++..+|.+.+-+....... +..+.|+.++....|+..+.+++++|+.|+.+..||+|
T Consensus 122 -----~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 122 -----VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred -----eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 02567889999999999999999987666555433 37789999999999998888999999999999999998
Q ss_pred ccccCCccceeeecccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.+..-.....+-|...|.+|.-+| .+.++++|+.|..|++||.|+....
T Consensus 197 --~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---------------------------- 246 (339)
T KOG0280|consen 197 --IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---------------------------- 246 (339)
T ss_pred --CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----------------------------
Confidence 233333333667899999998876 4679999999999999999974322
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC--c---eeEEEccCCCCeeeeeEeCCCCe
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG--A---QVAKLDFHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~---~~~~~~~~~~~v~~~~~~~~~~~ 368 (408)
+..-... ..+.+..+.|... +.+++++-.+| .+|-+...+ + .....+.|.+-+..-.|......
T Consensus 247 -----l~~~~v~---GGVWRi~~~p~~~--~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~ 315 (339)
T KOG0280|consen 247 -----LFKAKVG---GGVWRIKHHPEIF--HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSF 315 (339)
T ss_pred -----cccCccc---cceEEEEecchhh--hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccce
Confidence 1111100 1222222332211 34455555555 666666554 2 23344677777888888665567
Q ss_pred EEeec-CCCcEE-EEeeCCC
Q 015371 369 LISSS-WDCNIV-RWEIPGI 386 (408)
Q Consensus 369 l~s~~-~dg~v~-iw~~~~~ 386 (408)
|+|++ .|..++ +|-.-++
T Consensus 316 lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 316 LATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeeeccccceeeeeeeccC
Confidence 88865 577755 7865443
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.3e-15 Score=120.29 Aligned_cols=268 Identities=13% Similarity=0.117 Sum_probs=183.0
Q ss_pred ccCceeEEEEcCCCC--eEEEEeCCCcEEEEEcCCCeeEEEe---cccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 39 MNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKNWKIQKD---IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 39 h~~~v~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
-...|..++|.-|++ .|...+.|..+....+......... ........+|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 346788888877653 4555556667777777655333221 0112223356555553 44677788899999999
Q ss_pred CCCCce--eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE-EEEecC--CeEEEEECCCCcceeeecCc------
Q 015371 114 VGSSAR--ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSD--NFIYVYDLQANKCSLRIPAH------ 182 (408)
Q Consensus 114 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d--g~i~i~d~~~~~~~~~~~~~------ 182 (408)
...+.. .....+.... ++..+.-++....+ ++|+.. ..+.+||++..+.+..-+.-
T Consensus 132 ~k~~d~hss~l~~la~g~-------------g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGP-------------GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG 198 (412)
T ss_pred ccCCccccccceeeecCC-------------ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc
Confidence 985542 1122222221 46677777755555 558888 88999999988665544321
Q ss_pred ---CCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEE
Q 015371 183 ---KSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 257 (408)
Q Consensus 183 ---~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 257 (408)
.-.++++.|. +. ...|++++.-+.+++||.+ ...+++..+.-...+++++...|++++++++..-+.+..+
T Consensus 199 LrVPvW~tdi~Fl-~g~~~~~fat~T~~hqvR~YDt~---~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 199 LRVPVWITDIRFL-EGSPNYKFATITRYHQVRLYDTR---HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred ceeeeeeccceec-CCCCCceEEEEecceeEEEecCc---ccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 1246788888 44 6789999999999999986 4677888888888999999999999999999999999999
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceee-eecccceeeEEEEEeeccccCCCcEEEEeeCCCeE
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT-YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSV 336 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 336 (408)
|++... .+.. +.+... .+.++..+|...++|+++-|..|
T Consensus 275 D~r~~k----------------------------------l~g~~~kg~tG------sirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 275 DLRGGK----------------------------------LLGCGLKGITG------SIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred cccCce----------------------------------eeccccCCccC------CcceEEEcCCCceEEeeccceeE
Confidence 999832 2222 333332 22233456678999999999999
Q ss_pred EEEECCCCceeEEEccCCCCeeeeeEeCCC
Q 015371 337 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIY 366 (408)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (408)
||+|+++.+++.... -...++++-+.++-
T Consensus 315 RIhD~ktrkll~kvY-vKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 315 RIHDIKTRKLLHKVY-VKSRLTFILLRDDV 343 (412)
T ss_pred EEeecccchhhhhhh-hhccccEEEecCCc
Confidence 999999977766553 23456667665543
No 233
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.71 E-value=5.6e-14 Score=115.18 Aligned_cols=316 Identities=16% Similarity=0.179 Sum_probs=200.7
Q ss_pred ceeeEecCCccEEEeecCceEEEE-EEecCceeeecccCceeEEEEcCCCCeEEEEeCCC---------------cEEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRY-LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQES---------------NIKVY 67 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg---------------~i~iw 67 (408)
.+.+.+||.|.++++.....+.-+ -+... ....--...|.-+.|||.++||.+=+..+ .+.+|
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vw 113 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAGVECWGGPSKA-KLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVW 113 (561)
T ss_pred hhheeecCcchheehhhccceEEccccchh-heeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEE
Confidence 456889999999887655444322 22222 22222234599999999999999865433 49999
Q ss_pred EcCCCeeEEEecccccceeeEE-EEEeCCCCceEEEeecCcEEEEEECCCCcee--eeeeeeeeeeeeeecCCCCCccce
Q 015371 68 NVDKNWKIQKDIETKALRWTIT-DTSLSPDQRFLVYASICAIVNIVDVGSSARE--SLANVTIHKGLDFSADGDEDEFGI 144 (408)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i 144 (408)
|+.++..+.......... ... -+.|+.+.+++|-. ....+.++++ +.... ....+. ...|
T Consensus 114 d~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--------------~~gi 176 (561)
T COG5354 114 DIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--------------PVGI 176 (561)
T ss_pred eccCceeEeeccccCCcc-cccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--------------ccce
Confidence 999986665544333321 122 47888888887754 3456899997 33322 111111 1148
Q ss_pred EEEEEcCCC--CEEEE-----EecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-----------CCC
Q 015371 145 FSVKFSTDG--QELVA-----AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-----------DDS 206 (408)
Q Consensus 145 ~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-----------~dg 206 (408)
....|+|.+ ..|+. .+..+.+++|.+..+..+.+-.-....=..+.|. +.++++++-- ...
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccc
Confidence 888888853 33333 2457889999998766555433333334567787 6666655321 124
Q ss_pred eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee--cCCeEEEEeCCCCcCccccccccccccccceeecc
Q 015371 207 LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 284 (408)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
.+.+++++ ...+.......++|...+|.|.++.+++.+ .+..+.++|++.
T Consensus 256 nLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~----------------------- 307 (561)
T COG5354 256 NLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG----------------------- 307 (561)
T ss_pred eEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeeccccc-----------------------
Confidence 67888864 333333336689999999999998776655 678899999886
Q ss_pred cccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC---CeEEEEECCCCceeE-EEccCCCCeeee
Q 015371 285 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVA-KLDFHNAPVRDC 360 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~-~~~~~~~~v~~~ 360 (408)
. +...-......+ +-|||.+++++.++-| |.|-+||......+. .+.+.. .+-+
T Consensus 308 ------------N-l~~~~Pe~~rNT-------~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~ 365 (561)
T COG5354 308 ------------N-LRFYFPEQKRNT-------IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYC 365 (561)
T ss_pred ------------c-eEEecCCccccc-------ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEe
Confidence 1 111111111111 2478889999987765 789999987654443 565433 4457
Q ss_pred eEeCCCCeEEeec------CCCcEEEEeeCCCCC
Q 015371 361 CWHPIYPMLISSS------WDCNIVRWEIPGIGE 388 (408)
Q Consensus 361 ~~~~~~~~l~s~~------~dg~v~iw~~~~~~~ 388 (408)
.|+||++++.+.. .|..|.||++.+..-
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 8999999777653 488999999976543
No 234
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.5e-14 Score=117.53 Aligned_cols=320 Identities=12% Similarity=0.138 Sum_probs=205.0
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCceeee--cccCceeEEEEcCCCCeEEEEeCC-----------CcEEEEEcCC
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD--GMNSRVYTSQFSNDGSFFVAASQE-----------SNIKVYNVDK 71 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~d-----------g~i~iw~~~~ 71 (408)
.-+.|||-|.|+++-....+. +|-...-.++. .|.+ |.-+.|||..+||+|-+.. ..++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~-lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIA-LWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEecccee-eecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 458899999999986665543 33333322222 4555 8889999999999996531 5699999999
Q ss_pred CeeEEEecccc--cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE
Q 015371 72 NWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 72 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (408)
|.....+.... ...+++ ..||.|++++|--.. ..|.||+...........++.. .|....|
T Consensus 292 G~lkrsF~~~~~~~~~WP~--frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~--------------gIr~Fsw 354 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPI--FRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS--------------GIRDFSW 354 (698)
T ss_pred cchhcceeccCCCccccce--EEeccCCceeEEecc-ceEEEEecCceeeecccccCCc--------------cccCccc
Confidence 97666555422 222333 789999999997665 5688998766443322222221 5889999
Q ss_pred cCCCCEEEEEec-----CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEe----------cCCCeEEEEecc
Q 015371 150 STDGQELVAAGS-----DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG----------SDDSLCKVWDRR 214 (408)
Q Consensus 150 ~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~----------~~dg~i~iwd~~ 214 (408)
+|.++.||.=.. -..+.+..+.+++.+++..-+.-.=..|-|- .+|.+|+.- +.-..+.|+.++
T Consensus 355 sP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 355 SPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred CCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 999888876543 2457777887777766655554444456666 677777642 112245666665
Q ss_pred ccccCCccceeeecccCCeEEEEecCCCCeEEEeec---CCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
....++. ...-...|...+|-|.|+.+++.+. ..++.+|.+++....
T Consensus 434 ---eKdIpve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-------------------------- 483 (698)
T KOG2314|consen 434 ---EKDIPVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-------------------------- 483 (698)
T ss_pred ---ccCCCce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc--------------------------
Confidence 2222332 2335678899999999998877654 345788877641111
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee---CCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCe
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (408)
...+..+... .+..+.|+|.|++++.+. ..|.+.++|+........-......-+.+.|.|.|+|
T Consensus 484 ----~~lVk~~dk~--------~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 484 ----PSLVKELDKK--------FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRY 551 (698)
T ss_pred ----hhhhhhhccc--------ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCE
Confidence 1122222221 122335777899998764 4688999998743332222222234677899999999
Q ss_pred EEeecC------CCcEEEEeeCCC
Q 015371 369 LISSSW------DCNIVRWEIPGI 386 (408)
Q Consensus 369 l~s~~~------dg~v~iw~~~~~ 386 (408)
++|++. |.--++|++.+.
T Consensus 552 vvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 552 VVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEeeehhhhccccceEEEEeecH
Confidence 999875 566778888653
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=3.3e-13 Score=114.02 Aligned_cols=287 Identities=16% Similarity=0.146 Sum_probs=172.9
Q ss_pred EEEEeCC----CcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeec----CcEEEEEECCCC--ceeeee
Q 015371 55 FVAASQE----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CAIVNIVDVGSS--ARESLA 123 (408)
Q Consensus 55 l~t~~~d----g~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~w~~~~~--~~~~~~ 123 (408)
+++|+.. +.|++|+++.. ..+..... .........++++|++++|.++.. ++.|..|++... ....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 68999998332 22222221 112225677899999999998876 468999988764 443333
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCC-Ccceee---ec----------CcCCCceE
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA-NKCSLR---IP----------AHKSDVNT 188 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~---~~----------~~~~~v~~ 188 (408)
....... ....++++|++++|+++.. +|.|.++++.. +..... +. .......+
T Consensus 81 ~~~~~g~------------~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 81 SVPSGGS------------SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEESSS------------CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eeccCCC------------CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 3321111 4678999999999999875 89999999976 332222 11 12345678
Q ss_pred EEEecCCCCEEEEec-CCCeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCc
Q 015371 189 VCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSN 265 (408)
Q Consensus 189 l~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~ 265 (408)
+.++ |+++++++.. ....|.+|++............+ ......-..+.|+|+++++.+..+ ++.|.++++......
T Consensus 149 v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 149 VVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 9999 7887776653 34589999975211111111222 234456789999999998766554 778999988731110
Q ss_pred cccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECC--
Q 015371 266 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLV-- 342 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~-- 342 (408)
. ..+..................+.++|||++|+++.. .+.|.+|++.
T Consensus 228 ~------------------------------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 228 L------------------------------TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp E------------------------------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred e------------------------------eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 0 001111110000000012234468899999888764 5789999993
Q ss_pred CC--ceeEEEccCCCCeeeeeEeCCCCeEEeec-CCCcEEEEeeCC
Q 015371 343 SG--AQVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPG 385 (408)
Q Consensus 343 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 385 (408)
++ +.+..+.........++++|+|++|+++. .++.|.+|+++.
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 23 33444444445589999999999888765 567899998853
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.9e-14 Score=124.62 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=141.6
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCCcceeeecCcCC
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKS 184 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~ 184 (408)
.|.++|........+. .+ ...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+
T Consensus 183 ~l~~~d~dg~~~~~lt---~~------------~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g 246 (435)
T PRK05137 183 RLAIMDQDGANVRYLT---DG------------SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG 246 (435)
T ss_pred EEEEECCCCCCcEEEe---cC------------CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC
Confidence 6888887655432221 22 225899999999999888764 468999999888653 4455666
Q ss_pred CceEEEEecCCCCEEE-EecCCCe--EEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec-CC--eEEEEe
Q 015371 185 DVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWD 258 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd 258 (408)
.+...+|+ |+++.|+ +.+.++. |.+||+. . .....+..+........|+|||+.|+..+. +| .|+++|
T Consensus 247 ~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~----~-~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLR----S-GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEEC-CCCCEEEEEEecCCCceEEEEECC----C-CceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 77889999 7777654 5566665 6666753 2 333455556666778899999998887764 33 577777
Q ss_pred CCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC---Ce
Q 015371 259 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NS 335 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~ 335 (408)
+.... ...+.... .....+.|+|||++|+....+ ..
T Consensus 321 ~~g~~-----------------------------------~~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 321 ADGSN-----------------------------------PRRISFGG------GRYSTPVWSPRGDLIAFTKQGGGQFS 359 (435)
T ss_pred CCCCC-----------------------------------eEEeecCC------CcccCeEECCCCCEEEEEEcCCCceE
Confidence 65411 11111111 112245789999999887653 36
Q ss_pred EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCC------CcEEEEeeCCCCCC
Q 015371 336 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD------CNIVRWEIPGIGEA 389 (408)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~v~iw~~~~~~~~ 389 (408)
|.+||+.++.. ..+. ....+..+.|+|||+.|+..+.+ ..+++.++.+....
T Consensus 360 i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 360 IGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred EEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 88899865543 3333 23357789999999987665432 25778888665443
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.5e-16 Score=125.48 Aligned_cols=266 Identities=15% Similarity=0.192 Sum_probs=185.1
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELV 157 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~ 157 (408)
.+..|.+.|..+.|+..|..|++++.|..|.+||+.......... . +|...|....|-| +...++
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-S------------GH~~NvfQaKFiP~s~d~ti~ 203 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-S------------GHCNNVFQAKFIPFSGDRTIV 203 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-c------------ccccchhhhhccCCCCCcCce
Confidence 345677899999999999999999999999999998776532221 1 2333566677777 445789
Q ss_pred EEecCCeEEEEECCC-Ccc--eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC---
Q 015371 158 AAGSDNFIYVYDLQA-NKC--SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--- 231 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--- 231 (408)
+++.||.+++=.+.. +.+ ...+..|.++|..++.-|....-|.+++.|+.+.-+|++......... .-..+..
T Consensus 204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v 282 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERV 282 (559)
T ss_pred eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccce
Confidence 999999999887643 322 234566999999999998888999999999999999998543333333 2222333
Q ss_pred CeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 232 GITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 232 ~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
....++..|... .+++++.|..+++||.+........ ..+..+..+.....
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~d 334 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVED 334 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCcccccc
Confidence 467888888655 8999999999999999874332111 12223322222222
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCC--C----------ceeE-EEccCCC--Ceeeee-EeCCCCeEEeecC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS--G----------AQVA-KLDFHNA--PVRDCC-WHPIYPMLISSSW 374 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~----------~~~~-~~~~~~~--~v~~~~-~~~~~~~l~s~~~ 374 (408)
....+..+.|+.++.-++++-.|-.|+++.-.- | ..+. .+++|.. .|..+- |-|...++++||.
T Consensus 335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 223344556776677777777888899995432 2 1122 3678854 355554 4688889999999
Q ss_pred CCcEEEEeeCCCC
Q 015371 375 DCNIVRWEIPGIG 387 (408)
Q Consensus 375 dg~v~iw~~~~~~ 387 (408)
=|.|.||+-.+++
T Consensus 415 CGhIFiW~K~t~e 427 (559)
T KOG1334|consen 415 CGHIFIWDKKTGE 427 (559)
T ss_pred cceEEEEecchhH
Confidence 9999999977653
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=8.3e-15 Score=111.95 Aligned_cols=151 Identities=11% Similarity=0.223 Sum_probs=105.3
Q ss_pred eEEEEecCCCCEEEEecC----------CCeEEEEeccccccCCccceeee-cccCCeEEEEecCCCCeEEEe--ecCCe
Q 015371 187 NTVCFADETGHLIFSGSD----------DSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFISN--GKDQT 253 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~d~~ 253 (408)
..+.|+ +.|+.|++-.. -+...+|.++. .......+. ...++|..++|+|+|+.|++. ..++.
T Consensus 9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~---~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE---KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEec---CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 457788 66665554332 23456666542 223333333 234579999999999987654 45678
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS- 332 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 332 (408)
+.+||++. +.+..+..... ..+.|||+|++|++++.
T Consensus 85 v~lyd~~~-----------------------------------~~i~~~~~~~~--------n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 85 VTLYDVKG-----------------------------------KKIFSFGTQPR--------NTISWSPDGRFLVLAGFG 121 (194)
T ss_pred cEEEcCcc-----------------------------------cEeEeecCCCc--------eEEEECCCCCEEEEEEcc
Confidence 99999864 34444433221 12368899999999874
Q ss_pred --CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecC------CCcEEEEeeCCC
Q 015371 333 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW------DCNIVRWEIPGI 386 (408)
Q Consensus 333 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~~~~~ 386 (408)
.|.|.+||+++.+.+.+.. |. .++.++|+|+|++|++++. |+.++||++.+.
T Consensus 122 n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 4679999999888888775 33 4789999999999998864 899999999754
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3e-14 Score=123.87 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=128.5
Q ss_pred ceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCCeEEEEecccccc
Q 015371 143 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFIS 218 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~ 218 (408)
.+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+ |+++.|+ +.+.+|...+|.++.
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~--- 271 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA--- 271 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence 58899999999999887643 469999999886543 33344566789999 7777665 567788877777541
Q ss_pred CCccceeeecccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCc
Q 015371 219 KGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 297 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
.+.....+..+........|+|||+.|+..+. +|...+|.+.... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------------------------------g 318 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------------------------------G 318 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---------------------------------C
Confidence 22334455555555677889999998876654 4566666554210 0
Q ss_pred ceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC---eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecC
Q 015371 298 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 374 (408)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (408)
....+.... .....+.|||||++|+..+.++ .|++||+.+++... +.. ........|+|||+.|+.++.
T Consensus 319 ~~~~lt~~g------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 319 AAQRVTFTG------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred ceEEEecCC------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEe
Confidence 011111010 0112457899999999877654 69999998876543 332 233567899999998777665
Q ss_pred CC-c--EEEEeeCC
Q 015371 375 DC-N--IVRWEIPG 385 (408)
Q Consensus 375 dg-~--v~iw~~~~ 385 (408)
++ . +.+-++..
T Consensus 391 ~~g~~~l~~~~~~g 404 (427)
T PRK02889 391 QGGRSVLAAVSSDG 404 (427)
T ss_pred cCCCEEEEEEECCC
Confidence 43 3 44445533
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=6.5e-15 Score=116.49 Aligned_cols=208 Identities=15% Similarity=0.185 Sum_probs=153.7
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe----eEEEecccccceeeEEEEEeCCCCceE-EEeecC--cEEE
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFL-VYASIC--AIVN 110 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--g~i~ 110 (408)
.....|..++.. | ..|++|-.+|.+.+|....+. .+... ... ..+..+.-++....+ ++|+.. ..+.
T Consensus 103 l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g---~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATG---PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceee-ecC---CceeeeccCCCCCceEecCchhccccee
Confidence 344555555554 2 357888889999999988432 11111 111 257777777755555 558888 7899
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCC-cceeeecCcCCCce
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVN 187 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~ 187 (408)
+||+++.+......-.....+. -.-...++++.|.+. ...|++++.-+.+++||.+.+ +++..+.-.+.+++
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~-----LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLG-----LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred eeecccceeeeeccCCCCcccc-----ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 9999887432211111111111 111225788999887 789999999999999999765 56777777789999
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
++... |.++++++|..-|.+..||+| .++.... +.+..+.|.++..+|..+++++++-|..++|+|+.+
T Consensus 252 ~~~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 252 STGLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eeeec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99999 899999999999999999987 5555554 888899999999999999999999999999999988
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.9e-14 Score=123.65 Aligned_cols=217 Identities=16% Similarity=0.099 Sum_probs=139.3
Q ss_pred cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCCcceeeecCcC
Q 015371 107 AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHK 183 (408)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~ 183 (408)
..|.+||........+. .+. ..+.+.+|+|||+.|+..+. ...|++||+.+++.. .+....
T Consensus 184 ~~l~i~D~~g~~~~~lt---~~~------------~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~ 247 (433)
T PRK04922 184 YALQVADSDGYNPQTIL---RSA------------EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFR 247 (433)
T ss_pred EEEEEECCCCCCceEee---cCC------------CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCC
Confidence 36888888655432221 111 25889999999999998764 347999999887653 333344
Q ss_pred CCceEEEEecCCCCEEE-EecCCC--eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec-CCe--EEEE
Q 015371 184 SDVNTVCFADETGHLIF-SGSDDS--LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQT--TKLW 257 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~iw 257 (408)
+...++.|+ |+++.|+ +.+.+| .|.+||+. .+. ...+..+........|+|||+.|+..+. +|. |+++
T Consensus 248 g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~----~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 GINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLG----SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred CCccCceEC-CCCCEEEEEEeCCCCceEEEEECC----CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 555688999 7777654 555555 58888864 332 3445555555677899999998887764 444 5555
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC---
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--- 334 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--- 334 (408)
|+.+.. ...+.... .....++|||||++|+..+.++
T Consensus 322 dl~~g~-----------------------------------~~~lt~~g------~~~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 322 AASGGS-----------------------------------AERLTFQG------NYNARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred ECCCCC-----------------------------------eEEeecCC------CCccCEEECCCCCEEEEEECCCCce
Confidence 654411 11111111 0112457899999998765443
Q ss_pred eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCC---CcEEEEeeCCCCC
Q 015371 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD---CNIVRWEIPGIGE 388 (408)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~~~ 388 (408)
.|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.+...
T Consensus 361 ~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 361 RIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred eEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 6999999887654 343 33345678999999977766543 4577788765433
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.67 E-value=2.1e-13 Score=119.53 Aligned_cols=233 Identities=21% Similarity=0.217 Sum_probs=147.9
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADGD 138 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
..|.++|.+.. ....... +...+...+|+|||++|+.+..+ ..|++||+.+++........ .
T Consensus 170 ~~l~~~d~~g~-~~~~l~~---~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~---~-------- 234 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITR---SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP---G-------- 234 (417)
T ss_pred ceEEEEcCCCC-CCEEeec---CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC---C--------
Confidence 35778887543 2333322 22358889999999999987654 47999999887553332211 1
Q ss_pred CCccceEEEEEcCCCCEEEEE-ecC--CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC-CC--eEEEEe
Q 015371 139 EDEFGIFSVKFSTDGQELVAA-GSD--NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DS--LCKVWD 212 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg--~i~iwd 212 (408)
.+.+++|+|||+.|+.. +.+ ..|++||+.+++. ..+..+........|+ ++++.|+..+. ++ .|.++|
T Consensus 235 ----~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 235 ----MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred ----CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEEE
Confidence 35668999999977654 333 3699999987754 3444455556678899 78877765543 44 466666
Q ss_pred ccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC---eEEEEeCCCCcCccccccccccccccceeecccccce
Q 015371 213 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 289 (408)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
+. .++ ...+..+......+.|+|+|++++.++.++ .|.+||+.+..
T Consensus 309 ~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-------------------------- 357 (417)
T TIGR02800 309 AD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-------------------------- 357 (417)
T ss_pred CC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC--------------------------
Confidence 53 222 334444556677889999999999888775 78888887521
Q ss_pred eeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC---eEEEEECCCCceeEEEccCCCCeeeeeEe
Q 015371 290 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWH 363 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (408)
...+.... ....+.|+|||++|+..+.++ .+++.+. +++....+..+.+.+..++|+
T Consensus 358 ---------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 358 ---------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ---------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 11111111 012357899999888877654 4566664 455556665555566666663
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.4e-13 Score=120.15 Aligned_cols=234 Identities=19% Similarity=0.198 Sum_probs=144.7
Q ss_pred cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCCCC
Q 015371 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADGDE 139 (408)
Q Consensus 63 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (408)
.+.++|.+.... ...... ...+.+..|+|||+.|+..+.+ ..|.+||+.+++...+.....
T Consensus 199 ~l~i~d~dG~~~-~~l~~~---~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRS---PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCCc-eEeecC---CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 566777655422 222222 2368889999999999876543 368888988776543332211
Q ss_pred CccceEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCCe--EEEEec
Q 015371 140 DEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL--CKVWDR 213 (408)
Q Consensus 140 ~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~--i~iwd~ 213 (408)
......|+|||+.|+.. +.+| .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++. |.++|+
T Consensus 263 ---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 263 ---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred ---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEEC
Confidence 23467999999988754 4455 488889987764 3444455567788999 7777665544 3454 445554
Q ss_pred cccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-C--eEEEEeCCCCcCccccccccccccccceeeccccccee
Q 015371 214 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-Q--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 290 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (408)
. .++. ..+...........|+|||++|+..+.+ + .|.++|+.+..
T Consensus 338 ~----~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--------------------------- 385 (448)
T PRK04792 338 A----SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA--------------------------- 385 (448)
T ss_pred C----CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---------------------------
Confidence 2 2322 2222222233457899999988776553 3 35556665521
Q ss_pred eccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-C--eEEEEECCCCceeEEEccCCCCeeeeeEeCC
Q 015371 291 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-N--SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
...+.... ....|.|+|||+.|+..+.+ | .+++++. +++....+..+.+.+...+|+|-
T Consensus 386 --------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 386 --------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred --------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 11111110 11245789999988876654 3 3778886 66667777666677888899873
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=1.9e-14 Score=109.95 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=104.8
Q ss_pred eEEEEcCCCCeEEEEeC----------CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe--ecCcEEEE
Q 015371 44 YTSQFSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNI 111 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~ 111 (408)
..+.|+|+|++|+.-.. -+...+|.++............ ..++|.+++|+|+++.+++. ..++.+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35778888887775432 2345666664432222222222 22369999999999987655 35679999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCCcceeeecCcCCCceE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKSDVNT 188 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~ 188 (408)
||+.... +..+. .. .+..+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..++.
T Consensus 88 yd~~~~~---i~~~~--~~------------~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~ 148 (194)
T PF08662_consen 88 YDVKGKK---IFSFG--TQ------------PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATD 148 (194)
T ss_pred EcCcccE---eEeec--CC------------CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEE
Confidence 9996222 22222 11 5788999999999999875 4679999999888777665 3 34789
Q ss_pred EEEecCCCCEEEEecC------CCeEEEEec
Q 015371 189 VCFADETGHLIFSGSD------DSLCKVWDR 213 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~------dg~i~iwd~ 213 (408)
++|+ |+|++|+++.. |..++||+.
T Consensus 149 ~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 149 VEWS-PDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEc-CCCCEEEEEEeccceeccccEEEEEe
Confidence 9999 99999998874 678899996
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=3.3e-12 Score=100.92 Aligned_cols=282 Identities=17% Similarity=0.122 Sum_probs=178.6
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCC--Cceeeeeeeeeeeeeeeec
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGS--SARESLANVTIHKGLDFSA 135 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~--~~~~~~~~~~~~~~~~~~~ 135 (408)
+.-|++|++++..........-.....++-++|+|+++.|.++..+ |.|..|.++. ++...+.......
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g------ 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG------ 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC------
Confidence 4569999998654333444444455578999999999999988654 6677777764 4443332222211
Q ss_pred CCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCC-Ccceee--ecCcCCC----------ceEEEEecCCCCEEEE
Q 015371 136 DGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA-NKCSLR--IPAHKSD----------VNTVCFADETGHLIFS 201 (408)
Q Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~--~~~~~~~----------v~~l~~~~~~~~~l~~ 201 (408)
.+.+.++++++|++++++.. .|.|.++-++. |.+... ...|.+. +....+. |++++|++
T Consensus 89 ------~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v 161 (346)
T COG2706 89 ------SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYLVV 161 (346)
T ss_pred ------CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEEEE
Confidence 14588999999999998876 58999999865 433222 1224444 7888888 88888877
Q ss_pred ecC-CCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccc
Q 015371 202 GSD-DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 202 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
..- --.|.+|++............+ .....-..|.|+|++++..+..+ +++|.+|.........
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~------------- 227 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF------------- 227 (346)
T ss_pred eecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE-------------
Confidence 653 3478999976221111112222 34556788999999998777665 8899999988731110
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCCC-cee---EEEccCC
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSG-AQV---AKLDFHN 354 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~-~~~---~~~~~~~ 354 (408)
..++.+..-...-.-....-.+.+++||++|.++.. ...|.+|.+... ..+ .....+.
T Consensus 228 -----------------~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 228 -----------------EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred -----------------EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 111111111100111122233467889999998865 347888877543 222 2223344
Q ss_pred CCeeeeeEeCCCCeEEeecCC-CcEEEEeeCCC
Q 015371 355 APVRDCCWHPIYPMLISSSWD-CNIVRWEIPGI 386 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d-g~v~iw~~~~~ 386 (408)
.....+.+++.+++|+++..| ..|.+|..+..
T Consensus 291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 291 QFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred cCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 557889999999999888765 46999988653
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=9.9e-12 Score=105.12 Aligned_cols=285 Identities=15% Similarity=0.192 Sum_probs=167.9
Q ss_pred cCceeEEEEcCCCCeEEEEeC----CCcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQ----ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVD 113 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~----dg~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~ 113 (408)
......++++|++++|.+... ++.|..|.+... ..+...............++++|++++|+++. .+|.+.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344667899999999999866 578999998875 23322222221222566799999999999887 489999999
Q ss_pred CCCC-ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCc--cee--ee-cCcCCCc
Q 015371 114 VGSS-ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANK--CSL--RI-PAHKSDV 186 (408)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~~--~~-~~~~~~v 186 (408)
+... ..........+.+..... .........++.++|+++++++... ...|.+|++.... ... .+ .......
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~-~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNP-DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESST-TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred ccCCcccceeeeecccCCCCCcc-cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9874 332222222221111110 1112335889999999999888754 4579999997654 211 12 1234567
Q ss_pred eEEEEecCCCCEEEE-ecCCCeEEEEeccccccCCccceeeec----c--cCCeEEEEecCCCCeEEEeec-CCeEEEEe
Q 015371 187 NTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMG----H--LEGITFIDSRRDGRYFISNGK-DQTTKLWD 258 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~----~--~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd 258 (408)
+.+.|+ ++++++++ ...++.|.++++............... . ......+.++|||++|.++.. .+.|.+|+
T Consensus 195 Rh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 899999 67776655 455788999997511111112222211 1 125778999999998877654 67899999
Q ss_pred CCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEE
Q 015371 259 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVY 337 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~ 337 (408)
+...... ...+..+.... .......++|+|++|+++.. ++.|.
T Consensus 274 ~d~~~g~------------------------------l~~~~~~~~~G------~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 274 LDPATGT------------------------------LTLVQTVPTGG------KFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ECTTTTT------------------------------EEEEEEEEESS------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EecCCCc------------------------------eEEEEEEeCCC------CCccEEEEeCCCCEEEEEecCCCeEE
Confidence 8541100 01111111111 11234467889999998875 57899
Q ss_pred EEEC--CCCceeEEEc-cCCCCeeeeeE
Q 015371 338 IYDL--VSGAQVAKLD-FHNAPVRDCCW 362 (408)
Q Consensus 338 vwd~--~~~~~~~~~~-~~~~~v~~~~~ 362 (408)
+|++ .+|.+...-. ..-....|+.|
T Consensus 318 vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9876 4665444332 12334556655
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.8e-13 Score=117.30 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=146.2
Q ss_pred cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCCCC
Q 015371 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADGDE 139 (408)
Q Consensus 63 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (408)
.|.++|.+... ...... +...+....|+|||+.|+..+.+ ..|.+|++.+++...+.....
T Consensus 180 ~l~~~d~~g~~-~~~l~~---~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g------------ 243 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQ---SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG------------ 243 (430)
T ss_pred EEEEECCCCCC-ceEEec---CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC------------
Confidence 47777776543 222222 23368899999999999876643 368999998876544332211
Q ss_pred CccceEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCC--eEEEEec
Q 015371 140 DEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWDR 213 (408)
Q Consensus 140 ~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~iwd~ 213 (408)
.+....|+|||+.|+.. +.+| .|+++|+.+++.. .+..+........|+ ++++.|+..+ .+| .|.++|+
T Consensus 244 ---~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 244 ---LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred ---CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEEC
Confidence 24468999999988754 3344 6899999887643 455555667778999 7777665544 444 4666664
Q ss_pred cccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-C--eEEEEeCCCCcCccccccccccccccceeeccccccee
Q 015371 214 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-Q--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 290 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (408)
. .++. ..+...........|+|+|+.|+..+.+ + .|.++|+.+..
T Consensus 319 ~----~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~--------------------------- 366 (430)
T PRK00178 319 N----GGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS--------------------------- 366 (430)
T ss_pred C----CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---------------------------
Confidence 3 2322 2222222233457899999998877653 3 47788877622
Q ss_pred eccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC---CeEEEEECCCCceeEEEccCCCCeeeeeEeCC
Q 015371 291 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
...+.... ....+.|+|||+.++..+.+ ..|+++++. +.....+..+.+.+...+|+|-
T Consensus 367 --------~~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 367 --------VRILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --------EEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 11111100 01135789999999877654 357778874 4445556556667888888874
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.64 E-value=1.9e-14 Score=127.60 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=150.5
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc----eEEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV----NTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v----~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
|....+..+.+.++.++.+..+.+||...+.....+....... .-+-++ ++.-++++|+.-+.|.+|+.. .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~----~ 164 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKPH----E 164 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEecc-CcEEEEEeccccccEEEEecc----c
Confidence 4444555577789999999999999998877666655322111 112233 667789999999999999975 2
Q ss_pred CccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce
Q 015371 220 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 299 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
......+.+|.+.|.++.++.||+++++.++|..+++|++.+.+.. .
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~---------------------------------~ 211 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL---------------------------------G 211 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------------------------------C
Confidence 2222368899999999999999999999999999999999983321 1
Q ss_pred eeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCC-CCeeeeeEeCCCCeEEeecCCCcE
Q 015371 300 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCCWHPIYPMLISSSWDCNI 378 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v 378 (408)
...-+|. .-+|...+.|+ .+++++.|.+.++|+. +++.+..+..|. ..|..++..++...++|++.||.+
T Consensus 212 ~~~fgHs------aRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 212 CTGFGHS------ARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccccccc------ceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 2333444 33455567766 8999999999999975 566666887774 579999999999999999999999
Q ss_pred EEEeeCCCCC
Q 015371 379 VRWEIPGIGE 388 (408)
Q Consensus 379 ~iw~~~~~~~ 388 (408)
++|++.....
T Consensus 283 k~~~l~~r~~ 292 (967)
T KOG0974|consen 283 KLWDLNGRGL 292 (967)
T ss_pred hhhhhhcccc
Confidence 9999976544
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.3e-14 Score=116.96 Aligned_cols=254 Identities=15% Similarity=0.147 Sum_probs=173.4
Q ss_pred cceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 83 ALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
.+...-+.|..+|||+|++ +|...-.|++||+.+-..+....+... .|.-.-++.|-..++.-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae--------------~V~feiLsDD~SK~v~L~~ 114 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE--------------VVDFEILSDDYSKSVFLQN 114 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccc--------------ceeEEEeccchhhheEeec
Confidence 3445678899999999875 566677999999987765444333221 3555555556666666667
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
|..|-+...........+ ...-.+|+++.+...+++.|+.. .|+-+++ ..+..+..+....+.++++..++.
T Consensus 115 DR~IefHak~G~hy~~RI---P~~GRDm~y~~~scDly~~gsg~-evYRlNL----EqGrfL~P~~~~~~~lN~v~in~~ 186 (703)
T KOG2321|consen 115 DRTIEFHAKYGRHYRTRI---PKFGRDMKYHKPSCDLYLVGSGS-EVYRLNL----EQGRFLNPFETDSGELNVVSINEE 186 (703)
T ss_pred CceeeehhhcCeeeeeec---CcCCccccccCCCccEEEeecCc-ceEEEEc----cccccccccccccccceeeeecCc
Confidence 887766554322222222 23446788886777777766654 5666665 488888888888899999999999
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
..+|++|+.+|.|.+||.+.......... ......+.. ......+.++.|+
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~----------------------------~~~v~s~pg-~~~~~svTal~F~ 237 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDA----------------------------ASSVNSHPG-GDAAPSVTALKFR 237 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeec----------------------------ccccCCCcc-ccccCcceEEEec
Confidence 99999999999999999998433222110 000111111 1111234556788
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEEc-cCCCCeeeeeEeCCC--CeEEeecCCCcEEEEeeCCCCC
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIY--PMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.+ +.++|. ....++|||-.+++.
T Consensus 238 d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 238 DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred CCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 889999999999999999999988776543 235589999997763 356655 356799999887765
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.8e-12 Score=112.30 Aligned_cols=242 Identities=10% Similarity=0.059 Sum_probs=144.3
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE---EeecC--cEEEEEECCCCceeeeeeeeeeeeeeeecC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV---YASIC--AIVNIVDVGSSARESLANVTIHKGLDFSAD 136 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (408)
+.|.+.|.+.+.. ..+... ...+..-+|+|||+.++ +...+ ..|.+.++.+++...+.....
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~---~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQE---HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCCc-eEcccC---CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 3577777655432 222222 22466789999997532 33333 367788888776654444322
Q ss_pred CCCCccceEEEEEcCCCCEEEEEec-CC----eEEEEECCCC---cceeeecCcCCCceEEEEecCCCCEEEEec-CCCe
Q 015371 137 GDEDEFGIFSVKFSTDGQELVAAGS-DN----FIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL 207 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~ 207 (408)
.....+|+|||+.|+..+. +| .+..|++..+ +...............+|+ |+++.|+..+ .+|.
T Consensus 232 ------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~ 304 (428)
T PRK01029 232 ------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGR 304 (428)
T ss_pred ------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCC
Confidence 2446799999998887653 22 3444676653 3222232223445678999 8888666554 5676
Q ss_pred EEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCccccccccccccccceeecc
Q 015371 208 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 284 (408)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
..+|.+... ..+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+...
T Consensus 305 ~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-------------------- 363 (428)
T PRK01029 305 PRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-------------------- 363 (428)
T ss_pred ceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--------------------
Confidence 666654310 1122234444455567788999999988876543 3688999876321
Q ss_pred cccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC---CCeEEEEECCCCceeEEEccCCCCeeeee
Q 015371 285 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---DNSVYIYDLVSGAQVAKLDFHNAPVRDCC 361 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (408)
..+.... .....+.|+|||+.|+.... ...|+++|+.+++...... ..+.+...+
T Consensus 364 ---------------~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~ 421 (428)
T PRK01029 364 ---------------YQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPS 421 (428)
T ss_pred ---------------EEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCce
Confidence 1111111 01234578999998875443 3569999998776544433 455677889
Q ss_pred EeCCC
Q 015371 362 WHPIY 366 (408)
Q Consensus 362 ~~~~~ 366 (408)
|+|-.
T Consensus 422 Ws~~~ 426 (428)
T PRK01029 422 WGAFP 426 (428)
T ss_pred ecCCC
Confidence 98754
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=6.4e-14 Score=109.21 Aligned_cols=273 Identities=16% Similarity=0.239 Sum_probs=173.1
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCce---eeeeeeeeeeeeeeecC-CCCCccceEEEEEcCCCC--EEEEEe
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSAR---ESLANVTIHKGLDFSAD-GDEDEFGIFSVKFSTDGQ--ELVAAG 160 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~--~l~~~~ 160 (408)
-|.++.|...|.+|++|..+|.|.++.-+.... .....++.|.. .|... .-+....|..+.|.++++ .++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-EFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-EFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc-ccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 589999999999999999999999997543321 11111111111 11110 011223688999988654 667777
Q ss_pred cCCeEEEEECCCCccee-----------------------------------ee-cCcCCCceEEEEecCCCCEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSL-----------------------------------RI-PAHKSDVNTVCFADETGHLIFSGSD 204 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~-----------------------------------~~-~~~~~~v~~l~~~~~~~~~l~~~~~ 204 (408)
.|.+|++|.+....... .+ .+|..-|+++.++ .+...++++ .
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA-D 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA-D 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-c
Confidence 89999999875321110 01 3578889999998 788777765 4
Q ss_pred CCeEEEEeccccccCCccceeeec-----ccCCeEEEEecCC-CCeEEEeecCCeEEEEeCCCCcCcccccccccccccc
Q 015371 205 DSLCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 278 (408)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 278 (408)
|=.|.+|.+......... ..++. -..-|++..|+|. .+.++-.+..|+|++-|++.........+
T Consensus 184 dLRINLWnlei~d~sFnI-VDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK-------- 254 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNI-VDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK-------- 254 (433)
T ss_pred ceeeeeccccccCCceeE-EEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh--------
Confidence 778999997632211111 11222 2456888899995 56788888899999999996321110000
Q ss_pred ceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC-CCCceeEEEccCC---
Q 015371 279 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL-VSGAQVAKLDFHN--- 354 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~--- 354 (408)
....+.... .......++..+....|+++|+|+++-+. -+|++||+ ...+++.+++.|.
T Consensus 255 -----------lfEepedp~-----~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 255 -----------LFEEPEDPS-----SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred -----------hhccccCCc-----chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 000000000 01111222344556679999999998754 47999999 4567777776663
Q ss_pred ---------CCe---eeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 355 ---------APV---RDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 355 ---------~~v---~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
..| ..++|+-++.+++||+....++++++..+..
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 233 3478999999999999999999999655433
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=5e-13 Score=102.06 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=142.7
Q ss_pred CceeEEEEcC---CCC-eEEEEeCCCcEEEEEcCCCeeEEEeccccccee---eEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 41 SRVYTSQFSN---DGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRW---TITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 41 ~~v~~~~~s~---~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+..+.|.. +|. .|+-+..+|.|.++..........+.......- ...++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4456666653 455 566677789999998766544333322222111 245778999999999999999998666
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECC-CCcceee-ecCcCCCceEEE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQ-ANKCSLR-IPAHKSDVNTVC 190 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~-~~~~~~~v~~l~ 190 (408)
......+....++.| ..++....|+. +.+.+++|+.|+.+..||++ .++.+.. .+.|...|.++.
T Consensus 150 ~t~~~le~vq~wk~H------------e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVH------------EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred cceeeeeeccccccc------------ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 655555544455544 44788888876 45688999999999999998 3444443 456899999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC--eEEEeecCCeEEEEeCCC
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR--YFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~ 261 (408)
-+||.+.++++|+.|-.|++||.|+ .++++..-. -.+.|..+..+|.-. .|+++-.+| .++-+...
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRn---m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRN---MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhc---ccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 9999999999999999999999873 344443322 348899999998533 344444444 67777665
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=5.3e-13 Score=111.58 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=154.6
Q ss_pred cCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeC------C--------------CCceEEEeecCcE
Q 015371 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLS------P--------------DQRFLVYASICAI 108 (408)
Q Consensus 49 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~~dg~ 108 (408)
.|-..++|....||.+++|+...++....+.......+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3556899999999999999999886666555544444455555552 2 2346778888999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceE
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 188 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 188 (408)
|.+|++..++........ .|..+|.++.++.+-..|.+++.|..+..|+......+.........+.+
T Consensus 82 v~~ys~~~g~it~~~st~------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTD------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred EEEEEecCCeEEEEEecC------------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 999999888765444433 34558999999999999999999999999999999999999988899999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC-----CCeEEEee-cCCeEEEEeCCC
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-----GRYFISNG-KDQTTKLWDIRK 261 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~d~~i~iwd~~~ 261 (408)
++++ |++..+++++ +.|++||+. ..+.+..+.+|.++|.++.|.-+ |.+++++. .+..+.+|-++.
T Consensus 150 l~is-~D~~~l~~as--~~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 150 LCIS-PDGKILLTAS--RQIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEc-CCCCEEEecc--ceEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999 8899999887 579999964 89999999999999999999776 66666543 345577776655
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=1.6e-12 Score=114.00 Aligned_cols=193 Identities=18% Similarity=0.109 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCC--eEEEEecccc
Q 015371 143 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDS--LCKVWDRRCF 216 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg--~i~iwd~~~~ 216 (408)
.+....|+|||++|+.+..+ ..|++||+.+++... +..+...+.+++|+ |+++.|+ +.+.++ .|.+||+.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~-- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD-- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence 47788999999999987654 479999998876433 33455667789999 7777555 555554 47788864
Q ss_pred ccCCccceeeecccCCeEEEEecCCCCeEEEeec-CC--eEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.+ ....+..+........|+|+|+.|+..+. ++ .|+++|+.+..
T Consensus 267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 23334444444557789999998876654 33 46777765411
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC---eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEE
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI 370 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (408)
...+..+. .....+.|+|+|++|+.++.++ .|.+||+.++.. ..+... .......|+|+++.|+
T Consensus 314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEE
Confidence 11111111 1123457889999999888776 799999987654 333322 2345678999999887
Q ss_pred eecCCC---cEEEEeeCC
Q 015371 371 SSSWDC---NIVRWEIPG 385 (408)
Q Consensus 371 s~~~dg---~v~iw~~~~ 385 (408)
.++.++ .+++.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 776654 355555444
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.59 E-value=3.7e-11 Score=98.94 Aligned_cols=277 Identities=11% Similarity=0.043 Sum_probs=165.1
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec----------CcEEEEEECCCCceeeeeeeeeeeee
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----------CAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
++|.+.|..+.+.+..+..... ...+ ++||++.|+++.. +..|.+||..+.+.............
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 7899999998866655544333 2224 9999999987765 78999999999876544333211000
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 209 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 209 (408)
. .......++++|||++|++... +..|.+.|+.+++.+..+.... ...-...+ ++..+ +-+.||...
T Consensus 102 ~-------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~--~~~~Dg~~~ 170 (352)
T TIGR02658 102 L-------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF--MHCRDGSLA 170 (352)
T ss_pred h-------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE--EEeecCceE
Confidence 0 0012447899999999998763 6899999999999888876422 11222221 22222 233455554
Q ss_pred EEeccccccCCccc-ee---eecccCCe-EEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 210 VWDRRCFISKGRAN-GV---LMGHLEGI-TFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 210 iwd~~~~~~~~~~~-~~---~~~~~~~i-~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
...+. ..++.. .. +.....++ ..-.+.+ +|+++.+..+ |.|.+.|+........
T Consensus 171 ~v~~d---~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~---------------- 230 (352)
T TIGR02658 171 KVGYG---TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL---------------- 230 (352)
T ss_pred EEEec---CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec----------------
Confidence 44332 111111 00 10100000 0003455 7877777665 9999999765321111
Q ss_pred ccccceeeccCCCcceeeeecccc-eeeEEEEEeeccccCCCcEEEEee----------CCCeEEEEECCCCceeEEEcc
Q 015371 284 YPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGS----------SDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~ 352 (408)
..+..+..... ........--.+++++++.+++.. ..+.|.++|..+++.+..+..
T Consensus 231 -------------~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 231 -------------PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred -------------ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 11111100000 000000000136788888888743 125799999999999998874
Q ss_pred CCCCeeeeeEeCCCC-eEEeec-CCCcEEEEeeCCCCC
Q 015371 353 HNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGE 388 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~-~l~s~~-~dg~v~iw~~~~~~~ 388 (408)
...+..++++||++ +|++.. .++.|.+.|..+++.
T Consensus 298 -G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 298 -GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred -CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 45789999999999 777665 678899999987654
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=2.6e-14 Score=133.47 Aligned_cols=220 Identities=17% Similarity=0.227 Sum_probs=165.8
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.|.++.-+|...+.++|+.||.+++|....++.......... ..|+.+.|+.+|+.+..+..||.+.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-------------s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-------------SRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-------------chhhhhhhcccCCceeeeccCCcee
Confidence 688888899999999999999999999988776544443333 2599999999999999999999999
Q ss_pred EEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec---CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC
Q 015371 167 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 243 (408)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 243 (408)
+|... .++....+.|....+++.|- +..+++++ .++.+.+||.. . ....-.....|.+.++++++-|..+
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl--~-~~~~s~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTL--L-PPMNSLVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred ecccC-CcceeccccCCccccceeee---ehhhhccccCCCCCcccchhcc--c-CcccceeeeecCCCceEEEEcCcce
Confidence 99986 66677778899999999998 36677654 47889999964 1 2222222388999999999999999
Q ss_pred eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC
Q 015371 244 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323 (408)
Q Consensus 244 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (408)
+|++|+.+|.|++||++. .+....++. +. .
T Consensus 2350 llisggr~G~v~l~D~rq----------------------------------rql~h~~~~---------------~~-~ 2379 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQ----------------------------------RQLRHTFQA---------------LD-T 2379 (2439)
T ss_pred EEEecCCcCcEEEeehHH----------------------------------HHHHHHhhh---------------hh-h
Confidence 999999999999999987 222333322 11 2
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEcc---CCCC--e--eeeeEeCCCCeEEeecCCCc
Q 015371 324 QKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAP--V--RDCCWHPIYPMLISSSWDCN 377 (408)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~--v--~~~~~~~~~~~l~s~~~dg~ 377 (408)
..++++|+..|.++||++.....++++.. |.+- . ..+-.. ..+.|.+|+.||+
T Consensus 2380 ~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2380 REYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred hheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 67899999999999999988877776642 2211 1 111112 2346777777763
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=2.7e-12 Score=114.35 Aligned_cols=199 Identities=17% Similarity=0.272 Sum_probs=154.3
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc-eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCce
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (408)
+.|....+..+.+.++.+..+..+.+|+...+....+....... -....-+.++++.-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44444556667778888888889999998877554443322211 11233345677888999999999999999873222
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee-eecCcCCCceEEEEecCCCCE
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~ 198 (408)
.. ... +|...|.++.|+.||.++++.+.|..+++|++++.+... ..-+|...|..++|. ++ .
T Consensus 168 -p~-~l~------------GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n--~ 230 (967)
T KOG0974|consen 168 -PI-RLK------------GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN--R 230 (967)
T ss_pred -cc-eec------------ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc--e
Confidence 11 233 345589999999999999999999999999999988766 556899999999999 44 9
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccC-CeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-GITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
++++++|-+.++|+. .+..+..+.+|.. .|..++..++...+++++.|+.+++||+..
T Consensus 231 i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999999975 4555557777764 689999999999999999999999999865
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.4e-13 Score=113.81 Aligned_cols=286 Identities=10% Similarity=0.112 Sum_probs=193.8
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee------------EEEecccccceeeEEEEEeCCCCceEEEeecCc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK------------IQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 107 (408)
.....|++|+....++|+|+.||.+++-.+.+... +.......+|...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45688999999999999999999999999875421 111234568889999999999999999999999
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee-eecCcCCCc
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDV 186 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v 186 (408)
.|.+|-+-.+.--....-...+. -|.+++|+.||..+.....||.|.+=.+.....-. .++ ....
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKS------------vV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l 159 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKS------------VVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLL 159 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCcc------------EEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhec
Confidence 99999987665322222222222 59999999999999999999999888776443211 122 2234
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccC---Ccccee----eecccCCeEEEEec--------CCCCeEEEeecC
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISK---GRANGV----LMGHLEGITFIDSR--------RDGRYFISNGKD 251 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~----~~~~~~~i~~~~~~--------~~~~~l~~~~~d 251 (408)
..+.|+ ++...++.+-.+|.+.++|....... ..+... +......|..+.|. |+...|+++..+
T Consensus 160 ~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 160 AHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred cceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 578899 88888888889999999995421100 011011 11112234455543 467789999999
Q ss_pred CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee
Q 015371 252 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 331 (408)
|.+.+..-.+.. .++..-.+ --+....|+++|..||+++
T Consensus 239 Gr~QiMR~eND~---------------------------------~Pvv~dtg--------m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 239 GRMQIMRSENDP---------------------------------EPVVVDTG--------MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred ceehhhhhcCCC---------------------------------CCeEEecc--------cEeecceecCCCcEEEEcc
Confidence 988886544411 11111111 1122346888899999987
Q ss_pred CC---------CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 332 SD---------NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 332 ~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|++=++
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence 64 2566665 4688888998888899999998776655544 3555555433
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.7e-12 Score=111.31 Aligned_cols=227 Identities=11% Similarity=0.062 Sum_probs=166.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC------------------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG------------------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIK 65 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~------------------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~ 65 (408)
-.|++|..+..|++.++.+....++.... .++|.||++.|.-+.|+.+.+.|-|...+|.|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 36889999999999999888877765432 257889999999999999999999999999999
Q ss_pred EEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE
Q 015371 66 VYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF 145 (408)
Q Consensus 66 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (408)
+|-+-.+.-... .......+.|.+|+|+.||..++....||.|.+=.++..+. .-..++.. ...
T Consensus 97 VWmlykgsW~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~--------------~l~ 160 (1189)
T KOG2041|consen 97 VWMLYKGSWCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQ--------------LLA 160 (1189)
T ss_pred EEeeecccHHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchh--------------ecc
Confidence 999877632222 22333445799999999999999999999998877765442 11112111 256
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCcce-------e----eecCcCCCceEEEEe-------cCCCCEEEEecCCCe
Q 015371 146 SVKFSTDGQELVAAGSDNFIYVYDLQANKCS-------L----RIPAHKSDVNTVCFA-------DETGHLIFSGSDDSL 207 (408)
Q Consensus 146 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~----~~~~~~~~v~~l~~~-------~~~~~~l~~~~~dg~ 207 (408)
.+.|++|.+.++.+-.+|.+.++|.+..-.. . .+......|..+.|. ||+...|+++..+|.
T Consensus 161 hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 161 HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 7899999999998888999999997643110 0 111222346666665 578889999999999
Q ss_pred EEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC
Q 015371 208 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
+.+-.-. ....++.. ...-.+....|+++|..|++++.+
T Consensus 241 ~QiMR~e---ND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 241 MQIMRSE---NDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ehhhhhc---CCCCCeEE--ecccEeecceecCCCcEEEEccCc
Confidence 9887632 12222222 233678899999999999999875
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3e-12 Score=112.34 Aligned_cols=196 Identities=17% Similarity=0.087 Sum_probs=124.6
Q ss_pred ceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCC--eEEEEecccc
Q 015371 143 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDS--LCKVWDRRCF 216 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg--~i~iwd~~~~ 216 (408)
.+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+ |+++.|+ +.+.+| .|.++|+.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~-- 275 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLA-- 275 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECC--
Confidence 58889999999999876643 479999998886433 33334455678999 7777665 555555 57777864
Q ss_pred ccCCccceeeecccCCeEEEEecCCCCeEEEeec-CC--eEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.+ ....+..+........|+|||+.|+..+. ++ .|+++|+.+..
T Consensus 276 --~~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~------------------------------ 322 (430)
T PRK00178 276 --SR-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR------------------------------ 322 (430)
T ss_pred --CC-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 23344455555667889999998776654 33 46666765421
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-C--eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEE
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-N--SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI 370 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (408)
...+.... .....+.|+|||++|+..+.+ + .|.++|+.+++.. .+. +........|+|||+.++
T Consensus 323 -----~~~lt~~~------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 323 -----AERVTFVG------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLI 389 (430)
T ss_pred -----EEEeecCC------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEE
Confidence 11111000 011235688999999877653 3 5889999887643 332 222334568999999877
Q ss_pred eecCC---CcEEEEeeCCCCC
Q 015371 371 SSSWD---CNIVRWEIPGIGE 388 (408)
Q Consensus 371 s~~~d---g~v~iw~~~~~~~ 388 (408)
.++.+ ..+.++++.....
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred EEEecCCceEEEEEECCCCce
Confidence 66543 3466777755433
No 261
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=1.7e-13 Score=105.60 Aligned_cols=267 Identities=18% Similarity=0.238 Sum_probs=170.8
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-eEEE-ecccccc------------eeeEEEEEeCCCC--ceEEEe
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQK-DIETKAL------------RWTITDTSLSPDQ--RFLVYA 103 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~-~~~~~~~------------~~~v~~~~~~~~~--~~l~~~ 103 (408)
.+.|+++.|...|.||++|...|.|.++.-+... +..+ +.....| ...|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999855432 1111 1111122 2368889997654 356666
Q ss_pred ecCcEEEEEECCCCceeeeeeee-------------------------eeeeeeee----cCCCCCccceEEEEEcCCCC
Q 015371 104 SICAIVNIVDVGSSARESLANVT-------------------------IHKGLDFS----ADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~-------------------------~~~~~~~~----~~~~~~~~~i~~~~~~~~~~ 154 (408)
+.|.+|++|.+.....+.+..-. .+...... .....|...|.++.|..|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999998655322111111 11111000 11246777899999999998
Q ss_pred EEEEEecCCeEEEEECCCCccee---eecCc-----CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC------
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSL---RIPAH-----KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG------ 220 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~---~~~~~-----~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------ 220 (408)
.++++. |=.|.+|+++-..... .++.| ..-|++..|+|...+.+.-.+..|.|++-|+|....-.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 888774 6789999886433222 22333 34588899998888888889999999999998321111
Q ss_pred ------ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccC
Q 015371 221 ------RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294 (408)
Q Consensus 221 ------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (408)
....-+.+-...|..+.|+++|+++++-.. -++++||.+...
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k------------------------------- 312 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK------------------------------- 312 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc-------------------------------
Confidence 111112234466788999999999987654 479999998743
Q ss_pred CCcceeeeecccc---------eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 295 HDQSLATYKGHSV---------LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 295 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
.++.+...|.. ....+-..|...||.|.+.+++|+..+..-+|-.
T Consensus 313 --~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 313 --NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred --CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 33333333221 1112223345567888888888888777777653
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=3.9e-14 Score=132.39 Aligned_cols=192 Identities=11% Similarity=0.217 Sum_probs=149.5
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEEC
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 114 (408)
.++.|-..|.++.=+|...+.+||+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|..
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeeccc
Confidence 4455667788888899899999999999999999988877665544333 58999999999999999999999999998
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCC---cceeeecCcCCCceE
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQAN---KCSLRIPAHKSDVNT 188 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~---~~~~~~~~~~~~v~~ 188 (408)
.. +.....+.|. ....++.|-. ..+++++. ++.+.+||.--. .++. ..|.+.+++
T Consensus 2281 ~p---k~~~s~qchn------------k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2281 SP---KPYTSWQCHN------------KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATV 2341 (2439)
T ss_pred CC---cceeccccCC------------ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceE
Confidence 72 2233333333 2577777764 55666644 689999996322 2222 789999999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
+++. |..++|++|+.+|.|++||+| ..+..+.++. +. ...+|++++..|.++||++...
T Consensus 2342 l~~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2342 LAYA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEc-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999 889999999999999999987 5555555543 33 5678999999999999999874
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=8.7e-12 Score=108.94 Aligned_cols=196 Identities=16% Similarity=0.073 Sum_probs=120.6
Q ss_pred ceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCCe--EEEEecccc
Q 015371 143 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCF 216 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~--i~iwd~~~~ 216 (408)
.+.+..|+|||+.|+..+.+ ..|+++|+.+++... +....+.....+|+ |+++.|+ +.+.+|. |.++|+.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~-- 294 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIA-- 294 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECC--
Confidence 57889999999999877543 369999998876432 32223344578999 7777665 4566675 6666753
Q ss_pred ccCCccceeeecccCCeEEEEecCCCCeEEEeec-CC--eEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+..
T Consensus 295 --tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~------------------------------ 341 (448)
T PRK04792 295 --TK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK------------------------------ 341 (448)
T ss_pred --CC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 33444445556678899999998876654 34 35556665421
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-C--eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEE
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-N--SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI 370 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (408)
...+.... .....++|+|||++|+..+.+ + .|.++|+.+++.. .+... .......|+|||+.|+
T Consensus 342 -----~~~Lt~~g------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 342 -----VSRLTFEG------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred -----EEEEecCC------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 11111010 011235789999998876653 3 4667888777643 33222 1233568999999776
Q ss_pred eecC-CC--cEEEEeeCCCCC
Q 015371 371 SSSW-DC--NIVRWEIPGIGE 388 (408)
Q Consensus 371 s~~~-dg--~v~iw~~~~~~~ 388 (408)
..+. +| .+++++.++...
T Consensus 409 ~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred EEEecCCceEEEEEECCCCce
Confidence 6543 33 366777755433
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.53 E-value=6e-11 Score=97.08 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=132.9
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCcceeeecC-----------cCCCceEEE-EecCCCCEEEEecCCCeEEEEeccccc
Q 015371 150 STDGQELVAAGSDNFIYVYDLQANKCSLRIPA-----------HKSDVNTVC-FADETGHLIFSGSDDSLCKVWDRRCFI 217 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v~~l~-~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (408)
+.||+.++.. ..|.|++||.++......--+ .-.+..-+. |++.++++++..|. |...+.+.
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~---- 348 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP---- 348 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC----
Confidence 3467777654 468899999876543221000 011222222 45567888888875 56667663
Q ss_pred cCCccceeeecccCCeEEEEecCCCCeEEEeecCC-eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCC
Q 015371 218 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296 (408)
Q Consensus 218 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (408)
..-.....++.+.|.-..+.-+++-++.|..|| .+-++|.++..
T Consensus 349 --~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--------------------------------- 393 (668)
T COG4946 349 --WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--------------------------------- 393 (668)
T ss_pred --CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------------------------
Confidence 222233346777888888888888899999998 89999998732
Q ss_pred cceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCC
Q 015371 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 376 (408)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 376 (408)
+..+...- ..++.+..+++|++++.+.....+.+.|+.+++....-+...+-|+.++|||+++++|-+--+|
T Consensus 394 --~kr~e~~l------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 394 --VKRIEKDL------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred --EEEeeCCc------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 22222222 3455667889999999999999999999999987665566678899999999999999876554
Q ss_pred ----cEEEEeeCCCCC
Q 015371 377 ----NIVRWEIPGIGE 388 (408)
Q Consensus 377 ----~v~iw~~~~~~~ 388 (408)
.|+++|+.+++-
T Consensus 466 y~tq~Iklydm~~~Ki 481 (668)
T COG4946 466 YYTQSIKLYDMDGGKI 481 (668)
T ss_pred eeeeeEEEEecCCCeE
Confidence 688999987654
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.53 E-value=7.7e-11 Score=110.42 Aligned_cols=325 Identities=14% Similarity=0.126 Sum_probs=188.2
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEE----EcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEEC
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVY----NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 114 (408)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +.. .......|.+++||||+..|+..+.++++.+..-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 34789999999999999999999999999 444331 111 1223347999999999999999999998877643
Q ss_pred CCCceeee----------------------eeeeeeeeeee-----ec--------CCCCCccceEEEEEcCCCCEEEEE
Q 015371 115 GSSARESL----------------------ANVTIHKGLDF-----SA--------DGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 115 ~~~~~~~~----------------------~~~~~~~~~~~-----~~--------~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
. .+.... ..+.+..+... .+ ... ....-..++|-.||+++|+.
T Consensus 150 ~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 150 D-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred c-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence 2 111000 01111100000 00 001 23356689999999999988
Q ss_pred ec---C---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC---CCeEEEEeccccccCCccceeeeccc
Q 015371 160 GS---D---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 160 ~~---d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
+- . ..++||+-+ |+....-..-.+--.+++|- |.|++|++.-. ...|.+|..+ +...++....+....
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCC
Confidence 75 2 478999865 65544444334445678998 88999988765 3457777632 112222222223456
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec-cccc---ceeeccCCC-cceeeeecc
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME-YPSY---ARRLKHPHD-QSLATYKGH 305 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-~~~~~~~~~ 305 (408)
..|..+.|++|+..|+..-.|. |.+|-..+.. |-.+... ++.. ....+++.. ..+..+..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~- 369 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS- 369 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------------EEEEEEEEccCCCCCCceEECCCCCCEEEEEec-
Confidence 6899999999999999977665 9999877621 1111000 0000 001111111 11111111
Q ss_pred cceeeEEEEEeecccc----CCCcEEEEeeCCCeEEEEECCCCce-----eEEEccCCCCeeeeeEeCCCCeEEeecCCC
Q 015371 306 SVLRTLIRCYFSPEYS----TAQKYIYTGSSDNSVYIYDLVSGAQ-----VAKLDFHNAPVRDCCWHPIYPMLISSSWDC 376 (408)
Q Consensus 306 ~~~~~~~~~~~~~~~s----~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 376 (408)
..........|..+.+ |+..-++..-+...+.+-.++.... ...+. -..+|.+++|++++..+++-..||
T Consensus 370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCC
Confidence 1112222333333322 2222222222223455555543321 23333 356899999999998899999999
Q ss_pred cEEEEeeCCCCC
Q 015371 377 NIVRWEIPGIGE 388 (408)
Q Consensus 377 ~v~iw~~~~~~~ 388 (408)
.|.+|.......
T Consensus 449 ~l~~~~~~~~~~ 460 (928)
T PF04762_consen 449 SLSIYEWDLKNM 460 (928)
T ss_pred CEEEEEecCCCc
Confidence 999999766433
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7.9e-10 Score=87.73 Aligned_cols=290 Identities=12% Similarity=0.160 Sum_probs=175.3
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeC---CCcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeec-CcEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQ---ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIV 109 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i 109 (408)
.+-.+.+.++=++|+|+++.|.++.. +|.|.-|.++.. ..+...........+.+.+++++++++++++.. .|.|
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 34467788999999999999998854 578888888753 222222222222224588999999999998874 5789
Q ss_pred EEEECCC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCcceeeec---CcCC
Q 015371 110 NIVDVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIP---AHKS 184 (408)
Q Consensus 110 ~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~---~~~~ 184 (408)
.++-+.. +..........+.+.. +.......-+....+.|++++|++.+- --.|.+|++..++....-. ....
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~--p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSG--PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred EEEEcccCCccccceeeeecCCCC--CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 9999865 3332222222222211 111111123889999999999998865 3469999999776433221 2345
Q ss_pred CceEEEEecCCCCEEEEecC-CCeEEEEeccccccCCccceeeec------ccCCeEEEEecCCCCeEEEeec-CCeEEE
Q 015371 185 DVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMG------HLEGITFIDSRRDGRYFISNGK-DQTTKL 256 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-d~~i~i 256 (408)
..+.|.|+ |++++..+..+ +++|.+|........-+.++.+.. -......|..++||++|.++.+ ...|.+
T Consensus 192 GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 192 GPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 67999999 88888776655 899999997632111122222111 2345678889999999887754 335777
Q ss_pred EeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-Ce
Q 015371 257 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NS 335 (408)
Q Consensus 257 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~ 335 (408)
|.+.... ..+.......... .......++++|++|+++..+ ..
T Consensus 271 f~V~~~~---------------------------------g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 271 FSVDPDG---------------------------------GKLELVGITPTEG---QFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEcCCC---------------------------------CEEEEEEEeccCC---cCCccceeCCCCCEEEEEccCCCc
Confidence 7766521 1111111111111 112233577889999988876 45
Q ss_pred EEEEECC--CCceeEEEc-cCCCCeeeeeEe
Q 015371 336 VYIYDLV--SGAQVAKLD-FHNAPVRDCCWH 363 (408)
Q Consensus 336 i~vwd~~--~~~~~~~~~-~~~~~v~~~~~~ 363 (408)
|.+|... +|++-.... .......|+.|.
T Consensus 315 i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 315 ITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 7787664 444332222 223344555553
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.8e-12 Score=111.03 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=124.8
Q ss_pred eeeEecCCccE---EEeec----CceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeC-CC----cEEEEEcCCC
Q 015371 5 REVNYSGRGRF---SAADS----CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-ES----NIKVYNVDKN 72 (408)
Q Consensus 5 ~~~~~s~dg~~---~~~~~----~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg----~i~iw~~~~~ 72 (408)
..-+|||||+. +.... ..+....+.......+....+.....+|||||+.||..+. +| .+.+|++..+
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 34589999963 22221 1222222333445666666777778999999998887653 22 2344676543
Q ss_pred --eeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEE--ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEE
Q 015371 73 --WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV--DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147 (408)
Q Consensus 73 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 147 (408)
......... ........+|+|||+.|+..+ .+|...+| ++...... ...+.... ..+...
T Consensus 268 ~~g~~~~lt~~--~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~~lt~~~------------~~~~~p 332 (428)
T PRK01029 268 AIGKPRRLLNE--AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PRLLTKKY------------RNSSCP 332 (428)
T ss_pred CCCcceEeecC--CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eEEeccCC------------CCccce
Confidence 122222211 111345679999999888766 45655555 44321110 11111111 136678
Q ss_pred EEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEE-ecC--CCeEEEEeccccccCCc
Q 015371 148 KFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS-GSD--DSLCKVWDRRCFISKGR 221 (408)
Q Consensus 148 ~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~ 221 (408)
.|+|||+.|+..+.+ ..|++||+.+++... +......+....|+ |+++.|+. +.. ...|.++|+. .++
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wS-pDG~~L~f~~~~~g~~~L~~vdl~----~g~ 406 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWA-IDSLHLVYSAGNSNESELYLISLI----TKK 406 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECC----CCC
Confidence 999999998877543 479999998887543 33334467789999 78877664 333 3457777863 222
Q ss_pred cceeeecccCCeEEEEecCCC
Q 015371 222 ANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 222 ~~~~~~~~~~~i~~~~~~~~~ 242 (408)
...+....+.+...+|+|-.
T Consensus 407 -~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 407 -TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred -EEEeecCCCcccCceecCCC
Confidence 23333344556677787643
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.6e-11 Score=102.32 Aligned_cols=292 Identities=18% Similarity=0.273 Sum_probs=178.7
Q ss_pred cceeeEecCCccEEEeecCceEEE----------EEEecC---ceeee-cccCceeEEEEcCCCCeEEEEeCCCcEEEEE
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSR----------YLPVNG---PWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~----------~~~~~~---~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 68 (408)
...+|.|||-|.++.+-....+.. .+.... ...+. ..... ++..|++|..+.|-- ..+.+.+|+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEe
Confidence 356789999999877533222111 111111 01111 11222 688999988654432 345799999
Q ss_pred cCCCeeEEEecccccceeeEEEEEeCCCC--ceEEE-----eecCcEEEEEECCCCceeeeeeee-eeeeeeeecCCCCC
Q 015371 69 VDKNWKIQKDIETKALRWTITDTSLSPDQ--RFLVY-----ASICAIVNIVDVGSSARESLANVT-IHKGLDFSADGDED 140 (408)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 140 (408)
+.+...+...+ |...|+.+.++|.+ ..+|+ .+.-+.+++|...-.........+ ..+.
T Consensus 153 ~~~f~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka---------- 218 (566)
T KOG2315|consen 153 LGSFKTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA---------- 218 (566)
T ss_pred cCCccceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc----------
Confidence 88754443333 23368999999863 34443 245568999987632211111000 0000
Q ss_pred ccceEEEEEcCCCCE-EEEEec-----------CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEE--ecCCC
Q 015371 141 EFGIFSVKFSTDGQE-LVAAGS-----------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS--GSDDS 206 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~-l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~--~~~dg 206 (408)
.=..+.|++-|.- |+.++. +..+++++++.....-.+. ..++|.++.|+ +++.-+++ |-.-.
T Consensus 219 --dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~-~s~~EF~VvyGfMPA 294 (566)
T KOG2315|consen 219 --DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWS-PSGREFAVVYGFMPA 294 (566)
T ss_pred --ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEEC-CCCCEEEEEEecccc
Confidence 1335678776653 222222 3468888887444444444 47999999999 66754444 55677
Q ss_pred eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCccccccccccccccceeec
Q 015371 207 LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
++.|||++ +.++..+ ..++-+++-|+|.|++++.++.+ |.|-+||+.+.
T Consensus 295 kvtifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--------------------- 346 (566)
T KOG2315|consen 295 KVTIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--------------------- 346 (566)
T ss_pred eEEEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---------------------
Confidence 89999974 5555544 45777889999999999988774 78999999872
Q ss_pred ccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC------CCeEEEEECCCCceeEEEccCCCCe
Q 015371 284 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------DNSVYIYDLVSGAQVAKLDFHNAPV 357 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v 357 (408)
+.+..+..... .-.+|+|||.+|++++. |+.++||+. +|..++...-.. ..
T Consensus 347 -------------K~i~~~~a~~t--------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL 403 (566)
T KOG2315|consen 347 -------------KLIAKFKAANT--------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-EL 403 (566)
T ss_pred -------------hhccccccCCc--------eEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hH
Confidence 33344333321 11268999999999875 678999997 677665543222 56
Q ss_pred eeeeEeCC
Q 015371 358 RDCCWHPI 365 (408)
Q Consensus 358 ~~~~~~~~ 365 (408)
..+.|-|.
T Consensus 404 ~qv~W~P~ 411 (566)
T KOG2315|consen 404 LQVEWRPF 411 (566)
T ss_pred hheeeeec
Confidence 67777754
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.4e-12 Score=105.68 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=145.8
Q ss_pred CCCCEEEEEecCCeEEEEECCCCcceeeecC---cCCCceEEEEe------c-------------CCCCEEEEecCCCeE
Q 015371 151 TDGQELVAAGSDNFIYVYDLQANKCSLRIPA---HKSDVNTVCFA------D-------------ETGHLIFSGSDDSLC 208 (408)
Q Consensus 151 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~l~~~------~-------------~~~~~l~~~~~dg~i 208 (408)
|...++|....||.+++|+...++....+.. -.+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3456888899999999999999887766632 23444555553 1 234568888999999
Q ss_pred EEEeccccccCCccceeee--cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccc
Q 015371 209 KVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 286 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (408)
.+|++. .++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...
T Consensus 83 ~~ys~~----~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~------------------------- 133 (541)
T KOG4547|consen 83 LLYSVA----GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE------------------------- 133 (541)
T ss_pred EEEEec----CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-------------------------
Confidence 999964 555555554 6899999999999999999999999999999887
Q ss_pred cceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCC-
Q 015371 287 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI- 365 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~- 365 (408)
...++.+..... ...+.+++|||..+++++ +.|++||+++++.+..|.+|.++|.+++|-.+
T Consensus 134 ---------~~~~~~~~~~~~------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 134 ---------KVIIRIWKEQKP------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred ---------ceeeeeeccCCC------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 344455554442 223447889999999886 57999999999999999999999999999877
Q ss_pred ----CCeEE-eecCCCcEEEEeeCC
Q 015371 366 ----YPMLI-SSSWDCNIVRWEIPG 385 (408)
Q Consensus 366 ----~~~l~-s~~~dg~v~iw~~~~ 385 (408)
|.+++ +...+..+.+|-+..
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 56554 455677788998866
No 270
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=6.5e-11 Score=102.63 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=153.6
Q ss_pred eeeEecCCccEEEeec-CceEEEEEEecCceeeecccCceeEEEEcCCC------------CeEEEEeCCCcEEEEEcCC
Q 015371 5 REVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDG------------SFFVAASQESNIKVYNVDK 71 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~------------~~l~t~~~dg~i~iw~~~~ 71 (408)
.++.|+|.|-+....+ ...+.+....+..+.+.-|...|+.+.|.|-. -+||++...|.|.+||...
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 4678899887765543 44455556667777888999999999998731 2577788889999999987
Q ss_pred CeeEEEecccccceeeEEEEEeCC---CC-ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEE
Q 015371 72 NWKIQKDIETKALRWTITDTSLSP---DQ-RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV 147 (408)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 147 (408)
...+. ....+..++..++|-+ +. ..|++-....++.+|+..+++......... . ...|+
T Consensus 99 ~s~~~---~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~------------iLs~f 161 (1062)
T KOG1912|consen 99 ASVIN---WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--E------------ILSCF 161 (1062)
T ss_pred hhhhh---hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--c------------ceeee
Confidence 64443 3344555889999976 34 466666777899999999987643333221 1 46678
Q ss_pred EEcC-CCCEEEEEecCCeEEEEECCC-------CcceeeecCcCC----------------C---------ceEEEEecC
Q 015371 148 KFST-DGQELVAAGSDNFIYVYDLQA-------NKCSLRIPAHKS----------------D---------VNTVCFADE 194 (408)
Q Consensus 148 ~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~----------------~---------v~~l~~~~~ 194 (408)
.+.| |.+.+..-+..|.+.+.+.-. ++..+.-..|.. . ...++|+|.
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 8888 667777777778777776421 111111111111 0 123456744
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC--eEEEeecCCeEEEEeCCC
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR--YFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~ 261 (408)
-.+.++. .....+.++|++ -..++....-..+.+.-+.+-|+++ .|.+...||.+.+|--+.
T Consensus 242 ~rn~lfi-~~prellv~dle----~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 WRNILFI-TFPRELLVFDLE----YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceEEE-EeccceEEEcch----hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 4444444 446679999975 4444555444556666677766654 688999999999996554
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.49 E-value=2.2e-10 Score=98.92 Aligned_cols=263 Identities=13% Similarity=0.076 Sum_probs=160.8
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
+..+++++.+|.+.-+|..+++.+........... ... .++..+++++.++.+..+|..+++.........
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 56788888899999999988877665433332111 111 246778888889999999998887643332211
Q ss_pred eeecCCCCCccceEE-EEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc-----eEEEEecCCCCEEEEecCC
Q 015371 132 DFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGHLIFSGSDD 205 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l~~~~~d 205 (408)
.+.+ ... .+..++.++.+|.|+.+|.++++.+..+....... .+.... +..++.+..+
T Consensus 136 -----------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~ 199 (377)
T TIGR03300 136 -----------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAG 199 (377)
T ss_pred -----------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECCC
Confidence 1111 111 24467778889999999999998877765432211 112222 2467788888
Q ss_pred CeEEEEeccccccCCccceeeecc-c---C---CeEEEEecC--CCCeEEEeecCCeEEEEeCCCCcCcccccccccccc
Q 015371 206 SLCKVWDRRCFISKGRANGVLMGH-L---E---GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 276 (408)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~~-~---~---~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 276 (408)
|.+..+|++ .++.+...... . . ....+.-+| .+..+++++.+|.++.+|..+++.
T Consensus 200 g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~------------ 263 (377)
T TIGR03300 200 GKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV------------ 263 (377)
T ss_pred CEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE------------
Confidence 999999965 34333221100 0 0 000011111 245777788899999999977321
Q ss_pred ccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-CC
Q 015371 277 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-NA 355 (408)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~ 355 (408)
+....... ...+. .++..+++++.+|.++.+|..+++.+...... ..
T Consensus 264 ----------------------~W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 264 ----------------------LWKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred ----------------------EEeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 11111000 00111 23667888889999999999999887655321 22
Q ss_pred CeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 356 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
....... .+..|++++.||.|+++|..+++..
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 2233333 3568888999999999998876553
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.47 E-value=3.6e-10 Score=92.64 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=112.9
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCC-cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQES-NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.-.+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++.. .....- +.|.++..+|+|++++++.....+.+.|
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~l---g~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDL---GNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCc---cceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 3347888899999999988999999998 8999999887433 222222 3699999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC----eEEEEECCCCcceeeecCcCCCceEE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN----FIYVYDLQANKCSLRIPAHKSDVNTV 189 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~l 189 (408)
++++......... .+ -|+.+.|+|+++++|-+--+| .|+++|+..++....- ...+.=.+-
T Consensus 430 idngnv~~idkS~--~~------------lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsP 494 (668)
T COG4946 430 IDNGNVRLIDKSE--YG------------LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSP 494 (668)
T ss_pred ecCCCeeEecccc--cc------------eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCc
Confidence 9998865443322 12 499999999999999886654 6899999988754433 233334556
Q ss_pred EEecCCCCEEEEec
Q 015371 190 CFADETGHLIFSGS 203 (408)
Q Consensus 190 ~~~~~~~~~l~~~~ 203 (408)
+|. +++++|.--+
T Consensus 495 aFD-~d~ryLYfLs 507 (668)
T COG4946 495 AFD-PDGRYLYFLS 507 (668)
T ss_pred ccC-CCCcEEEEEe
Confidence 777 7787766543
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=8e-11 Score=97.09 Aligned_cols=283 Identities=13% Similarity=0.099 Sum_probs=175.6
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc-------
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA------- 107 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------- 107 (408)
.+..-.-++..++|||.|.+|++....| |.+|.-.....+.... .. .|..+.|+|++++|.+-+..+
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~~----~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-HP----DVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-cC----CceecccCcccceeeeeccCCccChhhc
Confidence 3444667899999999999999987765 9999877654333221 11 589999999999999875433
Q ss_pred --------EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE-EEEEcCCCCEEEEEecCCeEEEEECCCCcc-ee
Q 015371 108 --------IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGSDNFIYVYDLQANKC-SL 177 (408)
Q Consensus 108 --------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~ 177 (408)
.+.+||+.++............. -.. -+.|+-+.++++-- ....++|+++ ++.. ..
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~------------~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPY------------LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH 166 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcc------------cccceeeeeecchhhhhh-ccCeEEEEec-CCccccC
Confidence 48999999887644333222210 133 57888888777655 3467999997 3321 11
Q ss_pred eecC-cCCCceEEEEecC-CCCEEEE-----ecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec
Q 015371 178 RIPA-HKSDVNTVCFADE-TGHLIFS-----GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK 250 (408)
Q Consensus 178 ~~~~-~~~~v~~l~~~~~-~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 250 (408)
.+.. ....|....|+|. ++..|+. ....+.+++|.+. ....+....-....=..+.|.+.|++|++--.
T Consensus 167 p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp----~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 167 PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP----KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc----CCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 1211 1356788888854 3344443 4567889999864 33333332222333356778888887664321
Q ss_pred -----------CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 251 -----------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 251 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
...+++++++.. .+..... ....+++.+
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~-----------------------------------~i~V~~~------~~~pVhdf~ 281 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITER-----------------------------------SIPVEKD------LKDPVHDFT 281 (561)
T ss_pred EeeecccceeccceEEEEeeccc-----------------------------------ccceecc------ccccceeee
Confidence 234666666531 1111111 113445557
Q ss_pred ccCCCcEEEEee--CCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCC---CcEEEEeeCC
Q 015371 320 YSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD---CNIVRWEIPG 385 (408)
Q Consensus 320 ~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~ 385 (408)
|.|.++.+++.+ .+-.+.++|++.. ....+ ....=+.+.|+|.+++++.++-| |.+-+|+..+
T Consensus 282 W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 282 WEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 777787776654 6788999998655 33333 33444556788888877776654 6677777654
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=1.6e-09 Score=89.46 Aligned_cols=241 Identities=17% Similarity=0.152 Sum_probs=145.0
Q ss_pred EcCCCCeEEEEeC----------CCcEEEEEcCCCeeEEEecccccc----eeeEEEEEeCCCCceEEEee-c-CcEEEE
Q 015371 48 FSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKAL----RWTITDTSLSPDQRFLVYAS-I-CAIVNI 111 (408)
Q Consensus 48 ~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-~-dg~i~~ 111 (408)
+||||+.|+++.. +..|.+||..+.+.+..+...... ......++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999888755 678999999998777665543221 11344789999999999776 3 689999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC-Ccce-ee---ecC-----
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCS-LR---IPA----- 181 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~---~~~----- 181 (408)
.|+.+++.......... ..-...+++.. ++ -+.||......+.+ ++.. .. +..
T Consensus 133 vD~~~~kvv~ei~vp~~---------------~~vy~t~e~~~-~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v 195 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC---------------YHIFPTANDTF-FM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL 195 (352)
T ss_pred EECCCCcEEEEEeCCCC---------------cEEEEecCCcc-EE-EeecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence 99999876443332211 11111221221 11 12234333322211 1110 00 111
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc-CCccceeeec-------ccCCeEEEEecCCCCeEEEee----
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLMG-------HLEGITFIDSRRDGRYFISNG---- 249 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~---- 249 (408)
...+ .|.+.++.++++..+ |+|.+.|+..... .......+.. ..+...-++++++++.+.+..
T Consensus 196 ~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~ 270 (352)
T TIGR02658 196 INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA 270 (352)
T ss_pred ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc
Confidence 0122 445457888888777 9999999642111 1111111111 233445599999999887743
Q ss_pred ------cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC
Q 015371 250 ------KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323 (408)
Q Consensus 250 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (408)
..+.|.++|..+ .+.+..+... ...+.++++||
T Consensus 271 ~~thk~~~~~V~ViD~~t----------------------------------~kvi~~i~vG-------~~~~~iavS~D 309 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKT----------------------------------GKRLRKIELG-------HEIDSINVSQD 309 (352)
T ss_pred cccccCCCCEEEEEECCC----------------------------------CeEEEEEeCC-------CceeeEEECCC
Confidence 125799999877 2333333321 23456689999
Q ss_pred Cc-EEEEee-CCCeEEEEECCCCceeEEEc
Q 015371 324 QK-YIYTGS-SDNSVYIYDLVSGAQVAKLD 351 (408)
Q Consensus 324 ~~-~l~~~~-~dg~i~vwd~~~~~~~~~~~ 351 (408)
++ +|++.. .++.|.++|..+++.+..+.
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 99 777666 57889999999999998883
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=1e-12 Score=112.92 Aligned_cols=291 Identities=18% Similarity=0.173 Sum_probs=185.8
Q ss_pred eeEecCCccE--EEeecCceEEEEEEecCceeeeccc--CceeEEEEcCCC--CeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 6 EVNYSGRGRF--SAADSCHVLSRYLPVNGPWKVDGMN--SRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 6 ~~~~s~dg~~--~~~~~~~~~~~~~~~~~~~~l~~h~--~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
+++.+|-|+- +|+.....+..+-.+..+.+...|- -.|-.+.|+|.. .+-++......-.+|++..........
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 3455666653 3333333333333333333333443 347788898853 445555555567899987655445556
Q ss_pred ccccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
..++|...|+.+.|+|. ...+++++.|-.+..||+............-+. ....++|+-....+.+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-------------~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-------------AASQVKWNYKDPNVLA 175 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-------------cCceeeecccCcchhh
Confidence 67788889999999995 467889999999999999877653322222222 4678899886666777
Q ss_pred EecCCeEEEEECCCC-cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 159 AGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
.+....|.+||++.| .++..+++|...|+.++|+......+.+.+.||+|+.||..+. ...... ......+|..-.
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS--t~e~~~-~vtt~~piw~~r 252 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS--TTESKR-TVTTNFPIWRGR 252 (1081)
T ss_pred hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc--ccccce-eccccCcceecc
Confidence 777889999999765 5677788899999999998666678899999999999997522 222221 222334555555
Q ss_pred ecCCCCeEEEeec--CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEE
Q 015371 238 SRRDGRYFISNGK--DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 315 (408)
Q Consensus 238 ~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
+.|-|.-...--. +..+.+++-
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c-------------------------------------------------------- 276 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRC-------------------------------------------------------- 276 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccc--------------------------------------------------------
Confidence 5554331111111 111111111
Q ss_pred eeccccCCCcEEEEeeCCCeEEEEECCC-CceeEEEccCCCCeeeeeEeCC--------CC--eEEeecCCCcEEEEeeC
Q 015371 316 FSPEYSTAQKYIYTGSSDNSVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPI--------YP--MLISSSWDCNIVRWEIP 384 (408)
Q Consensus 316 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~--------~~--~l~s~~~dg~v~iw~~~ 384 (408)
+..-..|+..+ ..+++++.+|.+.|....|-.. .+ .|+|-+.|..+++|-+.
T Consensus 277 -----------------~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 277 -----------------ENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred -----------------cchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 12233455444 3678899999988877766432 22 79999999999999886
Q ss_pred C
Q 015371 385 G 385 (408)
Q Consensus 385 ~ 385 (408)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 4
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=1.2e-09 Score=94.34 Aligned_cols=261 Identities=13% Similarity=0.097 Sum_probs=156.2
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
++..++.++.++.++.+|..+++.+....... .+.+.-.. .+..++.++.+|.+..||..+++............
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 46678888889999999998887766543222 12211111 34567777889999999998887643322211000
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcC----CC------c-eEEEEecCCCCEE
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK----SD------V-NTVCFADETGHLI 199 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~------v-~~l~~~~~~~~~l 199 (408)
.. . ...+.... + ..++.+..++.+..+|.++++.+....... .. + .+..+ .+..+
T Consensus 179 -~~----~----~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~v 244 (377)
T TIGR03300 179 -TL----R----GSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQV 244 (377)
T ss_pred -ee----c----CCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEE
Confidence 00 0 00011111 2 367778888999999999998765432110 00 0 11112 24577
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
++++.+|.+..+|.. .++.+..... ....... ..+..+++++.+|.+..+|..+++..
T Consensus 245 y~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-------------- 302 (377)
T TIGR03300 245 YAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSEL-------------- 302 (377)
T ss_pred EEEEcCCEEEEEECC----CCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEE--------------
Confidence 888889999999964 4444433321 1112222 24667888888999999999774321
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCe-e
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV-R 358 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~ 358 (408)
........ ....+|.. .+..+++++.+|.|+++|..+++.+..++.+...+ .
T Consensus 303 --------------------W~~~~~~~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~ 355 (377)
T TIGR03300 303 --------------------WKNDELKY-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIAS 355 (377)
T ss_pred --------------------EccccccC-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcccc
Confidence 11100000 00011111 26788999999999999999999999888666543 3
Q ss_pred eeeEeCCCCeEEeecCCCcEEEE
Q 015371 359 DCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 359 ~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
...+. ++ .|+.++.||.|+.|
T Consensus 356 sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEE-CC-EEEEEeCCceEEEe
Confidence 33443 33 57788899999876
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.4e-11 Score=98.03 Aligned_cols=278 Identities=14% Similarity=0.137 Sum_probs=172.5
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec-----------CcEEEE
Q 015371 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-----------CAIVNI 111 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~ 111 (408)
-+-+.|||.|.||+|--.-| |.+|-=.+-..++.+ .|. .|.-+.|||..++|++-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45688999999999998876 999964443333322 232 4888999999999998652 257999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
||+.++............. ..-.-..||.|++++|.-.. ..|.||+..+..++..-.-.-..|....|
T Consensus 287 WDI~tG~lkrsF~~~~~~~-----------~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPY-----------LKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred EEccccchhcceeccCCCc-----------cccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCccc
Confidence 9999998754433321111 01234689999999988765 56999998765443332334567889999
Q ss_pred ecCCCCEEEEecCC-----CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec----------CCeEEE
Q 015371 192 ADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK----------DQTTKL 256 (408)
Q Consensus 192 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i 256 (408)
+ |.+++||-=... ..+.+-.+ +..+.+++-.-+.-.=..+.|..+|.+|+.--. -..+.|
T Consensus 355 s-P~~~llAYwtpe~~~~parvtL~ev----Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 355 S-PTSNLLAYWTPETNNIPARVTLMEV----PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred C-CCcceEEEEcccccCCcceEEEEec----CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence 9 667666643221 12344443 244444444334333345667778887765321 112334
Q ss_pred EeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC---C
Q 015371 257 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---D 333 (408)
Q Consensus 257 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---d 333 (408)
+.++... -++.. ......+...+|-|.|+.+++-+. .
T Consensus 430 frireKd---------------------------------Ipve~-------velke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 430 FRIREKD---------------------------------IPVEV-------VELKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEeeccC---------------------------------CCcee-------eecchheeeeeeccCCCeEEEEEccccc
Confidence 4443311 11111 112233455577788887776554 3
Q ss_pred CeEEEEECCC-C---ceeEEEccCCCCeeeeeEeCCCCeEEee---cCCCcEEEEeeCC
Q 015371 334 NSVYIYDLVS-G---AQVAKLDFHNAPVRDCCWHPIYPMLISS---SWDCNIVRWEIPG 385 (408)
Q Consensus 334 g~i~vwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~dg~v~iw~~~~ 385 (408)
.++.+|.+++ . +.+..+. ....+.+.|+|.|++++.+ |..|.+.++|...
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 5688998873 2 2334443 3557789999999987765 5678999999874
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=8.9e-10 Score=103.44 Aligned_cols=320 Identities=12% Similarity=0.127 Sum_probs=178.4
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC-------------C----------eeEEEec------------cc
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-------------N----------WKIQKDI------------ET 81 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-------------~----------~~~~~~~------------~~ 81 (408)
..-...|.|++||||+..||..+.++++.+-+-+- + ++..++. ..
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 34568899999999999999999998888765320 0 0000000 00
Q ss_pred c------c---ceeeEEEEEeCCCCceEEEeec---C---cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEE
Q 015371 82 K------A---LRWTITDTSLSPDQRFLVYASI---C---AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS 146 (408)
Q Consensus 82 ~------~---~~~~v~~~~~~~~~~~l~~~~~---d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (408)
. + ....-..++|-.||+++|+.+. . ..++||+-+ +....... ...+ --.+
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--~v~g------------Le~~ 261 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--PVDG------------LEGA 261 (928)
T ss_pred CCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--cCCC------------ccCC
Confidence 0 0 1223456889999999998774 2 478999876 33222111 1111 1347
Q ss_pred EEEcCCCCEEEEEec---CCeEEEEECCCCcceeee----cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 147 VKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 147 ~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
++|.|.|++||+... ...|.+|.- +|-....+ ......|..|.|+ .++..|+....|. |.+|-.. +
T Consensus 262 l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~----N 334 (928)
T PF04762_consen 262 LSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRS----N 334 (928)
T ss_pred ccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEee----C
Confidence 899999998888765 345666663 34333333 2456789999999 9999999987665 9999854 2
Q ss_pred Ccc--ceeee-cccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccc---cccccccccceeecccccceeec
Q 015371 220 GRA--NGVLM-GHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDN---SRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 220 ~~~--~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
... .+.+. .....+..+.|+|... .|...+.+|.+..+++.-........ ........|...+...+.... .
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a-~ 413 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA-V 413 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc-C
Confidence 221 12222 1223455599999544 56777766777665543211100000 000000001000000000000 0
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce--------eEEEc----------cCC
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--------VAKLD----------FHN 354 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~----------~~~ 354 (408)
.|+.-....+.- ...+...+|++++..+++-..||.|.+|....... ...+. ...
T Consensus 414 VPPPMs~~~l~~-------~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (928)
T PF04762_consen 414 VPPPMSSYELEL-------PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPL 486 (928)
T ss_pred CCchHhceEEcC-------CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccc
Confidence 011111111111 12234446777787799999999999998543221 11111 123
Q ss_pred CCeeeeeEeCCCCeEEeecCC---CcEEEEeeCCC
Q 015371 355 APVRDCCWHPIYPMLISSSWD---CNIVRWEIPGI 386 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d---g~v~iw~~~~~ 386 (408)
..+..++|..+..+++....+ +.+.++++...
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 487 GSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred ccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 457888998877766555543 67888888543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=6.7e-10 Score=106.27 Aligned_cols=271 Identities=10% Similarity=0.089 Sum_probs=157.7
Q ss_pred EEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEE
Q 015371 89 TDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIY 166 (408)
Q Consensus 89 ~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~ 166 (408)
..++++++ +..+++-+.++.|+++|........... ....+..-.......-.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45778775 5556666677889999986543211110 000000000000111224678999998887776654 56799
Q ss_pred EEECCCCcceeeecCc-----------------CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-
Q 015371 167 VYDLQANKCSLRIPAH-----------------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG- 228 (408)
Q Consensus 167 i~d~~~~~~~~~~~~~-----------------~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 228 (408)
++|..++. +.++.+. -.....++++|.++.++++.+.++.|++||... +. +..+.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~----g~-v~~~~G~ 723 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD----GV-TRVFSGD 723 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC----Ce-EEEEecC
Confidence 99987764 3322110 123467999944777888888899999999642 11 111111
Q ss_pred --------------ccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 229 --------------HLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 229 --------------~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.-.....++++|+++ ++++-+.++.|++||+.+........... ..+
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~----------~~~-------- 785 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP----------TFS-------- 785 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc----------ccC--------
Confidence 112356799999998 45555667899999987632110000000 000
Q ss_pred CCCcceeeeecccc--eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc-------------cCCCCee
Q 015371 294 PHDQSLATYKGHSV--LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-------------FHNAPVR 358 (408)
Q Consensus 294 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~ 358 (408)
.....+..... ..........++++++|+++++-+.++.|++||..++....... +.-....
T Consensus 786 ---~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 786 ---DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred ---cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000000000 00001112234677889988888889999999998776543221 1112567
Q ss_pred eeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 359 DCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 359 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.++++++|+++++-+.++.|++||+.++.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 89999999998888899999999998754
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=7.7e-11 Score=92.36 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=171.9
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC-ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
..++...|++...-|...-+++.+.|.++++|--.+. +.-+...... ..+++++.+.++...|++|
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-------------P~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-------------PSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-------------CCCceEeeeeccceEEEEE
Confidence 4455567888888888888999999999999964433 2211111111 2269999999999999999
Q ss_pred ecCCeEEEEECC----CCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 160 GSDNFIYVYDLQ----ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 160 ~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
-..|++.-+.+. .....+....|...+..+-|+ ....++++.+.|..+.---.+ .+..+..+.- ...-++
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~t~ 160 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPASA 160 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccCCC
Confidence 999999988664 344555667899999999999 778889999988766533322 2222211110 001111
Q ss_pred EEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEE
Q 015371 236 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 315 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
+.+.-. +...|...|.|..-.+... .-..+..+.+|.. .+
T Consensus 161 ~~~d~~--~~fvGd~~gqvt~lr~~~~--------------------------------~~~~i~~~~~h~~------~~ 200 (404)
T KOG1409|consen 161 LQFDAL--YAFVGDHSGQITMLKLEQN--------------------------------GCQLITTFNGHTG------EV 200 (404)
T ss_pred CceeeE--EEEecccccceEEEEEeec--------------------------------CCceEEEEcCccc------ce
Confidence 111111 3444555555555444331 1355677777774 34
Q ss_pred eeccccCCCcEEEEeeCCCeEEEEECCCCc-eeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 316 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 316 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
.+..|.+....+++|..|..+.+||+.-.+ ...++.+|.+.|..++.-+.-+.|++++.||.|.+|+++....+
T Consensus 201 ~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 201 TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 444778889999999999999999997553 45677899999999999888889999999999999999875443
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.9e-12 Score=107.80 Aligned_cols=287 Identities=11% Similarity=0.150 Sum_probs=181.5
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-eE---EEecccccceeeEEEEEeCCCCceEEEeecCcEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KI---QKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 109 (408)
..+.||+..|..++--.+.+-+++++.|.+|++|.+.... .+ ........|..+|.++.|-.+-++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 3567999999999888788889999999999999987531 11 1234456788899999999998888754 7899
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeec-----CcC
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIP-----AHK 183 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~ 183 (408)
.+||.--++...........+ ....|.++. +-+...++++ +...+|+++|.+..+....++ +..
T Consensus 807 HlWDPFigr~Laq~~dapk~~---------a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEG---------AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eeecccccchhHhhhcCcccC---------CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 999976554322111111111 111233332 1134444444 668999999999887665553 344
Q ss_pred CCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEE-EeCCCC
Q 015371 184 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL-WDIRKM 262 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~ 262 (408)
.-+.+++.. +.|+.++++-.+|.|.+.|.| +++.+..+..-.-....++ .|..+.|+....|.++.+ |..-.+
T Consensus 877 a~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 877 ALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred hheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 668899998 889999999999999999976 6776666654443333333 345566777777777777 764432
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
... ...+.......... . -|.-+++......+.+|--.
T Consensus 951 imh----------------------------------~q~kpppepahflq-----s---vgpSLV~a~~Gn~lgVYad~ 988 (1034)
T KOG4190|consen 951 IMH----------------------------------LQDKPPPEPAHFLQ-----S---VGPSLVTAQNGNILGVYADS 988 (1034)
T ss_pred eee----------------------------------eccCCCCcchhhhh-----c---cCceeEEeccCcEEEEEecc
Confidence 111 11111100000000 0 14557777666677777421
Q ss_pred C----CceeEEEc--cCCCCeeeeeEeCCCCeEEeecCCCcEEE
Q 015371 343 S----GAQVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 343 ~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
. ...+..++ ...+..++++--|-..-++.|.+.|.|.+
T Consensus 989 a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 989 AELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1 11122232 23456788888888777778888888875
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.36 E-value=5.4e-11 Score=89.62 Aligned_cols=201 Identities=14% Similarity=0.188 Sum_probs=121.3
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEE----------eCCCCceEEEeecCcEEEEE
Q 015371 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTS----------LSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~~l~~~~~dg~i~~w 112 (408)
|+.+.++.+- .|+++..++.+.......+.+........+ .++..+++ .+--++.++++..||.+.++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~-i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDG-IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccC-cCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 6667776543 466666666655554433322211111000 01122222 22235679999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-----CCeEEEEECCCCcceeeecCcCCCce
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
+.+.... .......... .-.+.++...++.+.++.. -+..+.|+++..+....-......|+
T Consensus 117 s~~~~~~-~~~~i~~~~~------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 117 STDKDLA-LMSRIPSIHS------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred echHHHh-hhhhcccccc------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccch
Confidence 8875211 1111111100 1222333334544444321 23455666654332221122234499
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+++-+|...+++++|+.||.+.+||.|+ ...+...+..|+.+|..+.|+| ++..|+++++||.+..||..+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn---~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARN---VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEccc---ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999988888999999999999999984 3566677889999999999998 567899999999999999875
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.35 E-value=3.5e-09 Score=81.58 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=131.1
Q ss_pred eEecCCccEEEeecCceEEEEEEecC-------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 7 VNYSGRGRFSAADSCHVLSRYLPVNG-------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~~~~~~~~~-------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
++.+.||+++|.-....+.---.... .+..+.-.-.=..++||||+.+||.+...|+|+++|+...+.. .+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcC
Confidence 56789999998766555432211111 1122233344567999999999999999999999998764322 211
Q ss_pred c----cccceeeEEEEEeCCC------CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE
Q 015371 80 E----TKALRWTITDTSLSPD------QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 80 ~----~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (408)
. .......|..|.|.+- ...|++-...|.++-|-+..+.... +.....+.+.. .....|.++.|
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~---y~e~hsfsf~~---~yp~Gi~~~vy 155 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG---YQENHSFSFSS---HYPHGINSAVY 155 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc---ceeeEEEEecc---cCCCceeEEEE
Confidence 1 1112346777878552 2246666778888877663321110 11111111111 12336999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE-EEecCCCe------EEEEeccccccCCcc
Q 015371 150 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSL------CKVWDRRCFISKGRA 222 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~------i~iwd~~~~~~~~~~ 222 (408)
+|..++|++|+.... +.+. -++....+++-........+. ++...|+. ..+|.+ ...+.
T Consensus 156 ~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~----~~~~~ 221 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI----PSFKF 221 (282)
T ss_pred cCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeec----cceee
Confidence 999998888875332 0000 011122233322221111111 11121211 122221 11111
Q ss_pred ceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 223 NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 223 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
..........|..|..+|||+.|++...+|.|.+|++.....
T Consensus 222 fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 222 FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 111123467899999999999999999999999999988543
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=5.9e-10 Score=84.57 Aligned_cols=268 Identities=10% Similarity=0.042 Sum_probs=160.7
Q ss_pred CCCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCC-----CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeee
Q 015371 60 QESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDF 133 (408)
Q Consensus 60 ~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (408)
....+-+|++-++. .+... -..+.|.| ...+|+.|+..|...+|...+.+......-....+
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~---------y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~--- 117 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEF---------YTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNND--- 117 (344)
T ss_pred ceeeeEeccccCCchhhEEe---------eecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccc---
Confidence 44567778776542 11111 13355555 45689999999999999998765422111111111
Q ss_pred ecCCCCCccceEEEE-EcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEe
Q 015371 134 SADGDEDEFGIFSVK-FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 212 (408)
Q Consensus 134 ~~~~~~~~~~i~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd 212 (408)
|+-+. +......+..++.|.++++.+++.+..........-.+.+++++ +++.++++.+....|..|.
T Consensus 118 ----------v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 118 ----------VTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYS-NDPSWGSSVGDSRRVFRYA 186 (344)
T ss_pred ----------hhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEc-CCCceEEEecCCCcceEEE
Confidence 11111 01122346777889999999887654333332111237889999 9999999999999999999
Q ss_pred ccccccCCccce-eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 213 RRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
+.. .....+. .....++.=.+..|+.....++++..||++.|||++.....-.
T Consensus 187 id~--~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~------------------------ 240 (344)
T KOG4532|consen 187 IDD--ESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA------------------------ 240 (344)
T ss_pred eCC--ccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh------------------------
Confidence 862 2222333 2333445556788999999999999999999999998432111
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCC--cEEEEeeCCCeEEEEECCCCceeEEEcc-------CC-CCeeeee
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ--KYIYTGSSDNSVYIYDLVSGAQVAKLDF-------HN-APVRDCC 361 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~-~~v~~~~ 361 (408)
..-.+-..|.. ....+ .|++.| .+|+..-.-+.+.+.|+++++..+.+.. |. ..|..-.
T Consensus 241 -----~~sstrp~hnG--a~R~c----~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 241 -----EISSTRPHHNG--AFRVC----RFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred -----hhcccCCCCCC--ceEEE----EecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 00111111221 12222 344333 3555555668899999999876655532 22 2377778
Q ss_pred EeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 362 WHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 362 ~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
|+.++.-+.+.+++ .+.-|++.+..+
T Consensus 310 f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 310 FNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred ccCCCcccccccch-hhheeeccccce
Confidence 88877766666554 455666655433
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.9e-11 Score=95.37 Aligned_cols=319 Identities=12% Similarity=0.067 Sum_probs=199.7
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec-CcEEEEEECCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGS 116 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~ 116 (408)
-|.+.|+.+.-+ ..+++.+++.||.++.|.-..-..+.-......|...|.+++.+-++..+.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777776554 4679999999999999986543444445556677778999999999999999777 99999999987
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-C-CEEEEE-ecCCeEEEEECCCCcce--eeecCcCCCceEEEE
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-G-QELVAA-GSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCF 191 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~l~~~-~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~ 191 (408)
-.......+....+ ..+...++. . ..++++ -.++.+.++|-....+. ..-.-|..+|.++.+
T Consensus 86 ~DminmiKL~~lPg-------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred cchhhhcccccCCC-------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 66543332222211 112222222 1 133333 34789999997654422 223459999999999
Q ss_pred ecCCCCEEEEecCCCeEEEEecccccc--CC---------ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFIS--KG---------RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
+ +.++.+++....|.|..|....... .. ..+..+........++.|+|++..+.+-+.|..|++++++
T Consensus 153 ~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 153 N-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred e-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 9 8889999999999999998641000 01 1111222345667899999999999999999999999999
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
++...+............... .+......+.. ....-+.++.+... . .....|...|++|+-|+-=| |++.+
T Consensus 232 tGklvqeiDE~~t~~~~q~ks-~y~l~~VelgR-Rmaverelek~~~~-~----~~~~~fdes~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKS-PYGLMHVELGR-RMAVERELEKHGST-V----GTNAVFDESGNFLLYGTILG-IKVIN 303 (558)
T ss_pred cchhhhhhhccchhhhhcccc-ccccceeehhh-hhhHHhhHhhhcCc-c----cceeEEcCCCCEEEeeccee-EEEEE
Confidence 987766655444433322221 00000000000 00000111112211 1 11224666799999998776 89999
Q ss_pred CCCCceeEEEcc------------------C---------CCCeeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 341 LVSGAQVAKLDF------------------H---------NAPVRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 341 ~~~~~~~~~~~~------------------~---------~~~v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
+.++.+++.+-. + .+++ +.+.+|-.+++++-....++++
T Consensus 304 ~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 304 LDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEE
Confidence 988877665521 1 1111 2355555566677677778888
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.9e-09 Score=89.18 Aligned_cols=209 Identities=13% Similarity=0.077 Sum_probs=123.4
Q ss_pred eEEEEEeCCCCce-EEEeecC---cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-
Q 015371 87 TITDTSLSPDQRF-LVYASIC---AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 161 (408)
Q Consensus 87 ~v~~~~~~~~~~~-l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 161 (408)
......|+|||+. ++..+.+ ..|.++|+.+++...+..... ......|+|||+.++....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g---------------~~~~~~~SPDG~~la~~~~~ 253 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG---------------MLVVSDVSKDGSKLLLTMAP 253 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC---------------cEEeeEECCCCCEEEEEEcc
Confidence 5778999999985 6644433 568899998887655443221 2556789999987765532
Q ss_pred --CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCC--eEEEEeccccccCCccceeeecccCCeEEE
Q 015371 162 --DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWDRRCFISKGRANGVLMGHLEGITFI 236 (408)
Q Consensus 162 --dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 236 (408)
+..|+++|+.+++. ..+..+........|+ |+++.|+..+ ..+ .|.+.|+. .+.... +..... ...
T Consensus 254 ~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~r-lt~~g~--~~~ 324 (419)
T PRK04043 254 KGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVEQ-VVFHGK--NNS 324 (419)
T ss_pred CCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeEe-CccCCC--cCc
Confidence 45799999987764 3444344334566899 7777655554 344 46666653 232212 211111 124
Q ss_pred EecCCCCeEEEeecC---------CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccc
Q 015371 237 DSRRDGRYFISNGKD---------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 307 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
.|+|+|+.|+..+.. ..|.+.|+.... ...+....
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----------------------------------~~~LT~~~- 368 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----------------------------------IRRLTANG- 368 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------------------------------eEECCCCC-
Confidence 899999988776653 256666765521 11111111
Q ss_pred eeeEEEEEeeccccCCCcEEEEeeCCC---eEEEEECCCCceeEEEccCCCCeeeeeE
Q 015371 308 LRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (408)
....|.|+|||+.|+..+.++ .+.+.++. +.....+....+.+...+|
T Consensus 369 ------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 369 ------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred ------CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCCCC
Confidence 112467999999887766532 36677774 4444444444445554443
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=1.5e-08 Score=97.23 Aligned_cols=214 Identities=13% Similarity=0.135 Sum_probs=134.8
Q ss_pred ceeEEEEcCCCCeEEEEe-CCCcEEEEEcCCCeeEEEecccc--------------cceeeEEEEEeCC-CCceEEEeec
Q 015371 42 RVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETK--------------ALRWTITDTSLSP-DQRFLVYASI 105 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~-~~~~l~~~~~ 105 (408)
....++++++++.|+++. .++.|+++|..++. +..+.... ..-.....++++| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 357899999888666654 45679999987753 32221100 0011346799999 5556666677
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeec--CCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeee---
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSA--DGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRI--- 179 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~--- 179 (408)
++.|++||..++....... ..... .... .....-.....++++|+++.|+++ +.++.|++||+.++......
T Consensus 704 ~~~I~v~d~~~g~v~~~~G-~G~~~-~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSG-DGYER-NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEEEEec-CCccc-cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 8899999987765421110 00000 0000 000011246779999999866555 45689999999876532111
Q ss_pred ----------cC--------cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee--------------
Q 015371 180 ----------PA--------HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------------- 227 (408)
Q Consensus 180 ----------~~--------~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------- 227 (408)
.. .-.....++++ ++++++++-+.++.|++||.. .+.. ..+.
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~----tg~v-~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPA----TKRV-TTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECC----CCeE-EEEeccCCcCCCCCcccc
Confidence 00 01134688898 788899999999999999964 2221 1111
Q ss_pred cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 228 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
+.-.....++++++|+++++-+.++.|++||+++...
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1223567899999999988888899999999987543
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.31 E-value=1.6e-08 Score=78.01 Aligned_cols=240 Identities=16% Similarity=0.144 Sum_probs=133.1
Q ss_pred EEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC
Q 015371 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 170 (408)
Q Consensus 91 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 170 (408)
++.+.+|+.||+. .|..|.+=....+-..........+ +..-.=..++|+||+..||.+...|+|+++|+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpk---------D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl 72 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPK---------DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDL 72 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCC---------CCCchheEEEECCCCcEEEEEcCCCeEEEEec
Confidence 4567788887765 3556665544332211111111111 11114678999999999999999999999999
Q ss_pred CCCcceeeecC-------cCCCceEEEEecCC-----CCEEEEecCCCeEEEEecccc-ccCCccceeee---cccCCeE
Q 015371 171 QANKCSLRIPA-------HKSDVNTVCFADET-----GHLIFSGSDDSLCKVWDRRCF-ISKGRANGVLM---GHLEGIT 234 (408)
Q Consensus 171 ~~~~~~~~~~~-------~~~~v~~l~~~~~~-----~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~i~ 234 (408)
...+ +..+.. -..+|..|.|.+.. ...|++-..+|.++-|-+... ....+....+. .+...|.
T Consensus 73 ~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 73 MGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred ccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 7533 333321 23567777776433 234666667787777765211 11222223322 2467899
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
++.++|..++|++|+.... +....... .--+..++--
T Consensus 152 ~~vy~p~h~LLlVgG~~~~------~~~~s~a~----------------------------~~GLtaWRiL--------- 188 (282)
T PF15492_consen 152 SAVYHPKHRLLLVGGCEQN------QDGMSKAS----------------------------SCGLTAWRIL--------- 188 (282)
T ss_pred EEEEcCCCCEEEEeccCCC------CCcccccc----------------------------ccCceEEEEc---------
Confidence 9999999998888775432 00000000 0000000000
Q ss_pred EeeccccCCCcEEEEeeCCC------eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 315 YFSPEYSTAQKYIYTGSSDN------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.-+|..+.+ +...|+ +-.+|.+-+.+...........|..|..||||+.||+...+|.|.+|++++...
T Consensus 189 ----~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 189 ----SDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ----CCCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 111111111 111111 113333333222222223466899999999999999999999999999998655
Q ss_pred C
Q 015371 389 A 389 (408)
Q Consensus 389 ~ 389 (408)
.
T Consensus 264 ~ 264 (282)
T PF15492_consen 264 Q 264 (282)
T ss_pred h
Confidence 3
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.29 E-value=7.2e-11 Score=94.48 Aligned_cols=164 Identities=21% Similarity=0.222 Sum_probs=110.0
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc---EEEEEECCCCc
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVNIVDVGSSA 118 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~ 118 (408)
.+..+..++++++||.+..+....++++....+..+..........-+++.|..+......+..-| .+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344566788999999998888888888766533112211111122344555555555554444333 44444443322
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCCCceEEEEecCCCC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGH 197 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~ 197 (408)
.. ..- +|-..+..++|+||+++|+++..|..|++-....-..+..+ -+|+..|..++.. ++.
T Consensus 144 ~~---~~l------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~ 206 (390)
T KOG3914|consen 144 CE---PIL------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNY 206 (390)
T ss_pred cc---hhh------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCc
Confidence 21 111 23446999999999999999999999999988766555555 5799999999997 455
Q ss_pred EEEEecCCCeEEEEeccccccCCccceee
Q 015371 198 LIFSGSDDSLCKVWDRRCFISKGRANGVL 226 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 226 (408)
.|++|+.|+++++||++ +++.+..+
T Consensus 207 ~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred eeeecCCCCcEEEEecc----cCCccccc
Confidence 69999999999999976 56655443
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=3.1e-11 Score=94.65 Aligned_cols=169 Identities=19% Similarity=0.297 Sum_probs=126.2
Q ss_pred EEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEE
Q 015371 157 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 236 (408)
++.+.+..|-+-|++++.. +.+. ..+.|.++.|. ..+++++.|..+|.|..+|+|.............-|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 4445577788999988753 3344 57889999998 7789999999999999999985433333333444588999999
Q ss_pred EecC-CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEE
Q 015371 237 DSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 315 (408)
Q Consensus 237 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
..-. ++++|++.+.+|+|++||++..++ ...+..+++|..........
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeeecccccccccccc
Confidence 8766 788999999999999999998443 23478888887655444332
Q ss_pred eeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCC----CCeeeeeEe
Q 015371 316 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN----APVRDCCWH 363 (408)
Q Consensus 316 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~ 363 (408)
..+....+++++.|...+||.++.+..+.++.... ..+.+++|.
T Consensus 354 ----v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 354 ----VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ----cccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 34457788889999999999999999998886432 234455553
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=2e-10 Score=89.01 Aligned_cols=269 Identities=15% Similarity=0.165 Sum_probs=163.3
Q ss_pred eeEEEEEeCCCCceEEEeecCcEEEEEECCCCc---eeeeeeeeeeeeeeeecC-CCCCccceEEEEEcCCC--CEEEEE
Q 015371 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSA---RESLANVTIHKGLDFSAD-GDEDEFGIFSVKFSTDG--QELVAA 159 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~--~~l~~~ 159 (408)
..|+++.|...|.+|++|...|.|.++.-+... .+....++.+.. .|... .-+-...|..+.|..++ ..++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-EFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc-chhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 369999999999999999999999999765443 111122222221 11110 01112257888887654 356677
Q ss_pred ecCCeEEEEECCCCc-------------------ce-----------------------eee-cCcCCCceEEEEecCCC
Q 015371 160 GSDNFIYVYDLQANK-------------------CS-----------------------LRI-PAHKSDVNTVCFADETG 196 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~-------------------~~-----------------------~~~-~~~~~~v~~l~~~~~~~ 196 (408)
+.|.+|++|.+.... ++ +.+ ..|...|.++.|+ .+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cch
Confidence 789999999875330 00 001 3567778899998 666
Q ss_pred CEEEEecCCCeEEEEeccccccCCccceeeecc-----cCCeEEEEecCC-CCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
..++++ .|-.|.+|++....... .+..++.| ..-|++..|+|. ...+...+..|.|++-|++.........+
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 666654 57789999976322111 12222333 345788889985 45677778899999999985321110000
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC-ceeEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAK 349 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~ 349 (408)
.. .....-..+......+..+....|+++|+||++-+. -+|++||++.. .++.+
T Consensus 263 lf------------------------e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 263 LF------------------------ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred hh------------------------hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 00 000000001111222344555679999999988754 47999999754 56777
Q ss_pred EccCC------------CCee---eeeEeCCCCeEEeecCCCcEEEEee
Q 015371 350 LDFHN------------APVR---DCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 350 ~~~~~------------~~v~---~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+..|. ..|. .+.||-|.+.+++|+..+..-++-.
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 75542 2332 3678888888888888777777753
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=2.6e-09 Score=81.19 Aligned_cols=196 Identities=15% Similarity=0.066 Sum_probs=128.1
Q ss_pred CCCEEEEEecCCeEEEEECCCCcceeee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 152 DGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
.-.+|+.|+..|...+|...+.+....+ ..|...|+-+.=.-....-+..++.|.++++.++. .........-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~----~~s~~~~~h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS----GDSNKFAVHNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe----cCcccceeeccc
Confidence 3457999999999999999866543332 33444332221100223346677888888888864 111111111111
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
-.+.++.+++|++++++.+....|..|.+..... ..........
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------------------------y~~~~~~a~t---- 202 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------------------------YIENIYEAPT---- 202 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccc--------------------------------eeeeeEeccc----
Confidence 2378899999999999999999999999876221 1111111111
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE-----EccCCCCeeeeeEeCCCC--eEEeecCCCcEEEEee
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-----LDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEI 383 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~ 383 (408)
...-|...|+.....+|++..||++.|||++....... -..|.+.+..+.|++.|. +|+-.-.-+.+.+-|+
T Consensus 203 -~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 203 -SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred -CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 02234456888889999999999999999987643322 235889999999998776 5555555678999999
Q ss_pred CCCCC
Q 015371 384 PGIGE 388 (408)
Q Consensus 384 ~~~~~ 388 (408)
++...
T Consensus 282 R~~~~ 286 (344)
T KOG4532|consen 282 RNYVN 286 (344)
T ss_pred ccCce
Confidence 88765
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.4e-08 Score=87.72 Aligned_cols=199 Identities=11% Similarity=0.036 Sum_probs=120.7
Q ss_pred ceeeecccCceeEEEEcCCCCe-EEEEeC---CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-c--
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSF-FVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-I-- 105 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~-l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-- 105 (408)
++.+.... .+....|||||+. ++..+. +..|+++|+.+++... +....+ ......|+|||+.|+... .
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g---~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQG---MLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCC---cEEeeEECCCCCEEEEEEccCC
Confidence 34344333 7788999999985 554433 3568999988774433 222222 455678999998877543 2
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceeeecCc
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAH 182 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~ 182 (408)
+..|.++++.++....+..... ......|+|||+.|+..+.. ..|+++|+.+++.......
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~---------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~- 319 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPG---------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH- 319 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCC---------------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence 3468888887775443322111 12345799999988877642 2789999988775433321
Q ss_pred CCCceEEEEecCCCCEEEEecCC---------CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC-
Q 015371 183 KSDVNTVCFADETGHLIFSGSDD---------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ- 252 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~- 252 (408)
... ...|+ |+++.|+..+.. ..|.+.|+. .+. ...+... .......|+|||+.++....++
T Consensus 320 g~~--~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~----~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 320 GKN--NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTN----SDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred CCc--CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECC----CCC-eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 111 24899 788877665543 256777753 222 2333332 2333588999999877665432
Q ss_pred --eEEEEeCCC
Q 015371 253 --TTKLWDIRK 261 (408)
Q Consensus 253 --~i~iwd~~~ 261 (408)
.+.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 255556544
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.22 E-value=7.8e-08 Score=77.67 Aligned_cols=222 Identities=16% Similarity=0.175 Sum_probs=137.0
Q ss_pred EEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc-CCCCEEEEEecCCeEEE
Q 015371 90 DTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS-TDGQELVAAGSDNFIYV 167 (408)
Q Consensus 90 ~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i 167 (408)
++.|.+ ++.++++-...+.|..|+..++........ ....+++. +++ .++++...+ +.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-----------------~~~G~~~~~~~g-~l~v~~~~~-~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-----------------GPNGMAFDRPDG-RLYVADSGG-IAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-----------------SEEEEEEECTTS-EEEEEETTC-EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-----------------CCceEEEEccCC-EEEEEEcCc-eEE
Confidence 467888 666666666789999999988765331111 25566777 565 455555544 566
Q ss_pred EECCCCcceeeecC-----cCCCceEEEEecCCCCEEEEecCC--------CeEEEEeccccccCCccceeeecccCCeE
Q 015371 168 YDLQANKCSLRIPA-----HKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 168 ~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
+|..+++....... .....+.+++. +++++.++.... |.|..++. .++ .......-...+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~~~~~pN 137 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDP-----DGK-VTVVADGLGFPN 137 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEET-----TSE-EEEEEEEESSEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECC-----CCe-EEEEecCccccc
Confidence 69988865443322 33567889999 788877765543 45666663 222 333334456678
Q ss_pred EEEecCCCCeEE-EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEE
Q 015371 235 FIDSRRDGRYFI-SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 313 (408)
Q Consensus 235 ~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
.++|+|+++.|+ +-+..+.|..+++......... .+.+..+.... .
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~------g 184 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP------G 184 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS------C
T ss_pred ceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC------c
Confidence 999999998765 5566788888888642210000 01111111111 1
Q ss_pred EEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEe-CCCCeEEe
Q 015371 314 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLIS 371 (408)
Q Consensus 314 ~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s 371 (408)
..-.+++..+|++.++....+.|.++|.. |+.+..+......+++++|. ++.+.|+.
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 11223566789988888889999999976 99888887665689999994 56554443
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=1.7e-09 Score=86.89 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=110.0
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCce--eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC-
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSAR--ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN- 163 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 163 (408)
.+..+..+++++++|++..+....+++...... +........+ ..+++.|..+.....++..-|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-------------~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-------------RPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-------------CcceeeeeeccceEEEEeecCC
Confidence 355567788899999988888877777654432 1111111111 244555555555555554444
Q ss_pred --eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 164 --FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 164 --~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
.+.+|....+. ...+-+|-..++.++++ +|+++|+++..|..|++-... .......-..||..-|..++..++
T Consensus 131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp---a~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 131 VYSFDILSADSGR-CEPILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP---ATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ceeeeeecccccC-cchhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC---cccchhhhccccHhheeeeeeccC
Confidence 45555554443 33456799999999999 899999999999999997753 223333345679999999999864
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
..|+++|.|+++++||+++++..
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCcc
Confidence 55899999999999999996654
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=3.6e-10 Score=85.28 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=104.8
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec-----CcE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-----CAI 108 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~ 108 (408)
+.+..|.++-.+-+.+--++.++++..||.+.+.+.+........... .|. .-.+.+....++.+.++.. -+.
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPS-IHS-GSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccc-ccc-cccccceeecccEEecCCcceEeeccc
Confidence 445556655555555666788999999999999997653211111110 010 1122233334554544321 223
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcce-eeecCcCCCc
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSDV 186 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v 186 (408)
.+.|++...+..... .+ ....|.+++-+|. ...+++|+.||.+-+||.+..... ..+..|+.++
T Consensus 161 ~~a~~~~p~~t~~~~----~~----------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPS----KK----------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred eeeeccccccccccc----cc----------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 445555433221111 00 1114888888884 456777888999999999887543 3457899999
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
..+-|+|.++..|+++++||.+-.||..
T Consensus 227 ~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 227 WEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hheeccCCCchheeEecCCCcEEEEcCC
Confidence 9999999999999999999999999954
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.2e-09 Score=86.59 Aligned_cols=263 Identities=16% Similarity=0.106 Sum_probs=168.7
Q ss_pred ceeeEEEEEeCCCCceEEEeecCcEEEEEECCC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-
Q 015371 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 161 (408)
Q Consensus 84 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 161 (408)
|...|+.+ +....+++.+++.||.++.|.-.. ........+..|.. .|.+++.+-++.++.+.+.
T Consensus 8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~------------~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG------------VILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH------------HHHhhhccccceeEeeccCc
Confidence 44445544 444678999999999999997654 23333333333333 6888999999998998777
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCC----CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG----HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
|..++++|+++-..+..++. ......+.|....+ .+-++.-.+|.+.++|-+ ....+....-.-|..+|..+.
T Consensus 75 Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--GDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred ccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--CCcCccceecccccCceEEEE
Confidence 99999999987765543332 11112223331222 233334467899999965 233345555566999999999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
+.+-+..+++....|.|..|.....-. .......|.. .+...+..+.... ....+
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~q-----fPr~~l~~~~--------------K~eTdLy~f~K~K------t~pts 206 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQ-----FPRTNLNFEL--------------KHETDLYGFPKAK------TEPTS 206 (558)
T ss_pred eeccccceeeccccceeEeecCCCccc-----Cccccccccc--------------cccchhhcccccc------cCccc
Confidence 999999999999999999999874110 0000011100 0011111111111 12234
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc--------------------------------CC-CCeeeeeEeC
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--------------------------------HN-APVRDCCWHP 364 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------------------~~-~~v~~~~~~~ 364 (408)
..|+|+|..+.+-+.|..|++++.++++.++.+.. |. ..-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 47889999999999999999999999877554421 21 1335578888
Q ss_pred CCCeEEeecCCCcEEEEeeCCCCC
Q 015371 365 IYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 365 ~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+++|+-++-=| |++.++.+..-
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeE
Confidence 899998887654 78888876544
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=6.1e-10 Score=93.24 Aligned_cols=243 Identities=12% Similarity=0.131 Sum_probs=157.3
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee-----eeeeeeeeeeeeeecCCCCCccceEEEEEcCCC
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE-----SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG 153 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 153 (408)
....+|...|..++--.+.+.+++++.|++|++|.+...... ....+. .|..+|.++.|-.+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~------------aHkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ------------AHKKPIHDIGFLADL 796 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh------------hccCcccceeeeecc
Confidence 345567777888877778888999999999999998754321 122222 345589999999998
Q ss_pred CEEEEEecCCeEEEEECCCCcceeeec--CcCCCceEEEEecC-CCCEEEEe-cCCCeEEEEeccccccCCccceee---
Q 015371 154 QELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCFADE-TGHLIFSG-SDDSLCKVWDRRCFISKGRANGVL--- 226 (408)
Q Consensus 154 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~--- 226 (408)
++++++ ||.|.+||.--+.++..+. ...+.+..+...+. +..++++| +...+|+++|.| .......+
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVc 870 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR----SCEWTCELKVC 870 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc----cccceeeEEec
Confidence 888765 7899999987777665442 12233333333322 44455555 778999999977 44433333
Q ss_pred --ecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec
Q 015371 227 --MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 304 (408)
Q Consensus 227 --~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
.+...-+.+++..+.|+.++.+-.+|.|.+.|.+++. .+..+..
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------------------------vINswrp 916 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------------------------VINSWRP 916 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------------------------eeccCCc
Confidence 2345668899999999999999999999999999843 2322222
Q ss_pred ccceeeEEEEEeeccccCCCcEEEEeeCCCeEEE-EECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 305 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI-YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
-.-. ... --.|..+.++....|.++.+ |..-++....+.+....+..-+. .-|.-|+++.....+.+|.
T Consensus 917 mecd------llq-laapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 917 MECD------LLQ-LAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ccch------hhh-hcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 1100 000 01233566777777888888 88777766555554433332221 2355677776666677774
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=2.8e-08 Score=86.90 Aligned_cols=272 Identities=13% Similarity=0.106 Sum_probs=174.1
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC------------C
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG------------Q 154 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~ 154 (408)
.-.++.|+|.| .||.|+ ...|.+.|..+-+. +..+..|+. .|+.+.|.|.. -
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~--iqsie~h~s------------~V~~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQL--IQSIELHQS------------AVTSVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhh--hhccccCcc------------ceeEEEeccCCCchhccCccccce
Confidence 46678899877 566665 45677888766544 333333333 69999998731 2
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecC--CC-CEEEEecCCCeEEEEeccccccCCccceeeecccC
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE--TG-HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 231 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 231 (408)
.|+++.-.|.|.+||...+..+..+..|..++..++|-+. +. .+|++-....++.+|+.. +++..........
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKFWKYDYSHE 156 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCceeeccccCCc
Confidence 5667777899999999999988899999999999999842 23 567777778899999853 6776666665566
Q ss_pred CeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 232 GITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 232 ~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
...++.+.| |.+.+...+..|.+.+-+.-.........+..+.... .............+.....-+.. ..
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd-----~Sdl~~lere~at~ns~ts~~~s---a~ 228 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD-----HSDLAHLERETATGNSTTSTPAS---AY 228 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC-----ccchhhhhhhhhccccccCCCcc---hh
Confidence 677788888 5667777777888877766543322211111000000 00000000000000000000000 00
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCC--eEEeecCCCcEEEEeeCCC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~~ 386 (408)
.+..+...+|+|.-+-++.......+.++|++-..++....-..+.+.-+.|-|+.+ .|+..-.||.+.+|--...
T Consensus 229 fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 000112235667666666666777899999998888888877777777888888876 7999999999999987653
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=5.4e-10 Score=96.64 Aligned_cols=226 Identities=18% Similarity=0.260 Sum_probs=150.7
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC--CEEEEEecCCe
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG--QELVAAGSDNF 164 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~ 164 (408)
.+.++..+|.|+-++.++.-| +.+.|+...-....... |.. .-.+-.+.|+|.. .+-++......
T Consensus 26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~--h~t----------pw~vad~qws~h~a~~~wiVsts~qk 92 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH--HIT----------PWQVADVQWSPHPAKPYWIVSTSNQK 92 (1081)
T ss_pred cccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee--ccC----------cchhcceecccCCCCceeEEecCcch
Confidence 678899999999999998777 44666655432211111 100 0136678888743 34444444555
Q ss_pred EEEEECCC---CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 165 IYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 165 i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
-.+|++.. ......+.+|...|+.+.|+|.....+++++.|-.+..||+| ....++.....-......+.|+-.
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r---Sp~~p~ys~~~w~s~asqVkwnyk 169 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR---SPHRPFYSTSSWRSAASQVKWNYK 169 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeecc---CCCcceeeeecccccCceeeeccc
Confidence 66898753 333445678999999999999999999999999999999997 345555555555566778889875
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
...+.+.+..+.|++||++.+. .++..+++|..... .++|.
T Consensus 170 ~p~vlasshg~~i~vwd~r~gs---------------------------------~pl~s~K~~vs~vn------~~~fn 210 (1081)
T KOG0309|consen 170 DPNVLASSHGNDIFVWDLRKGS---------------------------------TPLCSLKGHVSSVN------SIDFN 210 (1081)
T ss_pred CcchhhhccCCceEEEeccCCC---------------------------------cceEEecccceeee------hHHHh
Confidence 5556666677789999999843 55566666542222 22221
Q ss_pred C-CCcEEEEeeCCCeEEEEECCCCce-eEEEccCCCCeeeeeEeCCCC
Q 015371 322 T-AQKYIYTGSSDNSVYIYDLVSGAQ-VAKLDFHNAPVRDCCWHPIYP 367 (408)
Q Consensus 322 ~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 367 (408)
. ....+.+++.||+|++||...... -........+|..-.+-|-|.
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 1 134678889999999999865422 222223456788778888766
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=7.6e-07 Score=77.36 Aligned_cols=264 Identities=10% Similarity=0.069 Sum_probs=152.3
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEE-EEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
+..++.++.+|.++-+|.++++.+.+...... +.+ ... .+..++++..++.+..+|..+++.......... .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~----~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~ 192 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE----ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-S 192 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc----eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-c
Confidence 45677788899999999999877665433221 211 111 244566777889999999999876443332110 0
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCC----C---ceEEEEec-CCCCEEEEe
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS----D---VNTVCFAD-ETGHLIFSG 202 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---v~~l~~~~-~~~~~l~~~ 202 (408)
. .. .....++ . .+..++.++.+|.+..+|.++++.+........ . ...+.-+| -.+..++.+
T Consensus 193 ~--~~--~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~ 262 (394)
T PRK11138 193 L--TL--RGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL 262 (394)
T ss_pred c--cc--cCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence 0 00 0001111 1 123567777899999999999987665431110 0 00111111 124566777
Q ss_pred cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceee
Q 015371 203 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 282 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
+.+|.+..+|.. .++.+-... ......+.. .+..++.++.+|.+..+|..++.......
T Consensus 263 ~~~g~l~ald~~----tG~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~------------- 321 (394)
T PRK11138 263 AYNGNLVALDLR----SGQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS------------- 321 (394)
T ss_pred EcCCeEEEEECC----CCCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc-------------
Confidence 788999999965 444332221 111112222 35667778889999999987743211100
Q ss_pred cccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCee-eee
Q 015371 283 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCC 361 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~ 361 (408)
... .. ...+|.. .+.+|+.++.+|.|++.|..+|+.+...+.....+. ...
T Consensus 322 ------------------~~~-~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~ 373 (394)
T PRK11138 322 ------------------DLL-HR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPV 373 (394)
T ss_pred ------------------ccC-CC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCE
Confidence 000 00 0011111 156788899999999999999998887764433333 223
Q ss_pred EeCCCCeEEeecCCCcEEEEee
Q 015371 362 WHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 362 ~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+. +..|+.++.||.|+.+++
T Consensus 374 ~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 374 VA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--CCEEEEEeCCceEEEEeC
Confidence 32 347888899999998875
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.09 E-value=2.8e-06 Score=68.72 Aligned_cols=218 Identities=18% Similarity=0.143 Sum_probs=133.7
Q ss_pred eeeEecC-CccEEEeecC-ceEEEEEEecCceeeecccCceeEEEEc-CCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 5 REVNYSG-RGRFSAADSC-HVLSRYLPVNGPWKVDGMNSRVYTSQFS-NDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 5 ~~~~~s~-dg~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s-~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
..+.|.+ +|.+..++-. ..+.++.+............ ...+++. +++.+ +.+... .+.++|..+++.. .....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~-~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVT-VLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEE-EEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEE-EEeec
Confidence 4577887 7777776643 33445444444333323333 7777887 66554 445444 4666698887332 22222
Q ss_pred --cc-ceeeEEEEEeCCCCceEEEeecC--------cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc
Q 015371 82 --KA-LRWTITDTSLSPDQRFLVYASIC--------AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS 150 (408)
Q Consensus 82 --~~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (408)
.. .....+.+++.|+|++.++.... |.+..++.. ++...... ... ....++|+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~-------------~pNGi~~s 142 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG-------------FPNGIAFS 142 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES-------------SEEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc-------------cccceEEC
Confidence 11 34478999999999977765533 556667766 33322211 111 37789999
Q ss_pred CCCCEEEE-EecCCeEEEEECCCCcc-e---e---eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcc
Q 015371 151 TDGQELVA-AGSDNFIYVYDLQANKC-S---L---RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 222 (408)
Q Consensus 151 ~~~~~l~~-~~~dg~i~i~d~~~~~~-~---~---~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (408)
|+++.|++ -+..+.|..+++..... + . .+....+....+++. .++++.++....+.|.++|. .++.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p-----~G~~ 216 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDP-----DGKL 216 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEET-----TSCE
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECC-----CccE
Confidence 99997765 45678899999853322 1 1 122222347789998 88998888888999999994 4677
Q ss_pred ceeeecccCCeEEEEec-CCCCeEEEe
Q 015371 223 NGVLMGHLEGITFIDSR-RDGRYFISN 248 (408)
Q Consensus 223 ~~~~~~~~~~i~~~~~~-~~~~~l~~~ 248 (408)
+..+.-....+++++|. ++.+.|...
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 77666665689999994 565555443
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.09 E-value=4.1e-10 Score=61.46 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=36.9
Q ss_pred CceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 344 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
++++.++++|.++|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.07 E-value=7.7e-09 Score=91.83 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=132.6
Q ss_pred CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC
Q 015371 152 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 231 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 231 (408)
++..++.|+....+..+|+.+.+..+...-..+.|+-|.. +++++.+|...|+|.+-|.+ ..+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 4456777877788889999988776666544555777764 48899999999999999975 8889999999999
Q ss_pred CeEEEEecCCCCeEEEeec---------CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee
Q 015371 232 GITFIDSRRDGRYFISNGK---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 302 (408)
Q Consensus 232 ~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
.|..+... |+.|+++|. |..|++||+|+......... .
T Consensus 219 siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-------------------------------~ 265 (1118)
T KOG1275|consen 219 SISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-------------------------------P 265 (1118)
T ss_pred ceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCccc-------------------------------c
Confidence 99888775 889999876 56689999998554322211 0
Q ss_pred ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC---CC-ceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcE
Q 015371 303 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV---SG-AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 378 (408)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 378 (408)
.+. .. ..+.|.+ ...+++++..|...+-|.. +. .-+..+..-...+..++++++++.|+.+..+|.|
T Consensus 266 ~~P----~f--lrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 266 YGP----QF--LRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCc----hh--hhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 000 00 1112221 3568888889999999943 22 1233333334559999999999999999999999
Q ss_pred EEEe
Q 015371 379 VRWE 382 (408)
Q Consensus 379 ~iw~ 382 (408)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=3.9e-07 Score=73.45 Aligned_cols=224 Identities=15% Similarity=0.103 Sum_probs=131.7
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCC
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 185 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (408)
+|.|..||..+++......+..... ...+. ..+++..+++++.++.|+.||..+|+.+..+.. ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~------------~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG------------GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS------------SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC------------Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc
Confidence 6788999998887654443311000 12211 223566788888999999999999998887764 333
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-eccc---CCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHL---EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+..... ..+..+++++.++.++.+|.. .++..... .... ...........+..++.+..++.|..+|+++
T Consensus 68 ~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 68 ISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp GGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred ccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC
Confidence 222222 235566777788899999954 66666553 2221 1112222223377888888899999999988
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeeeccccee-----eEEEEEeeccccCCCcEEEEeeCCCeE
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR-----TLIRCYFSPEYSTAQKYIYTGSSDNSV 336 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~dg~i 336 (408)
+.. +.......... ........+.+. ++ .++.++.++.+
T Consensus 142 G~~----------------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 142 GKL----------------------------------LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRV 185 (238)
T ss_dssp TEE----------------------------------EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSE
T ss_pred CcE----------------------------------EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeE
Confidence 432 22222211000 000001111222 34 67777777754
Q ss_pred EEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 337 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
..+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+.+++.
T Consensus 186 ~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 186 VAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 444999998664333 2223332 456677788777999999999998765
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=6.1e-07 Score=72.32 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=132.5
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED 140 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (408)
+|+|..||..+++.+.......... ...+. ..+++..+++++.++.+..||..+++............
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~---------- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS---------- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----------
Confidence 6889999998988777664322121 12211 22356677777899999999999987654444322111
Q ss_pred ccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCC---CceEEEEecCCCCEEEEecCCCeEEEEecccc
Q 015371 141 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKS---DVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 216 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~ 216 (408)
.. . ..++..+++++.++.++.+|..+|+.+... ..... ....+... ..++.++++..++.|..+|++
T Consensus 70 --~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~-- 140 (238)
T PF13360_consen 70 --GA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPK-- 140 (238)
T ss_dssp --SG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETT--
T ss_pred --ce---e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecC--
Confidence 01 1 124456777778889999999999988874 32211 11222222 237788888889999999965
Q ss_pred ccCCccceeeecccCC----------eEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccc
Q 015371 217 ISKGRANGVLMGHLEG----------ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 286 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (408)
.++.+......... +..-....++ .+..++.++.+..+|+.++.
T Consensus 141 --tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----------------------- 194 (238)
T PF13360_consen 141 --TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----------------------- 194 (238)
T ss_dssp --TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE-----------------------
T ss_pred --CCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC-----------------------
Confidence 66666555443322 1122222244 66666667754334888732
Q ss_pred cceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 287 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
.+.... ... ... ....++..|++++.++.|..||+++++.+-
T Consensus 195 -----------~~w~~~-~~~-------~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 195 -----------KLWSKP-ISG-------IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -----------EEEEEC-SS--------ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -----------EEEEec-CCC-------ccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 111111 010 000 122357788888899999999999998764
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=85.84 Aligned_cols=146 Identities=16% Similarity=0.305 Sum_probs=108.3
Q ss_pred EEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-----cc
Q 015371 101 VYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-----KC 175 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~ 175 (408)
++.+.+-.+-+-+++++...... . ...|.++.|...+++++.|+.+|.|..+|++.+ .+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~----s------------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ----S------------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred ecccccceeEEEEeecccccccc----c------------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 34445666777788776543222 1 115889999988999999999999999999865 33
Q ss_pred eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEE--EecCCCCeEEEeecCCe
Q 015371 176 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI--DSRRDGRYFISNGKDQT 253 (408)
Q Consensus 176 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~d~~ 253 (408)
...+ -|...|+++....-++.+|++.+.+|+|++||+|.. ..++-+..+.+|...-.-+ .+.+....+++++.|-.
T Consensus 292 a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 292 AQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred eEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeE
Confidence 3334 389999999887447889999999999999999831 2233478888886654433 34566778999999999
Q ss_pred EEEEeCCCCcC
Q 015371 254 TKLWDIRKMSS 264 (408)
Q Consensus 254 i~iwd~~~~~~ 264 (408)
.+||.++.+..
T Consensus 370 tRiWsl~~ghL 380 (425)
T KOG2695|consen 370 TRIWSLDSGHL 380 (425)
T ss_pred EEEEecccCce
Confidence 99999997543
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.02 E-value=1.4e-06 Score=69.71 Aligned_cols=234 Identities=16% Similarity=0.115 Sum_probs=143.6
Q ss_pred EEEEEeCC-CCceEEEeecCc-EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec----
Q 015371 88 ITDTSLSP-DQRFLVYASICA-IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---- 161 (408)
Q Consensus 88 v~~~~~~~-~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 161 (408)
...++.+| ....++.+-.-| ...+||..+++........ .+..| --.-.|++||++|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHF----------yGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHF----------YGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEE----------ecCEEEcCCCCEEEEeccccCC
Confidence 45678889 566677777666 4678999888764433221 11111 224679999999998743
Q ss_pred -CCeEEEEECC-CCcceeeecCcCCCceEEEEecCCCCEEEEecC------------------CCeEEEEeccccccCCc
Q 015371 162 -DNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD------------------DSLCKVWDRRCFISKGR 221 (408)
Q Consensus 162 -dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~ 221 (408)
.|.|-|||.. +.+.+..+..|.-....+.+. +++..|+++.. +..+.+.|. .+++
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~----~sG~ 149 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA----RSGA 149 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec----CCCc
Confidence 5899999998 667777888888788889999 78866666531 223444443 2455
Q ss_pred ccee--e--ecccCCeEEEEecCCCCeEEEeecCCe-------EEEEeCCCCcCccccccccccccccceeeccccccee
Q 015371 222 ANGV--L--MGHLEGITFIDSRRDGRYFISNGKDQT-------TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 290 (408)
Q Consensus 222 ~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (408)
.+.. + ..|...|..+++.++|..++..-..|. +.+++-.
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g------------------------------ 199 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG------------------------------ 199 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC------------------------------
Confidence 4444 3 336778888999888875554433321 2222211
Q ss_pred eccCCCcceeeeecccc-eeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCe
Q 015371 291 LKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (408)
..+..+..... .......+-++++++++.++++.+- .|.+.+||..+++.+...... .+..++-.+++ +
T Consensus 200 ------~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f 270 (305)
T PF07433_consen 200 ------GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-F 270 (305)
T ss_pred ------CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-e
Confidence 11122211110 1111223345577888888866654 678999999999988776533 35667766666 6
Q ss_pred EEeecCCCcE
Q 015371 369 LISSSWDCNI 378 (408)
Q Consensus 369 l~s~~~dg~v 378 (408)
++|.+ .|.+
T Consensus 271 ~~ssG-~G~~ 279 (305)
T PF07433_consen 271 LVSSG-QGQL 279 (305)
T ss_pred EEeCC-CccE
Confidence 66654 4443
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=4.3e-10 Score=99.36 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=138.9
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc--EEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~ 111 (408)
..+..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.... ....|..+|+-+.=+.||..+++.+.-. -..+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHH
Confidence 3577889999999999999999999999999999999984433 4567778999999999999888765443 4678
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec----CcCCCce
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP----AHKSDVN 187 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~ 187 (408)
|++..- ......+. .-.++.|+.....-+.|+......+||++++.++.++- +....-+
T Consensus 1172 W~~~s~-~~~~Hsf~----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1172 WDASST-GGPRHSFD----------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred hccccc-cCcccccc----------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 988642 11122221 36678888776666667666788999999998877642 1222336
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCc
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 263 (408)
+..|+ |...+++ .|| .+||+| ..+.++.+...+..+ .=.|+|+|..++..+ .|||+++..
T Consensus 1235 ~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1235 LAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHH
Confidence 77888 6666665 355 479987 345555555443222 234899999888765 489999843
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.02 E-value=1.3e-06 Score=75.92 Aligned_cols=266 Identities=11% Similarity=-0.049 Sum_probs=153.8
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEE-----EEEeCC--CCceEEEeecCcEEEEEECCCCceeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTIT-----DTSLSP--DQRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
+..+++++.+|.+.-+|..+++.+.+....... .... .+.-.| ++..++.++.+|.+..+|.++++......
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-GWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-cccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 556777788889999999888777654332210 0000 011111 35567778889999999999887654333
Q ss_pred eeeeeeeeeecCCCCCccceEE-EEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc-----eEEEEecCCCCE
Q 015371 125 VTIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGHL 198 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~ 198 (408)
.... +.+ ... .+..+++++.++.++.+|.++|+.+.......... .+.... +..
T Consensus 148 ~~~~---------------~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~ 207 (394)
T PRK11138 148 VAGE---------------ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGG 207 (394)
T ss_pred CCCc---------------eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCE
Confidence 2211 111 111 23457778889999999999999887775321111 111111 235
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeeccc----C---CeEEEEecC--CCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHL----E---GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~---~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
++.++.+|.+..+|.. .++......... . ....+..+| .+..++.++.+|.+..+|..+++....
T Consensus 208 v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~-- 281 (394)
T PRK11138 208 AIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK-- 281 (394)
T ss_pred EEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe--
Confidence 6777788988888864 343332221100 0 011111122 245677777889999999887432111
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (408)
...... . .+ ..++..++.++.+|.+..+|..+++.+-.
T Consensus 282 --------------------------------~~~~~~-~-------~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 282 --------------------------------REYGSV-N-------DF--AVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred --------------------------------ecCCCc-c-------Cc--EEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 000000 0 00 11356788888999999999999987654
Q ss_pred EccCC-CCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 350 LDFHN-APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 350 ~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
...-. ....+.... +..|+.++.||.|+..|..+++.
T Consensus 320 ~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 320 QSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred ccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCCCCE
Confidence 33211 122223332 45677888999999999887754
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.1e-09 Score=59.66 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=34.2
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 68 (408)
...+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999997
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.95 E-value=2.6e-06 Score=78.78 Aligned_cols=238 Identities=12% Similarity=0.130 Sum_probs=143.4
Q ss_pred eeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeE
Q 015371 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 165 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 165 (408)
..|.++.|..+...++.+...|.|.+-|.++........... .|.+++|+||++.++..+..+++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---------------GI~aaswS~Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---------------GISAASWSPDEELLALITGRQTL 133 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---------------ceEEEeecCCCcEEEEEeCCcEE
Confidence 479999999999999999999999999887766544333221 59999999999999999888888
Q ss_pred EEEECC----CCcce-------------------eeecCc---------------------CCCceEEEEecCCCCEEEE
Q 015371 166 YVYDLQ----ANKCS-------------------LRIPAH---------------------KSDVNTVCFADETGHLIFS 201 (408)
Q Consensus 166 ~i~d~~----~~~~~-------------------~~~~~~---------------------~~~v~~l~~~~~~~~~l~~ 201 (408)
.+.+-. ..+++ ..+.+. ...=++++|- .+|.++++
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAV 212 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAV 212 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEE
Confidence 775431 11111 111110 1122458888 88999988
Q ss_pred e-----cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeec---CCeEEEEeCCCCcCccccccccc
Q 015371 202 G-----SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 202 ~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
. ...+.|++||.. +..-..-....+.-.+++|-|.|..+++... |+.|.++.-+......
T Consensus 213 s~~~~~~~~RkirV~drE-----g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~------- 280 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-----GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE------- 280 (1265)
T ss_pred EEEeccCCceeEEEeccc-----chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc-------
Confidence 3 333789999942 3333333333444568999999998887543 5568888765522110
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE---eeCCCeEEEEECCCCc--eeE
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT---GSSDNSVYIYDLVSGA--QVA 348 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~---~~~dg~i~vwd~~~~~--~~~ 348 (408)
-...+.... .. +-.++|..++..||+ ......|++|-+.+.. ..+
T Consensus 281 ------------------------f~l~~p~de--~~----ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 281 ------------------------FVLPFPLDE--KE----VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred ------------------------cccCCcccc--cc----hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 000011111 00 233456677888887 4445559999887653 223
Q ss_pred EEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEee
Q 015371 349 KLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEI 383 (408)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~ 383 (408)
.+....... +.|+|... .|..-..+|...++++
T Consensus 331 ~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 331 ELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 333222222 66776433 2333335555554443
No 313
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=5.4e-07 Score=78.31 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=101.6
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
|...|.--+++..+++++.|+.-|.+++|+-..++... . ...+..+.+..+..+++..++|.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~-~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-L-KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-c-cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 44556666777789999999999999999976653322 2 122233457778889999999999999999999887643
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC----cceeeecCcCCCceEEEEe
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN----KCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~ 192 (408)
......+. +....|...|++++|++++..+++|...|.|..-.+.+. ...+.+-...+.|-.+.+.
T Consensus 110 p~~~~~~t--------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVT--------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceeec--------cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 32222211 111235668999999999999999999999999888762 1122233346777777775
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.94 E-value=2.9e-06 Score=78.55 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=137.0
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC----
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG---- 115 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~---- 115 (408)
.+.|.++.|..+..-++.+...|.|.+-|.++..... .......|.+++|+||++.++..+..+++.+-.-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 4689999999999999999999999999877652221 12233479999999999999999888887664321
Q ss_pred CCceee------e--eeee-eeeeeeeecCC-----------------CCCccceEEEEEcCCCCEEEEEec----C-Ce
Q 015371 116 SSARES------L--ANVT-IHKGLDFSADG-----------------DEDEFGIFSVKFSTDGQELVAAGS----D-NF 164 (408)
Q Consensus 116 ~~~~~~------~--~~~~-~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~l~~~~~----d-g~ 164 (408)
..+... . .... +.+...|.... ......=+++.|--||+++++... + ..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 111000 0 0000 00000111000 001112345899999999988432 3 78
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec---CCCeEEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
|++||-+ |..-..-....+.-.+++|- |.|.++++-. .|+.|.+|..+ +...+.....+......+..++|+.+
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCC
Confidence 9999987 54433333344555789998 6888888753 45678888843 12233333334444455899999999
Q ss_pred CCeEEE---eecCCeEEEEeCCC
Q 015371 242 GRYFIS---NGKDQTTKLWDIRK 261 (408)
Q Consensus 242 ~~~l~~---~~~d~~i~iwd~~~ 261 (408)
+..|++ ......|++|-+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCceeeeecccccceEEEEEecC
Confidence 998887 45555699998876
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.94 E-value=5.5e-06 Score=66.39 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=129.6
Q ss_pred ceeEEEEcC-CCCeEEEEeCCCc-EEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-----cCcEEEEEEC
Q 015371 42 RVYTSQFSN-DGSFFVAASQESN-IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDV 114 (408)
Q Consensus 42 ~v~~~~~s~-~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~~w~~ 114 (408)
....++.+| ++..+|.+-.-|+ ..+||..++..........+. .---.-.|++||++|++.- ..|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-EEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 5566667766554 778999988766554432221 1122357999999999864 3578999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec------------------CCeEEEEECCCCcce
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------------DNFIYVYDLQANKCS 176 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~ 176 (408)
.. ....+..+..+-- ....+.+.|||+.|+++.. +..+...|..+|+.+
T Consensus 85 ~~-~~~ri~E~~s~GI------------GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 85 AR-GYRRIGEFPSHGI------------GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred cC-CcEEEeEecCCCc------------ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 83 3333444433322 4677889999988887732 345667778888877
Q ss_pred ee--e--cCcCCCceEEEEecCCCCEEEEecCCC-------eEEEEeccccccCCcccee-------eecccCCeEEEEe
Q 015371 177 LR--I--PAHKSDVNTVCFADETGHLIFSGSDDS-------LCKVWDRRCFISKGRANGV-------LMGHLEGITFIDS 238 (408)
Q Consensus 177 ~~--~--~~~~~~v~~l~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~-------~~~~~~~i~~~~~ 238 (408)
.+ + ..|...|..|++. .++..++..-..| .|-+++. +..+.. ...-.+.+-+|++
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~------g~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRR------GGALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred eeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcC------CCcceeccCChHHHHhhCCceEEEEE
Confidence 66 4 3377889999998 7776555443332 2344442 121211 1233577899999
Q ss_pred cCCCCeEE-EeecCCeEEEEeCCC
Q 015371 239 RRDGRYFI-SNGKDQTTKLWDIRK 261 (408)
Q Consensus 239 ~~~~~~l~-~~~~d~~i~iwd~~~ 261 (408)
++++..++ |+-..+.+.+||..+
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCC
Confidence 99998764 555678899999887
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.1e-07 Score=84.31 Aligned_cols=110 Identities=12% Similarity=0.154 Sum_probs=87.7
Q ss_pred EEEEEeCCCCceEEEee----cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC
Q 015371 88 ITDTSLSPDQRFLVYAS----ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 163 (408)
Q Consensus 88 v~~~~~~~~~~~l~~~~----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (408)
-+-..|+|...++++++ ..|.|.||- ++++.......+. .+++++|+|..-.|+.|-.-|
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---------------hatSLCWHpe~~vLa~gwe~g 81 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---------------HATSLCWHPEEFVLAQGWEMG 81 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---------------ehhhhccChHHHHHhhccccc
Confidence 34467999999999886 357888874 3444332222222 377899999988889998899
Q ss_pred eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 164 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
.+.+|...+.+.......|..+|..+.|+ ++|..++++..-|.+.+|...
T Consensus 82 ~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 82 VSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 99999988887766677899999999999 999999999999999999864
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.90 E-value=3.3e-06 Score=68.50 Aligned_cols=278 Identities=16% Similarity=0.103 Sum_probs=156.4
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee----------cCcEEEEEECCCCceeeeeeeeee-ee
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDVGSSARESLANVTIH-KG 130 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~w~~~~~~~~~~~~~~~~-~~ 130 (408)
+.++++|.++++.+-...... .-.+..+|+++.++++. ....|.+||..+-.......++.. +.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999988875444332222 23366899999998754 234699999998876555444432 11
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeE
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 208 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 208 (408)
... .....++++.|++++++... ...|.|.|+..++.+..+... . |.-..|..+.-|.+-+.||.+
T Consensus 92 ~~~--------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 92 QVV--------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp -BS----------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCE
T ss_pred eec--------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C--EEEEEecCCCceEEEecCCce
Confidence 100 02344688899998888754 568999999999988777531 2 222223344567888889999
Q ss_pred EEEeccccccCCcccee----eecccCCe-EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 209 KVWDRRCFISKGRANGV----LMGHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
.-..+. ..++.... +.....++ ..-.+...+..++-.+.+|.|+--|+......... .|....
T Consensus 160 ~~v~Ld---~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-------~~~~~t-- 227 (342)
T PF06433_consen 160 LTVTLD---ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-------PWSLLT-- 227 (342)
T ss_dssp EEEEET---STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-------EEESS---
T ss_pred EEEEEC---CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-------cccccC--
Confidence 888875 23333222 11112222 23334445555666778899998888763311100 000000
Q ss_pred ccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC--------CC--eEEEEECCCCceeEEEccC
Q 015371 284 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--------DN--SVYIYDLVSGAQVAKLDFH 353 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--------dg--~i~vwd~~~~~~~~~~~~~ 353 (408)
......-+.|.+-.+ .++++..+.|++--. |+ .|.++|+.+++.+.++..
T Consensus 228 -~~e~~~~WrPGG~Q~------------------~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l- 287 (342)
T PF06433_consen 228 -DAEKADGWRPGGWQL------------------IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL- 287 (342)
T ss_dssp -HHHHHTTEEE-SSS-------------------EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-
T ss_pred -ccccccCcCCcceee------------------eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-
Confidence 000000000001111 122222222222111 21 488899999999999874
Q ss_pred CCCeeeeeEeCCCC-eEEee-cCCCcEEEEeeCCCCC
Q 015371 354 NAPVRDCCWHPIYP-MLISS-SWDCNIVRWEIPGIGE 388 (408)
Q Consensus 354 ~~~v~~~~~~~~~~-~l~s~-~~dg~v~iw~~~~~~~ 388 (408)
..++.+++.+.+.+ +|++. ..++.+.+||..+++.
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 34688999998877 66554 5689999999998755
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.3e-07 Score=81.64 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=97.6
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC-----CceEEEeecCcEEEEEECCCCceeeeee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-----QRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
.+|.++++|+.||+|.|-.+.+.....+. .. ..++.+++++|+ .+.+++|+..| +.++.-.=........
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQY-DF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeE-ec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 35999999999999999998887555432 22 237999999997 57899999888 6666432111110111
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCC------ceEEEEecCCCCE
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD------VNTVCFADETGHL 198 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------v~~l~~~~~~~~~ 198 (408)
... ..++|.++.|. |+++|-++.+| |++||..+++.+..++..... ...+.|. +...
T Consensus 156 l~~------------~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~~~ 218 (846)
T KOG2066|consen 156 LSE------------GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DEDR 218 (846)
T ss_pred eec------------CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CCCe
Confidence 111 23379999995 77899888777 999999998877766533232 3456775 4556
Q ss_pred EEEecCCCeEEEEecc
Q 015371 199 IFSGSDDSLCKVWDRR 214 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~ 214 (408)
|+.|-.| +|++..++
T Consensus 219 LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 219 LVIGWGD-SVKICSIK 233 (846)
T ss_pred EEEecCC-eEEEEEEe
Confidence 6666554 78888876
No 319
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.88 E-value=1.2e-05 Score=66.58 Aligned_cols=200 Identities=18% Similarity=0.171 Sum_probs=96.8
Q ss_pred CceeEEEEcCCCCeEEEEeC-C--CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 41 SRVYTSQFSNDGSFFVAASQ-E--SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
..-+.=+|.+||+.|+.++. | ..+.+-|+.+++..+ +....+. ......++|+++.++....+..++-.|+.+.
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~--~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGD--NTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B---TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCC--CccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 33444578889977666554 4 456677777774433 3222211 1223567788888877666678999999998
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEE--cCCCCEEEEEe----------------------cCCeEEEEECCCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKF--STDGQELVAAG----------------------SDNFIYVYDLQAN 173 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~----------------------~dg~i~i~d~~~~ 173 (408)
+...+..++.. .+-...| +.|+..++-.- ....|...|+.+|
T Consensus 113 e~~~vy~~p~~--------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 113 EERVVYEVPDD--------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp -EEEEEE--TT--------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred cEEEEEECCcc--------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 76655554422 1222333 23454443221 1234667788888
Q ss_pred cceeeecCcCCCceEEEEecCCCCEEEEecC---CC-eEEEEeccccccCCccceeeeccc--CCeEEEEecCCCCeEEE
Q 015371 174 KCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DS-LCKVWDRRCFISKGRANGVLMGHL--EGITFIDSRRDGRYFIS 247 (408)
Q Consensus 174 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~ 247 (408)
+....+. ....+..+.|+|.++.+|+-|-+ +. .-|||-++. .+.....+..+. ..+..=-|.|||..|.-
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 7555444 46678899999888888877654 22 247787753 333333333332 22333348899987654
Q ss_pred eec-----CCeEEEEeCCC
Q 015371 248 NGK-----DQTTKLWDIRK 261 (408)
Q Consensus 248 ~~~-----d~~i~iwd~~~ 261 (408)
-+. +..|.-+|+.+
T Consensus 255 ~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEETTT--EEEEEE-TTT
T ss_pred EeecCCCCceEEEeeCCCC
Confidence 322 33455566655
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.7e-07 Score=75.65 Aligned_cols=236 Identities=17% Similarity=0.151 Sum_probs=134.4
Q ss_pred CCccceEEEEEcCCCC-EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccc
Q 015371 139 EDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 217 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (408)
.+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|++|..+|.|.+||+|..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~- 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP- 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC-
Confidence 3444799999999766 7888899999999999999988888877 889999999777889999999999999999842
Q ss_pred cCCccceeeec--ccCCeEEEEe------cCCCCeEEEeecCCeEEEEeCCCCcCcccccccc------ccccccc----
Q 015371 218 SKGRANGVLMG--HLEGITFIDS------RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL------RDYDWDY---- 279 (408)
Q Consensus 218 ~~~~~~~~~~~--~~~~i~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~---- 279 (408)
......+.+ ...+|..++. .+.+.+++....+ +..|++............. ..+.++.
T Consensus 269 --~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 269 --EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred --CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 222222222 2334444442 2234445444433 5666655422221111111 1111110
Q ss_pred eeecccc---------cceeeccCCCcceeeee-cc---cc-eeeEEEEEeeccccCCCcEEE-EeeCCCeEEEEECCCC
Q 015371 280 RWMEYPS---------YARRLKHPHDQSLATYK-GH---SV-LRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVSG 344 (408)
Q Consensus 280 ~~~~~~~---------~~~~~~~~~~~~~~~~~-~~---~~-~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~ 344 (408)
....+.+ .........+.++..-+ ++ .. .......++. .++.++|+ +|...+.+.+||..++
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~---~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA---VEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec---cccccEEEEecCCcceeEEeccchh
Confidence 0000000 00011111111111111 00 00 0000011111 23445554 4455678999999999
Q ss_pred ceeEEEccCCCCeeeeeEeC-CCC-eEEeecCCCcEEEEeeCC
Q 015371 345 AQVAKLDFHNAPVRDCCWHP-IYP-MLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~dg~v~iw~~~~ 385 (408)
+.++++.. +.+|.+++... ++. +|++- .|..++|+..+.
T Consensus 422 evvQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred heeeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 99999974 47888887654 333 66555 466888887653
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.1e-09 Score=92.34 Aligned_cols=192 Identities=16% Similarity=0.200 Sum_probs=126.5
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCC--eEEEEecccc
Q 015371 139 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCF 216 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 216 (408)
.+....+|++|+-+.++|++|+..|.|+++++.+|.......+|..+|+-+.-+ .++..+++.+.-. -..+|++.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~-- 1175 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDAS-- 1175 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhccc--
Confidence 345579999999999999999999999999999999999999999999999988 7777766655433 47789974
Q ss_pred ccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCC
Q 015371 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (408)
..+...+.+.+ -.++.|+.....-+.|.......+||+.+.........
T Consensus 1176 -s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt-------------------------- 1224 (1516)
T KOG1832|consen 1176 -STGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT-------------------------- 1224 (1516)
T ss_pred -cccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC--------------------------
Confidence 35555555543 35677877655555565556799999998543322111
Q ss_pred cceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCC
Q 015371 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 376 (408)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 376 (408)
+........ ....|+|+..+++ .|| .+||++..+.++.|...+..+ .=.|+|.|..++.-++
T Consensus 1225 -------~~~~~~y~~---n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-- 1286 (1516)
T KOG1832|consen 1225 -------DTVTSSYSN---NLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-- 1286 (1516)
T ss_pred -------cchhhhhhc---cccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech--
Confidence 100000000 1124666666665 344 467777776666665433222 2257777776665543
Q ss_pred cEEEEeeCC
Q 015371 377 NIVRWEIPG 385 (408)
Q Consensus 377 ~v~iw~~~~ 385 (408)
|||+++
T Consensus 1287 ---IwD~RT 1292 (1516)
T KOG1832|consen 1287 ---IWDMRT 1292 (1516)
T ss_pred ---hhhhHH
Confidence 566554
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.82 E-value=1.8e-05 Score=62.51 Aligned_cols=211 Identities=14% Similarity=0.186 Sum_probs=116.0
Q ss_pred eeeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
+.+.+-...+..++|.|+.+ ++++....+.|...+.+ ++.+.. ....+ .+..-.+++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-IPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-EE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-EeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 45667677799999999855 55566677778777764 444443 33333 2257788898888777766568899999
Q ss_pred ECCCCcee-eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC---Ccceee--------ec
Q 015371 113 DVGSSARE-SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---NKCSLR--------IP 180 (408)
Q Consensus 113 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~ 180 (408)
++...... ..... ....+... ..+...+..++|.+.++.|+++-......+|.+.. ...... ..
T Consensus 92 ~~~~~~~~~~~~~~---~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 92 TIDDDTTSLDRADV---QKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EE----TT--EEEE---EEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEeccccccchhhc---eEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 88443211 11110 01111111 12334689999999888888887776666666643 111111 12
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc---------CCeEEEEecCCCCeEEEeecC
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL---------EGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~d 251 (408)
.....+.+++++|..+++++....+..|..+|. .++.+..+.-.. ...-.|++.++|++.++ ++-
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEp 241 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEP 241 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETT
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCC
Confidence 234568899999888999999999999999994 444444332211 35678999999975554 455
Q ss_pred CeEEEE
Q 015371 252 QTTKLW 257 (408)
Q Consensus 252 ~~i~iw 257 (408)
+..+++
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555443
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.4e-06 Score=75.20 Aligned_cols=207 Identities=12% Similarity=0.118 Sum_probs=127.4
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceee-EEEEEeCCCCceEEEeecCc-----EEEEEECC
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT-ITDTSLSPDQRFLVYASICA-----IVNIVDVG 115 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~~w~~~ 115 (408)
.|+ +|++.+..+|.|+.+|.|.+.+- ..... .....+... |..+....+..+|++.+.|+ .+++|+++
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~--s~~~~--~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNS--SFQLI--RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEecc--cceee--ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 555 46788899999999998877763 22221 122222223 44343333446777776654 58999997
Q ss_pred CCceee-eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC----CCcceeeecCcCCCceEEE
Q 015371 116 SSARES-LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ----ANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~l~ 190 (408)
.-+... ..-...+.- +.........++.+++.+.+-+.+++|-.+|.|..+.=. .+....-......+|+.++
T Consensus 101 k~~~n~sP~c~~~~ri--~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRI--FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccCCCCCcceeeeeee--eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 543211 000101111 111112345589999999999999999999999888421 1111111223467999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+. .++..++.......|.+|.+. ........+..|.....|..+++....+++++. ..+.+||...
T Consensus 179 ~~-~d~~s~lFv~Tt~~V~~y~l~---gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 179 LR-SDGKSVLFVATTEQVMLYSLS---GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred Ee-cCCceeEEEEecceeEEEEec---CCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 98 666552333334578999974 122334557778889999999987665776664 4699999875
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.79 E-value=3.6e-07 Score=81.63 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=133.1
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
+..++.|+--..+..+|+.+............ .|.-|+. +++++.+|...|+|.+-|..+.+. +..+..|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~---~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~--iht~~aHs~- 218 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS---GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET--IHTFDAHSG- 218 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCC---ceEEEEe--cCcEEEeecccceEEeecCCcCce--eeeeecccc-
Confidence 34566666666788888877644433222221 3554544 588999999999999999987765 445555544
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEec---------CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEe
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGS---------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~ 202 (408)
.|.++. -.|+.|++++. |..|+|||++..+.+..+.-+.++ .-+.|.|.-...++++
T Consensus 219 -----------siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~ 284 (1118)
T KOG1275|consen 219 -----------SISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT 284 (1118)
T ss_pred -----------ceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE
Confidence 566554 46888998875 566899999988777766655554 6677887778889999
Q ss_pred cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeC
Q 015371 203 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 259 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 259 (408)
+..|...+-|..........+.........+..++++++++.++.+..+|.|.+|--
T Consensus 285 S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 285 SQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 999999999943222232334444445566999999999999999999999999983
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.77 E-value=1.2e-05 Score=68.70 Aligned_cols=204 Identities=12% Similarity=0.153 Sum_probs=107.1
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc--------------eeeEEEEEeCCCCceEEEee
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL--------------RWTITDTSLSPDQRFLVYAS 104 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~ 104 (408)
....+....|||+|+.+|... ++.|.+++..++...+........ -+.-.++.||||+++||...
T Consensus 41 ~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 41 PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 357799999999999999886 568999998777433322211000 01235688999999999875
Q ss_pred cC-cEEEE---EECCCCce--eeeeeeeeee------ee-------------eeecC--CCCCccceEEEEEcCCCCEEE
Q 015371 105 IC-AIVNI---VDVGSSAR--ESLANVTIHK------GL-------------DFSAD--GDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 105 ~d-g~i~~---w~~~~~~~--~~~~~~~~~~------~~-------------~~~~~--~~~~~~~i~~~~~~~~~~~l~ 157 (408)
.| ..|.. -+...... .....+...+ .. ..... ......-+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 22222 22222211 0111111000 00 00000 012234588899999988454
Q ss_pred EEec-----CCeEEEEECCCCcceeeecC-cCC---CceEEEEe-cCCCCEEEEecCCCeEEEEeccccccCCccceeee
Q 015371 158 AAGS-----DNFIYVYDLQANKCSLRIPA-HKS---DVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227 (408)
Q Consensus 158 ~~~~-----dg~i~i~d~~~~~~~~~~~~-~~~---~v~~l~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (408)
..-. ...+.++|..++.....+.. ... .-....|. +.+..++.....+|.-.|+-++ ..+.....+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~---~~~~~~~~lT 276 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD---LDGGKPRQLT 276 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE---TTSSEEEESS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc---ccccceeccc
Confidence 4432 23577778877765443322 122 22345554 5666677777788876666553 2333344555
Q ss_pred cccCCeEE-EEecCCCCeEE
Q 015371 228 GHLEGITF-IDSRRDGRYFI 246 (408)
Q Consensus 228 ~~~~~i~~-~~~~~~~~~l~ 246 (408)
...-.|.. +.++++++.|.
T Consensus 277 ~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEE
T ss_pred cCceeecccceEcCCCCEEE
Confidence 55556644 56788777554
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.74 E-value=1.5e-05 Score=68.09 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=61.2
Q ss_pred cCCCCeEEEEe---------CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCce
Q 015371 49 SNDGSFFVAAS---------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (408)
Q Consensus 49 s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (408)
|||+++++... ..+.+.|||++++.... +... ...+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 67888777632 24679999999874333 2222 33688899999999999886 67899998877744
Q ss_pred eeeeeeeeeeeeeeecCC-----CCCccceEEEEEcCCCCEEEEEe
Q 015371 120 ESLANVTIHKGLDFSADG-----DEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..+..- . ....+.... ++--..-..+-|+||+++|+...
T Consensus 76 ~~lT~d-g-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 76 TQLTTD-G-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EEeccc-c-ceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 333221 1 110000000 00011235688999999888654
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.73 E-value=6.6e-05 Score=67.05 Aligned_cols=278 Identities=9% Similarity=0.057 Sum_probs=149.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEeccccc---ceeeEE--EEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKA---LRWTIT--DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT 126 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 126 (408)
+..+..++.++.++-.|..+++.+........ ....+. .+... ++..++.++.++.|.-+|.++++........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566777789999999988876655432221 000010 01111 2267778888999999999998875444332
Q ss_pred eeeeeeeecCCCCCccceE-EEEEcCCCCEEEEEe---------cCCeEEEEECCCCcceeeecCcCCC-----------
Q 015371 127 IHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAG---------SDNFIYVYDLQANKCSLRIPAHKSD----------- 185 (408)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~----------- 185 (408)
......+ .+. ...+. + ..++.++ .++.++.+|..+|+.+..+......
T Consensus 140 ~~~~~~~---------~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 140 DQVPPGY---------TMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CCcCcce---------EecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Confidence 2100000 000 11111 2 3455543 3678999999999988776432110
Q ss_pred ---------c-eEEEEecCCCCEEEEecCCC------------------eEEEEeccccccCCccceeeecccCCe----
Q 015371 186 ---------V-NTVCFADETGHLIFSGSDDS------------------LCKVWDRRCFISKGRANGVLMGHLEGI---- 233 (408)
Q Consensus 186 ---------v-~~l~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~i---- 233 (408)
+ ...++. +.+.+++.++.++ .|.-+|.. +++..-....-....
T Consensus 209 ~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 209 QMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred ceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcccc
Confidence 0 123333 3456777777665 57777754 555554432111100
Q ss_pred --EEEEec----CCCC---eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec
Q 015371 234 --TFIDSR----RDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 304 (408)
Q Consensus 234 --~~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
....+. -++. .++.++.+|.+...|.++++........
T Consensus 284 ~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--------------------------------- 330 (488)
T cd00216 284 GPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--------------------------------- 330 (488)
T ss_pred cCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---------------------------------
Confidence 000111 1333 5777888999999999885533221110
Q ss_pred ccceeeEEEEEeeccccCCCcEEE------------------EeeCCCeEEEEECCCCceeEEEccCC--------CCee
Q 015371 305 HSVLRTLIRCYFSPEYSTAQKYIY------------------TGSSDNSVYIYDLVSGAQVAKLDFHN--------APVR 358 (408)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~l~------------------~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~v~ 358 (408)
...+..+| ..++ ....+|.+.-.|+.+|+.+-+..... .+..
T Consensus 331 ----------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 331 ----------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred ----------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 00001111 1111 12346778888888888766654321 1111
Q ss_pred eeeEeCCCCeEEeecCCCcEEEEeeCCCCCCCc
Q 015371 359 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL 391 (408)
Q Consensus 359 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 391 (408)
.-...-.+..|+.++.||.|+.+|..+++....
T Consensus 399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred CcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 111112456788888999999999988876543
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=4.7e-05 Score=58.52 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=87.8
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
..+++.|+..+.+.--|..++....+..... .|.+-+.- -|++++.|+..|.+++.+..++...........-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 3567778888888888888876655443322 22222221 4677999999999999999998653332221110
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 208 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 208 (408)
.+ .....+++..+..|+.|++.+..|.++..++.+.+...+.-.+-+..|.++.+.+ +...|.+
T Consensus 96 -----------k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~-a~t~G~v 159 (354)
T KOG4649|consen 96 -----------KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA-AITAGAV 159 (354)
T ss_pred -----------cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE-EeccceE
Confidence 11 2345678999999999999999999999888877654444444455533444443 3444444
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.5e-06 Score=75.39 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=106.6
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.+.|++++ +++|+.|+.+|.|++.+....- . ....+.. . ..+|.++++|+.||.|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~---~~~~~s~-------------~-----~~~Gey~asCS~DGkv~ 96 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-K---TNFDHSS-------------S-----ILEGEYVASCSDDGKVV 96 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-c---ccccccc-------------c-----ccCCceEEEecCCCcEE
Confidence 46666665 7899999999999999876432 1 1111111 1 55899999999999999
Q ss_pred EEECCCCcceeeecCcCCCceEEEEecC----CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 167 VYDLQANKCSLRIPAHKSDVNTVCFADE----TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
|-.+-+.+...++. ...++.+++++|. ....+++|+.-| +.++.-+-. ..+....+..-.++|.++.|. |
T Consensus 97 I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--gnk~~v~l~~~eG~I~~i~W~--g 170 (846)
T KOG2066|consen 97 IGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--GNKDSVVLSEGEGPIHSIKWR--G 170 (846)
T ss_pred EeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh--cCccceeeecCccceEEEEec--C
Confidence 99998887776665 4678999999942 256899999988 777764311 112222456677899999997 8
Q ss_pred CeEEEeecCCeEEEEeCCCCc
Q 015371 243 RYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~ 263 (408)
++++=++.+| |++||+....
T Consensus 171 ~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred cEEEEecCCC-cEEEeccccc
Confidence 8888887776 9999998744
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.3e-06 Score=77.67 Aligned_cols=330 Identities=10% Similarity=0.031 Sum_probs=169.0
Q ss_pred eEecCCccEEEe-----ecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 7 VNYSGRGRFSAA-----DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 7 ~~~s~dg~~~~~-----~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
.+|.|..-+++. .....+.-+...++|++-..-+-.+++++|+|..-.||.|-.-|.+.+|...+.+... ..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---v~ 97 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---VV 97 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee---ec
Confidence 456666655443 2223334456666666554555567789999999899999999999999987654332 23
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC------E
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ------E 155 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~ 155 (408)
..|..+|..+.||++|..++++..-|.+.+|....-.......+-.|.- .......|...++++. .
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel--------~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHEL--------NDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHh--------hceeeEEEEecCCChHHhhhhhh
Confidence 4456689999999999999999999999999876332211111111110 0011245555666643 2
Q ss_pred EEEEecCCeEE-EEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 156 LVAAGSDNFIY-VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 156 l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
.++++.+..+- .++.+......... |.+ -+++..++.++.+|+|+..|- .+......... +. .
T Consensus 170 aaVtgDe~alD~~fnwk~~~a~rs~~-ksg--------v~~g~~F~~~~~~GtVyyvdq-----~g~~~~V~k~d-S~-v 233 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLAERSDE-KSG--------VPKGTEFLFAGKSGTVYYVDQ-----NGRQRTVHKLD-SE-V 233 (1416)
T ss_pred hhccCchhhhcccccCccchhhcccc-ccC--------CCCCcEEEEEcCCceEEEEcC-----CCcEEEEEEcc-ch-H
Confidence 33333333322 33222111111111 111 167888899999999998882 33333333221 11 2
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccc--ccceeecccccceeeccCCCcceeeee--cccceee
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD--WDYRWMEYPSYARRLKHPHDQSLATYK--GHSVLRT 310 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 310 (408)
.+-|.+-...+++.-.+-++.++-.................. ..-..++.+... + .+..-+ +....
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-------G-vLr~~eKyg~e~g-- 303 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-------G-VLRKSEKYGLELG-- 303 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-------c-cccCCcchhhhcC--
Confidence 233444333344444443444433222110000000000000 000000000000 0 000000 00000
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC-------ceeEEEcc---CCCCeeeeeEeCCCCeEEeecCC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------AQVAKLDF---HNAPVRDCCWHPIYPMLISSSWD 375 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d 375 (408)
..+.+++++..+..++.|...|.+.+|--... +....+.+ ..+.|+.+.|.|-.+.++.-+..
T Consensus 304 --e~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 304 --EGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred --CceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 12234456667889999999999999953221 22333332 34679999999976665554443
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5.2e-06 Score=74.10 Aligned_cols=195 Identities=13% Similarity=0.129 Sum_probs=119.5
Q ss_pred EecCCccEEEeecCceEEEEEEecCc--eeeecccCc-eeEEEEcCCCCeEEEEeCCC-----cEEEEEcCCCe------
Q 015371 8 NYSGRGRFSAADSCHVLSRYLPVNGP--WKVDGMNSR-VYTSQFSNDGSFFVAASQES-----NIKVYNVDKNW------ 73 (408)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~~~--~~l~~h~~~-v~~~~~s~~~~~l~t~~~dg-----~i~iw~~~~~~------ 73 (408)
.+++.+..++-+....-...++.... +-++.+... |..+....+..+|++-+.|+ .++||+++.-.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 34566666665555554444443322 345566666 55444444557888877664 49999987531
Q ss_pred eE--EEecc--cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE
Q 015371 74 KI--QKDIE--TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 74 ~~--~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (408)
.+ ..... ......++.+++.+.+-+.+|+|-.+|.|..+.-+-.+....+....+. ...+|+.+.+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~----------~~~pITgL~~ 179 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR----------GKEPITGLAL 179 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc----------CCCCceeeEE
Confidence 11 11111 1123457889999999999999999999988853221111111111111 1337999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCcc-eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 150 STDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
..+++.++.+..-..|.+|.+....+ ...+..|...+.|-.++++.+.++++++ ..+.+||..
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd 243 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSD 243 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCC
Confidence 99888733333456799999985443 3346778889999999955554554443 469999953
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.70 E-value=9.8e-06 Score=71.37 Aligned_cols=256 Identities=16% Similarity=0.197 Sum_probs=132.3
Q ss_pred EEEEeCCCcEEEEEcCCCeeEEEecccccc----------eeeEE-----------------EEEeC---CCCceEEEee
Q 015371 55 FVAASQESNIKVYNVDKNWKIQKDIETKAL----------RWTIT-----------------DTSLS---PDQRFLVYAS 104 (408)
Q Consensus 55 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------~~~v~-----------------~~~~~---~~~~~l~~~~ 104 (408)
+.+|+..|.++|+-+.+.+.+..+...... ...|. .+++. .||++|..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 668888999999998887665543221110 00010 11221 2577777665
Q ss_pred c-CcEEEEEECCCCceeeeeeeeeeee---eeeecCCCCCccceE-----EEEEcCCCCEEEEEec-CCeEEEEECCCCc
Q 015371 105 I-CAIVNIVDVGSSARESLANVTIHKG---LDFSADGDEDEFGIF-----SVKFSTDGQELVAAGS-DNFIYVYDLQANK 174 (408)
Q Consensus 105 ~-dg~i~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 174 (408)
. +..|-..++...+...+..++...+ ..+... .+...|. .+=+.|||+.+...+. .+.+.+.|.++.+
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~--p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKI--PRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCcccc--CCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 3 4556666666555544444332222 111100 0111111 1223456665533322 4667778888776
Q ss_pred ceeeecCcCCCceEEEEecCCCCEEEEecC----------------------------------------CCeEEEEecc
Q 015371 175 CSLRIPAHKSDVNTVCFADETGHLIFSGSD----------------------------------------DSLCKVWDRR 214 (408)
Q Consensus 175 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~----------------------------------------dg~i~iwd~~ 214 (408)
...++.. .+....++++ +++.++++.+. ++.|.+.|.+
T Consensus 227 V~~qV~V-dgnpd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~ 304 (635)
T PRK02888 227 VAWQVMV-DGNLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGR 304 (635)
T ss_pred EEEEEEe-CCCcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECC
Confidence 6655543 2233555666 56666655541 2345556643
Q ss_pred ccccCCccceeeecccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
........+.....-......+.++|||+++++++. +.++.+.|+.+........ + .
T Consensus 305 t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~---------------------~-~ 362 (635)
T PRK02888 305 KAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK---------------------I-K 362 (635)
T ss_pred ccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc---------------------C-C
Confidence 100001122222233455678999999998877665 8899999998743211000 0 0
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
+....+...+-- ......+|+++|+...+-..|..|..||+.+
T Consensus 363 ~~~~vvaevevG-------lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELG-------LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccC-------CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 000011111100 0112236778888888888899999999875
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.68 E-value=3.7e-05 Score=65.70 Aligned_cols=258 Identities=14% Similarity=0.101 Sum_probs=132.3
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceee------eee-----------------ee------eeeeeeeecCC
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARES------LAN-----------------VT------IHKGLDFSADG 137 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~------~~~-----------------~~------~~~~~~~~~~~ 137 (408)
.|+.+.|.++..-|+++...|.|.+|.+...+... ... +. ...++......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999875443221 000 00 00011111111
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee--c------CcCCCceEEEEec----CCC---CEEEEe
Q 015371 138 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI--P------AHKSDVNTVCFAD----ETG---HLIFSG 202 (408)
Q Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~------~~~~~v~~l~~~~----~~~---~~l~~~ 202 (408)
+....+|++++.+.-| ++++|..+|.+.|.|++....+..- . .....++++.|.- .++ -++++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2235689999998555 8999999999999999877655442 1 1345688888871 222 478899
Q ss_pred cCCCeEEEEeccccccCCcccee----eecccCCeEEEE-ecCC-C-------------------CeEEEeecCCeEEEE
Q 015371 203 SDDSLCKVWDRRCFISKGRANGV----LMGHLEGITFID-SRRD-G-------------------RYFISNGKDQTTKLW 257 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i~~~~-~~~~-~-------------------~~l~~~~~d~~i~iw 257 (408)
...|.+.+|.+.- ...+..... ...+.++|..+. ++.+ | .-++....+..++++
T Consensus 162 Tn~G~v~~fkIlp-~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILP-SSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE--GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEec-CCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999998741 011211111 123445555544 2211 0 112333335567777
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc-cCCCcEEEEeeCCCeE
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY-STAQKYIYTGSSDNSV 336 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i 336 (408)
...+. +......... ..+..+.+.... ...+..|++-..+|.|
T Consensus 241 ~~~~~----------------------------------k~~~K~~~~~--~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 241 KPPKS----------------------------------KGAHKSFDDP--FLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -TT-------------------------------------EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred eCCCC----------------------------------cccceeeccc--cccceEEEEeecccCCceEEEEEECCCcE
Confidence 76552 1111111111 111111111000 1235678888899999
Q ss_pred EEEECCCCceeEEEccCC----CCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 337 YIYDLVSGAQVAKLDFHN----APVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
++|.+...+.+..++.+. ..+....++++|..++-.+.. .+.++.+
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 999999999988886532 345667889999977665543 4444444
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.65 E-value=2.4e-06 Score=73.18 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=78.0
Q ss_pred eEEEEEcC-CCCEEEEE----ecCCe----EEEEECCCCcceeee---cCcCCCceEEEEecCCCCEEEEecCCCeEEEE
Q 015371 144 IFSVKFST-DGQELVAA----GSDNF----IYVYDLQANKCSLRI---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 211 (408)
Q Consensus 144 i~~~~~~~-~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iw 211 (408)
..++.|+. +...+.+. +.+|. -++|++..++....- -.....|.+.+++ |+.+.++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEEEE
Confidence 45666765 33344433 22332 356776554422111 2367889999999 889999999999999999
Q ss_pred eccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 212 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 212 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
|.. ..+.......-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 287 D~~------~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 287 DTT------RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcC------CCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 954 22333334455678899999999999999999999999875
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.59 E-value=6.3e-05 Score=65.20 Aligned_cols=219 Identities=13% Similarity=0.143 Sum_probs=113.5
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
..+.++++|+|++++..+.....-+. ... .+- ...+.-...+|.+.++ +|+-...++|.|+.--+....... ...
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt-~~~-~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i-~~~ 108 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYT-ALA-WRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSI-KLP 108 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEE-TTT-TEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------S
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEE-ccC-Ccc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEE-cCC
Confidence 46889999999998876555433333 222 111 2235566788998554 677766888999732222111111 111
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
. .+..+-. |..|+..+. +.|.+||+.+++........ +|..+.|++++++++..+.+
T Consensus 109 ~---~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~----------------~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 109 F---SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS----------------AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp S----EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS-----------------E-EEEEE-TTSSEEEEE-S-
T ss_pred c---ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC----------------CCcEEEEECCCCEEEEEeCC
Confidence 1 2333322 877777664 48999999988764333322 37899999999999988754
Q ss_pred CeEEEEECCCC-----------cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC
Q 015371 163 NFIYVYDLQAN-----------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 231 (408)
Q Consensus 163 g~i~i~d~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 231 (408)
.+++++.... .....+......|.+.+|. .+ .++-.+.. .++.+- +.....+..-..
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d--~fiYtT~~-~lkYl~-------~Ge~~~i~~ld~ 233 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED--CFIYTTSN-HLKYLV-------NGETGIIAHLDK 233 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT--EEEEE-TT-EEEEEE-------TTEEEEEEE-SS
T ss_pred -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEE-cC--EEEEEcCC-eEEEEE-------cCCcceEEEcCC
Confidence 6778775433 0223333236789999998 44 44433434 777633 122223333345
Q ss_pred CeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 232 GITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 232 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
++.-+.+.+..+.+.....|+.+..+.+..
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 677778888778888888999998887764
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=1.2e-05 Score=69.13 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=79.1
Q ss_pred eEEEEEeCC-CCceEEEe----ecCcE----EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 87 TITDTSLSP-DQRFLVYA----SICAI----VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 87 ~v~~~~~~~-~~~~l~~~----~~dg~----i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
...++.|+- ++..+.+. +.+|. -.+|++...+......... .....+.+.+++|+...++
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-----------pL~s~v~~ca~sp~E~kLv 275 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-----------PLPSQVICCARSPSEDKLV 275 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-----------ecCCcceEEecCcccceEE
Confidence 456677776 33444433 22332 3456665554433222111 1122699999999999999
Q ss_pred EEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 158 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
.|+.||.|.+||...+... +....-.++.++|+ |++.++++|+..|.+.+||+-
T Consensus 276 lGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEecCCeEEEEEcCCCeee--eeeecccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence 9999999999998766332 33345678999999 999999999999999999974
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.55 E-value=2.9e-08 Score=84.91 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=129.0
Q ss_pred eEEEEEcC--CCCEEEEEecCCeEEEEECCCCcce--eeecCcCCCceEEEEecCCCCEEEEecC----CCeEEEEeccc
Q 015371 144 IFSVKFST--DGQELVAAGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRC 215 (408)
Q Consensus 144 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~~~~~----dg~i~iwd~~~ 215 (408)
+.|+++.- +...+++|..+|.|.+-.++...-. ...+++..+.++++|++-|.+.|++|-. |..+.|||+..
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 66666654 3357888889999999988654332 2346788999999999777788888743 56799999864
Q ss_pred cccCCccceeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccC
Q 015371 216 FISKGRANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294 (408)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (408)
.....+....+.+ ......+++|..+.+++.+|.....+.++|++.....
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~----------------------------- 189 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS----------------------------- 189 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-----------------------------
Confidence 4222222222222 4455668899989999999999999999999841100
Q ss_pred CCcceeeeecccceeeEEEEEeeccccC-CCcEEEEeeCCCeEEEEEC-CCC-ceeEEEccCC----CCeeeeeEeCCCC
Q 015371 295 HDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDL-VSG-AQVAKLDFHN----APVRDCCWHPIYP 367 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~-~~~-~~~~~~~~~~----~~v~~~~~~~~~~ 367 (408)
...+.. +.+....++| .++|+++-. ||.|-+||. .+- +++..+.... ..+..++|+|...
T Consensus 190 ----~~svnT--------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 190 ----VSSVNT--------KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred ----hhhhhh--------hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 000000 0001112333 356777665 999999993 332 2223332222 2489999999766
Q ss_pred -eEEeecCC-CcEEEEeeCCC
Q 015371 368 -MLISSSWD-CNIVRWEIPGI 386 (408)
Q Consensus 368 -~l~s~~~d-g~v~iw~~~~~ 386 (408)
.+++...| ++|+++++..-
T Consensus 257 glla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred chhhhhccCcceEEEeccccc
Confidence 56665554 78999998653
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.54 E-value=5.3e-05 Score=65.69 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=98.3
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
+....-....+.++|+|+++++++ ||...|+......... .+.-....|.+.++ +|+-...+.|.++.--
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 344555688999999999999854 7788888844332111 12455678998555 6666668889997432
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
.... ...+.... .+..+-. |..|+..+ ++.|.+||+++++.+..+... +|..+.|+ ++
T Consensus 98 ~~~~--~k~i~~~~-------------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~ 155 (443)
T PF04053_consen 98 KNEV--VKSIKLPF-------------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWS-DD 155 (443)
T ss_dssp EE-T--T-----SS--------------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE--TT
T ss_pred cccc--ceEEcCCc-------------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEE-CC
Confidence 2211 11111110 1333322 77777665 458999999999999988743 48999999 88
Q ss_pred CCEEEEecCCCeEEEEecccc-----ccCC--ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEE
Q 015371 196 GHLIFSGSDDSLCKVWDRRCF-----ISKG--RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL 256 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~-----~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 256 (408)
+++++..+.+ .+.+++.+.. ...+ .....+..-...|.+..|..+ .++-.... +++.
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 9999888765 6777764311 0001 123333333677888888755 44444434 5665
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.51 E-value=5.4e-05 Score=65.41 Aligned_cols=182 Identities=22% Similarity=0.250 Sum_probs=109.1
Q ss_pred ceEEEEEcCCCCEEEEEec---C-CeEEEEECCCCcceeeecCcCCCceEEEEecCCCC-EEEEecCCCeEEEE--eccc
Q 015371 143 GIFSVKFSTDGQELVAAGS---D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVW--DRRC 215 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~iw--d~~~ 215 (408)
.+..-.|+|+++.++.... . ..++++++.+++....+. ..+.-...+|+ |+++ ++++...||...+| |+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl~- 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDLD- 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCC-CCCCEEEEEECCCCCccEEEEcCC-
Confidence 4677789999987665532 2 469999999887655554 34444567899 5555 55566677765555 543
Q ss_pred cccCCccceeeecccCCeEEEEecCCCCeEEEeec-CCe--EEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 216 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 216 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
++....+....+.-..-.|+|||+.++..+. .|. |.++|.+...
T Consensus 271 ----~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----------------------------- 317 (425)
T COG0823 271 ----GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----------------------------- 317 (425)
T ss_pred ----CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----------------------------
Confidence 2223334443444446779999998877654 444 5555554411
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-Ce--EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeE
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NS--VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPML 369 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 369 (408)
...+.... .....+.+||||++|+..+.. |. |.+.|+.++..+..+. +........|.++++.+
T Consensus 318 ------~~riT~~~------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 318 ------VTRLTFSG------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMI 384 (425)
T ss_pred ------eeEeeccC------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceE
Confidence 11111111 111266899999999887753 44 7777777666444443 33344456778888755
Q ss_pred Eeec
Q 015371 370 ISSS 373 (408)
Q Consensus 370 ~s~~ 373 (408)
+..+
T Consensus 385 ~~~s 388 (425)
T COG0823 385 MFSS 388 (425)
T ss_pred EEec
Confidence 5443
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.50 E-value=4.8e-08 Score=83.64 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=133.7
Q ss_pred cCceeEEEEcCCC--CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEee----cCcEEEEE
Q 015371 40 NSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYAS----ICAIVNIV 112 (408)
Q Consensus 40 ~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~~w 112 (408)
...+.|+++.-+. ..++.|..+|.|.+-.+...... ......++....++++|++ |.+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3557888876644 57889999999999987654322 1122344556899999998 566677663 35579999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
|+.+.-..+........+ ......+++|..+.+++++|.....+.++|++... .....-.+..+..+...
T Consensus 135 di~s~ltvPke~~~fs~~---------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSS---------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccc---------cccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceec
Confidence 998763222222111110 11135588898888999999888899999997332 11112234566777888
Q ss_pred cCCCCEEEEecCCCeEEEEe-ccccccCCccceeeeccc----CCeEEEEecCCCC-eEEEeec-CCeEEEEeCCC
Q 015371 193 DETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGHL----EGITFIDSRRDGR-YFISNGK-DQTTKLWDIRK 261 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~-~l~~~~~-d~~i~iwd~~~ 261 (408)
|-.++++++-. ||.|.+|| .++ ...++..+.... ..+..++|.|... ++++... .++|+++|+..
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 55788887766 99999999 432 223333332222 2488999998533 4555554 57899999876
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.00028 Score=54.44 Aligned_cols=143 Identities=15% Similarity=-0.003 Sum_probs=92.4
Q ss_pred CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcce
Q 015371 97 QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS 176 (408)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 176 (408)
..+++.|+..+.+.--|..+++.......... |.+-+.- -|.+++.|+..|.+++.+.++|+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R---------------iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR---------------IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce---------------eeeeeEE-ECCEEEEEEccCcEEEEEecchhhe
Confidence 45667788888888888888776543332221 2222221 4667999999999999999999888
Q ss_pred eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEE
Q 015371 177 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL 256 (408)
Q Consensus 177 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 256 (408)
..+.. ...|.+-+-..+++.++..|+.|++.+..|.+ ....+...+-..+...+-+..|-...|..+...|.+.-
T Consensus 87 w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 87 WNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred eeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence 77754 33444433334789999999999999999975 55555555444444444555663333444455555544
Q ss_pred EeCC
Q 015371 257 WDIR 260 (408)
Q Consensus 257 wd~~ 260 (408)
-..+
T Consensus 162 vt~~ 165 (354)
T KOG4649|consen 162 VTKN 165 (354)
T ss_pred EccC
Confidence 4433
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.9e-05 Score=63.28 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=65.3
Q ss_pred eeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCC-ceEEEeecCcEEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIV 112 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w 112 (408)
.+.+|...|..++|||... ++..++.+..|+|.|+++...+...... ..+.+++|.-|. ++|..|-.+|.|.+|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcceeEEeccCceEEEE
Confidence 4567888899999999877 7888899999999999998666554443 369999998765 567777889999999
Q ss_pred ECCCCce
Q 015371 113 DVGSSAR 119 (408)
Q Consensus 113 ~~~~~~~ 119 (408)
|+...+.
T Consensus 264 D~R~~~~ 270 (463)
T KOG1645|consen 264 DMRQPEG 270 (463)
T ss_pred EccCCCc
Confidence 9986653
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.45 E-value=0.0001 Score=63.72 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=97.9
Q ss_pred eEEEEEeCCCCceEEEee---cC-cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-
Q 015371 87 TITDTSLSPDQRFLVYAS---IC-AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 161 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~---~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 161 (408)
.+..-+|+|+++.++... .. ..+.++++.+++.........+ -...+|+|||+.|+.+..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---------------~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---------------NGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---------------cCCccCCCCCCEEEEEECC
Confidence 577788999998877553 22 4689999998887666554443 335689999998876654
Q ss_pred CC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 162 DN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 162 dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
|| .|+++|+.++. ...+....+.-+.-.|+ |+|+.++ +.+..|.-.||-.+ ..+.....+......-..-.|
T Consensus 259 dg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~---~~g~~~~riT~~~~~~~~p~~ 333 (425)
T COG0823 259 DGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYD---LEGSQVTRLTFSGGGNSNPVW 333 (425)
T ss_pred CCCccEEEEcCCCCc-ceecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEEC---CCCCceeEeeccCCCCcCccC
Confidence 44 57788887776 33354333444466788 6666555 44556655555443 133333444444333347789
Q ss_pred cCCCCeEEEeecC-Ce--EEEEeCCC
Q 015371 239 RRDGRYFISNGKD-QT--TKLWDIRK 261 (408)
Q Consensus 239 ~~~~~~l~~~~~d-~~--i~iwd~~~ 261 (408)
+|||++|+..+.. |. |.+.|+.+
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCC
Confidence 9999998887743 43 55555544
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.6e-05 Score=69.56 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=101.2
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.|.--+++..+++++.|+..|.+.+|+-..+.......- .. ...+.....+++..++|+|+..|.|.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-~~------------~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-GA------------TGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhccccc-Cc------------cceEEEEEecchhHhhhhhcCCceEE
Confidence 466667777899999999999999999877764332221 11 11466777888888999999999999
Q ss_pred EEECCCCcceeee------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 167 VYDLQANKCSLRI------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 167 i~d~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
++-+..+.+.... +.|...|++++|+ +++..+++|...|+|..-.+..........+.+....+.|..+...
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence 9988764322211 3478899999999 9999999999999999887652111112223334445677777765
Q ss_pred CCCeEEE
Q 015371 241 DGRYFIS 247 (408)
Q Consensus 241 ~~~~l~~ 247 (408)
++.+|++
T Consensus 180 q~~LLVS 186 (726)
T KOG3621|consen 180 QSYLLVS 186 (726)
T ss_pred cceehHh
Confidence 3333443
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.41 E-value=0.00084 Score=60.14 Aligned_cols=258 Identities=11% Similarity=0.064 Sum_probs=133.5
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEee---------cCcEEEEEECCCCceee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYAS---------ICAIVNIVDVGSSARES 121 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~---------~dg~i~~w~~~~~~~~~ 121 (408)
..++.++.++.|+-+|.++++.+.+........ .-..+.-+| .+..++.++ .+|.+..+|..+++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 567778889999999999997776654322100 000111122 124444443 36788899999887654
Q ss_pred eeeeeeeeeeeeecCCCC-----Cc-cce-EEEEEcCCCCEEEEEecCC------------------eEEEEECCCCcce
Q 015371 122 LANVTIHKGLDFSADGDE-----DE-FGI-FSVKFSTDGQELVAAGSDN------------------FIYVYDLQANKCS 176 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-----~~-~~i-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~ 176 (408)
.................. +. ..+ ...++.+.+..+++++.++ .|.-+|.++++.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 433321111000000000 00 001 1244555566777777654 7999999999988
Q ss_pred eeecCcCCCc------eEEEEe---cCCC---CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe
Q 015371 177 LRIPAHKSDV------NTVCFA---DETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244 (408)
Q Consensus 177 ~~~~~~~~~v------~~l~~~---~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 244 (408)
..++.-.... ....+. ..++ ..++.++.+|.+...|.+ +++.+-..... ...+..+| ..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~~ 340 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--GL 340 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--ce
Confidence 8764211111 111111 0123 267888899999999965 55555443211 11123333 22
Q ss_pred EEEe------------------ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccc
Q 015371 245 FISN------------------GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS 306 (408)
Q Consensus 245 l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
+..+ ..+|.+.-.|+.+++......... ...........
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~-----------------------~~~~~~~g~~~ 397 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGT-----------------------IRDSWNIGFPH 397 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCc-----------------------cccccccCCcc
Confidence 2221 234667777776643222211000 00000000000
Q ss_pred ceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 307 VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
+.......+.+|++++.||.|+.+|.++|+.+-+++.
T Consensus 398 ---------~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 398 ---------WGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ---------cCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0000011367899999999999999999999888764
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=9.3e-05 Score=65.47 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=68.7
Q ss_pred ceEEEEEcCCCCEEEEEec-CCeEEEEECCCCcc------------eeeecCcCCCceEEEEecCCCCEEEEecCCCeEE
Q 015371 143 GIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKC------------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 209 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 209 (408)
....+.++|||+++++++. +.+|.|.|+++.+. .....- .......+|. ++++...+-..|..|.
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD-g~G~aytslf~dsqv~ 399 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD-GRGNAYTTLFLDSQIV 399 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC-CCCCEEEeEeecceeE
Confidence 4778999999999888776 88999999987553 222222 2334566787 7788888888999999
Q ss_pred EEecccc------ccCCccceeeecccCCeE-----EEEecCCCCeEEEeec
Q 015371 210 VWDRRCF------ISKGRANGVLMGHLEGIT-----FIDSRRDGRYFISNGK 250 (408)
Q Consensus 210 iwd~~~~------~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~ 250 (408)
.|++... ......+..+.-|-.+-. .=.-.|+|++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9997531 001223333333332222 2224678888887654
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.00098 Score=54.60 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=90.2
Q ss_pred ceeEEEEcCCCCeEEEEe----------CCCcEEEEEcCCCeeEEEeccccccee----eEEEEEeCCCCceEEEeec--
Q 015371 42 RVYTSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKALRW----TITDTSLSPDQRFLVYASI-- 105 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~-- 105 (408)
..-.+..|||++.+++++ ..-.|.+||..+-.....+.....+.. ....++++.|++++++...
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 344577899999988753 234699999998755554443332111 2234678889998887643
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC-CCcceeee----c
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRI----P 180 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~ 180 (408)
...|.|.|+...+.......+. +..+--+. ...+.+-|.||.+.-..+. .|+...+. .
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PG----------------C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPG----------------CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTS----------------EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred CCeEEEEECCCCceeeeecCCC----------------EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 4578899998887644333322 22222222 2457777889999888886 45443221 1
Q ss_pred CcCCCc-eEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 181 AHKSDV-NTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 181 ~~~~~v-~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
....++ ..-++. ..+..++--+.+|.|+-.|+.
T Consensus 180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEET
T ss_pred CCCcccccccceE-CCCCeEEEEecCCEEEEEecc
Confidence 112222 233444 444455557788999988874
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.33 E-value=0.00059 Score=54.18 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=110.5
Q ss_pred ceEEEEEcCCCC-EEEEEecCCeEEEEECCCCcceeeecCc-CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 143 GIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 143 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
.+..++|.|+.. ++++....+.|..++. +|+.+.++.-. .+....+++. .++.++++.-.++.+.++++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 499999999755 5666666889988897 47777776433 3568899998 777777776678999999874211111
Q ss_pred cc--ceee-----ecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 221 RA--NGVL-----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 221 ~~--~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.. ...+ ..++..+-.++|.|.++.|+.+-+..-..+|.++.......
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-------------------------- 154 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-------------------------- 154 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence 11 1111 12456689999999988888887776677777654110000
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEeeCCCeEEEEECCCCceeEEEccCC---------CCeeeeeEe
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN---------APVRDCCWH 363 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~ 363 (408)
-................-...+.++| .+++++....+..|..+| .+|+.+..+.-.. ...-.++|.
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ---eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 00000000000000000011112333 467778888888999999 6787766654222 246779999
Q ss_pred CCCCeEEeecCCCcEEEE
Q 015371 364 PIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 364 ~~~~~l~s~~~dg~v~iw 381 (408)
++|++.++ ++-+..+++
T Consensus 231 ~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp TT--EEEE-ETTTEEEEE
T ss_pred CCCCEEEE-cCCceEEEe
Confidence 99975554 466665554
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.30 E-value=0.0021 Score=56.62 Aligned_cols=202 Identities=17% Similarity=0.176 Sum_probs=107.5
Q ss_pred ceeEEEEcCCCCeEEEE-eCC----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC----------
Q 015371 42 RVYTSQFSNDGSFFVAA-SQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---------- 106 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~-~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------- 106 (408)
.+....+||||+++|.+ +.. ..+++.|+.+++.+...+... ....+.|.++++.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999999865 333 459999999986554332221 12339999998887766432
Q ss_pred -cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---C-CeEEEEECCCC----ccee
Q 015371 107 -AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---D-NFIYVYDLQAN----KCSL 177 (408)
Q Consensus 107 -g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~ 177 (408)
..|+.|.+.+........+..... ......+..++|+++++.... + ..+++.++..+ ....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDE----------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTC----------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred CcEEEEEECCCChHhCeeEEeecCC----------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 347788887765432222221111 112567888999998876544 2 46888898775 2233
Q ss_pred eecCcCCCce-EEEEecCCCCEEEEec---CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEE-eecCC
Q 015371 178 RIPAHKSDVN-TVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS-NGKDQ 252 (408)
Q Consensus 178 ~~~~~~~~v~-~l~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~ 252 (408)
.+......+. .+... ++.+++... .++.|.-.++..... ......+..+...+.-..+...+.+|+. ...++
T Consensus 271 ~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 3333333343 34433 344444332 245666666542111 0122255556554333333333554544 44444
Q ss_pred --eEEEEeCC
Q 015371 253 --TTKLWDIR 260 (408)
Q Consensus 253 --~i~iwd~~ 260 (408)
.|+++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 47888887
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.30 E-value=0.00098 Score=57.18 Aligned_cols=209 Identities=13% Similarity=0.134 Sum_probs=115.7
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEE----------------------------------------Eeccc
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ----------------------------------------KDIET 81 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~----------------------------------------~~~~~ 81 (408)
.|+.+.|+++..-||+|...|.|.||.+..++... .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999999875431111 00011
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-----CC---
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-----DG--- 153 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~--- 153 (408)
....++|++++.| |=.++++|..+|.+.|.|++.........+.. ..........++++.|.- |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~------~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE------SFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc------cccccccccCeeEEEEEEEecCCCcccc
Confidence 1124678899887 56689999999999999998776644433332 001112233577777762 33
Q ss_pred CEEEEEecCCeEEEEECC--C-Ccce----eeecCcCCCceEEEEecCC---------------------CCEEEEecCC
Q 015371 154 QELVAAGSDNFIYVYDLQ--A-NKCS----LRIPAHKSDVNTVCFADET---------------------GHLIFSGSDD 205 (408)
Q Consensus 154 ~~l~~~~~dg~i~i~d~~--~-~~~~----~~~~~~~~~v~~l~~~~~~---------------------~~~l~~~~~d 205 (408)
-.+++|+..|.+.+|.+- . +... .....+.++|..+.....+ ..++++ ..+
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe 234 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSE 234 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-S
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-Ecc
Confidence 478899999999999874 1 2111 1112456677666532111 113333 346
Q ss_pred CeEEEEeccccccCCccceeeecccCCeEEEEe-----cCCCCeEEEeecCCeEEEEeCCCC
Q 015371 206 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDS-----RRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
..++++... ..+.........-....+.+ ...+..|++-..+|.+++|.+...
T Consensus 235 ~~irv~~~~----~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 235 SDIRVFKPP----KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp SEEEEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cceEEEeCC----CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 679999853 33333333222112223334 235667888899999999999873
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.28 E-value=0.0011 Score=56.00 Aligned_cols=218 Identities=15% Similarity=0.135 Sum_probs=117.6
Q ss_pred cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC----CCEEEEEec---------C-CeEEEEECCC
Q 015371 107 AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD----GQELVAAGS---------D-NFIYVYDLQA 172 (408)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~---------d-g~i~i~d~~~ 172 (408)
..|++.|..+.+......+...+. ...+..+.+..+ ..++++|+. . |.|.++++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~----------~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~ 71 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEH----------VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISE 71 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEE----------EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECS
T ss_pred cEEEEEeCCCCeEEEEEECCCCce----------EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEc
Confidence 357888887776544444433322 112334444432 467887765 2 8999999987
Q ss_pred C----cceeee--cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec--ccCCeEEEEecCCCCe
Q 015371 173 N----KCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRY 244 (408)
Q Consensus 173 ~----~~~~~~--~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 244 (408)
. ..+..+ ....++|++++-. ++. |+++. .+.|.+|++. ..+.+..... ....+.++... +++
T Consensus 72 ~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~~~ 141 (321)
T PF03178_consen 72 SPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--KNY 141 (321)
T ss_dssp S-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--TTE
T ss_pred ccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--ccE
Confidence 4 112211 2357899999876 344 44433 4789999986 2221222222 22355666555 668
Q ss_pred EEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC
Q 015371 245 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 324 (408)
Q Consensus 245 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 324 (408)
+++|.....+.++..+.. ...+..+........+ .+..+-+++
T Consensus 142 I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~~~v----~~~~~l~d~ 184 (321)
T PF03178_consen 142 ILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQPRWV----TAAEFLVDE 184 (321)
T ss_dssp EEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-BEE----EEEEEE-SS
T ss_pred EEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCCccE----EEEEEecCC
Confidence 999988888888755431 1112222222222222 222343345
Q ss_pred cEEEEeeCCCeEEEEECCC-------Cc--eeEEEcc-CCCCeeee---eEeCC--CC------eEEeecCCCcEEEE
Q 015371 325 KYIYTGSSDNSVYIYDLVS-------GA--QVAKLDF-HNAPVRDC---CWHPI--YP------MLISSSWDCNIVRW 381 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~-------~~--~~~~~~~-~~~~v~~~---~~~~~--~~------~l~s~~~dg~v~iw 381 (408)
+.++.+..+|.+.++.... +. ....... ....|+++ ++.|. +. .++-++.+|.|...
T Consensus 185 ~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 185 DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6899999999999998752 12 2222222 24567777 55552 22 37778889998844
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.28 E-value=0.00086 Score=61.87 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=92.2
Q ss_pred CceEEEe-ecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-----CCCEEEEEecCCeEEEEEC
Q 015371 97 QRFLVYA-SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-----DGQELVAAGSDNFIYVYDL 170 (408)
Q Consensus 97 ~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~ 170 (408)
.++|+.. .....++-.|++.++...... .+... +|..++-.. +....+.|-.+..+..||.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~--~~~~~-----------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDp 559 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWK--VHDDI-----------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDP 559 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEee--cCCCc-----------ceeEecccccccccCCCceEEEECCCceEEecc
Confidence 3444433 345678888999888744433 33321 233333211 1234566777889999998
Q ss_pred CCCc--ceee-e--cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeE
Q 015371 171 QANK--CSLR-I--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 245 (408)
Q Consensus 171 ~~~~--~~~~-~--~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 245 (408)
+-.. ++.. . -......+|++-+ . .-+||+|+.+|.||+||- ........+.+-..+|..|..+.||+++
T Consensus 560 R~~~~k~v~~~~k~Y~~~~~Fs~~aTt-~-~G~iavgs~~G~IRLyd~----~g~~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 560 RLSGNKLVDSQSKQYSSKNNFSCFATT-E-DGYIAVGSNKGDIRLYDR----LGKRAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred CCCCCceeeccccccccCCCceEEEec-C-CceEEEEeCCCcEEeecc----cchhhhhcCCCCCCCeeEEEecCCCcEE
Confidence 7532 2210 1 1234456777765 4 457999999999999993 1233444566778999999999999988
Q ss_pred EEeecCCeEEEEeCC
Q 015371 246 ISNGKDQTTKLWDIR 260 (408)
Q Consensus 246 ~~~~~d~~i~iwd~~ 260 (408)
++.+ +..|.+++..
T Consensus 634 laTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 634 LATC-KTYLLLIDTL 647 (794)
T ss_pred EEee-cceEEEEEEe
Confidence 8766 5678888864
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.27 E-value=0.0019 Score=54.64 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=105.1
Q ss_pred cEEEEEcCCCeeEEEecc-cccceeeEEEEEeCCC----CceEEEeec---------C-cEEEEEECCCC-----ceeee
Q 015371 63 NIKVYNVDKNWKIQKDIE-TKALRWTITDTSLSPD----QRFLVYASI---------C-AIVNIVDVGSS-----ARESL 122 (408)
Q Consensus 63 ~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~----~~~l~~~~~---------d-g~i~~w~~~~~-----~~~~~ 122 (408)
.|++.|..+.+.+..... ..++-..+..+.+..+ ..+|++|+. . |.+.++++... +.+..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577888766655533322 2222223334444432 577777753 2 89999999874 22222
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceeeec-CcCCCceEEEEecCCCCEEE
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIP-AHKSDVNTVCFADETGHLIF 200 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~v~~l~~~~~~~~~l~ 200 (408)
..... + .+|++++-- ++ +|+++. .+.|.+|++...+ ....-. .....+.++... +++++
T Consensus 83 ~~~~~-~------------g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~ 143 (321)
T PF03178_consen 83 HSTEV-K------------GPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYIL 143 (321)
T ss_dssp EEEEE-S------------S-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEE
T ss_pred EEEee-c------------CcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEE
Confidence 22211 2 268888766 44 455544 5889999998777 333222 123366666665 66999
Q ss_pred EecCCCeEEEEeccccccCCccceeee--cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 201 SGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+|.....+.++..+. ....+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 144 vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 144 VGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 999888888886541 222222222 2344578888886667899999999999998764
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.22 E-value=0.003 Score=55.00 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=99.7
Q ss_pred EEEEcCCCCeEEEEeCC----------C-cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 45 TSQFSNDGSFFVAASQE----------S-NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~d----------g-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.++.+|.|-.+|....+ . .|.||+.... .+....-.. +.|.++.|+.+.+ |++...||.++++|
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVYD 107 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEEe
Confidence 34566666666665433 1 4999986544 454433322 4799999998654 55667899999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceeee---cCcCC-----
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRI---PAHKS----- 184 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~~~~----- 184 (408)
+.... . +......... .-....+....+..+| ++.-..++.+++.+-.... ....+ .....
T Consensus 108 ~~G~~---~--fsl~~~i~~~---~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~ 177 (410)
T PF04841_consen 108 LFGEF---Q--FSLGEEIEEE---KVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWW 177 (410)
T ss_pred CCCce---e--echhhhcccc---CcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccc
Confidence 86443 1 1111000000 0000012222333355 3333445555554332221 11111 11000
Q ss_pred -CceE-EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 185 -DVNT-VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 185 -~v~~-l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.... ..++ .+....+....++.+.+.+-. .... + ...+++..+++||++++++.-..+|.+.+....-
T Consensus 178 ~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 178 PSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred cccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 0111 1233 334444444555566644421 1111 1 2346899999999999999999999988876543
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.17 E-value=0.0026 Score=52.49 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=87.5
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeee-eee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV-TIH 128 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~ 128 (408)
..++.|+.|+.+| +.+++.............. .|..+...|+-+.|++-+ |+.+.++++..-........ ...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999998 9999983332222222222 399999999888777665 59999999876544331110 000
Q ss_pred eeeeeecCCCCCccceEEEE--EcCCCCEEEEEecCCeEEEEECCCC-----cceeeecCcCCCceEEEEecCCCCEEEE
Q 015371 129 KGLDFSADGDEDEFGIFSVK--FSTDGQELVAAGSDNFIYVYDLQAN-----KCSLRIPAHKSDVNTVCFADETGHLIFS 201 (408)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~~ 201 (408)
+... ....-.....+...+ -...+...++......|.+|..... +....+. -...+.+++|. ++.++.
T Consensus 79 ~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v 153 (275)
T PF00780_consen 79 KSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICV 153 (275)
T ss_pred cccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEE
Confidence 0000 000000111344444 1123333344444568888887653 2334443 35788999998 567777
Q ss_pred ecCCCeEEEEecc
Q 015371 202 GSDDSLCKVWDRR 214 (408)
Q Consensus 202 ~~~dg~i~iwd~~ 214 (408)
|..+ ...+.|+.
T Consensus 154 ~~~~-~f~~idl~ 165 (275)
T PF00780_consen 154 GTSK-GFYLIDLN 165 (275)
T ss_pred EeCC-ceEEEecC
Confidence 7655 47778865
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.12 E-value=0.00069 Score=61.41 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=105.9
Q ss_pred CceeEEEEcCCCCeEEEEe------CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-cEEEEEE
Q 015371 41 SRVYTSQFSNDGSFFVAAS------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVNIVD 113 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~w~ 113 (408)
..+...++||||+.+|... .|+.-.||-...+........ +. ..+.-.|+|||+.|++.... ..+++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4688999999999887665 244444554332222222222 11 37778999999988877543 2233332
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEE---EECCCCccee----ee-cCcCCC
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV---YDLQANKCSL----RI-PAHKSD 185 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~----~~-~~~~~~ 185 (408)
-............... ... .....|..+.|+|||.+++... +|.|++ -....|+... .+ ..-...
T Consensus 426 ~~~~gql~~~~vd~ge---~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASA---VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCch---hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 2111111111110000 000 1122699999999999988876 578877 4444554111 12 223334
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec--ccCCeEEEEecCCCCeEEEeecCCeEEE
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKL 256 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i 256 (408)
+.++.|. .++.++ ++..++.-.+|.+.- .+.....+.. ...++..++-+++ .++....++.+.+
T Consensus 499 ~~~l~W~-~~~~L~-V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWR-TGDSLV-VGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cccceEe-cCCEEE-EEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 6889999 666654 555555555666531 1222212122 2566777777763 3555555664433
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.10 E-value=1e-05 Score=43.59 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=34.4
Q ss_pred CceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 344 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.0069 Score=54.65 Aligned_cols=195 Identities=12% Similarity=0.113 Sum_probs=106.6
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccc-eeeEEE-------EEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITD-------TSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~v~~-------~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
+..++.++.++.|+-.|..+++.+.+....... .....+ +++ .+..++.++.++.+.-.|..+++.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 456677777888999999998777654332110 001101 122 2346777888999999999998875443
Q ss_pred eeeeeeeeeeecCCCCCccceEE-EEEcCCCCEEEEEec------CCeEEEEECCCCcceeeecCcCC------------
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKS------------ 184 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~------------ 184 (408)
....... ...+.+ -... ++ .++++.. +|.|..+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~----------~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~ 214 (527)
T TIGR03075 147 KNGDYKA----------GYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPV 214 (527)
T ss_pred ccccccc----------cccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccc
Confidence 3221110 001111 0111 34 4555432 68999999999988766532110
Q ss_pred -------------------Cc-eEEEEecCCCCEEEEecCC-----C-----------eEEEEeccccccCCccceeeec
Q 015371 185 -------------------DV-NTVCFADETGHLIFSGSDD-----S-----------LCKVWDRRCFISKGRANGVLMG 228 (408)
Q Consensus 185 -------------------~v-~~l~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~ 228 (408)
.+ ..+++. +...+++.+..+ + .|.-.|++ +++..-.++.
T Consensus 215 ~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~Q~ 289 (527)
T TIGR03075 215 GGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHYQT 289 (527)
T ss_pred ccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEeeeC
Confidence 01 123555 445556655533 2 34444432 4554444433
Q ss_pred ccCC---------eEEEEecCCCC---eEEEeecCCeEEEEeCCCCcCc
Q 015371 229 HLEG---------ITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 229 ~~~~---------i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
.... ..-+....+|+ .++.+..+|.+.+.|-++++..
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2111 12222334665 7888999999999999887653
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=1.7e-05 Score=59.70 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=94.2
Q ss_pred EEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccc
Q 015371 198 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 277 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 277 (408)
.+..-+.||.|+-++++...... ..-.-+.....-+ .-+..+++|+.+|.|.+|........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~---rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~------------ 93 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC---RSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAH------------ 93 (238)
T ss_pred hhccccCCcccccchhhhhhhhh---hhhhhhhcceeec---ccCceEEeecccceEEEecCCccchH------------
Confidence 45556778888888876322111 1111122221112 23456899999999999987631100
Q ss_pred cceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCC-CC
Q 015371 278 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-AP 356 (408)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 356 (408)
...+.... ......+ ....++.+..+++.||.|+.|++.-.+.+.....|. .+
T Consensus 94 ---------------------~d~~~s~~--e~i~~~I---p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 94 ---------------------SDRVCSGE--ESIDLGI---PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred ---------------------HHhhhccc--ccceecc---ccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 00000000 0000011 112246688999999999999999888888887787 67
Q ss_pred eeeeeEeCCCCeEEee--cCCCcEEEEeeCCCCCCCc
Q 015371 357 VRDCCWHPIYPMLISS--SWDCNIVRWEIPGIGEAPL 391 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~--~~dg~v~iw~~~~~~~~~~ 391 (408)
+..+..+..++.++.+ |.|..++.|++......+.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~ 184 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESP 184 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhccCc
Confidence 7777777788888888 9999999999987655443
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0071 Score=52.32 Aligned_cols=261 Identities=17% Similarity=0.162 Sum_probs=155.4
Q ss_pred ceeEEEEcCCCCeEEEEe-CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCce
Q 015371 42 RVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (408)
....+.+.+++..+.... ....+..-+.. ............ .....++.++.+..+. +...++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGG--VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCC--ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 566678888885544443 22245555544 222222111111 2345678888887554 444568999999666554
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCCcceeeecCcCCCceEEEEecCCC
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 196 (408)
........ ....++++++++.+.++.. ++.+.+.|-.+++.......-..+ ..+++. +++
T Consensus 109 ~~~~~vG~---------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p~g 171 (381)
T COG3391 109 LGSIPVGL---------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-PDG 171 (381)
T ss_pred eeEeeecc---------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-CCC
Confidence 22222111 2668999999988888766 689999999988888776544444 889999 777
Q ss_pred CEEEEe-cCCCeEEEEeccccccCCccce-e---eecccCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCcccc
Q 015371 197 HLIFSG-SDDSLCKVWDRRCFISKGRANG-V---LMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTD 268 (408)
Q Consensus 197 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~ 268 (408)
+.++.. ..++.|.+.|.. ...... . ...-...-..+.++|+|+.+.+.... +.+...|..+....
T Consensus 172 ~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~--- 244 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT--- 244 (381)
T ss_pred CeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE---
Confidence 755544 478899999954 222211 0 11222344678899999966555443 47888887762211
Q ss_pred ccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-CeEEEEECCCCcee
Q 015371 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSGAQV 347 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~ 347 (408)
..-..-. .. .......+|+|+++.+.... +.+.+.|..+....
T Consensus 245 -------------------------------~~~~~~~----~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 245 -------------------------------ATDLPVG----SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred -------------------------------Eeccccc----cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 1000000 00 11223567789988887554 88999999888777
Q ss_pred EEEccCC---CCeeeeeEeCC
Q 015371 348 AKLDFHN---APVRDCCWHPI 365 (408)
Q Consensus 348 ~~~~~~~---~~v~~~~~~~~ 365 (408)
....... ..+..+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 289 KTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeecccccccccceeccceee
Confidence 6654332 23455555543
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=0.0043 Score=49.27 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=115.8
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.......-+ ....+.+..++++.++--.++.+.++.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4555666999999999999888887777777766666555554333322 35668888888888887788888888887
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCC-ccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceee---ecCc-------CC
Q 015371 116 SSARESLANVTIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR---IPAH-------KS 184 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-------~~ 184 (408)
.......... ..+......+ ......++|.|....|+.+-...-+.||.+........ ...+ -.
T Consensus 159 ~~t~~~~~~~-----~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 159 ADTTVISAKV-----QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred CCccEEeccc-----eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 6533211111 0111111111 34688999999999999988877777777653321111 1111 24
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
.|.++.|.+..+.+++-+.+++.+.-.|..
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecC
Confidence 578889998889999999999999888863
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0092 Score=51.64 Aligned_cols=200 Identities=14% Similarity=0.077 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCEEEEEec-CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC---CCeEEEEeccccccC
Q 015371 144 IFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISK 219 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 219 (408)
...+++++.+..+++... ++.|.+.|..+.+.......- .....++++ +++..+.++.. ++++.+.|. ..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~----~t 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVD-PDGKYVYVANAGNGNNTVSVIDA----AT 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEEC-CCCCEEEEEecccCCceEEEEeC----CC
Confidence 457788888886655544 589999998777766665432 266889998 66655555544 688888884 35
Q ss_pred CccceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcc
Q 015371 220 GRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 298 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
.........-..+ ..+++.|+|+.+.... .++.|.+.|.......
T Consensus 150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~--------------------------------- 195 (381)
T COG3391 150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV--------------------------------- 195 (381)
T ss_pred CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee---------------------------------
Confidence 5555553333334 8899999999665554 6889999997662211
Q ss_pred eeeeecccceeeEEEEEeeccccCCCcEEEEeeCC---CeEEEEECCCCceeEEEccCCC-CeeeeeEeCCCCeEEeec-
Q 015371 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNA-PVRDCCWHPIYPMLISSS- 373 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~- 373 (408)
. .............+...++++|.++...... +.+...|..++.....-..-.. ....+..+|+|..+....
T Consensus 196 --~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 196 --R-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred --c-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 0 0000001111122333677888866655543 5899999988877665221122 456789999999877763
Q ss_pred CCCcEEEEeeCCC
Q 015371 374 WDCNIVRWEIPGI 386 (408)
Q Consensus 374 ~dg~v~iw~~~~~ 386 (408)
..+.+.+-|..+.
T Consensus 273 ~~~~V~vid~~~~ 285 (381)
T COG3391 273 QGGTVSVIDGATD 285 (381)
T ss_pred CCCeEEEEeCCCC
Confidence 3477888776654
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.97 E-value=0.0015 Score=43.81 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=67.3
Q ss_pred eEEEEEcC---CC-CEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 144 IFSVKFST---DG-QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 144 i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
|+++++.. || +.|++|+.|..|++|+- .+.+..+.. ...|++|+-. . ...|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~-~-~~~F~Y~l~NGTVGvY~~------ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSL-G-GGRFAYALANGTVGVYDR------ 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEc-C-CCEEEEEecCCEEEEEeC------
Confidence 45555544 33 57999999999999984 355666663 5678888876 3 367999999999999983
Q ss_pred CccceeeecccCCeEEEEecC-C--C-CeEEEeecCCeEE
Q 015371 220 GRANGVLMGHLEGITFIDSRR-D--G-RYFISNGKDQTTK 255 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~d~~i~ 255 (408)
...+-..+. ...++++.+.. + | .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333333332 33366665443 2 2 2688888888764
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.01 Score=51.69 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=96.6
Q ss_pred eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccc--cCCccceeeecccCCeEEEEecCC
Q 015371 164 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--SKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
.|.+|+.. |+.+.++.-..+.+.++.|+ .+ ..|++...||.+++||+.... ..+.......-....+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt-~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWT-DD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEEC-CC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 59999874 66666664444899999998 54 455566789999999974111 000111111111122222333334
Q ss_pred CCeEEEeecCCeEEEEeCCCCc-Ccc---ccccccccccccce----eecccccceeeccCCCcceeeeecccc-eeeEE
Q 015371 242 GRYFISNGKDQTTKLWDIRKMS-SNT---TDNSRLRDYDWDYR----WMEYPSYARRLKHPHDQSLATYKGHSV-LRTLI 312 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~-~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 312 (408)
|-.++ ..++.+.+.+--... ... ..........+... ..........+....+..+..+..+.. .....
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~ 216 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSD 216 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCC
Confidence 53333 334444433221111 000 00000000000000 001111112222223333333332221 00011
Q ss_pred EEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-CCCeeeeeEeCCCC
Q 015371 313 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYP 367 (408)
Q Consensus 313 ~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 367 (408)
..+..+++||+++++|.-..+|.+.+.+..-.+.+.++... ......+.|.-+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 23456678999999999999999999987666666666543 34566777776543
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.9e-05 Score=64.93 Aligned_cols=80 Identities=9% Similarity=0.129 Sum_probs=63.9
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEE-EEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTIT-DTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
-.-.|.-+.|+|.-.++|++..+|.+.+..++ ...+..+..... +++ +++|.|||+.||+|-.||+|++.|++++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~---~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE---NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC---ccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34568889999999999999999999998887 334444332222 455 9999999999999999999999999988
Q ss_pred ceeee
Q 015371 118 ARESL 122 (408)
Q Consensus 118 ~~~~~ 122 (408)
.....
T Consensus 95 ~~l~~ 99 (665)
T KOG4640|consen 95 GRLVS 99 (665)
T ss_pred Cceec
Confidence 76433
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.94 E-value=0.012 Score=51.83 Aligned_cols=251 Identities=16% Similarity=0.157 Sum_probs=125.8
Q ss_pred eEEEEEeCCCCceEEEe-ecCc----EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 87 TITDTSLSPDQRFLVYA-SICA----IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~-~~dg----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
.+....++|+++++|.+ +..| .++++|+.+++.... .+... ....+.|.++++.|+....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~--------------~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENP--------------KFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEE--------------ESEEEEECTTSSEEEEEEC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccccc--------------ccceEEEeCCCCEEEEEEe
Confidence 45578899999999865 3333 699999999865322 11111 1234999999887776653
Q ss_pred CC-----------eEEEEECCCCcce--eeecCcCCC--ceEEEEecCCCCEEEEecCC----CeEEEEeccccccCCcc
Q 015371 162 DN-----------FIYVYDLQANKCS--LRIPAHKSD--VNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGRA 222 (408)
Q Consensus 162 dg-----------~i~i~d~~~~~~~--~~~~~~~~~--v~~l~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~ 222 (408)
+. .|+.|.+.+.... ..+...... ...+..+ +++++++..+.. ..+.+.|+.........
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 32 4788888766433 344443333 4577777 788877654332 34666675421001223
Q ss_pred ceeeecccCCeE-EEEecCCCCeEEEeec---CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcc
Q 015371 223 NGVLMGHLEGIT-FIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 298 (408)
Q Consensus 223 ~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
...+......+. .+... .+.+++.... ++.|...++...... ..
T Consensus 269 ~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-------------------------------~~ 316 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA-------------------------------EW 316 (414)
T ss_dssp EEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG-------------------------------GE
T ss_pred cEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc-------------------------------cc
Confidence 333333333443 34333 3333333322 355666666652210 00
Q ss_pred eeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC--eEEEEECCCCceeEEEcc-CCCCeeeeeEeCCCCe-EEe-ec
Q 015371 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--SVYIYDLVSGAQVAKLDF-HNAPVRDCCWHPIYPM-LIS-SS 373 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~s-~~ 373 (408)
...+..+.......... +. .+.+++....++ .|+++++..+.....+.. -.+.|..+...++++. .++ .|
T Consensus 317 ~~~l~~~~~~~~l~~~~--~~---~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 317 WTVLIPEDEDVSLEDVS--LF---KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp EEEEE--SSSEEEEEEE--EE---TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred eeEEcCCCCceeEEEEE--EE---CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence 11222222111111111 11 133444444554 488999983444444432 3444666666666662 222 22
Q ss_pred --CCCcEEEEeeCCCCCCC
Q 015371 374 --WDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 374 --~dg~v~iw~~~~~~~~~ 390 (408)
.-++++.||+.+++...
T Consensus 392 ~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 392 FTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp TTEEEEEEEEETTTTCEEE
T ss_pred CCCCCEEEEEECCCCCEEE
Confidence 24678888888776543
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.0095 Score=49.28 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=114.9
Q ss_pred CceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc--cccceeeEEEEEeCCCCc
Q 015371 21 CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE--TKALRWTITDTSLSPDQR 98 (408)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~ 98 (408)
...++++-+.......-.+.+.+.++..-.++..|+++. . -+.+++.+++..+..... ........+.....|+|.
T Consensus 46 ~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~ 123 (307)
T COG3386 46 GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR 123 (307)
T ss_pred CCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC
Confidence 333444444433334444455556655555555566553 3 377788765544222221 122223567788889988
Q ss_pred eEEEeec-----C----cEEEEEECC-CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEE
Q 015371 99 FLVYASI-----C----AIVNIVDVG-SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYV 167 (408)
Q Consensus 99 ~l~~~~~-----d----g~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i 167 (408)
+.+.... . ..-.+|.+. .+....... . +-..-+.|+||||++.|+.+.. .+.|+.
T Consensus 124 ~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~--~------------~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 124 IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD--D------------DLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred EEEeCCCccccCccccCCcceEEEEcCCCCEEEeec--C------------cEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 7765443 0 111344443 222211111 1 0113668999999998888765 478888
Q ss_pred EECCC--Ccc-----eeeecCcCCCceEEEEecCCCCEEEEecCCC-eEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 168 YDLQA--NKC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 168 ~d~~~--~~~-----~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
|++.. +.. ...+....+..-.++.. .++++.+++..+| .|..|+. .++.+..+.-....+++++|-
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECC-----CCcEEEEEECCCCCCccceEe
Confidence 87752 111 11122334566667776 7777776555554 8999984 477777777666778888875
Q ss_pred -CCCCeEEEee
Q 015371 240 -RDGRYFISNG 249 (408)
Q Consensus 240 -~~~~~l~~~~ 249 (408)
|+.+.|.+.+
T Consensus 264 G~~~~~L~iTs 274 (307)
T COG3386 264 GPDLNTLYITS 274 (307)
T ss_pred CCCcCEEEEEe
Confidence 3445444433
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=3.9e-05 Score=41.14 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=31.6
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 68 (408)
..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45568899999999999999999999999999996
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0017 Score=55.56 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=91.6
Q ss_pred CCCceEE-EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-------EEEEEecCCeEE
Q 015371 95 PDQRFLV-YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-------ELVAAGSDNFIY 166 (408)
Q Consensus 95 ~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~ 166 (408)
.+.++|+ .+.....++-.|++.++.. ..+..+.. |.-+.+.|+.+ .-+.|-.+..|+
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIV--eEWk~~~d-------------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vf 407 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIV--EEWKFEDD-------------INMVDITPDFKFAQLTSEQTLVGLSDNSVF 407 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceee--eEeeccCC-------------cceeeccCCcchhcccccccEEeecCCceE
Confidence 3444444 3444456777788888764 33444333 55566666442 234455688899
Q ss_pred EEECCCCcc--eeeecCc----CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 167 VYDLQANKC--SLRIPAH----KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 167 i~d~~~~~~--~~~~~~~----~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
-||.+-... +...++| .....|.+-. ..-++++|+.+|.||+||. ........+.+-..+|..+..+.
T Consensus 408 riDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr----i~~~AKTAlPgLG~~I~hVdvta 481 (644)
T KOG2395|consen 408 RIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR----IGRRAKTALPGLGDAIKHVDVTA 481 (644)
T ss_pred EecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh----hhhhhhhcccccCCceeeEEeec
Confidence 999863322 1112222 2334555543 4558999999999999994 23344445777889999999999
Q ss_pred CCCeEEEeecCCeEEEEeCCC
Q 015371 241 DGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+|++|+..+ +..+.+.++.-
T Consensus 482 dGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 482 DGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred cCcEEEEec-ccEEEEEEEec
Confidence 999877655 66777777653
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.83 E-value=0.003 Score=57.39 Aligned_cols=191 Identities=14% Similarity=0.087 Sum_probs=96.3
Q ss_pred eeeEecCCccEEEeec------CceEEEEE--E-ecCceeeecccCceeEEEEcCCCCeEEEEeCC-CcEEEEEcCCCee
Q 015371 5 REVNYSGRGRFSAADS------CHVLSRYL--P-VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVDKNWK 74 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~------~~~~~~~~--~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d-g~i~iw~~~~~~~ 74 (408)
...++||||+.++.-. .+....++ + ......+.. ....+.-.|+|||+.|++.... ..+++.+-.....
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 4678899998765432 12221222 2 222233322 2248899999999988887533 2233332211111
Q ss_pred EEEe-cccc----cceeeEEEEEeCCCCceEEEeecCcEEEE---EECCCCceeeeeeeeeeeeeeeecCCCCCccceEE
Q 015371 75 IQKD-IETK----ALRWTITDTSLSPDQRFLVYASICAIVNI---VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS 146 (408)
Q Consensus 75 ~~~~-~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (408)
+... .... .....|..+.|||||..++... +|.|.+ -....+. ..+.... . .. ..-...+.+
T Consensus 432 l~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~---~--l~---~~l~~~~~~ 501 (591)
T PRK13616 432 LARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPR---E--VG---PGLGDTAVS 501 (591)
T ss_pred EEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccE---E--ee---cccCCcccc
Confidence 1110 0000 1234699999999999998776 477776 3333333 1111100 0 00 001113578
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCC-CcceeeecC--cCCCceEEEEecCCCCEEEEecCCCeEEE
Q 015371 147 VKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKV 210 (408)
Q Consensus 147 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~--~~~~v~~l~~~~~~~~~l~~~~~dg~i~i 210 (408)
+.|..++.++ ++..++...+|.+.- |.....+.. ...++..++-+ + ..++....+|.+.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~-~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS-P--STVYVTDARAVLQL 564 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecC-C--ceEEEEcCCceEEe
Confidence 9999999854 555544444444321 222222232 25567777765 3 24555566664443
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.82 E-value=0.0035 Score=42.05 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=50.8
Q ss_pred ceEEEEecCC---CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 186 VNTVCFADET---GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 186 v~~l~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
|++|++.+-+ .+-|++|+.|..||+|+ ....+..+.. .+.|+++.-... ..|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~------~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK------GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe------CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 6777776423 36899999999999999 5566666654 466777776655 568899999999999754
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00015 Score=62.95 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCce-EEEEecCCCCEEEEecCCCeEEEEeccccccCCc
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 221 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (408)
.+.-+.|+|.-..+|.+..+|.|.+..+. .+.+.+++.+...++ +++|. |+|++|++|-.||+|++.|+. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 48889999999999999999999999987 677888887777777 99999 899999999999999999974 443
Q ss_pred ccee-eecccCCeEEEEec
Q 015371 222 ANGV-LMGHLEGITFIDSR 239 (408)
Q Consensus 222 ~~~~-~~~~~~~i~~~~~~ 239 (408)
.+.. .......|.++-|.
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 3333 12234556666665
No 373
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.76 E-value=0.022 Score=49.18 Aligned_cols=151 Identities=9% Similarity=0.089 Sum_probs=88.5
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCC-----CCceEEEeecCcEEEEEECCCCc------
Q 015371 51 DGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSA------ 118 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~w~~~~~~------ 118 (408)
+...+++|+..|.++||+...+. .....+.......+|..+..-+ +...||+ -.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999985542 1111222222334777776532 2334444 446678888873221
Q ss_pred -eeeeeeeeeeeeeeeecCCCCCccceEEEEEcC----C-CCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 119 -RESLANVTIHKGLDFSADGDEDEFGIFSVKFST----D-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
...+.....|.- ......+++-| . ..++.+-+.||.+.+++-+.-.....++. ---...++|.
T Consensus 115 ~~~~L~~~yeh~l----------~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~ 183 (418)
T PF14727_consen 115 NQYQLELIYEHSL----------QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYC 183 (418)
T ss_pred cEEEEEEEEEEec----------ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEe
Confidence 111111111110 00233344333 2 35677788999999999776554444443 3334567788
Q ss_pred cCCCCEEEEecCCCeEEEEecc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
+..+.|++++.+..+.-|...
T Consensus 184 -~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 184 -PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred -ecCCEEEEecCceeEEEecHH
Confidence 677788899988899888753
No 374
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.74 E-value=0.017 Score=47.47 Aligned_cols=278 Identities=10% Similarity=0.097 Sum_probs=122.0
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCC-eeEEEecc--cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIE--TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 116 (408)
...+..|.|..+..-+|+|. .+. |+...++ +.-..... .........++.|..+ ..+++ +..+.+ +...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecCC
Confidence 45789999996666667664 453 3444333 22211111 1111224677888643 34444 445543 333333
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceeeecCcCCCceEEEEecCC
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~ 195 (408)
++.-....+.. . . ......+....++..++ ++..|.|+.=. ..++ -......-.+.+..+.-+ ++
T Consensus 90 G~tW~~v~l~~--~------l---pgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~d 155 (302)
T PF14870_consen 90 GKTWERVPLSS--K------L---PGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-SD 155 (302)
T ss_dssp TSS-EE----T--T----------SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE--TT
T ss_pred CCCcEEeecCC--C------C---CCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-CC
Confidence 32111100000 0 0 00122333333443333 34456554332 2232 222234445778888888 89
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
+.++++++.-....-||. ....-...-......|..|.|.|++.+.+.+ ..|.|++=+...
T Consensus 156 G~~vavs~~G~~~~s~~~----G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~-------------- 216 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDP----GQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD-------------- 216 (302)
T ss_dssp S-EEEEETTSSEEEEE-T----T-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--------------
T ss_pred CcEEEEECcccEEEEecC----CCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--------------
Confidence 999988877666778883 1222222333356789999999998866654 788888877221
Q ss_pred cccceeecccccceeeccCCCcceeeeeccccee-eEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc--
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR-TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-- 352 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 352 (408)
....+..+.... ..--.+..+++.+++...++|+. |. .+.....|+.-...+.
T Consensus 217 ----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 217 ----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp ----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGT
T ss_pred ----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECcccc
Confidence 011111111100 00012345567777777776654 43 3445556665555432
Q ss_pred -CCCCeeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 353 -HNAPVRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
-...++.+.|.++.+-++ -+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 244578888876655454 4578888765
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.72 E-value=0.025 Score=48.72 Aligned_cols=34 Identities=15% Similarity=-0.025 Sum_probs=28.5
Q ss_pred ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 229 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 229 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
....+.++..+|++++.++...=|.|.++|+.+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 3455788999999998888877899999999883
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.69 E-value=0.028 Score=48.41 Aligned_cols=97 Identities=23% Similarity=0.192 Sum_probs=59.2
Q ss_pred EEEeCCCCceEEEeecCcEEEE---EECCCCc-eeeeeeeeeeeeeeeecCCCCCccceEEEEEc-----------CCCC
Q 015371 90 DTSLSPDQRFLVYASICAIVNI---VDVGSSA-RESLANVTIHKGLDFSADGDEDEFGIFSVKFS-----------TDGQ 154 (408)
Q Consensus 90 ~~~~~~~~~~l~~~~~dg~i~~---w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~ 154 (408)
.++.+|+++.|+.+..+..+.+ |+..... ............+. .+....|+++.+- +|..
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~-----~~~~e~ITsi~clpl~s~~~s~~~~dw~ 80 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLD-----DEPGECITSILCLPLSSQKRSTGGPDWT 80 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeecc-----CCCCCEEEEEEEEEeecccccCCCCCcE
Confidence 4678899999999987776655 5432211 11111111111110 0001245555553 3457
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
.+++|..+|.|++|.. +|..+..-.-|..+|..+.+.
T Consensus 81 ~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 8999999999999986 676666666688999988876
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.026 Score=46.75 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=122.7
Q ss_pred EEeCCCCceEEEe-ecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEE
Q 015371 91 TSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 169 (408)
Q Consensus 91 ~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 169 (408)
..|.++...|+-+ -..+.|.-|+..+++........ .+.++..-..+..|+++. .-+.+++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~----------------~~~~~~~~d~~g~Lv~~~--~g~~~~~ 91 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG----------------GFSSGALIDAGGRLIACE--HGVRLLD 91 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC----------------CcccceeecCCCeEEEEc--cccEEEe
Confidence 3477777755443 45678888888766543222211 244444444454555553 3366777
Q ss_pred CCCCcceeeecC-----cCCCceEEEEecCCCCEEEEecC-----------CCeEEEEeccccccCCccceeeecccCCe
Q 015371 170 LQANKCSLRIPA-----HKSDVNTVCFADETGHLIFSGSD-----------DSLCKVWDRRCFISKGRANGVLMGHLEGI 233 (408)
Q Consensus 170 ~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 233 (408)
.+++..+..+.. .....+.+... +++.+.++... -|.++.+| ..+........+-..-
T Consensus 92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~-----p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 92 PDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVD-----PDGGVVRLLDDDLTIP 165 (307)
T ss_pred ccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEc-----CCCCEEEeecCcEEec
Confidence 765654333211 12345667777 66665554433 13333333 2345555555556666
Q ss_pred EEEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE
Q 015371 234 TFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 312 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
+.|+|+||++.|..+.. .+.|.-|++......... ......+.......
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~---------------------------~~~~~~~~~~~G~P--- 215 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG---------------------------RRGFVDFDEEPGLP--- 215 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC---------------------------cceEEEccCCCCCC---
Confidence 88999999987776655 477888877631000000 00001111111000
Q ss_pred EEEeeccccCCCcEEEEeeCCC-eEEEEECCCCceeEEEccCCCCeeeeeEe-CCCCeEEe
Q 015371 313 RCYFSPEYSTAQKYIYTGSSDN-SVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLIS 371 (408)
Q Consensus 313 ~~~~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s 371 (408)
-..+...+|.+.+++..+| .|.+|+.. ++.+..+..+...+++++|- |+.+.|..
T Consensus 216 ---DG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 216 ---DGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ---CceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 0113444677775555554 89999987 99999998777788899985 44454433
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.63 E-value=0.029 Score=47.23 Aligned_cols=250 Identities=12% Similarity=0.088 Sum_probs=112.1
Q ss_pred EcCCCeeEEEecccccce--eeEEEEEeCCCCceEEEeec---CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCcc
Q 015371 68 NVDKNWKIQKDIETKALR--WTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEF 142 (408)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (408)
|..++..+.++.....+. ---+.=+|.+||+.|+.++. ...+.+.|+.+++..++.......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~------------- 82 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN------------- 82 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC-------------
Confidence 344555555544433321 11222357889987777664 446788888888776554433211
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe-cCCCCEEEEecC---C-------------
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSD---D------------- 205 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~l~~~~~---d------------- 205 (408)
.....++++.+.++.......|...|+++.+....+......+-...|. +.++..++-.-. |
T Consensus 83 -~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 83 -TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp -TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred -ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 2235567888877666556789999999988666665555555556664 244444432211 1
Q ss_pred ------CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC-----eEEEEeCCCCcCcccccccccc
Q 015371 206 ------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 206 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
..|.-.|+ ..++ ...+......+..+.|+|....++.-+..| .-+||-+++..
T Consensus 162 ~~a~p~~~i~~idl----~tG~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg----------- 225 (386)
T PF14583_consen 162 YEARPHCRIFTIDL----KTGE-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG----------- 225 (386)
T ss_dssp HHC---EEEEEEET----TT---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------
T ss_pred HhhCCCceEEEEEC----CCCc-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-----------
Confidence 11222232 1333 233333456678888999665555544332 13667665421
Q ss_pred ccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-----CCCeEEEEECCCCceeEE
Q 015371 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-----SDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~ 349 (408)
.....+..+... ..+-..-|+|||..|.--+ .+..|.-+|..+++....
T Consensus 226 ----------------------~~~~~v~~~~~~----e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 226 ----------------------SNVKKVHRRMEG----ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp -------------------------EESS---TT----EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred ----------------------CcceeeecCCCC----cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 112222222211 1122225777888776422 245688888888865443
Q ss_pred EccCCCCeeeeeEeCCCCeEEeecCC
Q 015371 350 LDFHNAPVRDCCWHPIYPMLISSSWD 375 (408)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (408)
... .....+--++||++++-=+.|
T Consensus 280 ~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 280 MEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EeC--CceeeeEEcCCCCEEEecCCC
Confidence 322 234456667888877653333
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.61 E-value=0.062 Score=50.25 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=50.3
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
+|+++|.- +..|++|+..+.+.++.-..|..++..+...-.+..++.|..-+.+.+-.....+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 36666544 5579999998887777777788899999999999999999988888877666544
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.022 Score=45.10 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=103.0
Q ss_pred EEcCCCCeEEEEeCC-----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE---------
Q 015371 47 QFSNDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV--------- 112 (408)
Q Consensus 47 ~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w--------- 112 (408)
.|||||.+|...-.| |.|-|||...+ ....-....|.-....+.|.+||+.++.+. |-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc
Confidence 589999998876433 78999998854 333333444444677899999999998764 333333
Q ss_pred -----------ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe-----EEEEECCCCcce
Q 015371 113 -----------DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF-----IYVYDLQANKCS 176 (408)
Q Consensus 113 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~ 176 (408)
|..+++......++ ...+...|..++..+||...+.+-..|. -.+=....++.+
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp----------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLP----------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCc----------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 21122211111111 0123346888888888875555433221 111112233333
Q ss_pred eeec-------CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee
Q 015371 177 LRIP-------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 177 ~~~~-------~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
.-+. .....|-+++.+..++-..+++=..+...+||.. ++..+..-. -.....+.. ...-+++.+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~--l~daaGva~--~~~gf~vss 337 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAA--LPDAAGVAA--AKGGFAVSS 337 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEeccc--cccccccee--ccCceEEec
Confidence 3221 1235677888873344444444455567889954 444433211 111222333 333466667
Q ss_pred cCCeEEEEeC
Q 015371 250 KDQTTKLWDI 259 (408)
Q Consensus 250 ~d~~i~iwd~ 259 (408)
.+|.+.++.-
T Consensus 338 g~G~~~~~s~ 347 (366)
T COG3490 338 GQGRIIFYSR 347 (366)
T ss_pred CCceEEeccc
Confidence 7888888843
No 381
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.56 E-value=0.059 Score=48.84 Aligned_cols=158 Identities=8% Similarity=0.007 Sum_probs=86.7
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC---CCceEEEee------cCcEEEEEECCCCceeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQRFLVYAS------ICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------~dg~i~~w~~~~~~~~~~~ 123 (408)
..++.++.|+.+.-.|..+++.+....... +.. -..+.-+| ++ .++++. .+|.|.-+|.++++..-..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~~-~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGD-YKA-GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccc-ccc-cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 456777789999999999987776543211 100 00111122 34 444443 2688999999988765433
Q ss_pred eeeeeeeee---------eec---CCC----CC-ccceE-EEEEcCCCCEEEEEecC-----C-----------eEEEEE
Q 015371 124 NVTIHKGLD---------FSA---DGD----ED-EFGIF-SVKFSTDGQELVAAGSD-----N-----------FIYVYD 169 (408)
Q Consensus 124 ~~~~~~~~~---------~~~---~~~----~~-~~~i~-~~~~~~~~~~l~~~~~d-----g-----------~i~i~d 169 (408)
......... -.. ... .+ ...+. .+.+.++..+++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 322111000 000 000 00 01111 34666666666666421 1 688889
Q ss_pred CCCCcceeeecCcCCCceE---------EEEecCCCC---EEEEecCCCeEEEEecc
Q 015371 170 LQANKCSLRIPAHKSDVNT---------VCFADETGH---LIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~---------l~~~~~~~~---~l~~~~~dg~i~iwd~~ 214 (408)
+++|+....++.....+.. +... .+++ .++.+..+|.+.+.|.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEec-cCCcEEEEEEEeCCCceEEEEECC
Confidence 9999988777542222221 2221 3454 78899999999999965
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0024 Score=59.46 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=74.3
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
.+..+|.|+..|.+-..|+..+ +..........++|++++|+.+|..++.|-.+|.|.+||+..++.........+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4567899999999999887664 22223334445689999999999999999999999999999876644433332211
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 170 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 170 (408)
..+..+.+..++..++++...|. +|.+
T Consensus 176 -----------t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 -----------TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -----------ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 13555566666667888877776 4543
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.54 E-value=0.032 Score=45.18 Aligned_cols=155 Identities=17% Similarity=0.078 Sum_probs=86.1
Q ss_pred ceeeEecCCccEEEeec---CceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEE-cCCCeeEEEec
Q 015371 4 GREVNYSGRGRFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN-VDKNWKIQKDI 79 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~-~~~~~~~~~~~ 79 (408)
..+.+.|+||..++.-. ........+........--...+....|++++...+....+...+++. ..++.......
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV 105 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence 46788999998554322 222233333333222221234788999999988777766666677774 23332222222
Q ss_pred ccccceeeEEEEEeCCCCceEEEee---cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYAS---ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
........|..+.+||||..++... .++.|.+--+..........+..... ........+..+.|.+++.++
T Consensus 106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-----~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-----VAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-----ecccccCcceeeeecCCCEEE
Confidence 2222222799999999999988766 34677766554322110000000000 000112268999999999877
Q ss_pred EEEecCC
Q 015371 157 VAAGSDN 163 (408)
Q Consensus 157 ~~~~~dg 163 (408)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7665533
No 384
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.52 E-value=0.0022 Score=59.32 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=89.5
Q ss_pred CCCCEEEEe-cCCCeEEEEeccccccCCccceeeecccCC-eEEEEecC-----CCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 194 ETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGHLEG-ITFIDSRR-----DGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 194 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
.+.++|+.. .....|+-.|+. .++.+..+..+... |..++-.. .....+.|-.++.+..||.|......
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe----~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLE----RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cccceEeecCCCCCceEEEecC----CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344444443 345678888864 88999888887654 55544321 12234556667889999998622000
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
.. .....+.... .. . +.+-+ ...+||+|+.+|.||+||--..+.
T Consensus 567 v~----------------------------~~~k~Y~~~~---~F-s---~~aTt-~~G~iavgs~~G~IRLyd~~g~~A 610 (794)
T PF08553_consen 567 VD----------------------------SQSKQYSSKN---NF-S---CFATT-EDGYIAVGSNKGDIRLYDRLGKRA 610 (794)
T ss_pred ee----------------------------ccccccccCC---Cc-e---EEEec-CCceEEEEeCCCcEEeecccchhh
Confidence 00 0001111000 00 1 11222 245899999999999999533333
Q ss_pred eEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 347 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
...+.+-..+|..|..+.||++|++.+ +..+.+++.
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 344556688999999999999887665 457777775
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0016 Score=55.71 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=91.5
Q ss_pred EEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe-------EEEeecCCeEEEEeCCCCcCcccccc
Q 015371 198 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY-------FISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
++.++.....++-.|+ ..++.+..+.-+.. |+-+.+.|+.+. -+.|-.|..|.-||.|-...
T Consensus 348 il~~~~~~~~l~klDI----E~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------ 416 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDI----ERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------ 416 (644)
T ss_pred EeeCCCCcCcceeeec----ccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence 3445555566777775 48888888887766 777778776441 23455578899999885221
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
..+...+++...... -|+..-.....+|++|+.+|.|++||--.......+
T Consensus 417 --------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAl 467 (644)
T KOG2395|consen 417 --------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTAL 467 (644)
T ss_pred --------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcc
Confidence 011222222211100 011111113568999999999999997333344456
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
.+-..+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 77888999999999999877655 5567666654
No 386
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.034 Score=44.32 Aligned_cols=206 Identities=15% Similarity=0.128 Sum_probs=114.4
Q ss_pred eeeeccc-CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCC--eeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 34 WKVDGMN-SRVYTSQFSNDGSFFVAASQESNIKVYNVDKN--WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 34 ~~l~~h~-~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
..+.||- ..|..+....+-.++..|-.=-..-+|+.... ......... ..-+..+.++ +++...+..+.-++
T Consensus 35 ~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~---~~l~~Dv~vs--e~yvyvad~ssGL~ 109 (370)
T COG5276 35 YAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINA---RDLFADVRVS--EEYVYVADWSSGLR 109 (370)
T ss_pred eEEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEeh---hhhhheeEec--ccEEEEEcCCCceE
Confidence 4566776 55666666544333333321112334443311 011111111 1246667776 45666666777899
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc---ceeeecCcCCCce
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSDVN 187 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~ 187 (408)
+.|+.+.....+...-...+ --.++ .-.|++..++..+.-..+.|+.+.+ ...++........
T Consensus 110 IvDIS~P~sP~~~~~lnt~g------------yaygv--~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~ 175 (370)
T COG5276 110 IVDISTPDSPTLIGFLNTDG------------YAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH 175 (370)
T ss_pred EEeccCCCCcceeccccCCc------------eEEEE--EecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence 99998876544333222111 12333 3358888888866667788886543 2333444445556
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccce-eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
.++.+ +++-..+..|+-+.+-|+.+ ...+.. ........+.++..+++-.+++... .-+.+-|....+..+
T Consensus 176 ~v~IS---Gn~AYvA~~d~GL~ivDVSn---p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~ 247 (370)
T COG5276 176 DVAIS---GNYAYVAWRDGGLTIVDVSN---PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPT 247 (370)
T ss_pred eEEEe---cCeEEEEEeCCCeEEEEccC---CCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCce
Confidence 77777 77888888999999999852 222221 1112233788888887766665543 236677766654433
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.45 E-value=0.054 Score=49.49 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=99.8
Q ss_pred cCCCCeEEEEeCCC------cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-c-----EEEEEECCC
Q 015371 49 SNDGSFFVAASQES------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-A-----IVNIVDVGS 116 (408)
Q Consensus 49 s~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~~w~~~~ 116 (408)
+..+.+++.||.++ .+..+|..++.-.. ..... ....-.+++.. ++...++|+.+ | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 34466777777763 57788887762221 11111 11123334443 45777888888 3 577788777
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC-----eEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
.+-........... .. .++ .-+|...++|+.|| .+-.||..+.+....-. ..........
T Consensus 359 ~~W~~~a~M~~~R~------------~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv 423 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRS------------DF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGV 423 (571)
T ss_pred CceeccCCccCccc------------cc-eeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEE
Confidence 66433222222211 11 111 12677888888876 47778877665332221 1112333333
Q ss_pred ecCCCCEEEEecCCC------eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe-----EEEEeCC
Q 015371 192 ADETGHLIFSGSDDS------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-----TKLWDIR 260 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~iwd~~ 260 (408)
..-++.+.++|+.++ ++..||.. ......+........... ++.. ++.+.+.||.|+. +..||..
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPE--TNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCC--CCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCC
Confidence 324688888888665 46677754 122222222222222222 2222 5777888887763 5667766
Q ss_pred C
Q 015371 261 K 261 (408)
Q Consensus 261 ~ 261 (408)
+
T Consensus 500 ~ 500 (571)
T KOG4441|consen 500 T 500 (571)
T ss_pred C
Confidence 5
No 388
>PHA02713 hypothetical protein; Provisional
Probab=97.45 E-value=0.029 Score=51.24 Aligned_cols=32 Identities=3% Similarity=-0.048 Sum_probs=21.6
Q ss_pred CCcEEEEeeCCC--eEEEEECCCCceeEEEccCC
Q 015371 323 AQKYIYTGSSDN--SVYIYDLVSGAQVAKLDFHN 354 (408)
Q Consensus 323 ~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~ 354 (408)
++++.++|+.+| .+..||..+.+-......|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 478888998888 67778877665443333343
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.42 E-value=0.00065 Score=37.83 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=28.2
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNV 69 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~ 69 (408)
...|.+++|+|..++||.+..+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 467999999999999999999999999998
No 390
>PHA02713 hypothetical protein; Provisional
Probab=97.39 E-value=0.012 Score=53.71 Aligned_cols=189 Identities=10% Similarity=0.069 Sum_probs=95.0
Q ss_pred CCCeEEEEeCC------CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc-----EEEEEECCCCce
Q 015371 51 DGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVGSSAR 119 (408)
Q Consensus 51 ~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~w~~~~~~~ 119 (408)
++...+.||.+ ..+..||..++.- ...............+ .-+++..+.|+.++ .+..||..+.+-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56777777753 3477788776532 1111111111112222 22677777887653 477888877654
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-----------------------CeEEEEECCCCcce
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----------------------NFIYVYDLQANKCS 176 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------g~i~i~d~~~~~~~ 176 (408)
......+.... ....+. -+++..+.|+.+ ..+..||.++.+-.
T Consensus 380 ~~~~~mp~~r~------------~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 380 KMLPDMPIALS------------SYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred EECCCCCcccc------------cccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 33222221111 111122 257767777654 24778888776433
Q ss_pred eeecCcCCCc-eEEEEecCCCCEEEEecCCC------eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee
Q 015371 177 LRIPAHKSDV-NTVCFADETGHLIFSGSDDS------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 177 ~~~~~~~~~v-~~l~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
..-.-..... .+++. -++.+.+.|+.++ .+..||.... .....+..+.........+.+ ++++.++|+
T Consensus 446 ~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 446 TLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLHC 520 (557)
T ss_pred ecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEee
Confidence 2111111111 22333 3567777776542 4677886410 122333333332222233333 678888999
Q ss_pred cCC--eEEEEeCCC
Q 015371 250 KDQ--TTKLWDIRK 261 (408)
Q Consensus 250 ~d~--~i~iwd~~~ 261 (408)
.++ .+..||..+
T Consensus 521 ~~~~~~~e~yd~~~ 534 (557)
T PHA02713 521 YESYMLQDTFNVYT 534 (557)
T ss_pred ecceeehhhcCccc
Confidence 888 567777766
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00034 Score=52.99 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEE-EEEcCCCCEEEEEecCCeEEEEECCCCc
Q 015371 96 DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANK 174 (408)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 174 (408)
-+..+++|+.+|.|.+|................. .|.+ +.-..++.+..+++.+|.|+.|++.-++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-------------~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-------------SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccc-------------cceeccccccccceeEEeccCCceeeeccccCc
Confidence 3567889999999999988633221111111111 1222 2223356688889999999999999888
Q ss_pred ceeeecCcC-CCceEEEEecCCCCEEEEe--cCCCeEEEEecc
Q 015371 175 CSLRIPAHK-SDVNTVCFADETGHLIFSG--SDDSLCKVWDRR 214 (408)
Q Consensus 175 ~~~~~~~~~-~~v~~l~~~~~~~~~l~~~--~~dg~i~iwd~~ 214 (408)
.+.....|. .++..+..+ ..+.++..+ |.|..++.|++.
T Consensus 136 ~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 136 VLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchh
Confidence 777777777 566666665 566667666 777778888764
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.30 E-value=0.08 Score=48.43 Aligned_cols=146 Identities=19% Similarity=0.234 Sum_probs=78.3
Q ss_pred CCCceEEEeecCc------EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC------
Q 015371 95 PDQRFLVYASICA------IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------ 162 (408)
Q Consensus 95 ~~~~~l~~~~~dg------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------ 162 (408)
..+..+++|+.++ .+..+|..++............ .-.+++.. ++...++|+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-------------~~~~~~~~-~~~lYv~GG~~~~~~~l 348 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-------------CRVGVAVL-NGKLYVVGGYDSGSDRL 348 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-------------ccccEEEE-CCEEEEEccccCCCccc
Confidence 3455667777663 5778888777544443333221 12333443 45677888887
Q ss_pred CeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCCCe-----EEEEeccccccCCccceeeecccCCeEE
Q 015371 163 NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSL-----CKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
..+..||..+++-... +...... ..++. -++.+.++|+.||. +..||.+ ......+............
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~--~~~W~~va~m~~~r~~~gv 423 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSD-FGVAV--LDGKLYAVGGFDGEKSLNSVECYDPV--TNKWTPVAPMLTRRSGHGV 423 (571)
T ss_pred ceEEEecCCCCceeccCCccCcccc-ceeEE--ECCEEEEEeccccccccccEEEecCC--CCcccccCCCCcceeeeEE
Confidence 3678888877764331 1111111 12222 46888999999874 6677754 1122222222211112222
Q ss_pred EEecCCCCeEEEeecCC------eEEEEeCCC
Q 015371 236 IDSRRDGRYFISNGKDQ------TTKLWDIRK 261 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d~------~i~iwd~~~ 261 (408)
. .-+|.+.++||.++ .+..||..+
T Consensus 424 ~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 424 A--VLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E--EECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 2 22577778887654 356677665
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.024 Score=53.26 Aligned_cols=101 Identities=18% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCc-ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 152 DGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
.+..++.|+..|.+...|+...- +...-..-.++|++++|+ .++.+++.|-.+|.|.+||+. .++..+.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence 45678899989999998886531 112223346899999999 999999999999999999964 677788887777
Q ss_pred CCeEEEE---ecCCCCeEEEeecCCeEEEEeC
Q 015371 231 EGITFID---SRRDGRYFISNGKDQTTKLWDI 259 (408)
Q Consensus 231 ~~i~~~~---~~~~~~~l~~~~~d~~i~iwd~ 259 (408)
.+.+++- +..++..++++...|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6665554 4445567778777775 5543
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.27 E-value=0.071 Score=43.16 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=89.0
Q ss_pred ceeEEEEcCCCCeEEEEe---CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE-CCCC
Q 015371 42 RVYTSQFSNDGSFFVAAS---QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD-VGSS 117 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~-~~~~ 117 (408)
.+.+.++|+|++.+|... ....++++.. +........ .. .+....|++++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-g~---~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-GG---SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-CC---ccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999877655 2334555543 333333221 11 578889999988777777666667664 2222
Q ss_pred ceeee-eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECC---CC------cceeeecCcCC
Q 015371 118 ARESL-ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQ---AN------KCSLRIPAHKS 184 (408)
Q Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~---~~------~~~~~~~~~~~ 184 (408)
..... ....... ..|..++++|||.+++.... ++.|.+--+. .+ ...........
T Consensus 99 ~~~~~~v~~~~~~------------~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 99 TGEPVEVDWPGLR------------GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred cceeEEecccccC------------CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 22111 1111110 15999999999999887763 5777777553 22 11111223356
Q ss_pred CceEEEEecCCCCEEEEecCCCe
Q 015371 185 DVNTVCFADETGHLIFSGSDDSL 207 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~ 207 (408)
.++.+.|. ++..+++.+...+.
T Consensus 167 ~v~~v~W~-~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 167 DVTDVAWS-DDSTLVVLGRSAGG 188 (253)
T ss_pred cceeeeec-CCCEEEEEeCCCCC
Confidence 88999999 66766666655443
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.067 Score=42.84 Aligned_cols=162 Identities=7% Similarity=0.096 Sum_probs=98.1
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
...+.++.|+|+.+.|++......-.++=...++......+..... ...+.+..+|++.++--.++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-------------pE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-------------PETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-------------hhHeEEecCCEEEEEehhcce
Confidence 3359999999999999888777666565555555544433333322 556778878877777667888
Q ss_pred EEEEECCCCcceeee----------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc-----
Q 015371 165 IYVYDLQANKCSLRI----------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----- 229 (408)
Q Consensus 165 i~i~d~~~~~~~~~~----------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----- 229 (408)
++++.+........+ .........++|. +....|+.+-+..-+.||...... ..-.......+
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~~-~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQSP-SSLSVHASLDPTADRD 229 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecCC-cccccccccCcccccc
Confidence 888877655322211 1125667899999 566666666666677777654111 11111111111
Q ss_pred --cCCeEEEEecCCC-CeEEEeecCCeEEEEeCCC
Q 015371 230 --LEGITFIDSRRDG-RYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 230 --~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 261 (408)
-..+.++.|++.. .+++-+.+++.+.-.|...
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 2345677787644 4555555666666676654
No 396
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.26 E-value=0.081 Score=43.70 Aligned_cols=192 Identities=10% Similarity=0.131 Sum_probs=104.8
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec-----------ccccceeeEEEEE--eCCCCceEEEeecC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI-----------ETKALRWTITDTS--LSPDQRFLVYASIC 106 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~~v~~~~--~~~~~~~l~~~~~d 106 (408)
...|..+...|+-+.|++-+ |+.++++++..-....... ........+...+ -...+...++....
T Consensus 35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK 113 (275)
T ss_pred cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence 34499999999888777765 5999999987643332110 0011111344444 11233334444445
Q ss_pred cEEEEEECCCCc--e-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCc-
Q 015371 107 AIVNIVDVGSSA--R-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH- 182 (408)
Q Consensus 107 g~i~~w~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 182 (408)
..|.+|...... . .....+.... .+.+++|. ++.++.|.. ....+.|+.++.....+...
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~lp~-------------~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~ 177 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEISLPD-------------PPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSD 177 (275)
T ss_pred CEEEEEEEECCcccccceeEEEEcCC-------------CcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccC
Confidence 689888886632 1 2222232222 58899998 556777764 44889999877654433211
Q ss_pred -----------CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce--eeecccCCeEEEEecCCCCeEEEee
Q 015371 183 -----------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 183 -----------~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
..++..+.. +++.+|++- |..-.+.|. .++..+ .+. -......+.+. ..+|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~e~Ll~~--~~~g~fv~~-----~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~ 245 (275)
T PF00780_consen 178 SSSSFKSRNSSSKPLGIFQL--SDNEFLLCY--DNIGVFVNK-----NGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFS 245 (275)
T ss_pred CcchhhhcccCCCceEEEEe--CCceEEEEe--cceEEEEcC-----CCCcCcccEEE-cCCchhEEEEE--CCEEEEEC
Confidence 123333333 345555543 333334443 232222 222 12345566664 45777766
Q ss_pred cCCeEEEEeCCC
Q 015371 250 KDQTTKLWDIRK 261 (408)
Q Consensus 250 ~d~~i~iwd~~~ 261 (408)
. +.|.+|++.+
T Consensus 246 ~-~~iEV~~~~~ 256 (275)
T PF00780_consen 246 S-NSIEVRSLET 256 (275)
T ss_pred C-CEEEEEECcC
Confidence 5 5599999998
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.17 E-value=0.048 Score=41.96 Aligned_cols=153 Identities=13% Similarity=0.204 Sum_probs=91.1
Q ss_pred cCceeEEEEcCCCCeEEEEeC---------CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEE-eecCcEE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQ---------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY-ASICAIV 109 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i 109 (408)
+.+.+.-..+|+|++.+-.-. .|.++.|-.... +......-. --+.++|+.+.+.+.. -+.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v~---IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCVG---ISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeeehhcc---CCccccccccCcEEEEEccCceEE
Confidence 445566677899998442211 255666654332 221111111 2356889887776654 4556677
Q ss_pred EEEE--CCCCceeeeeeee-eeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc
Q 015371 110 NIVD--VGSSARESLANVT-IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 186 (408)
Q Consensus 110 ~~w~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 186 (408)
.-|| ..++.......+. ..+...+... ..-.++...+|++.++.-..++|...|..+|+.+..++-....|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESL------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCC------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 7787 5555432211111 1111111110 12234456688888888888999999999999999998889999
Q ss_pred eEEEEecCCCCEEEEec
Q 015371 187 NTVCFADETGHLIFSGS 203 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~ 203 (408)
+|++|-.++-.++++..
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 99999855555555543
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.12 E-value=0.14 Score=43.53 Aligned_cols=246 Identities=13% Similarity=0.106 Sum_probs=114.8
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecCc-ee-------eecccCceeEEEEcCC----CCeEEEEeCC--------C
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-WK-------VDGMNSRVYTSQFSND----GSFFVAASQE--------S 62 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~-------l~~h~~~v~~~~~s~~----~~~l~t~~~d--------g 62 (408)
+.+.|+|.|||+++++.....++.+...... .. ..........++++|+ +.+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 4689999999999988876666555512221 11 2234566899999994 4433333321 2
Q ss_pred cEEEEEcCCC-------eeEEEeccc-ccceeeEEEEEeCCCCceEEEeecCc-------------EEEEEECCCCceee
Q 015371 63 NIKVYNVDKN-------WKIQKDIET-KALRWTITDTSLSPDQRFLVYASICA-------------IVNIVDVGSSARES 121 (408)
Q Consensus 63 ~i~iw~~~~~-------~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg-------------~i~~w~~~~~~~~~ 121 (408)
.|.-|....+ +.+...... ......-..|.|.|||.+.++.+..+ .|.-.+.... ...
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~-~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS-IPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS-B-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc-CCC
Confidence 3554555443 111111111 11122466799999997766655332 2222222111 000
Q ss_pred eeeeee---eeeeeeecCCCCCccceEEEEEcCC-CCEEEEEec--CCeEEEEECCCCc---------------------
Q 015371 122 LANVTI---HKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGS--DNFIYVYDLQANK--------------------- 174 (408)
Q Consensus 122 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~--dg~i~i~d~~~~~--------------------- 174 (408)
...+.. .....+. .++. ....++|+|. |. |.++.. ++.=.|.-+..+.
T Consensus 162 dnP~~~~~~~~~~i~A---~GlR-N~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYA---YGLR-NPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TSTTTTSTTSTTTEEE---E--S-EEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCccccCCCceEEEEE---eCCC-ccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 000000 0000000 0001 2567899998 54 444432 2222222222211
Q ss_pred --------ceeeecCcCCCceEEEEecC------CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 175 --------CSLRIPAHKSDVNTVCFADE------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 175 --------~~~~~~~~~~~v~~l~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
+...+. +...+..+.|.+. .+.+|++.-..+.|....+............+......+..+++.|
T Consensus 237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 111222 2345666777621 3456666666677777776421111111122233445799999999
Q ss_pred CCCeEEEeecCCeEE
Q 015371 241 DGRYFISNGKDQTTK 255 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~ 255 (408)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888888788764
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.1 Score=41.64 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=67.8
Q ss_pred EEEEEeCCCC-ceEEEeecCcE-EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec----
Q 015371 88 ITDTSLSPDQ-RFLVYASICAI-VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---- 161 (408)
Q Consensus 88 v~~~~~~~~~-~~l~~~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 161 (408)
-..|+|+|.. ..++.+-.-|+ ..++|..+.+...........- -.-.=.|+|||.+|++.-.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH------------fyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH------------FYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce------------eecccccCCCCcEEEeecCCCCC
Confidence 3457888854 45666666564 5578887765433222111110 1223469999998887644
Q ss_pred -CCeEEEEECCCC-cceeeecCcCCCceEEEEecCCCCEEEEec
Q 015371 162 -DNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 162 -dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
.|.|-|||.+.+ +.+..+..|.-....+.+. +|+..++.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm-~DGrtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM-ADGRTLVVAN 180 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEe-cCCcEEEEeC
Confidence 378999998754 4456678888888899999 8999888764
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.003 Score=35.20 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=27.8
Q ss_pred eeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 86 WTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
..|.+++|+|...+||.++.+|.|.++.+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 369999999999999999999999999984
No 401
>PHA03098 kelch-like protein; Provisional
Probab=96.94 E-value=0.15 Score=46.83 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=88.0
Q ss_pred CCCCeEEEEeCCC------cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-----cEEEEEECCCCc
Q 015371 50 NDGSFFVAASQES------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSA 118 (408)
Q Consensus 50 ~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 118 (408)
.++..++.||.++ .+..||..++.- ...............+.+ +++..+.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556677776542 467788766532 222111111111222222 57777777754 346677776654
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC------CeEEEEECCCCcceee--ecCcCCCceEEE
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLR--IPAHKSDVNTVC 190 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~l~ 190 (408)
-......+.... .. +++ .-+++..+.|+.+ ..+..||..+++-... ++.... -.+++
T Consensus 370 W~~~~~lp~~r~------------~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~ 434 (534)
T PHA03098 370 WREEPPLIFPRY------------NP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAI 434 (534)
T ss_pred eeeCCCcCcCCc------------cc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEE
Confidence 332222111100 11 112 1256666666632 4688899877643321 111111 12233
Q ss_pred EecCCCCEEEEecCCC--------eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-----CeEEEE
Q 015371 191 FADETGHLIFSGSDDS--------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLW 257 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iw 257 (408)
. .++.+++.|+.+. .+.+||... .....+............+.+ +++.++.|+.+ +.+.+|
T Consensus 435 ~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 508 (534)
T PHA03098 435 Y--HDGKIYVIGGISYIDNIKVYNIVESYNPVT--NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVY 508 (534)
T ss_pred E--ECCEEEEECCccCCCCCcccceEEEecCCC--CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEE
Confidence 3 3466777776432 377888641 111111111111111112222 56777777654 457778
Q ss_pred eCCC
Q 015371 258 DIRK 261 (408)
Q Consensus 258 d~~~ 261 (408)
|..+
T Consensus 509 d~~~ 512 (534)
T PHA03098 509 DDKT 512 (534)
T ss_pred eCCC
Confidence 7765
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.85 E-value=0.077 Score=46.81 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=73.9
Q ss_pred eeecccCceeEEEEcCCC-----CeEEEEeCCCcEEEEEcCCC-----eeEE-Eeccccc-ceeeEEEEEeCCCCceEEE
Q 015371 35 KVDGMNSRVYTSQFSNDG-----SFFVAASQESNIKVYNVDKN-----WKIQ-KDIETKA-LRWTITDTSLSPDQRFLVY 102 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-----~~l~t~~~dg~i~iw~~~~~-----~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~ 102 (408)
..-|.-+.|..+.|+|-+ .+||+- ....|.||.+... +.+. +.....+ ..--...+.|+|....|++
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~V 129 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTV 129 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEE
Confidence 344666789999999953 455554 4568999998632 1111 1111000 0001234679999998887
Q ss_pred eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 015371 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA 172 (408)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 172 (408)
-.....-.+.++..........++.. +-|.|.+|.+||++|+++-. .=.-++||-..
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~~~-------------G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIKTS-------------GLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EecCceeEeeeeeeCCceEEEeccCC-------------ceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 76655545666654433323333222 14999999999999887743 33567888543
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.81 E-value=0.3 Score=42.44 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=92.2
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-----CCCeEEEeecCCeEEEEeCCCCcCcccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-----DGRYFISNGKDQTTKLWDIRKMSSNTTD 268 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 268 (408)
.+.+.|++|+..|.++||+..........+..-..-..+|..+..-+ +...|++ =.-..+.+|.+.........
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34579999999999999997422111111222223456888877532 2234444 34567788877432111000
Q ss_pred ccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC-CcEEEEeeCCCeEEEEECCCCcee
Q 015371 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
...-.+.....|.-.......+..+--... ..+|++-+.||.+.+|+-+.....
T Consensus 114 -------------------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~ 168 (418)
T PF14727_consen 114 -------------------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS 168 (418)
T ss_pred -------------------------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE
Confidence 001122233333332332233322221222 468889999999999996554433
Q ss_pred EEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 348 AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
..+.. ---..-++|.+....+++++.+..+.-|+...
T Consensus 169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 33332 12223367888888899999999999988754
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.79 E-value=0.29 Score=42.05 Aligned_cols=202 Identities=13% Similarity=0.019 Sum_probs=90.3
Q ss_pred CCCeEEEEe-CCCcEEEEEcCCC---eeEEEeccc-----ccceeeEEEEEeCCCCceEEEeec------CcEEEEEECC
Q 015371 51 DGSFFVAAS-QESNIKVYNVDKN---WKIQKDIET-----KALRWTITDTSLSPDQRFLVYASI------CAIVNIVDVG 115 (408)
Q Consensus 51 ~~~~l~t~~-~dg~i~iw~~~~~---~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~w~~~ 115 (408)
+.++|+..+ ..+.|+|.|+.+. -.+.+.+.. ...-.....+..-|+|+.++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 467777776 6788999998853 122332222 111123444555678988887532 2457777777
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--------------------CCeEEEEECCCCcc
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--------------------DNFIYVYDLQANKC 175 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~ 175 (408)
+.+.......... ...--..+-|.|..+.+++... ...+.+||+.+.+.
T Consensus 166 tf~v~g~We~~~~-----------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-----------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp T--EEEE--SB-T-----------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred cccccceeccCCC-----------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 6554332221111 1113456777787777776532 45799999999999
Q ss_pred eeeecCcC--CCceEEEEec-CCCCE-EEEecCCCeEEEEec-cccccCCccceee-----------------ecccCCe
Q 015371 176 SLRIPAHK--SDVNTVCFAD-ETGHL-IFSGSDDSLCKVWDR-RCFISKGRANGVL-----------------MGHLEGI 233 (408)
Q Consensus 176 ~~~~~~~~--~~v~~l~~~~-~~~~~-l~~~~~dg~i~iwd~-~~~~~~~~~~~~~-----------------~~~~~~i 233 (408)
++++.--. .....+.|.. |+... ++.+.-..+|..|-- ....-..+.+..+ ..-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 98885432 2355677651 22333 333334445554432 1000000111111 1113457
Q ss_pred EEEEecCCCCeEEEeec-CCeEEEEeCCCCc
Q 015371 234 TFIDSRRDGRYFISNGK-DQTTKLWDIRKMS 263 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~ 263 (408)
+.|..|.|.++|..+.- +|.|+.||+....
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 89999999998876654 8999999998844
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.76 E-value=0.29 Score=41.61 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeE---E-EccCCCCeeeeeEeCCCCeEEeecCCCcEE
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVA---K-LDFHNAPVRDCCWHPIYPMLISSSWDCNIV 379 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~---~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~ 379 (408)
.|.++++.-..+.|....+.....+. . +.....++.++++.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 46777777777888888887553322 2 233455899999999999888888888875
No 406
>PRK10115 protease 2; Provisional
Probab=96.68 E-value=0.59 Score=44.18 Aligned_cols=197 Identities=10% Similarity=0.062 Sum_probs=99.5
Q ss_pred CceeEEEEcCCCCeEEEEeC-----CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC------cEE
Q 015371 41 SRVYTSQFSNDGSFFVAASQ-----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------AIV 109 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i 109 (408)
-.+..+.+||||++||.+.. ...|++-|+.++..+..... . .-..++|.+|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~--~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD--N---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc--C---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34777899999999887632 24588888887743222111 1 11458999999877766542 357
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE-EEEEcCCCCEEEEEec---CCeEEEEECC--CCcceeeecCcC
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGS---DNFIYVYDLQ--ANKCSLRIPAHK 183 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~ 183 (408)
..+++.++.......+..... ... .+..+.++++++..+. ++.+.+++.. +++....+....
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~------------~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDD------------TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRK 269 (686)
T ss_pred EEEECCCChhHCeEEEeeCCC------------CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCC
Confidence 778887763221111111111 122 3333447777665544 4578888843 343222222222
Q ss_pred CCceEEEEecCCCCEEEEecCC-CeEEEEeccccccCCccceeeecc-c-CCeEEEEecCCCCeEEEeecCCeEEEEeC
Q 015371 184 SDVNTVCFADETGHLIFSGSDD-SLCKVWDRRCFISKGRANGVLMGH-L-EGITFIDSRRDGRYFISNGKDQTTKLWDI 259 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 259 (408)
.....+. . ..+.+++....+ ...++..+. .........+..+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 270 ~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 270 DHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTR--VRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CCEEEEE-e-CCCEEEEEEcCCCCCceEEEec--CCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 2222222 2 233333333221 233343322 1111222334444 2 367777777 3345556666776555544
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.051 Score=51.60 Aligned_cols=152 Identities=12% Similarity=0.011 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCceEEEee--cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEecCC
Q 015371 87 TITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDN 163 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg 163 (408)
+|..+...+|+...++.. .+-.|..||+..-........ ..+.......+...-..++.|+|.-. ..++...|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~---~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT---VPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc---cccccccchhccccccccccccCCccchhhhhcccc
Confidence 466666777876655443 344788999876443221111 11111111122223466788888432 355566788
Q ss_pred eEEEEECCCCcce-eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec----ccCCeEEEEe
Q 015371 164 FIYVYDLQANKCS-LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDS 238 (408)
Q Consensus 164 ~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~ 238 (408)
.|.+..+...... ..+. .....++++|+ +.+..++.|-..|++.-|... .+....+.+ ....|.++.|
T Consensus 179 sl~V~~~~~~~~~v~s~p-~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP-VTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred chhhhhhhhhhhhhcccC-cccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCcceeEEEE
Confidence 8888876543222 2222 45678999999 899999999999999998742 222222221 1467899999
Q ss_pred cCCCCeEEEe
Q 015371 239 RRDGRYFISN 248 (408)
Q Consensus 239 ~~~~~~l~~~ 248 (408)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8766666553
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.54 E-value=0.36 Score=39.95 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC-Cc
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-GR 221 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 221 (408)
.+..+.-++||++++++.......-||--...-...-..-...|..|.|. +++.+.+.+ ..|.|++=+....... .+
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWMLA-RGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence 58888889999988888765555677754322222223346789999999 777766654 7888887762100001 11
Q ss_pred cceeeecccCCeEEEEecCCCCeEEEeecC
Q 015371 222 ANGVLMGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 222 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
.........-.+..+++.+++...++|+..
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 111111223347889999988877766644
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.49 E-value=0.48 Score=43.53 Aligned_cols=103 Identities=9% Similarity=0.022 Sum_probs=50.8
Q ss_pred CCceEEEeecCc------EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-----Ce
Q 015371 96 DQRFLVYASICA------IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NF 164 (408)
Q Consensus 96 ~~~~l~~~~~dg------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~ 164 (408)
++..++.|+.++ .+..||..+.+-........... ....+. -+++..+.|+.+ ..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~------------~~~~~~--~~~~lyv~GG~~~~~~~~~ 359 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK------------NPGVTV--FNNRIYVIGGIYNSISLNT 359 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc------------cceEEE--ECCEEEEEeCCCCCEecce
Confidence 556666666432 46677776665432222111110 122222 256677777754 35
Q ss_pred EEEEECCCCcceeeecC-cCCCceEEEEecCCCCEEEEecCC------CeEEEEecc
Q 015371 165 IYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDD------SLCKVWDRR 214 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~d------g~i~iwd~~ 214 (408)
+..||..+++-...-.. +...-.+++. .++.+.+.|+.+ ..+..||+.
T Consensus 360 v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 360 VESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred EEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCC
Confidence 77888876643221110 1111122222 356777777632 357788864
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.49 E-value=0.82 Score=43.47 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=111.2
Q ss_pred CCEEEEEecCCeEEEEECCCCcceeeecCcCC--------CceEEEEec---------------CCCCEEEEecCCCeEE
Q 015371 153 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKS--------DVNTVCFAD---------------ETGHLIFSGSDDSLCK 209 (408)
Q Consensus 153 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~v~~l~~~~---------------~~~~~l~~~~~dg~i~ 209 (408)
+..++.++.++.|.-.|..+|+.+.++..... ....+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677888889999999999998877743221 122333331 1234788888999998
Q ss_pred EEeccccccCCccceeeecccCCe-------------EEEEecC--CCCeEEEeec----------CCeEEEEeCCCCcC
Q 015371 210 VWDRRCFISKGRANGVLMGHLEGI-------------TFIDSRR--DGRYFISNGK----------DQTTKLWDIRKMSS 264 (408)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~ 264 (408)
-.|.+ +++....+.. .+.+ ..+.-.| .+..+++++. +|.|+-+|.++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 88854 5665544321 1111 0111112 1334555542 68899999999765
Q ss_pred ccccccccccccccceeecccccceeeccCCCc--ceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ--SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
............. .. ............ ....+.........-.....+.+-...+........+.|.-.|.+
T Consensus 349 ~W~~~~g~p~~~~----~~--~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 349 VWAWDPGNPDPTA----PP--APGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred eeEEecCCCCccc----CC--CCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 5443211000000 00 000000000000 001111111000000000001110000000011124678889999
Q ss_pred CCceeEEEccCCCCeee---------eeEeC-CCC---eEEeecCCCcEEEEeeCCCCCC
Q 015371 343 SGAQVAKLDFHNAPVRD---------CCWHP-IYP---MLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 343 ~~~~~~~~~~~~~~v~~---------~~~~~-~~~---~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
+|+..-.++.....+.+ +.+.. +|+ .++.++.+|.+++.|-.+++..
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 99988777642211111 22322 553 7889999999999999887653
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.46 E-value=0.22 Score=45.38 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=71.2
Q ss_pred EEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc--CCCCEEEEEecCCeE
Q 015371 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGSDNFI 165 (408)
Q Consensus 88 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i 165 (408)
+.-+.-+.-++.-++-+....+.|||...+..+....+... ..|.++.|. |+++.+++.+..+.|
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~-------------~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSED-------------DPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCC-------------CceeeceeeecCCCCEEEEEEcCcEE
Confidence 33344444455444545556899999988875544444222 259999986 588888888899999
Q ss_pred EEEECC-----C----Ccceeee--cCcC-CCceEEEEecCCCCEEEEecCCCeEEEEec
Q 015371 166 YVYDLQ-----A----NKCSLRI--PAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDR 213 (408)
Q Consensus 166 ~i~d~~-----~----~~~~~~~--~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~ 213 (408)
.+|.-. . ..++..+ ..++ .+|.+..|. ++|.+++.++ ..+.|+|-
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEEEEeC--CEEEEECC
Confidence 998542 1 1222222 3344 689999999 7776665443 46888873
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.46 E-value=0.29 Score=37.93 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=39.1
Q ss_pred cCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeC
Q 015371 321 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 364 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (408)
..+|++.++.-..|+|...|..+|+.+.++.-....|++++|--
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44688888888899999999999999999998899999999963
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.30 E-value=0.018 Score=30.99 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.9
Q ss_pred CCceEEEEecCCC--CEEEEecCCCeEEEEecc
Q 015371 184 SDVNTVCFADETG--HLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 184 ~~v~~l~~~~~~~--~~l~~~~~dg~i~iwd~~ 214 (408)
+.+.++.|+|..+ ++|+.+-..|.|.++|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999996566 799999999999999987
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.30 E-value=1.1 Score=42.77 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=69.7
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEeccccccee-----eEEEEEeC----------------CCCceEEEeecCcEEE
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW-----TITDTSLS----------------PDQRFLVYASICAIVN 110 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~----------------~~~~~l~~~~~dg~i~ 110 (408)
+..|..++.++.|.-.|..+++.+.+......... ....+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777788888889888877766533221110 01122221 1344788888899999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEEEec----------CCeEEEEECCCCcceee
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGS----------DNFIYVYDLQANKCSLR 178 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~ 178 (408)
-.|.++++......... .+.+..........-..+.-.| .+..+++|+. +|.|+-+|.++|+.+..
T Consensus 274 ALDA~TGk~~W~fg~~G--~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG--TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecCCC--ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999887643322111 0101000000000000111112 1335666643 68899999999998887
Q ss_pred ec
Q 015371 179 IP 180 (408)
Q Consensus 179 ~~ 180 (408)
+.
T Consensus 352 ~~ 353 (764)
T TIGR03074 352 WD 353 (764)
T ss_pred Ee
Confidence 74
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.29 E-value=1.1 Score=42.66 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=84.8
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC--C----ceEEEeecCcEEEEEEC
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--Q----RFLVYASICAIVNIVDV 114 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~----~~l~~~~~dg~i~~w~~ 114 (408)
+.++....+.+...++.++.++.+...++.... + ........+..|.|+.++|- + +++++|..+..+.+.-.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-L-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc-e-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 445555555555667777666666666665543 1 11223334457999999974 2 36788877666554433
Q ss_pred CC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC--CCCcceeee--cCcCCCceEE
Q 015371 115 GS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL--QANKCSLRI--PAHKSDVNTV 189 (408)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~--~~~~~~v~~l 189 (408)
.. ........... +--+..|.-..+-.|..+|.++..||.+.-+-+ .++.....- .-...|+.--
T Consensus 566 ~pd~~~~~~~~l~~----------~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr 635 (1096)
T KOG1897|consen 566 LPDLILITHEQLSG----------EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLR 635 (1096)
T ss_pred CCCcceeeeeccCC----------CccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEE
Confidence 22 22111111111 111124556666667889999999998876644 444322211 1234556555
Q ss_pred EEecCCCCEEEEecCCCeEEEEe
Q 015371 190 CFADETGHLIFSGSDDSLCKVWD 212 (408)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd 212 (408)
.|+....+.+++.+. .-..+|.
T Consensus 636 ~f~sk~~t~vfa~sd-rP~viY~ 657 (1096)
T KOG1897|consen 636 TFSSKSRTAVFALSD-RPTVIYS 657 (1096)
T ss_pred EEeeCCceEEEEeCC-CCEEEEe
Confidence 666444455555443 3333443
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.16 Score=43.37 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=82.2
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee
Q 015371 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
.+-|....+.|+ +...|.+.=|-......-.........+++|.++.|++|.+.||+--.+.+|.+++....+......
T Consensus 27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344443334333 3334456666554321111111122234489999999999999999999999999985444322222
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEEEEecCCCCEEE
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIF 200 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~ 200 (408)
..... ....|....|+.+ .-++.-...| +-+|-+... ..++..+.|...|.-..|+ ++.+.++
T Consensus 106 ~~ck~----------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L 169 (657)
T KOG2377|consen 106 QECKT----------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL 169 (657)
T ss_pred HHhcc----------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence 11111 1124888899866 4566655444 566655333 3344556788889999998 5554433
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.22 E-value=0.25 Score=45.10 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=72.4
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeC--CCCceEEEeecCcEEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLS--PDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
....-+.-|.-++..++-+....+.|||...+....... ....+.|.++.|. |+++.+++.+....|.++.-....
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344445555555555554555679999998875333221 1334589999995 689999999999999998642111
Q ss_pred e-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC
Q 015371 119 R-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 170 (408)
Q Consensus 119 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 170 (408)
. .....+...+.+.... -...+|.+..|.++|..++.+ +..+.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~~---~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISS---HTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeec---CCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 0 0001111111111111 112368999999999755544 367888874
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.20 E-value=0.031 Score=30.15 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=26.8
Q ss_pred CceeEEEEcCCC---CeEEEEeCCCcEEEEEcCCC
Q 015371 41 SRVYTSQFSNDG---SFFVAASQESNIKVYNVDKN 72 (408)
Q Consensus 41 ~~v~~~~~s~~~---~~l~t~~~dg~i~iw~~~~~ 72 (408)
+.|.++.|||+. .+||.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 58888888899999999854
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=96.18 E-value=0.76 Score=41.45 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=85.4
Q ss_pred CCCeEEEEeCCC-----cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC--cEEEEEECCCCceeeee
Q 015371 51 DGSFFVAASQES-----NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--AIVNIVDVGSSARESLA 123 (408)
Q Consensus 51 ~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~w~~~~~~~~~~~ 123 (408)
++.++++||.++ .+..||..++.-.. .............+ .-++...+.|+.+ ..+..||..+++-....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 46678876653221 11111111111122 2367777777753 34677776554332222
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC---CeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCE
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~ 198 (408)
.+..... ....+ .-+|+..+.|+.+ ..+..||.++.+-... +...... .+++. -++.+
T Consensus 348 ~l~~~r~------------~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~--~~~~I 410 (480)
T PHA02790 348 SLLKPRC------------NPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV--FGRRL 410 (480)
T ss_pred CCCCCCc------------ccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE--ECCEE
Confidence 2111100 11112 2267766777654 3467888876543321 1111111 12222 34666
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-----CeEEEEeCCC
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 261 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 261 (408)
.+.|+ .+.+||.+ ......+..+....... +++. -+++..+.||.+ ..+..||..+
T Consensus 411 Yv~GG---~~e~ydp~--~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 411 FLVGR---NAEFYCES--SNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEECC---ceEEecCC--CCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 66664 46778864 11222222222111222 2222 257777887754 3467777665
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.13 Score=49.05 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCEEEEEec--CCeEEEEECCCCccee-----ee------cCcCCCceEEEEecCCCCEEEEecCCCeEE
Q 015371 143 GIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSL-----RI------PAHKSDVNTVCFADETGHLIFSGSDDSLCK 209 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~-----~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 209 (408)
++..+...+|+...++... +-.|..||+++-.... -+ ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 5666777778765554433 4478999987532211 11 112345678889866666778888899999
Q ss_pred EEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 210 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+..+. .....+.. .......++++|+|.|+.++.|-..|++.-|...-
T Consensus 182 V~~~~---~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTK---QLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhh---hhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 98864 12222222 23456789999999999999999999998887543
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.03 E-value=0.89 Score=39.38 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=54.4
Q ss_pred cceeeEecCCccEEEeec-------------CceEEEEEEecC------ceeeecccCceeEEEEcCCCCeEEEEeCCCc
Q 015371 3 VGREVNYSGRGRFSAADS-------------CHVLSRYLPVNG------PWKVDGMNSRVYTSQFSNDGSFFVAASQESN 63 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-------------~~~~~~~~~~~~------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~ 63 (408)
..+.++|.++|++.+++. ...+..+.+... ...+...-.....+++.++| ++++ .....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence 467899999999877652 113444433211 12333334456889999998 4444 44433
Q ss_pred EEEEEcCCC-------eeEEEecccc--cceeeEEEEEeCCCCceEEEee
Q 015371 64 IKVYNVDKN-------WKIQKDIETK--ALRWTITDTSLSPDQRFLVYAS 104 (408)
Q Consensus 64 i~iw~~~~~-------~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 104 (408)
.++.+.+.. +.+....... .+......++|.|||.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333344321 1111111111 0223578899999998766544
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.01 E-value=1.1 Score=40.13 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=85.5
Q ss_pred CceeEEEEcCCCCeEEEEe--CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC----CceEEEeecCcEEEEEEC
Q 015371 41 SRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD----QRFLVYASICAIVNIVDV 114 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~w~~ 114 (408)
.+|..++|....+.+.|.- .+|.+++=|. ..+...+ .|..+.|.|- ...|++......|.+|.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-------~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-------KVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-------cEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 4678889974333344431 2333333221 1122223 4889999984 335666667889999998
Q ss_pred CCCceee---eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC--cceeeecCcCCCceEE
Q 015371 115 GSSARES---LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN--KCSLRIPAHKSDVNTV 189 (408)
Q Consensus 115 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l 189 (408)
.....+. .......-...|.. =...+.|+|....|++-.....-.++++... .....++ ..+.|.|.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pv-------LpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCA 161 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPV-------LPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCA 161 (671)
T ss_pred ccCccccccceeeeeeeccCCccc-------CCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEE
Confidence 6332211 11111110001111 1235679999888877766554455665433 2333343 46889999
Q ss_pred EEecCCCCEEEEec-CCCeEEEEec
Q 015371 190 CFADETGHLIFSGS-DDSLCKVWDR 213 (408)
Q Consensus 190 ~~~~~~~~~l~~~~-~dg~i~iwd~ 213 (408)
+|. .||+.|+++- ..=.-++||-
T Consensus 162 CWT-~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 162 CWT-KDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred Eec-CcCCEEEEEeCCeEEEEEecC
Confidence 999 6777666543 3445688983
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=1.2 Score=40.92 Aligned_cols=193 Identities=8% Similarity=0.107 Sum_probs=91.8
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee----eecccCCeEEEE
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV----LMGHLEGITFID 237 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i~~~~ 237 (408)
.-.|+|+++ +|..+..+.-....+-.+.|+ +...|++...+|++.+|++- +..+.. .......|..+.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEE
Confidence 456888887 466666554444588999998 45567777899999999973 222222 122334455555
Q ss_pred ecCCCCeEEEeecCCeEEE-EeCCCCcCcccc---ccccccccccceeeccccccee-eccCCCcceee-----eecccc
Q 015371 238 SRRDGRYFISNGKDQTTKL-WDIRKMSSNTTD---NSRLRDYDWDYRWMEYPSYARR-LKHPHDQSLAT-----YKGHSV 307 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~ 307 (408)
+..+|-.+++. +|.+.+ -+.......... ........|............. +...-+..+.. ...|..
T Consensus 135 ~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 135 FFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 55555433333 344333 332221110000 0000111121111100000000 00000000000 000000
Q ss_pred eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-CCCeeeeeEeCC
Q 015371 308 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPI 365 (408)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~ 365 (408)
............||+.++|+--...|.|.+-+....+....+... ..+-..++|.-+
T Consensus 213 -~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 213 -SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred -CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 000122233457788999999999999999988877777666521 122235555543
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.98 E-value=0.45 Score=41.17 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=74.6
Q ss_pred CceeEEEEcCCCCeEEEEe-----------CCC-cEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeecCc
Q 015371 41 SRVYTSQFSNDGSFFVAAS-----------QES-NIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~-----------~dg-~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 107 (408)
.....|+|.++|+++++-. ..+ .|.+++-.++ ....+.............+++.+++ |+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999877642 123 6777764322 1111111111111246789999888 44444443
Q ss_pred EEEEEECCCCceee--eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-------------------CeEE
Q 015371 108 IVNIVDVGSSARES--LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------------------NFIY 166 (408)
Q Consensus 108 ~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~ 166 (408)
..++.+........ ...+ ...+ ......+......++|.|||.+.++-+.. |.|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l--~~~~--~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVL--LSGF--GGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred EEEEeCCCCCCCCCCccEEE--EEcc--CCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 33343443221100 0000 0000 00000012247789999999765544421 3455
Q ss_pred EEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec
Q 015371 167 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
.++...++......+ -.....++|+ ++++++++-.
T Consensus 168 r~~pdg~~~e~~a~G-~rnp~Gl~~d-~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKLRVVAHG-FQNPYGHSVD-SWGDVFFCDN 202 (367)
T ss_pred EEecCCCeEEEEecC-cCCCccceEC-CCCCEEEEcc
Confidence 555554432221222 2334677887 5777765533
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.96 E-value=0.97 Score=41.97 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=91.1
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEE------ecc-------------cccceeeEEEEEeCC--CCceEEEeecCcEEE
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQK------DIE-------------TKALRWTITDTSLSP--DQRFLVYASICAIVN 110 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~------~~~-------------~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 110 (408)
..+|+++. .+.|.||+.+.-..... ... .......|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777765 56899999865322110 000 000112455555443 567888999999999
Q ss_pred EEECCCCceeeeee---eee-eeeeeeecC-CCCCccceEEEEEc--CCCCEEEEEecCCeEEEEECCCC--cc-eeeec
Q 015371 111 IVDVGSSARESLAN---VTI-HKGLDFSAD-GDEDEFGIFSVKFS--TDGQELVAAGSDNFIYVYDLQAN--KC-SLRIP 180 (408)
Q Consensus 111 ~w~~~~~~~~~~~~---~~~-~~~~~~~~~-~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~--~~-~~~~~ 180 (408)
+|.+++--...... ... .......+. ...-...++.++++ ...++||+++....|.||-.... +. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 99874211000000 000 000000000 00112268999998 78888888888888888765432 11 11111
Q ss_pred CcCCCceEEEEecCC----C-CEEEEecCCCeEEEEec
Q 015371 181 AHKSDVNTVCFADET----G-HLIFSGSDDSLCKVWDR 213 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~----~-~~l~~~~~dg~i~iwd~ 213 (408)
.+..-|-+++|.+.+ + ..+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 256778999998433 2 27888999999998887
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.89 E-value=0.71 Score=37.05 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=106.6
Q ss_pred CceeEEEEcCCCCeEEEEeCCC--cEEEEEcCCCeeEEEecccc-cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 41 SRVYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETK-ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++......... -....++-+ +++.....-.++...+||..+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEccccc
Confidence 3355688878888888887765 69999999986554432222 222233322 3444455567899999999887
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCc-----CCCceEEEEe
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFA 192 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~l~~~ 192 (408)
+......+.. .=..++ .|++.|+.......++.+|.++.+....+... -..++.|.|.
T Consensus 121 ~~~~~~~y~~---------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 121 KKIGTFPYPG---------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEEEEEE-SS---------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred eEEEEEecCC---------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 6544333321 234454 47778888877889999999887776665432 1345667775
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeee---------------cccCCeEEEEecCCCCeEEEeec
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---------------GHLEGITFIDSRRDGRYFISNGK 250 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~ 250 (408)
++.+.|=.-....|...|.. ++.....+. ....-.+.|++.|..+.|...+.
T Consensus 184 --~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 --NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred --cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 56555555555566666643 344333221 11345789999987776655553
No 427
>PRK10115 protease 2; Provisional
Probab=95.66 E-value=2.1 Score=40.68 Aligned_cols=113 Identities=9% Similarity=0.064 Sum_probs=67.0
Q ss_pred eeEEEEEeCCCCceEEEeecC-----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 86 WTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..+..+.|+||+++|+.+... -.+++.|+.++.... ..+.. .-..++|.+|++.|+...
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i~~---------------~~~~~~w~~D~~~~~y~~ 190 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELLDN---------------VEPSFVWANDSWTFYYVR 190 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccccC---------------cceEEEEeeCCCEEEEEE
Confidence 357788999999998876432 357888887664211 01100 013589999998777664
Q ss_pred cC------CeEEEEECCCC--cceeeecCcCCCceEEEEecCCCCEEEEecC---CCeEEEEecc
Q 015371 161 SD------NFIYVYDLQAN--KCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRR 214 (408)
Q Consensus 161 ~d------g~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg~i~iwd~~ 214 (408)
.+ ..|+.+++.++ +....+........-..+.+.++.+++..+. ++.+.+++..
T Consensus 191 ~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 191 KHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 42 36888898887 3333444333333322333346766555443 3468888853
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.48 Score=40.66 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=69.9
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee----cCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 218 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (408)
+|.++.|++|.+.+++--.+..|.+++....+....+ +.....|....|+ .+ .-++.-+..| +.+|... +
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~---p 141 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL---P 141 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---h
Confidence 7999999999999999999999999998544433322 3334568889998 44 3444444333 5666542 3
Q ss_pred CCccceeeecccCCeEEEEecCCCCeEEEe
Q 015371 219 KGRANGVLMGHLEGITFIDSRRDGRYFISN 248 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 248 (408)
....++..+.|...|.-..|.++.+.++-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 555666667788889988999888754433
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.19 E-value=2 Score=37.73 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=84.0
Q ss_pred eCCCCceEEE-eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-------EEEEEecCCe
Q 015371 93 LSPDQRFLVY-ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-------ELVAAGSDNF 164 (408)
Q Consensus 93 ~~~~~~~l~~-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~ 164 (408)
...+..+|+. +.....++-.|++.++. +..+..+.. + -+.|.|+.+ .-++|-.+..
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkv--veeW~~~dd-------------v-vVqy~p~~kf~qmt~eqtlvGlS~~s 538 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKV--VEEWDLKDD-------------V-VVQYNPYFKFQQMTDEQTLVGLSDYS 538 (776)
T ss_pred ecCCcceEEecCCCcccceeeeccccee--eeEeecCCc-------------c-eeecCCchhHHhcCccceEEeecccc
Confidence 3344554443 34445566667776665 333444333 3 456666321 2334444566
Q ss_pred EEEEECCCCc-ceeeec----CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEec
Q 015371 165 IYVYDLQANK-CSLRIP----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 239 (408)
Q Consensus 165 i~i~d~~~~~-~~~~~~----~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (408)
|.-.|.+-.. .+.... .......+..- ....++++++..|-|++||. -.......+.+....|..+..+
T Consensus 539 vFrIDPR~~gNKi~v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDR----ig~rAKtalP~lG~aIk~idvt 612 (776)
T COG5167 539 VFRIDPRARGNKIKVVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDR----IGKRAKTALPGLGDAIKHIDVT 612 (776)
T ss_pred eEEecccccCCceeeeeehhcccccccccccc--ccCceEEEecCCCceeeehh----hcchhhhcCcccccceeeeEee
Confidence 6666654322 111111 01122223222 34568999999999999994 2333344466677889999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCC
Q 015371 240 RDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.+|+++++.+ ...+.+-|++-
T Consensus 613 a~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 613 ANGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred cCCcEEEEee-cceEEEEeccc
Confidence 9999887766 45788888765
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.18 E-value=0.045 Score=50.65 Aligned_cols=183 Identities=14% Similarity=0.056 Sum_probs=99.0
Q ss_pred CCeEEEEECCCCcc-eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee-----eecccCCeEE
Q 015371 162 DNFIYVYDLQANKC-SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-----LMGHLEGITF 235 (408)
Q Consensus 162 dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~i~~ 235 (408)
.+.+++-+....-. ...+++..+.+-.+.|...+...+. -.-|.+.|||+.. ..++.... .......+.-
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccccceEEeecCcCCCCcce
Confidence 45567766654321 2334677788888888633322232 3446788999863 23332222 2222334444
Q ss_pred EEec---CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE
Q 015371 236 IDSR---RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 312 (408)
Q Consensus 236 ~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
+.|. ++..++..+-.++.+++...+.... ..+.+|.....-+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----------------------------------~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-----------------------------------SLFRSHSQRVTDM 230 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-----------------------------------HHHHhcCCCcccH
Confidence 5554 4666777777888888877765211 1122222111000
Q ss_pred -----EEEeeccccCCCcEEEEeeCCCeEEEEECC-----CCceeEEEccCCC-CeeeeeEeCCC---------CeEEee
Q 015371 313 -----RCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-----SGAQVAKLDFHNA-PVRDCCWHPIY---------PMLISS 372 (408)
Q Consensus 313 -----~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~-~v~~~~~~~~~---------~~l~s~ 372 (408)
....-...||||+.++..+.||.+++|.+. ...+++..+.|.+ +-.|.-++.+. .+++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 000111378999999999999998888764 2345566666763 33332233321 134444
Q ss_pred c-CCCcEEEEee
Q 015371 373 S-WDCNIVRWEI 383 (408)
Q Consensus 373 ~-~dg~v~iw~~ 383 (408)
+ ....+++|.-
T Consensus 311 td~nre~k~w~~ 322 (1283)
T KOG1916|consen 311 TDVNREEKFWAE 322 (1283)
T ss_pred ccCCcceeEeec
Confidence 4 3455888864
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.11 E-value=1.4 Score=35.36 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=127.6
Q ss_pred ceeeEecCCcc-EEEeecCceEEEEEEecCcee--eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGR-FSAADSCHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
.+.++-+|||. +....+...+-++-|...... -.+-...-..|..-|||..-++-+.. -|.-.|-++.+...-.+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 45677788885 444444444445444433222 12444556667788888776664433 344455444433322233
Q ss_pred cccceeeEEEEEeCCCCceEEEeecC---------cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASIC---------AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST 151 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (408)
............|.+.|++-.++... +.+++|+...+. ....|+..|
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------------------------gpyGi~atp 198 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG------------------------GPYGICATP 198 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC------------------------CCcceEECC
Confidence 33334567788899999988887521 223444332211 366788899
Q ss_pred CCCEEEEEecCCeEEEEECCCCcceeeec---CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec
Q 015371 152 DGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG 228 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 228 (408)
||..-++.-.+..|-..|..++.. ..+. .....-..+ |+.+.+..-++-...+.+.-+|.. ...-....+.+
T Consensus 199 dGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRri-wsdpig~~wittwg~g~l~rfdPs---~~sW~eypLPg 273 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRI-WSDPIGRAWITTWGTGSLHRFDPS---VTSWIEYPLPG 273 (353)
T ss_pred CCcEEEEeccccceEEcccccCCc-ceecCCCccccccccc-ccCccCcEEEeccCCceeeEeCcc---cccceeeeCCC
Confidence 998777766677777777766632 2221 111222333 343667777777777888888853 11122223444
Q ss_pred ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 229 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 229 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
....-.++.+...++.-.+--..|.|.-+|-++
T Consensus 274 s~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 274 SKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 444556666666666555444456676677665
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.07 E-value=0.0035 Score=53.31 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=94.2
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCceeee
Q 015371 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESL 122 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~ 122 (408)
....|-|.+.-++.++.+..+..||-... ..... .. .+....++|..++..++ .+-..+.+.+||+.+.....+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~---tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NP---TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CC---chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34567777766888888889999985432 22222 11 22466789988887665 455678999999987654332
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEe
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~ 202 (408)
..--.+ .-.-+.|++....++.+...|.+.+++..+...+...-.|...++++++. +.+ +.+.+
T Consensus 113 E~gg~~--------------s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~vil~ 176 (615)
T KOG2247|consen 113 ESGGTS--------------SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-YVILC 176 (615)
T ss_pred hccCcc--------------hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-eeeec
Confidence 221111 11227889988889999889999999988776666665589999999998 433 33333
Q ss_pred cC
Q 015371 203 SD 204 (408)
Q Consensus 203 ~~ 204 (408)
+.
T Consensus 177 dc 178 (615)
T KOG2247|consen 177 DC 178 (615)
T ss_pred Cc
Confidence 33
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.02 E-value=2.1 Score=37.07 Aligned_cols=157 Identities=9% Similarity=0.056 Sum_probs=71.2
Q ss_pred EEEcCCCCeEEEE--eC----CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee---------------
Q 015371 46 SQFSNDGSFFVAA--SQ----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS--------------- 104 (408)
Q Consensus 46 ~~~s~~~~~l~t~--~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------- 104 (408)
+.--|+|..++++ .. -|-+.+.|-++.+....-........--..+-|.|..+.+++..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 3445789888885 22 24577777665433333222222223445677778777777653
Q ss_pred -----cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEEEe-cCCeEEEEEC-CCCcc
Q 015371 105 -----ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAG-SDNFIYVYDL-QANKC 175 (408)
Q Consensus 105 -----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~dg~i~i~d~-~~~~~ 175 (408)
...++.+||+.+.+..+...+..... ....+.|.. +..+=++++ -.+.|..|-- +.++-
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~------------~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ------------MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW 282 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEE------------EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCC------------ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence 24579999999988765555442222 255666654 344433333 3455555543 33321
Q ss_pred ----eeeecC-----------------cCCCceEEEEecCCCCEEEEe-cCCCeEEEEeccc
Q 015371 176 ----SLRIPA-----------------HKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRC 215 (408)
Q Consensus 176 ----~~~~~~-----------------~~~~v~~l~~~~~~~~~l~~~-~~dg~i~iwd~~~ 215 (408)
+..+.. -..-|+.|..| .|.++|... -.+|.|+.||+..
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SS
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCC
Confidence 111111 13457999999 666666554 5689999999863
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.91 E-value=1.3 Score=34.15 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=81.9
Q ss_pred ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC---C---eEEEE---
Q 015371 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---N---FIYVY--- 168 (408)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~i~--- 168 (408)
+.|+.+.....|.+|++.+.+......+.... .|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~-------------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG-------------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchh-------------heeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence 45545466778999999966666666655443 59999999999999987432 2 56665
Q ss_pred ECC--CCccee-eecC---------------------cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce
Q 015371 169 DLQ--ANKCSL-RIPA---------------------HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 224 (408)
Q Consensus 169 d~~--~~~~~~-~~~~---------------------~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 224 (408)
+.. ..+++. .+-+ -..++.+++..|-.|++++.. ++++.+|.+...........
T Consensus 96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~ 173 (215)
T PF14761_consen 96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFS 173 (215)
T ss_pred hhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEeccccc
Confidence 221 111111 1111 234678888887778766543 45889998753222111111
Q ss_pred --ee----ecccC--CeEEEEecCCCCeEEEeecCCeEEEEeC
Q 015371 225 --VL----MGHLE--GITFIDSRRDGRYFISNGKDQTTKLWDI 259 (408)
Q Consensus 225 --~~----~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 259 (408)
.+ ..|.. ....+++. +.+++..+ +-.+++..+
T Consensus 174 ~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 174 FLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 11 11111 13344444 66777766 446776654
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=94.81 E-value=3 Score=37.75 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=32.4
Q ss_pred CCCEEEEEecC--CeEEEEECCCCccee--eecCcCCCceEEEEecCCCCEEEEecCCC---eEEEEecc
Q 015371 152 DGQELVAAGSD--NFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDDS---LCKVWDRR 214 (408)
Q Consensus 152 ~~~~l~~~~~d--g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~~~~~dg---~i~iwd~~ 214 (408)
++...++|+.+ ..+..||..+++... .+...... .+++. -++.+.+.|+.++ .+..||.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~--~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVAS--INNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEE--ECCEEEEecCcCCCCccEEEEeCC
Confidence 66666777653 357788876553322 22211111 12222 3577778877654 46678854
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=3.4 Score=38.27 Aligned_cols=180 Identities=10% Similarity=0.058 Sum_probs=91.1
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED 140 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (408)
-..|+|++.. |..+....-.++ .+..+.|+.+.. |++...+|++++|++........ .. +.. ..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~-sv-g~e---------~~ 126 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN-SV-GFE---------SQ 126 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchhhhccc-cc-ccc---------cc
Confidence 3458888864 334443333333 688899997665 55567899999999876543221 11 000 00
Q ss_pred ccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec---CcCCCceEEEEecCCCCEEEEecCCCe--EEEEeccc
Q 015371 141 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETGHLIFSGSDDSL--CKVWDRRC 215 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~~~~~dg~--i~iwd~~~ 215 (408)
...|..+.+..+| +++-..+|.+.+-+-.......+++ ....+-+|-...++..+....-.-+-. ..++-..
T Consensus 127 ~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~- 203 (829)
T KOG2280|consen 127 MSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE- 203 (829)
T ss_pred cCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee-
Confidence 1135555665566 3434445665554332222233332 222222333333222211111111100 0111111
Q ss_pred cccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 216 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 216 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
........+....+.+..+.++|+.++|+--..+|.|.+-+...
T Consensus 204 --~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 204 --ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred --cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 11122222222346678899999999999999999998887665
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.75 E-value=3.9 Score=38.79 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=53.7
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCC----------ceeee-eeeeeeeeeeeecCCCCCccceEEEEEcCC-
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSS----------ARESL-ANVTIHKGLDFSADGDEDEFGIFSVKFSTD- 152 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 152 (408)
.-.|..+.++|+|++|+..+..|. .|..+... +.... ...... -..........|..+.|+|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~----~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVD----ERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEec----hhhccCCCCceEEEEEEcCCC
Confidence 346899999999999998887664 44444211 00000 001000 00111234457999999995
Q ss_pred --CCEEEEEecCCeEEEEECCCC
Q 015371 153 --GQELVAAGSDNFIYVYDLQAN 173 (408)
Q Consensus 153 --~~~l~~~~~dg~i~i~d~~~~ 173 (408)
+..|++-+.|+.+++||+...
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCC
Confidence 578999999999999999654
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.71 E-value=3.7 Score=38.37 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=72.7
Q ss_pred ceEEEEEcC--CCCEEEEEecCCeEEEEECCC-------C----c---------ceeeecCcCCCceEEEEe-cCCCCEE
Q 015371 143 GIFSVKFST--DGQELVAAGSDNFIYVYDLQA-------N----K---------CSLRIPAHKSDVNTVCFA-DETGHLI 199 (408)
Q Consensus 143 ~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~----~---------~~~~~~~~~~~v~~l~~~-~~~~~~l 199 (408)
.|+.|.... +...|+++..||.|.+|..++ . + +...+. -...+.+++++ ....++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 466665554 456788899999999997631 0 0 111111 23466777775 2345678
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC---C---eEEEeecCCeEEEEeC
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---R---YFISNGKDQTTKLWDI 259 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 259 (408)
|+++....|.||-.... ........-..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~-~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALV-DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecc-ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888875421 1111111122366788999987643 2 6778888999999888
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.64 E-value=4.2 Score=38.61 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=54.2
Q ss_pred ccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 141 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
...|..+.++|+|.+++..+..| |.|..+... .....+.+....|.|-.+. -+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~-v~~~~~-------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVP-VDERFF-------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEE-echhhc--------------------
Confidence 45799999999999999888755 566665321 1112222222233333322 111111
Q ss_pred CccceeeecccCCeEEEEecCC---CCeEEEeecCCeEEEEeCCCC
Q 015371 220 GRANGVLMGHLEGITFIDSRRD---GRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~ 262 (408)
...+...|..+.|+|. +..|++-..|+.+++||+...
T Consensus 142 ------~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 ------TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ------cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1112345666777775 467777778888888888653
No 440
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.60 E-value=2 Score=34.65 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCEEEEEecCC--eEEEEECCCCcceeeecC-cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 144 IFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
...+.|..++.++-+.+.-| .|+.+|+.+++......- ....-..++.. ++.+....-.++...+||.. ..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence 55678877887777777655 799999999987655432 12233455554 34555566778999999964 45
Q ss_pred ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee
Q 015371 221 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300 (408)
Q Consensus 221 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
+.+..+.- .+.=..++ .+++.|+.+.....++++|..+...... +.
T Consensus 121 ~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~-------------------------------i~ 166 (264)
T PF05096_consen 121 KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT-------------------------------IQ 166 (264)
T ss_dssp EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE-------------------------------EE
T ss_pred eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE-------------------------------EE
Confidence 55555532 23345555 4566677666677899999876332111 11
Q ss_pred eeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc------------C---CCCeeeeeEeCC
Q 015371 301 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------------H---NAPVRDCCWHPI 365 (408)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------~---~~~v~~~~~~~~ 365 (408)
.......... ..-+.+- +|...|=.-....|...|..+|+.+..+.. + ..-.+.++|.|.
T Consensus 167 V~~~g~pv~~----LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 167 VTDNGRPVSN----LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -EETTEE-------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEECCEECCC----cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 1110000000 0011111 366666666667788889999988776621 1 235788999988
Q ss_pred CC-eEEee
Q 015371 366 YP-MLISS 372 (408)
Q Consensus 366 ~~-~l~s~ 372 (408)
.+ +++||
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 77 55555
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=1 Score=44.24 Aligned_cols=158 Identities=14% Similarity=0.292 Sum_probs=87.5
Q ss_pred EEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEE--------eCCCCceEEEeecCcEEEEEECC
Q 015371 45 TSQFSND-GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTS--------LSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 45 ~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
.+-+-|. ++.-+| .|..+.+|+.+++......-.... .|..+. |.|.=+++++.+.--.|.++-+.
T Consensus 83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh---tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSH---TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhh---hheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 3444444 333333 477899999998655543322222 455554 33444556555555666666553
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC--CCC---c-c--------------
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL--QAN---K-C-------------- 175 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~---~-~-------------- 175 (408)
-.+......... ..+.... ....|.++....+|+.+++ +.||.|+-.-. .++ + +
T Consensus 158 ~~~~~~~~~~f~-~~~~i~~----dg~~V~~I~~t~nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 158 FDEFTGELSIFN-TSFKISV----DGVSVNCITYTENGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred eccccCcccccc-cceeeec----CCceEEEEEeccCCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 322111111000 0011111 1225889998878875554 56774442221 211 0 0
Q ss_pred --eeeec-CcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 176 --SLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 176 --~~~~~-~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
+..+. .+..+|..++.. ...+++.+-++.|+|.+||+.
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred hhhhcCCCCCCCcceeeEec-cccceeeeeccCceEEEEEcc
Confidence 11123 467799999998 788899999999999999985
No 442
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=1.1 Score=44.13 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 174 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 174 (408)
....++|+|.-..++.++..|.|+++-...-+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceE
Confidence 45678999999999999999999999765433
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=94.29 E-value=3 Score=35.57 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=80.4
Q ss_pred eeEEEEEeCCCCceEEEeecCcEEEE-EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 86 WTITDTSLSPDQRFLVYASICAIVNI-VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~dg~i~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
..+.++.+.|++.+++++. .|.+.. ++-....-..... . ....+.++.+.++++.++++ ..|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~--~------------~~~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQR--N------------SSRRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeC--C------------CcccceeeeEcCCCCEEEEe-cCCE
Confidence 3688999999987776654 454432 2211111111111 1 11258899999999876665 4676
Q ss_pred EEEEECCCCcceeeecC----cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee---ecccCCeEEEE
Q 015371 165 IYVYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL---MGHLEGITFID 237 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~ 237 (408)
+.+-....++.-..... ....+..+.+. +++..++ ++.+|.+..-. . .++.-... ..-......+.
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~-~~~~~~~-~G~~G~v~~S~-d----~G~tW~~~~~~~~~~~~~~~~~ 309 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYR-TPGEIWA-GGGNGTLLVSK-D----GGKTWEKDPVGEEVPSNFYKIV 309 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEc-CCCCEEE-EcCCCeEEEeC-C----CCCCCeECCcCCCCCcceEEEE
Confidence 65433344432221111 12357788888 5565554 45567654321 1 22222222 12224577787
Q ss_pred ecCCCCeEEEeecCCeEEEEeC
Q 015371 238 SRRDGRYFISNGKDQTTKLWDI 259 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~ 259 (408)
+..+++.++ .+..|.|.-|+-
T Consensus 310 ~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 310 FLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred EeCCCceEE-ECCCceEEEecC
Confidence 776666555 456788777653
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.24 E-value=2 Score=33.26 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=76.7
Q ss_pred CeEEEEeCCCcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeecC---c---EEEEE---ECCCCceeee
Q 015371 53 SFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---A---IVNIV---DVGSSARESL 122 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~~w---~~~~~~~~~~ 122 (408)
+.|..+.....|.+|++... -........- +.|..+.++..|++|++--.+ . .+|+| +....+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 34444355677999999832 1222222222 379999999999999986432 2 56664 2221111111
Q ss_pred e-eeeeeeee---------eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc-ee-----ee-----cC
Q 015371 123 A-NVTIHKGL---------DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SL-----RI-----PA 181 (408)
Q Consensus 123 ~-~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~-----~~-----~~ 181 (408)
. ..-++... .+....-.-..++.+++-.|-...|++|+ ++.+.+|.+..... .. .+ ..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 1 11111000 00000001133577888888444466665 56788888754432 11 11 11
Q ss_pred cC-CCceEEEEecCCCCEEEEecCCCeEEEEec
Q 015371 182 HK-SDVNTVCFADETGHLIFSGSDDSLCKVWDR 213 (408)
Q Consensus 182 ~~-~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~ 213 (408)
|. -.+..+++. +.++|..+. -.++++.+
T Consensus 185 ~~~~~p~~v~ic---~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 185 IDNFKPTQVAIC---EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred ecCceEEEEEEE---eeEEEEecC-CEEEEEEE
Confidence 22 224566666 567766654 35665543
No 445
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.24 E-value=0.4 Score=37.77 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=48.9
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc----cc-------cceeeEEEEEeCCCCceEEEeecCcEEEEEECCC
Q 015371 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE----TK-------ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (408)
Q Consensus 48 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 116 (408)
+..++++|++.+.+|.+++||+.+.+.+..... .. .....|..+.++.+|.-|++-+ +|....|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 445788999999999999999998765544311 11 2334688888888887776654 57778887654
Q ss_pred C
Q 015371 117 S 117 (408)
Q Consensus 117 ~ 117 (408)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.23 E-value=0.45 Score=37.51 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=49.7
Q ss_pred eCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeee-cCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC
Q 015371 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFS-ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ 171 (408)
Q Consensus 93 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 171 (408)
+..++++|++.+.+|.+++||+.+.+..... .....-+... .........|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4457888999999999999999987653221 0000000000 00002344688888988887766654 5788888875
Q ss_pred CCc
Q 015371 172 ANK 174 (408)
Q Consensus 172 ~~~ 174 (408)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 443
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=94.22 E-value=3.1 Score=35.47 Aligned_cols=278 Identities=9% Similarity=0.058 Sum_probs=127.0
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC-CeeEEEecc-cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQKDIE-TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
...+.+|.|..+.+-+|+|. +|. ||...+ ++.-..... .......+.++.|.++ ..+++ +..+.| +...++
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCC
Confidence 55789999986666677664 453 444333 222222111 1112234778888654 33444 344443 333322
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCCCceEEEEecCCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETG 196 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~ 196 (408)
...-.. ..... ....+ ........+ +. +..++..|.|..=+ ..++.-..+ ..-...+.++.+. +++
T Consensus 118 G~tW~~-~~~~~------~~~~~--~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~-~~g 184 (334)
T PRK13684 118 GKNWTR-IPLSE------KLPGS--PYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRS-PDG 184 (334)
T ss_pred CCCCeE-ccCCc------CCCCC--ceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEEC-CCC
Confidence 211111 00000 00011 122222222 22 33334455553332 223222222 2234568889888 666
Q ss_pred CEEEEecCCCeEEE-EeccccccCCc-cceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccc
Q 015371 197 HLIFSGSDDSLCKV-WDRRCFISKGR-ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 197 ~~l~~~~~dg~i~i-wd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
.+++++ ..|.+.. +|- .++ ...........++.+.+.++++.++++ ..|.+++=....+.
T Consensus 185 ~~v~~g-~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~----------- 246 (334)
T PRK13684 185 KYVAVS-SRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE----------- 246 (334)
T ss_pred eEEEEe-CCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC-----------
Confidence 665554 4555443 221 111 222222344678899999998876665 46765432122110
Q ss_pred ccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc--
Q 015371 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-- 352 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 352 (408)
.-....... .......+.+.+.+++..+++| .+|.|. .....++.-.....
T Consensus 247 -----------------------sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~ 299 (334)
T PRK13684 247 -----------------------SWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE 299 (334)
T ss_pred -----------------------ccccccCCc--cccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC
Confidence 000000000 0000112333456666655554 566554 34455554444332
Q ss_pred -CCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 353 -HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
-....+.+.|..+++.++ .+..|.|.-|+=
T Consensus 300 ~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 300 EVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 223577788877666655 556788877753
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.07 E-value=2.8 Score=34.36 Aligned_cols=204 Identities=15% Similarity=0.124 Sum_probs=109.1
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCC------CeeEEEeccc-cc--ceeeEEEEEeCCCCc------------eE
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDK------NWKIQKDIET-KA--LRWTITDTSLSPDQR------------FL 100 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~------~~~~~~~~~~-~~--~~~~v~~~~~~~~~~------------~l 100 (408)
.-+.|+|+|.+.+-++....+...+||... ...+...+.. .. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357899999998888888888999999861 1122211111 11 123567777765332 35
Q ss_pred EEeecCcEEEEEECCCCce---eeeeeeeeeeeeeeecCCCCCccceEEEEEc--CCCCEEEEEec-CCeEEEEECCCCc
Q 015371 101 VYASICAIVNIVDVGSSAR---ESLANVTIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGS-DNFIYVYDLQANK 174 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-dg~i~i~d~~~~~ 174 (408)
+.+++||+|.-|.-.-... .....+.... . ..--..+++. ..+.+|+.+.. .++|-++|-.=.+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~--------~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ--------Q--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCC--------C--cceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 7788999999998533222 0111111000 0 0012334443 33556666543 6888888754222
Q ss_pred cee--ee-----cCcCCCceEEE---------Ee--cCCCCEEEEecCCCeEEEEeccccccCCccceeee--cccCCeE
Q 015371 175 CSL--RI-----PAHKSDVNTVC---------FA--DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGIT 234 (408)
Q Consensus 175 ~~~--~~-----~~~~~~v~~l~---------~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~ 234 (408)
... .+ +..-. ...+. |. .++.+.=+.|..-|.|-+||+ .+..++.+. +.-..-.
T Consensus 174 ~~~~g~F~DP~iPagyA-PFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~LNaPW 247 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYA-PFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRLNAPW 247 (336)
T ss_pred ccCCCCccCCCCCCCCC-CcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcccCCc
Confidence 110 01 11000 11111 11 011122233444578999996 466666552 2334445
Q ss_pred EEEecC------CCCeEEEeecCCeEEEEeCCC
Q 015371 235 FIDSRR------DGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 235 ~~~~~~------~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.|+..| .+.+|+---.||+|..||..+
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 666654 466777767799999999876
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.79 E-value=2.4 Score=37.34 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
...|+|+++..|-|++||--..+....+.+-...|..+..+.+|+++++.+. ..+.+-|++.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 4679999999999999996544445556677788999999999997766654 4677777653
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.76 E-value=3.8 Score=34.83 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=64.3
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCc------EEEEEcCCC----e--eEEEeccccccee--------eEEEEEeCCCCce
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESN------IKVYNVDKN----W--KIQKDIETKALRW--------TITDTSLSPDQRF 99 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~------i~iw~~~~~----~--~~~~~~~~~~~~~--------~v~~~~~~~~~~~ 99 (408)
-+.+..+.+.+++..+++.+.+|. +...++... . ............+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 366888999976666666677777 665555431 0 1111111111111 3446788777877
Q ss_pred EEEeecC------cEEEEEECCCCceeeeeeeeeeeeeeeec---CCCCCccceEEEEEcCCCCEEEEEec
Q 015371 100 LVYASIC------AIVNIVDVGSSARESLANVTIHKGLDFSA---DGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 100 l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
+++.-.+ ..|..++.. +.......+ ........ ...........++++|+|+.|+++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~v--P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPV--PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcc--ccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 7766555 677777765 333211111 11111111 12223446999999999997777644
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.75 E-value=0.011 Score=50.44 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=92.7
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEE-EeecCCeEEEEeCCCCc
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI-SNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~ 263 (408)
..-...|-+.+.+ ++.++.+..+..||- .++..... ...+....++|..++..++ .+-..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~-----agq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHN-LAVACANTIVIYYDK-----AGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCCc-eehhhhhhHHHhhhh-----hcceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3345567744445 777788888999993 23322222 2344556677877776544 45567889999998733
Q ss_pred CccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
..+.. +.+... .. -..|++.+..++.+...|.+.+++..+
T Consensus 109 tqqLE---------------------------------~gg~~s-~s------ll~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 109 TQQLE---------------------------------SGGTSS-KS------LLAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred HHHHh---------------------------------ccCcch-HH------HHhhccCCccccccccccceEEEeccc
Confidence 21111 011100 00 135777788899998999999999988
Q ss_pred CceeEEEccCCCCeeeeeEeCCCCeEEeecCCCc
Q 015371 344 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCN 377 (408)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 377 (408)
.+.+-..-.|..++++++|.+.+. .+.++.|..
T Consensus 149 sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 149 SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred hhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 777766656889999999998764 444554443
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.60 E-value=0.18 Score=47.01 Aligned_cols=190 Identities=11% Similarity=0.032 Sum_probs=101.1
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCC--CceeeeeeeeeeeeeeeecCCC
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS--SARESLANVTIHKGLDFSADGD 138 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
+-+++-+...... .....++..+.|-.+.|-. +...++ -.-|.+.+|+++- ++......+.....
T Consensus 111 ~~vrvaN~~~sm~--~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p-------- 178 (1283)
T KOG1916|consen 111 NGVRVANQEPSMR--HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP-------- 178 (1283)
T ss_pred hhhhhccCcchhH--HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc--------
Confidence 4466665544311 1112234445677777732 222222 2336788898764 22221111111110
Q ss_pred CCccceEEEEEcC---CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe----------cCCCCEEEEecCC
Q 015371 139 EDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA----------DETGHLIFSGSDD 205 (408)
Q Consensus 139 ~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~----------~~~~~~l~~~~~d 205 (408)
....+.-+.|.| +..++..+-.++.|++.++..... ..+.+|...+..++|. .+||..|+.+..|
T Consensus 179 -~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 179 -YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred -CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 011234455554 566777777788998888765433 4455577766655442 2889999999999
Q ss_pred CeEEEEecccc-ccCCccceeeeccc-CCeEEEEecCCCC---------eEEEeec-CCeEEEEeCCCCcCc
Q 015371 206 SLCKVWDRRCF-ISKGRANGVLMGHL-EGITFIDSRRDGR---------YFISNGK-DQTTKLWDIRKMSSN 265 (408)
Q Consensus 206 g~i~iwd~~~~-~~~~~~~~~~~~~~-~~i~~~~~~~~~~---------~l~~~~~-d~~i~iwd~~~~~~~ 265 (408)
|.+++|.+.-. .....+...++.|. .+-.|..++.+.. ++++++. +..+++|.-....|.
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 99988875310 11334555666676 3333333443222 3344443 456888887665444
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.47 E-value=0.15 Score=43.50 Aligned_cols=162 Identities=9% Similarity=0.120 Sum_probs=93.9
Q ss_pred eeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE-EEEEcCCCCEEEEEecCCe
Q 015371 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~ 164 (408)
..|..+-..|||+.|..-+. .++.++++.+......+......+ +....|+ .+..-..|.-++++..||.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg--------~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG--------DSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC--------chHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 46778889999999887664 678889887654432221111111 0001122 2222335667888888998
Q ss_pred EEEE-ECCCC-cc----eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 165 IYVY-DLQAN-KC----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 165 i~i~-d~~~~-~~----~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
|.-| |.+.+ .+ ++.++-...++..+.-. .+.+-+++-+.+|++.++.. .......+..--..+.-+++
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~s-----t~~~~lL~~~~~~~~~~~~~ 365 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYS-----TSEKLLLFERAYQAPQLVAM 365 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeec-----ccCcceehhhhhcCcceeee
Confidence 8887 44332 21 11122122333333322 34456788888999988873 22222222223346677899
Q ss_pred cCCCCeEEEeecCCeEEEEeCCCCc
Q 015371 239 RRDGRYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 239 ~~~~~~l~~~~~d~~i~iwd~~~~~ 263 (408)
+|++.++++- ..|.++++.+++..
T Consensus 366 Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 366 SPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred Ccccchheee-cCCceEEEEecCCC
Confidence 9999988875 35679999888743
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=2.8 Score=41.41 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=28.9
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK 71 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 71 (408)
|.......++|+|...++|.+..+|.|+++-...
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 4445677899999999999999999999998654
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.18 E-value=8.7 Score=37.22 Aligned_cols=173 Identities=11% Similarity=0.103 Sum_probs=99.3
Q ss_pred cccCceeEEEEc---C----CCCeEEEEeCCCcEEEEEcCCC---------------eeEEEecccccceeeEEEEEeCC
Q 015371 38 GMNSRVYTSQFS---N----DGSFFVAASQESNIKVYNVDKN---------------WKIQKDIETKALRWTITDTSLSP 95 (408)
Q Consensus 38 ~h~~~v~~~~~s---~----~~~~l~t~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~ 95 (408)
.-..+|..|+|+ . ..++|++=. ...+.|+...-. ..+..+........+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 224666554 446777772111 11111111111223678899999
Q ss_pred -CCceEEEeecCcEEEEEECCCCceeeeeeeeee--eeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 015371 96 -DQRFLVYASICAIVNIVDVGSSARESLANVTIH--KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA 172 (408)
Q Consensus 96 -~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 172 (408)
+.+.||+....|...||++..........+... ..-.. .........-..+.|.++.+.|++++. ..+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-IFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-cCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCC
Confidence 567899999999999999932211111111111 00001 011112245668899988888888864 6689999988
Q ss_pred Cccee-e-ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 173 NKCSL-R-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 173 ~~~~~-~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
..... . .......|..+.-+|.+..+++.-. ...|...++.
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 76533 1 2334567888888854344444433 2567777765
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.08 E-value=0.73 Score=24.75 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCcEEEEee-CCCeEEEEECCCCceeEEEccCCCCeeeeeE
Q 015371 322 TAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 322 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (408)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4566666655 5789999999999888887653 33334444
No 457
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.83 E-value=0.85 Score=39.23 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=94.6
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccce---eeEE-EEEeCCCCceEEEeecCcEEEE
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR---WTIT-DTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
+..-...|..+-..|||+.|..-+. .++.++++.+.............. ..|+ ++..-..|..|+++..||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3344567888899999999887765 579999987653222211111111 1222 2223345667888889998887
Q ss_pred E-ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 112 V-DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 112 w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
| |+............ ...+. ..++..+.-..+.+-+++-+..|++.++.....+.+.. ..--..+.-++
T Consensus 295 WFdvr~~~~p~l~h~R---~f~l~------pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~ 364 (733)
T COG4590 295 WFDVRRDGQPHLNHIR---NFKLA------PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVA 364 (733)
T ss_pred eeeeecCCCCcceeee---ccccC------cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceee
Confidence 7 44433322211111 11111 11344443333455677777888888887654443332 22233667788
Q ss_pred EecCCCCEEEEecCCCeEEEEecc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
++ |+++++++- ..|.++++.+.
T Consensus 365 ~S-p~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 365 MS-PNQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred eC-cccchheee-cCCceEEEEec
Confidence 88 777777653 45789998875
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.71 E-value=1.1 Score=33.94 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=25.5
Q ss_pred eEEEEEeCCCC------ceEEEeecCcEEEEEECCCC
Q 015371 87 TITDTSLSPDQ------RFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 87 ~v~~~~~~~~~------~~l~~~~~dg~i~~w~~~~~ 117 (408)
.|.+++|||.| ..|++.+.++.+.||.-...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 69999999954 47888899999999987643
No 459
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.28 E-value=7.2 Score=34.02 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=19.8
Q ss_pred CeEEEEECCCCcceeeecCc--CCCceEEEEecCCCCEEEEecC
Q 015371 163 NFIYVYDLQANKCSLRIPAH--KSDVNTVCFADETGHLIFSGSD 204 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~l~~~~~ 204 (408)
..+.+||..+.+-...-... ...-.++... ++++.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 35888998776543221111 1112233333 4566666664
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=8 Score=34.39 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceee-------------------EEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT-------------------ITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
+-++.+-.| .+..||-+..-.............. |..+..++.|..++.++.+|.+.++=
T Consensus 53 rN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 53 RNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred cchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEc
Q ss_pred ---------CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC---CEEEEEecCCeEEEEECCCCcceeeecC
Q 015371 114 ---------VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG---QELVAAGSDNFIYVYDLQANKCSLRIPA 181 (408)
Q Consensus 114 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 181 (408)
++.++.............-|... ..-.+..++|+|+. ..|..-+.|..|++||+.....+....+
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred hhhcCccceecCCCceEEEEeecccceeeccC---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Q ss_pred cCCC
Q 015371 182 HKSD 185 (408)
Q Consensus 182 ~~~~ 185 (408)
..+.
T Consensus 209 epgR 212 (741)
T KOG4460|consen 209 EPGR 212 (741)
T ss_pred CcCC
No 461
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.08 E-value=9.6 Score=34.98 Aligned_cols=158 Identities=5% Similarity=-0.035 Sum_probs=84.3
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccccc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 83 (408)
..+.+.|+||...+.-.........+.....+.-.-...++.-.|.++| .+.+.-.+...++.................
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~ 414 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWT 414 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecccc
Confidence 3567888998876654433333333333222221223357778888888 666665444455555433212222222222
Q ss_pred ceeeEEEEEeCCCCceEEEeec---CcEEEEEECCCC-c-eeee-eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 84 LRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSS-A-RESL-ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 84 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
....|..+..|+||..++.-.. .++|.+--+... . ...+ .... .. ..... .+.++.|..++...+
T Consensus 415 ~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~-----~l---~~~l~-~v~sl~W~~~~~laV 485 (557)
T PRK13615 415 ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPL-----EL---LASPG-TPLDATWVDELDVAT 485 (557)
T ss_pred CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccE-----Ec---ccCcC-cceeeEEcCCCEEEE
Confidence 3357999999999998876543 355665444331 1 1111 0100 00 00111 589999999988766
Q ss_pred EEe---cCCeEEEEECC
Q 015371 158 AAG---SDNFIYVYDLQ 171 (408)
Q Consensus 158 ~~~---~dg~i~i~d~~ 171 (408)
.+. .+..+++..+.
T Consensus 486 l~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 486 LTLAPDGERQVELHQVG 502 (557)
T ss_pred EeccCCCCceEEEEECC
Confidence 552 23456666665
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.04 E-value=1 Score=24.18 Aligned_cols=40 Identities=30% Similarity=0.323 Sum_probs=27.2
Q ss_pred CCCCEEEEEec-CCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 151 TDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 151 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
|++++|+++.. ++.|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 56777777654 78999999988887777764 233334443
No 463
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.79 E-value=6.4 Score=32.40 Aligned_cols=120 Identities=8% Similarity=0.076 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCc-----eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC--------
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSA-----RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-------- 153 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 153 (408)
.-..|+++|.+.+.++....+...+||..... ......++... ........+.+.|+...
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~-------~~~~~~~PTGiVfN~~~~F~vt~~g 96 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP-------PLAAEGTPTGQVFNGSDTFVVSGEG 96 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC-------CCCCCCCccEEEEeCCCceEEcCCC
Confidence 35678999999988888888999999987221 11111111000 00111235555555322
Q ss_pred ----CEEEEEecCCeEEEEECCCCcc-----eeeec-CcCCCc-eEEEEec-CCCCEEEEe-cCCCeEEEEec
Q 015371 154 ----QELVAAGSDNFIYVYDLQANKC-----SLRIP-AHKSDV-NTVCFAD-ETGHLIFSG-SDDSLCKVWDR 213 (408)
Q Consensus 154 ----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~~v-~~l~~~~-~~~~~l~~~-~~dg~i~iwd~ 213 (408)
..++.+++||+|.-|.-.-+.. ...+. .....| ..+++.. ..+++|+.+ -.+++|.+||-
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 2367788999999998533222 11221 112333 3455441 224444444 46789999994
No 464
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.47 E-value=1 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=21.1
Q ss_pred eecccCceeEEEEcCCCCeEEEEe-CC--CcEEEE
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAAS-QE--SNIKVY 67 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~-~d--g~i~iw 67 (408)
+....+.-....|||||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 444556778899999999888665 34 555555
No 465
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.22 E-value=13 Score=34.70 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=83.0
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC------CceEEEeec-C---cEE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD------QRFLVYASI-C---AIV 109 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-d---g~i 109 (408)
.+.|-.+.|.++++.+++.-.+|.|.+|+...+...........+...+.--+|-++ ..++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678999999999999999999999999999333111100111111111111133332 344544443 2 246
Q ss_pred EEEEC--CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeecCc---C
Q 015371 110 NIVDV--GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAH---K 183 (408)
Q Consensus 110 ~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~ 183 (408)
+++.+ +......+....... .......|.- +|. |..- .++.|.+|++.+-+...++.-. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~------------~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~ 274 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILEN------------FGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIID 274 (670)
T ss_pred EEEEeccCCcceEEeehheecc------------CCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhc
Confidence 77777 222221111000000 0122222322 454 3322 5789999999877665554311 1
Q ss_pred CC-ceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 184 SD-VNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 184 ~~-v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
.. -.-+.+.|+..+.++.+. +..|.+.|+.
T Consensus 275 ~~~~~~vSl~~~s~nRvLLs~-~nkIyLld~~ 305 (670)
T PF10395_consen 275 KESDDLVSLKPPSPNRVLLSV-NNKIYLLDLK 305 (670)
T ss_pred cccccceEeecCCCCeEEEEc-CCEEEEEeeh
Confidence 10 123344556666666654 5689999974
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.22 E-value=3.5 Score=31.18 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCC------eEEEeecCCeEEEEeCCC
Q 015371 231 EGITFIDSRRDGR------YFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 231 ~~i~~~~~~~~~~------~l~~~~~d~~i~iwd~~~ 261 (408)
..+..++|||.|- +|++...++.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999999542 688889999999998664
No 467
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.81 E-value=14 Score=34.44 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=98.7
Q ss_pred ceeEEEEcCCCCeEEEEeCCC-cEEEEEcCCCee----EEEecccccceeeEEEEEeCCCCceEEEeec--Cc--EEEEE
Q 015371 42 RVYTSQFSNDGSFFVAASQES-NIKVYNVDKNWK----IQKDIETKALRWTITDTSLSPDQRFLVYASI--CA--IVNIV 112 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg-~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg--~i~~w 112 (408)
.+.+++.|+++..+|..+.++ .+++..+..+.. ...... ...++.-.|.+++. +-+... ++ .+++.
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~----~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~ 438 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA----DGRLTSPSWDGRGD-LWVVDRDPADPRLLWLL 438 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec----cCcccCCcCcCCCC-EEEecCCCCCceEEEEE
Confidence 688999999999888776655 455554433322 111111 11466677877774 433321 22 25555
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECC---CCc-cee---eecCc
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQ---ANK-CSL---RIPAH 182 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~---~~~-~~~---~~~~~ 182 (408)
.- +++....... ......|..+..++||.+++.-.. .+.|++--+. .+. .+. .+...
T Consensus 439 ~~-~G~~~~V~~~------------~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~ 505 (599)
T PRK13613 439 QG-DGEPVEVRTP------------ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE 505 (599)
T ss_pred cC-CCcEEEeecc------------ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence 43 3332111110 000126999999999998876543 3556554432 232 111 11112
Q ss_pred CCCceEEEEecCCCCEEEEec-CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC-eEEEeecCCeE
Q 015371 183 KSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTT 254 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i 254 (408)
-..+.+++|. .+..+++.+. .++...+|-+.. .-..........-..+..++...+.+ .++.+..++.|
T Consensus 506 l~~v~~~~W~-~~~sL~Vlg~~~~~~~~v~~v~v--dG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 506 LEDVTDMSWA-GDSQLVVLGREEGGVQQARYVQV--DGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCccceeEEc-CCCEEEEEeccCCCCcceEEEec--CCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 3358999999 7777766553 333444554431 11111111222445566677766665 44442455554
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.77 E-value=2.3 Score=39.32 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCCCeEEEEeCCCcEEEEEcCC----CeeEEEeccc-------------------ccceeeEEEEEeCC----CCceEEE
Q 015371 50 NDGSFFVAASQESNIKVYNVDK----NWKIQKDIET-------------------KALRWTITDTSLSP----DQRFLVY 102 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~-------------------~~~~~~v~~~~~~~----~~~~l~~ 102 (408)
++...++.+..||.+....... +......... ......+.+++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667788888999988888765 1111111000 00123455566666 7789999
Q ss_pred eecCcEEEEEECCCCcee
Q 015371 103 ASICAIVNIVDVGSSARE 120 (408)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~ 120 (408)
.+.|+.+|+||+.+++..
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999998873
No 469
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.62 E-value=12 Score=33.33 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 355 APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999986
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.56 E-value=9.9 Score=32.32 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCcce---eeecCcCCC--ceEEEEecCCCCEEEEecC-----CCeEEEEecccc
Q 015371 152 DGQELVAAGSD-----NFIYVYDLQANKCS---LRIPAHKSD--VNTVCFADETGHLIFSGSD-----DSLCKVWDRRCF 216 (408)
Q Consensus 152 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~~~~~--v~~l~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 216 (408)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+ -.+++.. ++.+.+.|+. ...+..||+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~- 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLET- 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCC-
Confidence 45566666653 35777887665531 122111111 1223333 4666677664 23577788641
Q ss_pred ccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe----EEEEeCCC
Q 015371 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT----TKLWDIRK 261 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~----i~iwd~~~ 261 (408)
.....+..+... ..........++++.+.|+.++. +..||..+
T Consensus 149 -~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 149 -QEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred -CCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 122222211111 11112222335667777776532 34566554
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.17 E-value=11 Score=32.15 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=82.7
Q ss_pred eEEEEEeCCCCceEEEeecCcE------EEEEECCCCceeeeeeeeeeeeeeeecC-C---CCCccceEEEEEcCCCCEE
Q 015371 87 TITDTSLSPDQRFLVYASICAI------VNIVDVGSSARESLANVTIHKGLDFSAD-G---DEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~------i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l 156 (408)
.+..+.+.|++..+++.+.+|. +...++..... ....+.......+... + ........+|++.+++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 5788999876666666677776 55555543110 0011111100000000 0 0011135577887788777
Q ss_pred EEEecC------CeEEEEECCCCcceeeec---------------CcCCCceEEEEecCCCCEEEEecCC-----C----
Q 015371 157 VAAGSD------NFIYVYDLQANKCSLRIP---------------AHKSDVNTVCFADETGHLIFSGSDD-----S---- 206 (408)
Q Consensus 157 ~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~v~~l~~~~~~~~~l~~~~~d-----g---- 206 (408)
++.-.+ ..|+.++.. |+....+. .......+|+++ ++++.|+++.+. +
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCCcccc
Confidence 666556 678888876 55444331 134567899999 888866655432 2
Q ss_pred -----eEEEEeccccc---cCCccceeeec-----ccCCeEEEEecCCCCeEEE
Q 015371 207 -----LCKVWDRRCFI---SKGRANGVLMG-----HLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 207 -----~i~iwd~~~~~---~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~ 247 (408)
.++++...... ...+....+.. ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 15555443111 01111222222 3467888888888886554
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=7.3 Score=30.04 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCceEEEeec--CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE-EecCCeEEEEECCC
Q 015371 96 DQRFLVYASI--CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA-AGSDNFIYVYDLQA 172 (408)
Q Consensus 96 ~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~ 172 (408)
++.++.+.+. ...|++||+.+++......+.. ...|.. .++.+ +..+.. .-.+|.-..+|..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgE-------Git~~-----gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGE-------GITKL-----GDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--cccccc-------ceeec-----cceEEEEEeccceeEEEChHH
Confidence 4555665553 3479999999887654444331 111111 12211 222222 23478888999888
Q ss_pred CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 173 NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 173 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
-+.+..+. ..+.=..++. ++.-|+.++...+++.-|..
T Consensus 121 ~~~lg~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 121 LEELGRFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred hhhhcccc-cCCcceeeec---CCcceEeeCCceEEEecCHH
Confidence 88777665 2344455553 34445565556677777754
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.91 E-value=16 Score=34.58 Aligned_cols=93 Identities=11% Similarity=0.273 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCEEEEEecCC-----eEEEEECC---CCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccc
Q 015371 144 IFSVKFSTDGQELVAAGSDN-----FIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (408)
-..+.|-|+|..+++-..|| .|..+.-+ .|+.-... +....+..++|+ -....++. .....+++|-..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn-~~s~vlav-~~~n~~~lwttk- 324 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWN-LLSTVLAV-AEGNLLKLWTTK- 324 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-Cchhhhhhhhhh-HHHHHHHH-hhcceEEEEEcc-
Confidence 44589999999999876554 34444321 22221111 234456677776 44444433 445689999843
Q ss_pred cccCCccceeeecccCCeEEEEecCCCC
Q 015371 216 FISKGRANGVLMGHLEGITFIDSRRDGR 243 (408)
Q Consensus 216 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 243 (408)
.........-.-..+.-+.|+|...
T Consensus 325 ---NyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 325 ---NYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred ---ceEEEEEEeecCCCcceeeeccccC
Confidence 3332222233344566778888544
No 474
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.64 E-value=13 Score=32.17 Aligned_cols=199 Identities=14% Similarity=0.162 Sum_probs=102.0
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc-eeeEEEEEeCCCCce--EEEeec-C---cEEEEEECCC--Ccee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRF--LVYASI-C---AIVNIVDVGS--SARE 120 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~~-d---g~i~~w~~~~--~~~~ 120 (408)
|...+++....++-+.+||++.. .++........ -.-...+.+ +++. |++++. + ..|++|.+.. +...
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 34567777788888999999765 44333211110 011122233 3433 445543 2 4799998864 2221
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEE--cC-CCC-EEEEEecCCeEEEEECC---CC----cceeeecCcCCCceEE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKF--ST-DGQ-ELVAAGSDNFIYVYDLQ---AN----KCSLRIPAHKSDVNTV 189 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~l 189 (408)
.+..... .+.. ....+..+++ ++ +|. +.++...+|.+..|.+. .+ +.++.+.. ...+..+
T Consensus 143 ~v~~~~~----p~~~----~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGC 213 (381)
T PF02333_consen 143 DVTDPAA----PIAT----DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGC 213 (381)
T ss_dssp E-CBTTC-----EE-----SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEE
T ss_pred EcCCCCc----cccc----ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEE
Confidence 1111000 0000 0113566665 33 454 56667788988888774 23 34555553 4578888
Q ss_pred EEecCCCCEEEEecCCCeEEEEeccccccC-Cccceeee--cccCCeEEEEecC--CCC-eEEEee-cCCeEEEEeCCC
Q 015371 190 CFADETGHLIFSGSDDSLCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSRR--DGR-YFISNG-KDQTTKLWDIRK 261 (408)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~--~~~-~l~~~~-~d~~i~iwd~~~ 261 (408)
... .....|+.+-++.-|.-|+.+..... ...+.... .....|..|++-. +++ ||++++ .+++..+|+.+.
T Consensus 214 VVD-De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 214 VVD-DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEE-TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEe-cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888 66778889999987777776421111 12221221 2345677777643 333 555444 477899999775
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.52 E-value=5.9 Score=31.78 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=70.5
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-C--CeEEEEECCC--Cccee-----e
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D--NFIYVYDLQA--NKCSL-----R 178 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~--~~~~~-----~ 178 (408)
-.+||+.+.+...+.... .. -+..-.+.+||+.+.+|+. + ..+++++... +.+.. .
T Consensus 48 s~~yD~~tn~~rpl~v~t--d~------------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT--DT------------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND 113 (243)
T ss_pred EEEEecCCCcEEeccCCC--CC------------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc
Confidence 458999888765433211 11 2444567789999998876 2 3577777543 11110 1
Q ss_pred ecCcCCCceEEEEecCCCCEEEEecCCC-eEEEEeccccccCCccceeee-----cccCCeEEEEecCCCCeEEEeecCC
Q 015371 179 IPAHKSDVNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLM-----GHLEGITFIDSRRDGRYFISNGKDQ 252 (408)
Q Consensus 179 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~ 252 (408)
+. ....--+.... ++++.|+.|+.+. +..+|..+...........+. ....--..+...|+|++|+.+..+.
T Consensus 114 m~-~~RWYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s 191 (243)
T PF07250_consen 114 MQ-SGRWYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS 191 (243)
T ss_pred cc-CCCccccceEC-CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc
Confidence 11 11111222333 6888888888764 345555321100011111111 0112223566789999998887654
Q ss_pred eEEEEeCCCC
Q 015371 253 TTKLWDIRKM 262 (408)
Q Consensus 253 ~i~iwd~~~~ 262 (408)
.|||..+.
T Consensus 192 --~i~d~~~n 199 (243)
T PF07250_consen 192 --IIYDYKTN 199 (243)
T ss_pred --EEEeCCCC
Confidence 56677663
No 476
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=89.27 E-value=12 Score=31.43 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECC
Q 015371 96 DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQ 171 (408)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 171 (408)
++++|+.|+++|...+. +...... ....... .+|+++...+..+.|++-+ ....++.+++.
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~-~~kl~~~-------------~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGT-LEKLIGR-------------RSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCC-eEEecCc-------------CceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 34689999998855444 5432111 1111111 1588999988777666554 33459999984
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.23 E-value=20 Score=33.93 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=24.4
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEEC
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 114 (408)
...|.+.+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 346899999999998887777888888764
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.14 E-value=12 Score=31.01 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=55.6
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe------cCCeEEEEECCCCcceeee
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLRI 179 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~ 179 (408)
-..|++||..+.+-..... .. ...|.++.|..+.+.++.|. ....+..||..+.... .+
T Consensus 15 C~~lC~yd~~~~qW~~~g~--~i------------~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~ 79 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN--GI------------SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SL 79 (281)
T ss_pred CCEEEEEECCCCEeecCCC--Cc------------eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ec
Confidence 3468999987765432221 12 22699999997777666664 3457888998776532 23
Q ss_pred cC-----cCCCceEEEEecCCCCEEE-Eec-C--CCeEEEEe
Q 015371 180 PA-----HKSDVNTVCFADETGHLIF-SGS-D--DSLCKVWD 212 (408)
Q Consensus 180 ~~-----~~~~v~~l~~~~~~~~~l~-~~~-~--dg~i~iwd 212 (408)
.. -.++|+.+.+...+...+. .|. . +..|..||
T Consensus 80 ~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 80 GGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred CCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 22 2478888887644554344 433 2 33466776
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.10 E-value=6.3 Score=27.94 Aligned_cols=107 Identities=9% Similarity=0.102 Sum_probs=64.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCc--------ceeeecCcCCCceEEEEec----CCCCEEEEecCCCeEEEEecc
Q 015371 147 VKFSTDGQELVAAGSDNFIYVYDLQANK--------CSLRIPAHKSDVNTVCFAD----ETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 147 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~l~~~~----~~~~~l~~~~~dg~i~iwd~~ 214 (408)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ ...+.|+.|+.. .+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3566666678888889999999876432 223333 456788886553 235677777754 78899975
Q ss_pred ccccCCccceeeecccCCeEEEEecC----CCCeEEEeecCCeEEEEeCCC
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRR----DGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~iwd~~~ 261 (408)
....+ .++.-.+.+.++.+-. +..++++| .+..|.-||...
T Consensus 82 ----~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 82 ----NNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred ----cCchh-hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 22222 2233346777776632 23344444 466677777654
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=6.2 Score=39.22 Aligned_cols=155 Identities=10% Similarity=0.111 Sum_probs=90.1
Q ss_pred EEEeecCceEEEEEEecCceeeecccCceeEEEEc-C-------CCCeEEEEeCCCcEEEEEcCCCeeEEEe------cc
Q 015371 15 FSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFS-N-------DGSFFVAASQESNIKVYNVDKNWKIQKD------IE 80 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s-~-------~~~~l~t~~~dg~i~iw~~~~~~~~~~~------~~ 80 (408)
|+..+...++|++...+....+.+-...|..+..- | .=++|..-+.--.|.|+-+.-.+..... ..
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 56677888889998878878888888888887753 2 2233333333445777655322111111 11
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee-----eeeeee------eeeecCCCCCccceEEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN-----VTIHKG------LDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-----~~~~~~------~~~~~~~~~~~~~i~~~~~ 149 (408)
.......|+++....+|+.+++|- || .+|.+.-........ +...++ ..+......+..+|..+..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 111233689999888888777654 55 455442111100000 000000 0011111245568999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC
Q 015371 150 STDGQELVAAGSDNFIYVYDLQA 172 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~ 172 (408)
...-..+.+-+..|.|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 98888899999999999999976
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.57 E-value=14 Score=31.36 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=32.6
Q ss_pred CCCEEEEEec-----CCeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCCCe----EEEEecc
Q 015371 152 DGQELVAAGS-----DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSL----CKVWDRR 214 (408)
Q Consensus 152 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~----i~iwd~~ 214 (408)
+++..+.|+. ...+..||+.+.+-... +.. .......+.. .++++.+.|+.++. +..||+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEE-ECCEEEEEcCCCCccccceEEEecC
Confidence 5566666654 24688899877653321 221 1111222222 45677788876543 4577754
No 482
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.42 E-value=16 Score=31.86 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=26.0
Q ss_pred CCCEEEEEecC-----------CeEEEEECCCCcceeeecCcCCCc--eEEEEecCCCCEEEEecCC
Q 015371 152 DGQELVAAGSD-----------NFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIFSGSDD 205 (408)
Q Consensus 152 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~v--~~l~~~~~~~~~l~~~~~d 205 (408)
++...+.|+.. ..+..||..+.+-...-....... .+.... .++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 56666666543 247788887654332211001111 122221 356777777754
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.18 E-value=18 Score=32.16 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 231 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
..|..+...+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4488888988889999999999999999975
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.04 E-value=19 Score=32.15 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEE--ecc--cccceeeEEEEEeCCCC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK--DIE--TKALRWTITDTSLSPDQ 97 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~--~~~~~~~v~~~~~~~~~ 97 (408)
+...-..-+.|+|.|||++|++--..|.|++++..++..... +.. ..........|+++|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333456688999999998887765569999998654422111 110 11124568899999874
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.79 E-value=14 Score=30.47 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=63.5
Q ss_pred CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee------cCcEEEEEECCCCceeeeeeeeeeeeeeeec
Q 015371 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS------ICAIVNIVDVGSSARESLANVTIHKGLDFSA 135 (408)
Q Consensus 62 g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (408)
..|++||..+.+-.. ....-.+.|+++.|..+.+.++.|. ....+..||+.+........-..
T Consensus 16 ~~lC~yd~~~~qW~~---~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s-------- 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS---PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS-------- 84 (281)
T ss_pred CEEEEEECCCCEeec---CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence 459999987753222 1222556899999997777777664 34567888887765422222000
Q ss_pred CCCCCccceEEEEEcC-CCCEEE-EEe-c--CCeEEEEECCCCcceee-ecCcCCCceEEEEe
Q 015371 136 DGDEDEFGIFSVKFST-DGQELV-AAG-S--DNFIYVYDLQANKCSLR-IPAHKSDVNTVCFA 192 (408)
Q Consensus 136 ~~~~~~~~i~~~~~~~-~~~~l~-~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~ 192 (408)
..-..++..+.+.. |+..+. .|. . +..|..||=.+...+.. .......|..+.+.
T Consensus 85 --~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 --NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred --ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 00122577777643 443344 332 2 33466665443333332 22223456666655
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.78 E-value=3.2 Score=38.37 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=44.6
Q ss_pred CCCceEEEeecCcEEEEEECCCC---ceeeeeeeeeeeee--eeec-------CCCCCccceEEEEEcC----CCCEEEE
Q 015371 95 PDQRFLVYASICAIVNIVDVGSS---ARESLANVTIHKGL--DFSA-------DGDEDEFGIFSVKFST----DGQELVA 158 (408)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~--~~~~-------~~~~~~~~i~~~~~~~----~~~~l~~ 158 (408)
++...++++..||.+........ .............. .+.. ...........++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 46778888888998888776641 11111111110000 0000 0011122355555655 6778999
Q ss_pred EecCCeEEEEECCCCcceeee
Q 015371 159 AGSDNFIYVYDLQANKCSLRI 179 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~ 179 (408)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985543
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.66 E-value=8 Score=27.43 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=64.7
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEE-------EecccccceeeEEEEE---eCC--CCceEEEeecCcEEEEE
Q 015371 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ-------KDIETKALRWTITDTS---LSP--DQRFLVYASICAIVNIV 112 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~dg~i~~w 112 (408)
.-.|......|+.++.-|.|.|.+........ ..+.... .|++++ |.| +...|+.|+ ...+..|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~---~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ---EITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC---ceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 34566666678888888999999865432111 1222222 466665 432 345666665 5678899
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC----CCCEEEEEecCCeEEEEECCCCcceee
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST----DGQELVAAGSDNFIYVYDLQANKCSLR 178 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~ 178 (408)
|+........+.++ . .+.++.+-. +...+++|+ +-.|.-||.+..+...+
T Consensus 79 DV~~N~d~Fyke~~--D-------------Gvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 79 DVENNSDLFYKEVP--D-------------GVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EcccCchhhhhhCc--c-------------ceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 99877553333322 2 366666632 344455554 56677777665554433
No 488
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.63 E-value=1.9 Score=21.51 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=21.1
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 325 KYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
..+++++.+|.++.+|..+|+.+-++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999876543
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.61 E-value=2.8 Score=22.05 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=19.1
Q ss_pred cCCCCeeeeeEeCCCCeEEeec-CC--CcEEEE
Q 015371 352 FHNAPVRDCCWHPIYPMLISSS-WD--CNIVRW 381 (408)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~-~d--g~v~iw 381 (408)
.....-....|||||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455677889999999766544 44 565555
No 490
>PRK05560 DNA gyrase subunit A; Validated
Probab=87.43 E-value=30 Score=33.81 Aligned_cols=211 Identities=8% Similarity=0.023 Sum_probs=103.4
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEc---CCC------eeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEE
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNV---DKN------WKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVN 110 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~---~~~------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 110 (408)
.+..+........|+..+..|.+..... ... ..+.........+.-+.++.+.. +...++..+.+|.++
T Consensus 538 ~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiK 617 (805)
T PRK05560 538 FVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVK 617 (805)
T ss_pred eeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEE
Confidence 3444444445555666666777665543 221 11111122222233455555552 667888899999998
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC---------cceeeecC
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---------KCSLRIPA 181 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~ 181 (408)
--++..-...... ......+. . .+.+..+........++..+..|.+..+....- .....+..
T Consensus 618 Ri~l~~~~~~~r~---G~~~ikLk----e-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~ 689 (805)
T PRK05560 618 KTSLSEFSNIRSN---GIIAINLD----E-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE 689 (805)
T ss_pred EEEhHHhhhcccC---CceeeccC----C-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC
Confidence 8776533211100 00111110 0 113444444444456777777887777765321 11222222
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC-----ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEE
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-----RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL 256 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 256 (408)
...|.++...+++...++..+..|.++...+....... .....+....+.+..+........++..+.+|.+..
T Consensus 690 -~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 690 -GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred -CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 23344444332333467888888988888754322111 112222222344444433333444666677888777
Q ss_pred EeCCC
Q 015371 257 WDIRK 261 (408)
Q Consensus 257 wd~~~ 261 (408)
++...
T Consensus 769 f~~~e 773 (805)
T PRK05560 769 TRVSE 773 (805)
T ss_pred EEHHH
Confidence 77654
No 491
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=16 Score=30.03 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=100.3
Q ss_pred eEecCCccEEEeecCceE-EEEEEecCceeeecc--cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccccc
Q 015371 7 VNYSGRGRFSAADSCHVL-SRYLPVNGPWKVDGM--NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~-~~~~~~~~~~~l~~h--~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 83 (408)
+.++.+-.|.+..+.... .....+..|..+..- .+.-+++..+ |+++..+.-|.-+.+.|+.+.......-....
T Consensus 92 v~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 92 VRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 344555555555443332 223333333322211 1334455554 78888887566688889877543332222222
Q ss_pred ceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC
Q 015371 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 163 (408)
Q Consensus 84 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (408)
..+.-..++.| |++-..+..|+-+.+.|+..........-..... .+.++..+++--+++.. +.
T Consensus 170 ~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~------------g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 170 PGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP------------GTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred CCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC------------ceEEEEecCCeeEEEEc--cc
Confidence 22233445554 6677777788889999998765433222211111 47777777766555554 34
Q ss_pred eEEEEECCCCcceeeecC-cCCCceEE-EEecCCCCEEEEecCCCeEEEEecc
Q 015371 164 FIYVYDLQANKCSLRIPA-HKSDVNTV-CFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~-~~~~v~~l-~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
-+.+-|..+.+....+-. ....+.++ .+. -.+++......+.-+.+-|+.
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~-Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVP-VSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCccccccee-cccceeeeeccccCceeEecc
Confidence 477778766654444321 12222222 222 346666677667777777764
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.78 E-value=15 Score=29.57 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCC---CeEEEEeccccccCCcccee--eecccCCeEEEEec
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGV--LMGHLEGITFIDSR 239 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~--~~~~~~~i~~~~~~ 239 (408)
-.+||+.+++....-......+.+-.+. ++|+++.+|+.. ..+++++.-........... .......-.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4578888876433222223333444566 789999998752 35788874310001111110 01122333455567
Q ss_pred CCCCeEEEeecC
Q 015371 240 RDGRYFISNGKD 251 (408)
Q Consensus 240 ~~~~~l~~~~~d 251 (408)
|||+.|+.|+.+
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 799999998877
No 493
>PLN02193 nitrile-specifier protein
Probab=86.52 E-value=25 Score=31.90 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCeEEEEeCC-------CcEEEEEcCCCeeEEEecccccce-eeEEEEEeCCCCceEEEeecC-----cEEEEEECCCC
Q 015371 51 DGSFFVAASQE-------SNIKVYNVDKNWKIQKDIETKALR-WTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSS 117 (408)
Q Consensus 51 ~~~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~ 117 (408)
++.+++.|+.+ ..+.+||+.+..-........... .........-++...+.|+.+ ..+..+|+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Q ss_pred ceeeeeee---eeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe-----EEEEECCCCcceeeec---CcCCCc
Q 015371 118 ARESLANV---TIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF-----IYVYDLQANKCSLRIP---AHKSDV 186 (408)
Q Consensus 118 ~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~---~~~~~v 186 (408)
+-..+... +.. .-......-+++..+.|+.++. +..||+.+.+-...-. .....-
T Consensus 255 ~W~~l~~~~~~P~~--------------R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~ 320 (470)
T PLN02193 255 EWKLLTPVEEGPTP--------------RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRG 320 (470)
T ss_pred EEEEcCcCCCCCCC--------------ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCC
Q ss_pred eEEEEecCCCCEEEEecCC----CeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEeecCC---------
Q 015371 187 NTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQ--------- 252 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~--------- 252 (408)
...+.. .++++++.++.+ ..+.+||+. ......+... ..........+..-++++++.|+.+.
T Consensus 321 ~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 397 (470)
T PLN02193 321 GAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGP 397 (470)
T ss_pred CcEEEE-ECCcEEEEECCCCCccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCc
Q ss_pred -----eEEEEeCCC
Q 015371 253 -----TTKLWDIRK 261 (408)
Q Consensus 253 -----~i~iwd~~~ 261 (408)
.+.+||+.+
T Consensus 398 ~~~~ndv~~~D~~t 411 (470)
T PLN02193 398 GQLTDGTFALDTET 411 (470)
T ss_pred cceeccEEEEEcCc
No 494
>PRK13615 lipoprotein LpqB; Provisional
Probab=86.01 E-value=28 Score=32.09 Aligned_cols=150 Identities=11% Similarity=0.089 Sum_probs=84.3
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCC-Cceeee
Q 015371 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESL 122 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~ 122 (408)
.+++.++++..+|....++.++++..... ...... .. .++.-.|.+++ .+-+.-.+...++..... +.....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~~~-~~---~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD--AVLLDT-RP---GLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc--ceeecc-CC---ccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe
Confidence 78899999999888877887888865522 111111 11 36667788877 444444333344444322 221111
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECC--CCc--ce----eeecCcCCCceEEEE
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQ--ANK--CS----LRIPAHKSDVNTVCF 191 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~--~~----~~~~~~~~~v~~l~~ 191 (408)
..... ....|..+..|+||.+++.-.. .+.|++--+. .+. .+ ..+......+.++.|
T Consensus 410 -~v~~~-----------~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W 477 (557)
T PRK13615 410 -AVSWT-----------ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATW 477 (557)
T ss_pred -ecccc-----------CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEE
Confidence 11110 1236999999999998876543 3566664332 221 12 111112348899999
Q ss_pred ecCCCCEEEEec---CCCeEEEEec
Q 015371 192 ADETGHLIFSGS---DDSLCKVWDR 213 (408)
Q Consensus 192 ~~~~~~~l~~~~---~dg~i~iwd~ 213 (408)
. .+..+.+.+. .+..+++..+
T Consensus 478 ~-~~~~laVl~~~~~~~~~v~~v~v 501 (557)
T PRK13615 478 V-DELDVATLTLAPDGERQVELHQV 501 (557)
T ss_pred c-CCCEEEEEeccCCCCceEEEEEC
Confidence 9 6777655542 3345666665
No 495
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.75 E-value=22 Score=30.59 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=20.4
Q ss_pred CeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCC
Q 015371 163 NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD 205 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~d 205 (408)
..+.+||..+.+-... +......-.+++. .++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 4688899877643321 2110111123333 356777777653
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.73 E-value=16 Score=34.25 Aligned_cols=69 Identities=19% Similarity=0.091 Sum_probs=43.9
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEEC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 114 (408)
...++++.-+|.|+-++.+..||+|++|++...... ++..... +-..+.|...| |+++..|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~~~---p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEEAK---PKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhhcC---Cccceeeeccc--eEEEeccchhheeec
Confidence 456788888999999999999999999998654321 1111111 22334454333 555666666666654
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.68 E-value=36 Score=33.04 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=28.7
Q ss_pred cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCc
Q 015371 230 LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 230 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
...|.++....-+..++....||+|.++|-.+.+..
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~ 294 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKEL 294 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhh
Confidence 355777777777888999999999999998886443
No 498
>PLN02153 epithiospecifier protein
Probab=85.12 E-value=24 Score=30.36 Aligned_cols=66 Identities=5% Similarity=0.060 Sum_probs=32.5
Q ss_pred CCCeEEEEeCC-------CcEEEEEcCCCeeEEEecccc-ccee---eEEEEEeCCCCceEEEeecC-----cEEEEEEC
Q 015371 51 DGSFFVAASQE-------SNIKVYNVDKNWKIQKDIETK-ALRW---TITDTSLSPDQRFLVYASIC-----AIVNIVDV 114 (408)
Q Consensus 51 ~~~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~-~~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~ 114 (408)
++++++.|+.+ ..+.+||+.+..-. ...... .... ....+.+ +++.++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 25778887765322 111110 0000 1122222 46667777643 24677887
Q ss_pred CCCce
Q 015371 115 GSSAR 119 (408)
Q Consensus 115 ~~~~~ 119 (408)
.+.+-
T Consensus 109 ~t~~W 113 (341)
T PLN02153 109 VKNEW 113 (341)
T ss_pred CCCEE
Confidence 76543
No 499
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.01 E-value=39 Score=32.83 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=43.3
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEE----cc---------------CCCCeeeeeEeCCCCeEEeecCCCcEE
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGAQVAKL----DF---------------HNAPVRDCCWHPIYPMLISSSWDCNIV 379 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~---------------~~~~v~~~~~~~~~~~l~s~~~dg~v~ 379 (408)
.-+.+++..-.||+|.++|-.+.+.+... .. .-.++..++|||.+..++.-..+|.+.
T Consensus 269 ~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 269 ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 34678999999999999998887655444 11 011334578999999999999999966
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.94 E-value=3.5 Score=21.63 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.5
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 326 YIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
.+..++.+|.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668999999999999999888763
Done!