Query 015371
Match_columns 408
No_of_seqs 841 out of 1446
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 11:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 7.1E-53 2.4E-57 353.9 38.2 290 35-384 27-320 (321)
2 1vyh_C Platelet-activating fac 100.0 8.5E-53 2.9E-57 365.8 38.2 290 33-384 101-410 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 1.6E-51 5.5E-56 349.2 41.1 291 33-382 48-340 (340)
4 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.7E-52 2.6E-56 351.7 37.9 316 34-389 9-339 (345)
5 2pbi_B Guanine nucleotide-bind 100.0 6.2E-51 2.1E-55 347.1 40.5 294 32-382 56-354 (354)
6 3iz6_a 40S ribosomal protein R 100.0 3.1E-52 1.1E-56 359.0 32.3 308 33-387 59-377 (380)
7 4g56_B MGC81050 protein; prote 100.0 9.4E-52 3.2E-56 352.3 33.0 323 8-388 12-346 (357)
8 2ynn_A Coatomer subunit beta'; 100.0 5.6E-50 1.9E-54 334.3 39.4 293 31-385 4-302 (304)
9 4gqb_B Methylosome protein 50; 100.0 8.2E-51 2.8E-55 343.5 33.3 295 36-387 26-333 (344)
10 1nr0_A Actin interacting prote 100.0 1.3E-49 4.4E-54 363.3 40.7 337 4-384 150-610 (611)
11 4ery_A WD repeat-containing pr 100.0 1.1E-48 3.9E-53 328.4 41.9 292 34-384 17-311 (312)
12 1nr0_A Actin interacting prote 100.0 5.4E-49 1.9E-53 359.2 40.9 321 4-387 21-357 (611)
13 2ymu_A WD-40 repeat protein; u 100.0 1.5E-48 5E-53 355.8 43.5 310 5-382 266-577 (577)
14 3frx_A Guanine nucleotide-bind 100.0 1.6E-48 5.4E-53 327.7 40.1 292 34-386 11-318 (319)
15 1gxr_A ESG1, transducin-like e 100.0 1.3E-48 4.4E-53 332.2 38.2 320 4-384 12-336 (337)
16 2hes_X YDR267CP; beta-propelle 100.0 2E-48 6.8E-53 328.7 36.7 303 33-385 7-328 (330)
17 1erj_A Transcriptional repress 100.0 4.2E-48 1.4E-52 334.8 38.8 302 37-386 61-390 (393)
18 2xzm_R RACK1; ribosome, transl 100.0 6.4E-48 2.2E-52 327.7 38.6 293 32-386 13-341 (343)
19 2ymu_A WD-40 repeat protein; u 100.0 2.9E-47 9.9E-52 347.3 42.4 313 4-384 224-538 (577)
20 1r5m_A SIR4-interacting protei 100.0 1.8E-46 6.2E-51 329.2 39.2 331 4-385 48-425 (425)
21 4aow_A Guanine nucleotide-bind 100.0 7.7E-46 2.6E-50 315.4 41.4 294 34-387 32-339 (340)
22 2pm9_A Protein WEB1, protein t 100.0 4E-48 1.4E-52 338.8 27.9 328 4-386 15-415 (416)
23 4e54_B DNA damage-binding prot 100.0 1.8E-47 6E-52 335.6 30.7 304 35-388 114-433 (435)
24 3ow8_A WD repeat-containing pr 100.0 3.7E-46 1.3E-50 313.0 37.2 277 4-342 35-320 (321)
25 3ei3_B DNA damage-binding prot 100.0 2.1E-46 7.1E-51 324.0 36.5 309 34-385 67-382 (383)
26 1vyh_C Platelet-activating fac 100.0 7E-46 2.4E-50 322.4 36.9 278 4-342 111-410 (410)
27 4gqb_B Methylosome protein 50; 100.0 6.5E-46 2.2E-50 313.6 33.2 281 5-345 34-333 (344)
28 3zwl_B Eukaryotic translation 100.0 1.6E-44 5.4E-49 310.9 41.4 291 34-387 26-348 (369)
29 3gre_A Serine/threonine-protei 100.0 5.8E-47 2E-51 333.3 25.9 346 8-382 34-437 (437)
30 1sq9_A Antiviral protein SKI8; 100.0 4.3E-45 1.5E-49 317.5 33.9 293 34-386 10-396 (397)
31 3dm0_A Maltose-binding peripla 100.0 1.1E-44 3.7E-49 336.3 37.8 289 35-384 377-692 (694)
32 4g56_B MGC81050 protein; prote 100.0 7.8E-45 2.7E-49 309.7 33.9 283 4-346 45-346 (357)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-44 7.3E-49 306.0 35.8 302 4-350 19-342 (345)
34 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-44 4.2E-49 311.9 34.2 295 35-386 3-362 (372)
35 2ynn_A Coatomer subunit beta'; 100.0 2.8E-44 9.4E-49 299.9 35.1 252 81-388 9-262 (304)
36 1got_B GT-beta; complex (GTP-b 100.0 4E-44 1.4E-48 303.8 36.0 277 4-340 58-340 (340)
37 3odt_A Protein DOA1; ubiquitin 100.0 5.2E-44 1.8E-48 300.5 36.0 289 33-390 11-301 (313)
38 3k26_A Polycomb protein EED; W 100.0 9.4E-45 3.2E-49 311.9 31.6 302 36-384 14-365 (366)
39 3vl1_A 26S proteasome regulato 100.0 6.8E-44 2.3E-48 312.3 35.5 318 5-385 60-419 (420)
40 4a11_B DNA excision repair pro 100.0 2E-43 6.7E-48 308.3 38.2 315 25-390 28-370 (408)
41 3i2n_A WD repeat-containing pr 100.0 4.7E-44 1.6E-48 306.5 32.4 298 35-387 13-355 (357)
42 1erj_A Transcriptional repress 100.0 4.5E-43 1.5E-47 303.3 38.5 286 5-344 68-390 (393)
43 1pgu_A Actin interacting prote 100.0 4.3E-43 1.5E-47 322.3 40.4 361 4-387 21-574 (615)
44 2pm9_A Protein WEB1, protein t 100.0 1.5E-44 5E-49 316.2 28.9 297 39-391 11-343 (416)
45 3sfz_A APAF-1, apoptotic pepti 100.0 2E-43 6.9E-48 348.6 39.4 376 4-389 660-1162(1249)
46 4h5i_A Guanine nucleotide-exch 100.0 4.2E-44 1.4E-48 305.9 29.7 297 41-387 15-345 (365)
47 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-44 5.7E-49 319.5 27.9 294 35-386 202-518 (524)
48 2pbi_B Guanine nucleotide-bind 100.0 4.6E-43 1.6E-47 298.6 35.4 278 4-340 67-354 (354)
49 3dwl_C Actin-related protein 2 100.0 5E-45 1.7E-49 314.8 23.6 298 34-383 5-377 (377)
50 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-43 2.1E-47 345.3 41.6 357 5-388 619-1037(1249)
51 1r5m_A SIR4-interacting protei 100.0 5.8E-43 2E-47 306.9 36.0 290 36-387 41-363 (425)
52 4gga_A P55CDC, cell division c 100.0 2.5E-42 8.5E-47 301.6 39.2 286 42-388 107-398 (420)
53 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-42 4.6E-47 327.8 39.8 242 4-259 20-310 (902)
54 3frx_A Guanine nucleotide-bind 100.0 2.8E-42 9.7E-47 289.6 36.0 282 4-344 20-318 (319)
55 2oaj_A Protein SNI1; WD40 repe 100.0 5.4E-43 1.9E-47 330.5 35.1 371 4-383 101-659 (902)
56 1pgu_A Actin interacting prote 100.0 6.1E-42 2.1E-46 314.7 39.9 328 4-385 163-614 (615)
57 4ggc_A P55CDC, cell division c 100.0 1.1E-41 3.8E-46 286.9 38.1 301 26-387 7-317 (318)
58 3iz6_a 40S ribosomal protein R 100.0 3.2E-43 1.1E-47 302.8 29.2 288 4-345 69-377 (380)
59 2xzm_R RACK1; ribosome, transl 100.0 5E-42 1.7E-46 291.5 35.5 292 5-345 25-342 (343)
60 4aez_A CDC20, WD repeat-contai 100.0 3.4E-42 1.2E-46 299.0 34.7 289 38-390 89-385 (401)
61 1yfq_A Cell cycle arrest prote 100.0 3.9E-42 1.3E-46 292.8 31.1 299 36-383 7-322 (342)
62 1gxr_A ESG1, transducin-like e 100.0 1.2E-41 4.1E-46 289.2 33.9 291 38-388 7-299 (337)
63 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-42 1.5E-46 293.3 31.4 306 33-388 4-340 (351)
64 2hes_X YDR267CP; beta-propelle 100.0 1.7E-41 5.9E-46 286.3 34.2 286 5-343 18-328 (330)
65 3dw8_B Serine/threonine-protei 100.0 8.1E-42 2.8E-46 301.6 32.8 308 38-383 26-444 (447)
66 2pm7_B Protein transport prote 100.0 5.3E-42 1.8E-46 285.1 29.4 259 34-342 3-284 (297)
67 3vl1_A 26S proteasome regulato 100.0 1.8E-42 6.2E-47 303.3 28.0 284 41-388 57-368 (420)
68 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-41 9.1E-46 320.2 37.4 295 32-387 5-304 (814)
69 2pm7_B Protein transport prote 100.0 2.7E-41 9.2E-46 280.9 32.9 255 81-386 5-286 (297)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-40 6.8E-45 292.1 39.9 305 8-386 124-443 (445)
71 4ery_A WD repeat-containing pr 100.0 9.3E-41 3.2E-45 280.3 35.4 277 4-342 26-311 (312)
72 3v7d_B Cell division control p 100.0 4.4E-40 1.5E-44 291.8 38.4 319 9-383 128-461 (464)
73 3mkq_A Coatomer beta'-subunit; 100.0 4.7E-40 1.6E-44 311.6 40.9 321 4-385 16-386 (814)
74 3v7d_B Cell division control p 100.0 8.7E-40 3E-44 289.9 39.6 284 34-388 115-424 (464)
75 3mmy_A MRNA export factor; mRN 100.0 1.7E-40 5.8E-45 285.6 33.4 302 31-386 30-347 (368)
76 3bg1_A Protein SEC13 homolog; 100.0 1.7E-41 5.8E-46 284.5 26.0 259 34-342 7-292 (316)
77 1p22_A F-BOX/WD-repeat protein 100.0 4.7E-40 1.6E-44 288.7 34.9 277 38-390 131-419 (435)
78 3jrp_A Fusion protein of prote 100.0 8.3E-40 2.8E-44 282.5 34.3 263 33-343 4-287 (379)
79 3bg1_A Protein SEC13 homolog; 100.0 6.6E-41 2.3E-45 281.0 25.9 255 81-386 9-294 (316)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-38 3.7E-43 281.0 39.8 282 32-388 110-394 (445)
81 4aow_A Guanine nucleotide-bind 100.0 6.7E-39 2.3E-43 272.6 36.0 288 4-345 41-339 (340)
82 3dm0_A Maltose-binding peripla 100.0 4.6E-39 1.6E-43 298.5 37.8 296 5-342 386-692 (694)
83 1sq9_A Antiviral protein SKI8; 100.0 1.6E-39 5.3E-44 282.5 31.1 295 4-345 19-397 (397)
84 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-40 8.8E-45 285.3 25.7 291 5-374 19-350 (588)
85 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-39 8.1E-44 278.9 31.8 241 4-261 11-274 (372)
86 3zwl_B Eukaryotic translation 100.0 6.5E-39 2.2E-43 275.8 34.1 295 4-349 35-352 (369)
87 4h5i_A Guanine nucleotide-exch 100.0 1.3E-39 4.3E-44 278.2 27.8 282 4-344 17-344 (365)
88 3ei3_B DNA damage-binding prot 100.0 1.7E-38 5.7E-43 274.5 33.3 277 4-343 76-382 (383)
89 2j04_B YDR362CP, TAU91; beta p 100.0 6.2E-40 2.1E-44 290.3 24.8 268 38-386 131-429 (524)
90 3dwl_C Actin-related protein 2 100.0 2.3E-39 7.7E-44 279.5 26.9 240 4-261 14-281 (377)
91 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.5E-38 1.2E-42 277.9 34.8 310 40-386 4-392 (450)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 6.2E-39 2.1E-43 278.8 27.7 290 40-387 34-344 (402)
93 3i2n_A WD repeat-containing pr 100.0 4.9E-38 1.7E-42 269.1 31.4 304 4-346 21-356 (357)
94 3jrp_A Fusion protein of prote 100.0 3.7E-38 1.3E-42 272.2 30.3 255 80-385 6-287 (379)
95 3k26_A Polycomb protein EED; W 100.0 2.8E-38 9.6E-43 271.6 29.4 287 4-342 21-365 (366)
96 3gre_A Serine/threonine-protei 100.0 3E-39 1E-43 284.2 23.5 278 47-388 34-362 (437)
97 4gga_A P55CDC, cell division c 100.0 6.1E-37 2.1E-41 267.5 37.5 294 4-362 108-414 (420)
98 3jro_A Fusion protein of prote 100.0 1.2E-38 4.1E-43 297.1 28.3 262 34-343 3-285 (753)
99 2xyi_A Probable histone-bindin 100.0 7.7E-38 2.6E-42 273.9 31.5 253 81-385 124-410 (430)
100 4e54_B DNA damage-binding prot 100.0 2.3E-38 7.9E-43 277.7 28.3 283 4-347 122-434 (435)
101 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-37 9.6E-42 259.5 33.7 279 4-351 21-304 (313)
102 2j04_A TAU60, YPL007P, hypothe 100.0 6E-39 2E-43 276.9 23.0 265 38-384 13-296 (588)
103 4aez_A CDC20, WD repeat-contai 100.0 7.1E-37 2.4E-41 265.6 35.3 284 5-351 97-388 (401)
104 3dw8_B Serine/threonine-protei 100.0 1.5E-37 5.3E-42 274.3 31.5 248 4-264 31-376 (447)
105 3lrv_A PRE-mRNA-splicing facto 100.0 1E-37 3.4E-42 265.1 28.0 283 46-385 42-333 (343)
106 3vu4_A KMHSV2; beta-propeller 100.0 7E-37 2.4E-41 260.6 33.1 285 34-388 13-339 (355)
107 4a11_B DNA excision repair pro 100.0 1.3E-36 4.4E-41 265.1 34.8 316 4-385 46-405 (408)
108 4gq1_A NUP37; propeller, trans 100.0 1.1E-37 3.7E-42 269.3 24.3 265 91-385 95-389 (393)
109 3jro_A Fusion protein of prote 100.0 6.5E-37 2.2E-41 285.5 27.3 256 81-387 5-287 (753)
110 4ggc_A P55CDC, cell division c 100.0 1.2E-34 4E-39 244.0 37.2 276 5-345 29-317 (318)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-36 1.8E-40 260.4 29.1 288 4-346 37-345 (402)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-35 5.9E-40 259.7 32.3 293 7-363 137-433 (435)
113 1yfq_A Cell cycle arrest prote 100.0 2.1E-35 7.1E-40 251.3 31.7 272 4-340 14-321 (342)
114 3f3f_A Nucleoporin SEH1; struc 100.0 5E-35 1.7E-39 249.7 30.5 301 4-350 14-344 (351)
115 3bws_A Protein LP49; two-domai 100.0 5.8E-34 2E-38 250.3 38.0 283 40-385 122-432 (433)
116 2w18_A PALB2, fancn, partner a 100.0 1.3E-34 4.6E-39 234.7 29.6 281 42-384 41-356 (356)
117 2xyi_A Probable histone-bindin 100.0 5.6E-35 1.9E-39 255.7 28.2 275 34-344 122-411 (430)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.5E-33 1.9E-37 244.8 36.5 203 38-259 100-337 (450)
119 1l0q_A Surface layer protein; 100.0 1.3E-32 4.3E-37 238.5 37.4 267 53-387 3-277 (391)
120 3mmy_A MRNA export factor; mRN 100.0 1.2E-33 4E-38 242.9 30.4 275 4-342 42-345 (368)
121 1l0q_A Surface layer protein; 100.0 9.9E-32 3.4E-36 232.8 41.5 306 15-388 4-345 (391)
122 3vu4_A KMHSV2; beta-propeller 100.0 6E-33 2E-37 236.3 31.9 292 4-344 22-337 (355)
123 4gq1_A NUP37; propeller, trans 100.0 3.3E-33 1.1E-37 241.3 25.5 238 45-341 94-387 (393)
124 3lrv_A PRE-mRNA-splicing facto 100.0 2E-32 6.8E-37 232.5 28.0 265 9-341 44-331 (343)
125 3bws_A Protein LP49; two-domai 100.0 1.7E-30 5.8E-35 228.2 35.3 273 5-343 126-432 (433)
126 1nir_A Nitrite reductase; hemo 100.0 2E-29 6.9E-34 225.1 39.4 334 6-388 142-517 (543)
127 1nir_A Nitrite reductase; hemo 100.0 2.1E-29 7.3E-34 225.0 33.0 283 47-389 144-462 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.7E-30 1.3E-34 223.4 26.4 285 39-389 61-391 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.7E-29 5.7E-34 219.3 28.9 293 6-367 67-410 (415)
130 2w18_A PALB2, fancn, partner a 100.0 6.5E-30 2.2E-34 207.4 23.5 247 32-341 78-355 (356)
131 1k32_A Tricorn protease; prote 100.0 3.4E-28 1.1E-32 235.2 34.3 360 4-387 17-463 (1045)
132 2ecf_A Dipeptidyl peptidase IV 100.0 1E-28 3.5E-33 231.5 29.6 285 40-385 36-413 (741)
133 2ecf_A Dipeptidyl peptidase IV 100.0 1.7E-28 5.7E-33 230.0 30.3 329 4-386 39-460 (741)
134 1ri6_A Putative isomerase YBHE 100.0 6E-28 2.1E-32 205.3 28.2 281 54-384 7-307 (343)
135 1k32_A Tricorn protease; prote 100.0 2.4E-27 8.1E-32 229.3 35.0 343 6-387 249-639 (1045)
136 1xfd_A DIP, dipeptidyl aminope 100.0 5.6E-28 1.9E-32 225.9 26.7 323 4-372 19-427 (723)
137 1xfd_A DIP, dipeptidyl aminope 100.0 1.4E-28 4.9E-33 229.9 22.7 291 41-386 17-394 (723)
138 2ojh_A Uncharacterized protein 100.0 1.6E-27 5.4E-32 198.3 25.5 257 57-376 17-293 (297)
139 2z3z_A Dipeptidyl aminopeptida 100.0 4E-27 1.4E-31 219.5 30.9 325 6-387 30-437 (706)
140 3u4y_A Uncharacterized protein 100.0 2.7E-26 9.1E-31 194.1 33.3 281 46-386 3-305 (331)
141 3vgz_A Uncharacterized protein 100.0 4.6E-26 1.6E-30 194.4 35.0 281 38-375 38-334 (353)
142 2z3z_A Dipeptidyl aminopeptida 100.0 3.6E-26 1.2E-30 213.0 30.7 316 4-383 84-474 (706)
143 1ri6_A Putative isomerase YBHE 100.0 2.3E-25 8E-30 189.3 33.0 277 37-367 34-335 (343)
144 3hfq_A Uncharacterized protein 100.0 1E-25 3.5E-30 191.7 30.1 277 61-385 15-317 (347)
145 1pby_B Quinohemoprotein amine 100.0 8.4E-26 2.9E-30 191.5 28.1 275 53-388 2-313 (337)
146 3o4h_A Acylamino-acid-releasin 100.0 3.7E-26 1.3E-30 207.9 25.0 277 40-385 21-315 (582)
147 1z68_A Fibroblast activation p 99.9 1.3E-25 4.5E-30 209.6 23.9 326 4-387 18-445 (719)
148 2ojh_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 178.2 27.4 252 21-334 20-293 (297)
149 1jmx_B Amine dehydrogenase; ox 99.9 6E-24 2.1E-28 181.0 27.6 283 45-388 4-328 (349)
150 3scy_A Hypothetical bacterial 99.9 3.5E-23 1.2E-27 177.0 32.3 281 50-385 11-337 (361)
151 3pe7_A Oligogalacturonate lyas 99.9 3.4E-24 1.2E-28 185.3 25.8 292 34-385 24-382 (388)
152 3u4y_A Uncharacterized protein 99.9 7.2E-23 2.5E-27 173.0 32.2 281 8-345 4-306 (331)
153 1z68_A Fibroblast activation p 99.9 1.2E-24 3.9E-29 203.2 22.9 287 44-385 19-391 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 3.7E-23 1.3E-27 179.9 30.6 240 4-260 39-332 (434)
155 1pby_B Quinohemoprotein amine 99.9 3E-23 1E-27 175.8 28.8 248 42-355 35-322 (337)
156 3hfq_A Uncharacterized protein 99.9 7.4E-23 2.5E-27 174.0 29.7 266 37-347 36-323 (347)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 7.1E-23 2.4E-27 178.1 29.2 214 39-262 35-279 (434)
158 3vgz_A Uncharacterized protein 99.9 1.3E-22 4.3E-27 173.1 29.2 244 87-388 42-306 (353)
159 3scy_A Hypothetical bacterial 99.9 6E-22 2.1E-26 169.3 32.8 280 39-363 48-360 (361)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.4E-22 8.3E-27 171.7 28.9 288 54-386 4-342 (365)
161 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-21 5.8E-26 165.8 30.7 276 6-353 4-335 (349)
162 3o4h_A Acylamino-acid-releasin 99.9 4.9E-23 1.7E-27 187.4 21.9 232 85-383 21-274 (582)
163 4a5s_A Dipeptidyl peptidase 4 99.9 5.7E-21 1.9E-25 178.3 31.7 329 4-387 19-451 (740)
164 4a5s_A Dipeptidyl peptidase 4 99.9 3.4E-21 1.2E-25 179.8 27.0 294 40-384 16-397 (740)
165 3c5m_A Oligogalacturonate lyas 99.9 1.2E-21 4.1E-26 169.8 21.8 291 41-384 36-381 (396)
166 3azo_A Aminopeptidase; POP fam 99.9 1.8E-20 6.3E-25 173.3 29.9 321 4-383 26-409 (662)
167 2oiz_A Aromatic amine dehydrog 99.9 4.4E-20 1.5E-24 156.8 28.1 282 51-386 14-335 (361)
168 2oiz_A Aromatic amine dehydrog 99.9 9.6E-20 3.3E-24 154.8 28.1 269 35-367 46-360 (361)
169 3azo_A Aminopeptidase; POP fam 99.9 3.4E-20 1.2E-24 171.5 27.1 300 34-387 17-371 (662)
170 2gop_A Trilobed protease; beta 99.9 6.8E-19 2.3E-23 149.6 30.6 258 41-384 15-330 (347)
171 3pe7_A Oligogalacturonate lyas 99.9 1.5E-20 5.1E-25 162.4 20.5 231 7-261 41-329 (388)
172 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.6E-20 2.6E-24 156.3 23.6 243 4-261 42-341 (365)
173 3fvz_A Peptidyl-glycine alpha- 99.9 6.3E-19 2.2E-23 148.2 28.1 246 86-387 24-324 (329)
174 2dg1_A DRP35, lactonase; beta 99.9 6.8E-19 2.3E-23 148.6 28.2 276 41-375 6-300 (333)
175 1q7f_A NHL, brain tumor CG1071 99.8 1E-17 3.6E-22 138.1 31.9 245 85-386 29-281 (286)
176 1q7f_A NHL, brain tumor CG1071 99.8 9.3E-18 3.2E-22 138.4 31.3 247 37-345 26-282 (286)
177 3c5m_A Oligogalacturonate lyas 99.8 1.4E-19 4.7E-24 156.8 20.9 232 4-261 38-329 (396)
178 2xdw_A Prolyl endopeptidase; a 99.8 2.6E-17 8.8E-22 153.1 35.7 284 50-387 81-416 (710)
179 3fvz_A Peptidyl-glycine alpha- 99.8 1.2E-17 4E-22 140.4 27.4 255 40-343 23-322 (329)
180 1qks_A Cytochrome CD1 nitrite 99.8 1.3E-16 4.6E-21 142.1 35.4 278 50-386 165-478 (567)
181 2dg1_A DRP35, lactonase; beta 99.8 1.5E-17 5E-22 140.5 27.5 235 5-260 9-262 (333)
182 2bkl_A Prolyl endopeptidase; m 99.8 1.4E-17 4.7E-22 154.4 28.9 281 49-388 76-400 (695)
183 2xdw_A Prolyl endopeptidase; a 99.8 1.7E-17 6E-22 154.2 28.7 250 38-345 122-416 (710)
184 2bkl_A Prolyl endopeptidase; m 99.8 1.3E-17 4.3E-22 154.7 26.4 250 38-346 118-400 (695)
185 2z2n_A Virginiamycin B lyase; 99.8 3.1E-15 1E-19 124.2 38.0 283 36-386 10-296 (299)
186 1qks_A Cytochrome CD1 nitrite 99.8 5.1E-15 1.7E-19 132.0 39.2 329 11-388 165-541 (567)
187 3e5z_A Putative gluconolactona 99.8 2.7E-16 9.2E-21 130.3 29.1 248 34-347 21-290 (296)
188 2gop_A Trilobed protease; beta 99.8 2.6E-16 8.9E-21 133.6 27.1 182 41-261 59-291 (347)
189 3e5z_A Putative gluconolactona 99.8 6.6E-16 2.3E-20 127.9 28.4 235 87-385 29-286 (296)
190 1rwi_B Serine/threonine-protei 99.8 2.8E-16 9.4E-21 128.4 25.1 242 87-388 25-267 (270)
191 2mad_H Methylamine dehydrogena 99.8 7.7E-15 2.6E-19 124.6 34.2 288 47-389 27-354 (373)
192 2qc5_A Streptogramin B lactona 99.8 2.1E-14 7E-19 119.2 36.0 280 38-384 17-299 (300)
193 1yr2_A Prolyl oligopeptidase; 99.8 7.7E-16 2.6E-20 143.8 29.6 278 49-387 115-443 (741)
194 1rwi_B Serine/threonine-protei 99.8 5.6E-16 1.9E-20 126.6 25.0 242 42-346 25-267 (270)
195 3no2_A Uncharacterized protein 99.8 2E-15 6.8E-20 122.8 27.5 185 51-261 4-195 (276)
196 3no2_A Uncharacterized protein 99.8 1.1E-15 3.8E-20 124.3 26.0 213 96-372 4-230 (276)
197 1yr2_A Prolyl oligopeptidase; 99.7 1.6E-15 5.5E-20 141.6 27.9 203 38-260 160-392 (741)
198 3dsm_A Uncharacterized protein 99.7 5.2E-15 1.8E-19 124.1 28.2 260 60-384 15-301 (328)
199 3sjl_D Methylamine dehydrogena 99.7 2.6E-15 9E-20 125.5 26.0 294 45-388 37-366 (386)
200 3dsm_A Uncharacterized protein 99.7 2.5E-14 8.6E-19 119.9 30.3 258 41-362 44-319 (328)
201 2z2n_A Virginiamycin B lyase; 99.7 2.3E-13 7.9E-18 112.8 35.5 233 4-260 17-254 (299)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.4E-14 8.2E-19 119.7 29.1 248 87-387 19-301 (314)
203 3c75_H MADH, methylamine dehyd 99.7 1.7E-14 5.7E-19 123.0 25.4 289 50-388 82-405 (426)
204 3sjl_D Methylamine dehydrogena 99.7 1.5E-13 5.2E-18 114.9 30.7 294 8-365 39-384 (386)
205 3hrp_A Uncharacterized protein 99.7 2.9E-13 9.8E-18 116.7 28.3 199 41-261 131-354 (409)
206 2qc5_A Streptogramin B lactona 99.7 3.6E-12 1.2E-16 105.6 33.9 234 3-260 21-259 (300)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 5.6E-13 1.9E-17 111.3 29.2 235 3-261 19-299 (314)
208 3hrp_A Uncharacterized protein 99.6 2.8E-13 9.5E-18 116.8 27.4 240 87-384 132-409 (409)
209 2mad_H Methylamine dehydrogena 99.6 4.5E-12 1.6E-16 107.6 33.8 243 45-350 70-357 (373)
210 3iuj_A Prolyl endopeptidase; h 99.6 1.2E-13 4E-18 127.9 25.7 205 38-261 126-359 (693)
211 3g4e_A Regucalcin; six bladed 99.6 1.1E-12 3.8E-17 108.4 27.0 227 88-372 15-259 (297)
212 2qe8_A Uncharacterized protein 99.6 3.2E-13 1.1E-17 114.0 23.7 283 41-381 17-317 (343)
213 1xip_A Nucleoporin NUP159; bet 99.6 3.4E-14 1.2E-18 119.4 16.3 174 42-248 39-231 (388)
214 1xip_A Nucleoporin NUP159; bet 99.6 2.3E-13 7.8E-18 114.4 19.2 167 4-201 40-230 (388)
215 3dr2_A Exported gluconolactona 99.6 3.2E-12 1.1E-16 106.1 24.8 226 5-258 48-303 (305)
216 3g4e_A Regucalcin; six bladed 99.6 2.6E-11 9E-16 100.1 29.6 225 4-250 15-261 (297)
217 3iuj_A Prolyl endopeptidase; h 99.6 1.8E-12 6.3E-17 119.9 25.0 242 84-387 127-407 (693)
218 3c75_H MADH, methylamine dehyd 99.5 2.1E-11 7.3E-16 104.0 28.8 244 45-350 122-409 (426)
219 3dr2_A Exported gluconolactona 99.5 1.4E-11 4.6E-16 102.3 26.7 207 32-261 36-267 (305)
220 2ghs_A AGR_C_1268P; regucalcin 99.5 7E-11 2.4E-15 98.9 30.4 221 5-251 52-292 (326)
221 1mda_H Methylamine dehydrogena 99.5 1.2E-12 4.1E-17 109.8 19.4 269 63-388 47-349 (368)
222 2ghs_A AGR_C_1268P; regucalcin 99.5 4.6E-11 1.6E-15 99.9 29.1 225 88-372 51-289 (326)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.5 4.4E-10 1.5E-14 96.3 30.7 268 51-388 52-340 (376)
224 1kb0_A Quinohemoprotein alcoho 99.5 4.8E-11 1.7E-15 109.5 26.0 309 52-389 77-511 (677)
225 1yiq_A Quinohemoprotein alcoho 99.4 3.4E-11 1.2E-15 110.7 24.4 312 52-389 70-509 (689)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.8E-09 1.6E-13 89.8 35.7 262 51-382 102-375 (376)
227 1yiq_A Quinohemoprotein alcoho 99.4 1.5E-10 5.1E-15 106.5 27.1 322 51-387 120-571 (689)
228 2hz6_A Endoplasmic reticulum t 99.4 8.1E-13 2.8E-17 112.4 9.9 203 96-367 8-216 (369)
229 3hxj_A Pyrrolo-quinoline quino 99.4 4.5E-11 1.5E-15 100.5 20.5 269 39-387 58-326 (330)
230 2qe8_A Uncharacterized protein 99.4 2.5E-11 8.5E-16 102.4 17.7 233 87-385 18-278 (343)
231 1kb0_A Quinohemoprotein alcoho 99.4 4.7E-10 1.6E-14 103.0 27.0 320 51-385 127-567 (677)
232 1fwx_A Nitrous oxide reductase 99.4 2.8E-10 9.6E-15 99.5 23.4 245 95-386 99-432 (595)
233 2hz6_A Endoplasmic reticulum t 99.4 3.9E-13 1.3E-17 114.4 4.7 183 152-388 8-195 (369)
234 1mda_H Methylamine dehydrogena 99.4 5.3E-11 1.8E-15 99.9 17.5 249 45-364 69-366 (368)
235 2ece_A 462AA long hypothetical 99.3 8.7E-09 3E-13 87.0 30.0 247 95-373 93-399 (462)
236 2ece_A 462AA long hypothetical 99.3 2.4E-09 8.3E-14 90.4 23.9 200 47-261 88-352 (462)
237 3hxj_A Pyrrolo-quinoline quino 99.3 5.9E-10 2E-14 93.6 20.2 261 43-383 22-282 (330)
238 1npe_A Nidogen, entactin; glyc 99.3 5.4E-08 1.8E-12 78.9 30.2 251 53-367 2-263 (267)
239 4a2l_A BT_4663, two-component 99.2 4.4E-07 1.5E-11 85.6 39.1 325 5-386 176-527 (795)
240 4a2l_A BT_4663, two-component 99.2 5.1E-07 1.7E-11 85.2 37.9 285 40-385 262-571 (795)
241 1kv9_A Type II quinohemoprotei 99.2 7.2E-09 2.5E-13 95.1 24.2 310 52-388 66-491 (668)
242 2iwa_A Glutamine cyclotransfer 99.2 2.1E-08 7.1E-13 79.6 22.1 200 144-387 23-239 (266)
243 2fp8_A Strictosidine synthase; 99.2 7.1E-08 2.4E-12 80.5 26.2 208 36-260 14-268 (322)
244 1w6s_A Methanol dehydrogenase 99.1 8.5E-08 2.9E-12 86.1 27.8 198 52-266 62-347 (599)
245 2ad6_A Methanol dehydrogenase 99.1 5E-08 1.7E-12 87.7 26.3 307 52-389 62-498 (571)
246 1kv9_A Type II quinohemoprotei 99.1 6.3E-08 2.2E-12 88.9 27.4 165 52-223 117-337 (668)
247 1fwx_A Nitrous oxide reductase 99.1 9.9E-08 3.4E-12 83.7 26.0 198 45-261 89-361 (595)
248 2fp8_A Strictosidine synthase; 99.1 8.5E-08 2.9E-12 80.0 23.8 250 88-386 21-314 (322)
249 2iwa_A Glutamine cyclotransfer 99.1 2.1E-07 7E-12 73.9 24.4 194 42-261 22-237 (266)
250 3qqz_A Putative uncharacterize 99.1 1E-06 3.4E-11 69.5 28.1 209 35-258 21-250 (255)
251 1k3i_A Galactose oxidase precu 99.1 1.7E-08 5.9E-13 92.8 20.8 118 45-175 190-326 (656)
252 1npe_A Nidogen, entactin; glyc 99.1 1.3E-06 4.6E-11 70.6 29.6 197 41-261 36-238 (267)
253 3v9f_A Two-component system se 99.0 3.2E-06 1.1E-10 79.6 34.7 292 40-386 257-569 (781)
254 3v9f_A Two-component system se 99.0 7.8E-06 2.7E-10 77.0 36.0 282 40-384 312-610 (781)
255 3nol_A Glutamine cyclotransfer 99.0 1.7E-07 5.7E-12 73.4 19.8 181 43-251 45-245 (262)
256 1w6s_A Methanol dehydrogenase 99.0 2.8E-06 9.5E-11 76.4 30.3 167 46-214 111-341 (599)
257 3nol_A Glutamine cyclotransfer 99.0 2.9E-07 1E-11 72.0 20.4 183 144-373 45-243 (262)
258 1flg_A Protein (quinoprotein e 98.9 1.7E-06 5.7E-11 78.0 27.4 198 53-265 69-359 (582)
259 3v64_C Agrin; beta propeller, 98.9 1.1E-05 3.9E-10 67.7 30.3 197 40-261 33-234 (349)
260 2p4o_A Hypothetical protein; p 98.9 4.1E-06 1.4E-10 69.2 27.3 234 4-252 34-279 (306)
261 3nok_A Glutaminyl cyclase; bet 98.9 2.4E-07 8.2E-12 72.5 18.3 180 42-250 56-254 (268)
262 2p4o_A Hypothetical protein; p 98.9 5.3E-06 1.8E-10 68.5 27.6 197 41-260 32-241 (306)
263 3nok_A Glutaminyl cyclase; bet 98.9 4.5E-07 1.5E-11 71.0 19.2 181 144-372 57-253 (268)
264 1flg_A Protein (quinoprotein e 98.9 4.8E-06 1.7E-10 75.0 28.1 161 52-214 117-354 (582)
265 2ad6_A Methanol dehydrogenase 98.9 1.4E-06 4.8E-11 78.4 24.4 303 52-370 115-522 (571)
266 3tc9_A Hypothetical hydrolase; 98.9 3.3E-06 1.1E-10 73.1 25.6 154 42-214 138-300 (430)
267 2xe4_A Oligopeptidase B; hydro 98.8 8.2E-07 2.8E-11 82.9 22.8 196 42-259 175-398 (751)
268 2xe4_A Oligopeptidase B; hydro 98.8 1.3E-06 4.3E-11 81.6 23.8 193 5-212 177-395 (751)
269 3mbr_X Glutamine cyclotransfer 98.8 6E-06 2.1E-10 64.1 23.2 183 41-250 21-223 (243)
270 3v65_B Low-density lipoprotein 98.8 2.5E-05 8.6E-10 66.7 29.5 195 42-261 78-277 (386)
271 3v64_C Agrin; beta propeller, 98.8 1.8E-05 6.2E-10 66.5 27.5 200 40-261 72-275 (349)
272 3mbr_X Glutamine cyclotransfer 98.8 5.6E-06 1.9E-10 64.3 22.2 185 143-373 22-222 (243)
273 3v65_B Low-density lipoprotein 98.8 1.2E-05 4.2E-10 68.6 26.8 202 38-261 113-318 (386)
274 3tc9_A Hypothetical hydrolase; 98.8 6.1E-06 2.1E-10 71.5 25.0 154 87-261 138-301 (430)
275 2xbg_A YCF48-like protein; pho 98.8 5.5E-05 1.9E-09 63.0 33.0 278 40-383 35-320 (327)
276 4hw6_A Hypothetical protein, I 98.7 2.7E-05 9.1E-10 67.5 26.3 197 41-259 139-372 (433)
277 3qqz_A Putative uncharacterize 98.7 5.4E-05 1.9E-09 59.7 25.5 161 85-261 26-204 (255)
278 4hw6_A Hypothetical protein, I 98.7 1.9E-05 6.5E-10 68.4 25.0 235 3-260 140-432 (433)
279 3p5b_L Low density lipoprotein 98.7 0.00012 4E-09 62.8 30.7 205 35-261 106-320 (400)
280 1ijq_A LDL receptor, low-densi 98.7 9.9E-05 3.4E-09 61.1 28.9 201 39-262 28-239 (316)
281 3kya_A Putative phosphatase; s 98.7 4.1E-05 1.4E-09 66.5 25.9 159 42-214 140-340 (496)
282 1k3i_A Galactose oxidase precu 98.7 3.1E-06 1.1E-10 77.9 20.3 113 90-214 190-322 (656)
283 1ijq_A LDL receptor, low-densi 98.5 0.00023 7.9E-09 58.9 33.0 184 54-261 3-195 (316)
284 3p5b_L Low density lipoprotein 98.5 0.00033 1.1E-08 60.1 32.6 187 53-261 84-277 (400)
285 3sov_A LRP-6, low-density lipo 98.5 0.00031 1.1E-08 58.0 29.4 187 54-261 6-197 (318)
286 3kya_A Putative phosphatase; s 98.5 0.00049 1.7E-08 59.9 28.0 162 87-260 140-340 (496)
287 2xzh_A Clathrin heavy chain 1; 98.5 0.00028 9.6E-09 56.8 29.4 267 61-387 48-334 (365)
288 3m0c_C LDL receptor, low-densi 98.5 0.0009 3.1E-08 62.3 31.8 186 54-261 397-589 (791)
289 3sov_A LRP-6, low-density lipo 98.5 0.00039 1.3E-08 57.4 29.0 230 99-388 6-241 (318)
290 2p9w_A MAL S 1 allergenic prot 98.4 0.0004 1.4E-08 56.5 24.3 178 34-214 6-214 (334)
291 3m0c_C LDL receptor, low-densi 98.4 0.00098 3.3E-08 62.1 30.0 207 35-263 418-634 (791)
292 3a9g_A Putative uncharacterize 98.3 0.00053 1.8E-08 57.6 24.0 224 3-249 30-330 (354)
293 1n7d_A LDL receptor, low-densi 98.3 1.6E-05 5.3E-10 73.4 15.7 178 61-261 385-571 (699)
294 1bpo_A Protein (clathrin); cla 98.3 0.001 3.5E-08 55.9 30.8 267 61-387 47-333 (494)
295 3amr_A 3-phytase; beta-propell 98.3 0.00055 1.9E-08 56.2 21.7 193 152-384 39-262 (355)
296 2xbg_A YCF48-like protein; pho 98.3 0.0013 4.3E-08 54.7 29.8 224 4-254 38-272 (327)
297 3s94_A LRP-6, low-density lipo 98.3 0.0026 8.8E-08 57.8 39.0 192 4-214 42-242 (619)
298 2p9w_A MAL S 1 allergenic prot 98.2 0.00086 2.9E-08 54.6 21.5 161 88-261 15-215 (334)
299 2ism_A Putative oxidoreductase 98.2 0.0012 4.2E-08 55.4 23.1 237 3-249 32-333 (352)
300 3s94_A LRP-6, low-density lipo 98.2 0.0038 1.3E-07 56.7 35.2 205 39-264 38-246 (619)
301 2vpj_A Kelch-like protein 12; 98.1 0.0014 4.9E-08 53.7 22.4 145 96-261 14-184 (301)
302 3amr_A 3-phytase; beta-propell 98.1 0.0022 7.6E-08 52.7 22.3 192 51-260 39-262 (355)
303 1n7d_A LDL receptor, low-densi 98.1 2.2E-05 7.7E-10 72.4 11.5 200 41-262 406-615 (699)
304 2ism_A Putative oxidoreductase 98.0 0.0046 1.6E-07 51.9 25.4 104 87-203 32-153 (352)
305 2vpj_A Kelch-like protein 12; 98.0 0.0026 9E-08 52.1 21.6 188 51-261 14-231 (301)
306 2xn4_A Kelch-like protein 2; s 98.0 0.0046 1.6E-07 50.7 23.1 64 323-386 204-277 (302)
307 4a0p_A LRP6, LRP-6, low-densit 97.9 0.012 4.2E-07 53.5 32.1 228 99-388 8-240 (628)
308 2xn4_A Kelch-like protein 2; s 97.9 0.0063 2.2E-07 49.9 24.0 187 52-261 16-229 (302)
309 1zgk_A Kelch-like ECH-associat 97.9 0.0066 2.2E-07 49.9 22.0 145 96-261 24-193 (308)
310 3ei3_A DNA damage-binding prot 97.9 0.024 8.1E-07 55.5 40.5 193 40-251 553-757 (1158)
311 3ii7_A Kelch-like protein 7; p 97.8 0.0084 2.9E-07 49.2 22.8 101 98-214 13-126 (306)
312 1xi4_A Clathrin heavy chain; a 97.8 0.0034 1.2E-07 61.1 20.5 269 61-388 47-334 (1630)
313 1zgk_A Kelch-like ECH-associat 97.8 0.0097 3.3E-07 48.9 24.0 187 51-261 24-240 (308)
314 3pbp_A Nucleoporin NUP82; beta 97.7 0.0061 2.1E-07 51.3 18.3 158 48-211 28-208 (452)
315 3sre_A PON1, serum paraoxonase 97.7 0.015 5.3E-07 48.3 21.1 206 34-258 43-295 (355)
316 3a9g_A Putative uncharacterize 97.6 0.02 6.8E-07 48.0 28.0 212 40-261 28-296 (354)
317 4asc_A Kelch repeat and BTB do 97.6 0.018 6.3E-07 47.4 23.8 184 54-261 7-221 (315)
318 3pbp_A Nucleoporin NUP82; beta 97.6 0.0079 2.7E-07 50.6 17.8 123 42-169 67-209 (452)
319 4asc_A Kelch repeat and BTB do 97.6 0.019 6.5E-07 47.3 21.7 140 100-261 8-174 (315)
320 3sre_A PON1, serum paraoxonase 97.6 0.02 6.8E-07 47.7 20.3 189 143-375 51-287 (355)
321 3ii7_A Kelch-like protein 7; p 97.6 0.022 7.5E-07 46.7 27.6 186 53-261 13-225 (306)
322 4a0p_A LRP6, LRP-6, low-densit 97.6 0.044 1.5E-06 49.9 42.6 198 41-262 37-238 (628)
323 1bpo_A Protein (clathrin); cla 97.5 0.036 1.2E-06 46.9 28.4 220 106-388 47-292 (494)
324 2uvk_A YJHT; unknown function, 97.5 0.034 1.2E-06 46.7 20.7 69 51-121 19-100 (357)
325 3das_A Putative oxidoreductase 97.5 0.033 1.1E-06 46.2 25.1 236 3-249 33-326 (347)
326 2g8s_A Glucose/sorbosone dehyd 97.5 0.037 1.3E-06 46.4 23.9 231 3-254 19-347 (353)
327 3sbq_A Nitrous-oxide reductase 97.5 0.033 1.1E-06 48.7 19.6 94 55-161 73-196 (638)
328 2xzh_A Clathrin heavy chain 1; 97.4 0.04 1.4E-06 44.7 27.9 201 45-262 71-291 (365)
329 2g8s_A Glucose/sorbosone dehyd 97.4 0.049 1.7E-06 45.7 26.8 59 323-383 288-350 (353)
330 2woz_A Kelch repeat and BTB do 97.2 0.071 2.4E-06 43.9 22.2 183 54-261 18-231 (318)
331 2uvk_A YJHT; unknown function, 97.1 0.1 3.4E-06 43.8 19.4 52 335-388 286-345 (357)
332 1tl2_A L10, protein (tachylect 97.1 0.031 1E-06 42.5 13.6 151 41-208 41-203 (236)
333 2be1_A Serine/threonine-protei 97.0 0.1 3.4E-06 43.1 18.4 194 53-264 11-234 (339)
334 2be1_A Serine/threonine-protei 96.9 0.024 8.3E-07 46.7 13.4 114 97-227 10-138 (339)
335 3s25_A Hypothetical 7-bladed b 96.9 0.13 4.4E-06 41.9 24.6 173 48-261 21-216 (302)
336 3s25_A Hypothetical 7-bladed b 96.9 0.14 4.6E-06 41.8 20.3 136 94-261 22-176 (302)
337 1xi4_A Clathrin heavy chain; a 96.8 0.13 4.5E-06 50.6 19.1 220 106-388 47-292 (1630)
338 1tl2_A L10, protein (tachylect 96.8 0.11 3.6E-06 39.6 16.5 150 87-254 42-203 (236)
339 2zwa_A Leucine carboxyl methyl 96.8 0.28 9.5E-06 45.4 20.4 199 50-261 396-635 (695)
340 3ei3_A DNA damage-binding prot 96.7 0.53 1.8E-05 46.3 39.8 114 42-171 515-635 (1158)
341 1cru_A Protein (soluble quinop 96.7 0.29 9.8E-06 42.6 25.4 102 3-104 28-162 (454)
342 2zwa_A Leucine carboxyl methyl 96.5 0.4 1.4E-05 44.4 19.8 155 95-261 396-577 (695)
343 2woz_A Kelch repeat and BTB do 96.1 0.48 1.6E-05 38.9 24.1 149 47-214 52-230 (318)
344 3ott_A Two-component system se 95.9 1.2 4E-05 41.8 38.4 196 42-261 192-401 (758)
345 1cru_A Protein (soluble quinop 95.9 0.8 2.7E-05 39.8 32.4 114 40-160 26-162 (454)
346 2wg3_C Hedgehog-interacting pr 94.3 2.5 8.5E-05 36.8 24.6 102 3-106 15-159 (463)
347 3das_A Putative oxidoreductase 93.3 3 0.0001 34.5 31.2 254 87-373 33-326 (347)
348 3qhy_B Beta-lactamase inhibito 92.9 3 0.0001 33.5 20.3 184 41-261 63-246 (282)
349 3sbq_A Nitrous-oxide reductase 91.8 1.1 3.6E-05 39.6 9.2 83 87-172 324-408 (638)
350 3uc1_A DNA gyrase subunit A; D 91.7 4.8 0.00016 33.1 24.2 210 41-261 42-279 (327)
351 3ott_A Two-component system se 91.2 9.9 0.00034 35.6 40.8 283 41-384 146-447 (758)
352 3qhy_B Beta-lactamase inhibito 90.3 6 0.00021 31.7 21.8 144 87-261 25-168 (282)
353 3b7f_A Glycosyl hydrolase, BNR 89.0 9.5 0.00033 32.2 28.5 108 143-257 116-258 (394)
354 4gq2_M Nucleoporin NUP120; bet 88.9 13 0.00045 35.9 15.0 73 142-214 236-316 (950)
355 4hvt_A Ritya.17583.B, post-pro 88.0 17 0.00057 33.7 21.3 277 47-381 136-465 (711)
356 3no0_A DNA gyrase subunit A; D 86.4 11 0.00038 30.0 21.7 205 41-261 24-246 (276)
357 2wg3_C Hedgehog-interacting pr 85.3 18 0.00061 31.5 27.8 56 41-96 14-79 (463)
358 3b7f_A Glycosyl hydrolase, BNR 84.9 17 0.00057 30.7 32.3 164 40-206 54-254 (394)
359 3kci_A Probable E3 ubiquitin-p 82.9 20 0.0007 30.2 24.2 115 144-261 107-241 (389)
360 4gq2_M Nucleoporin NUP120; bet 79.8 8.5 0.00029 37.2 9.2 38 41-78 236-273 (950)
361 3q6k_A 43.2 kDa salivary prote 76.6 33 0.0011 28.8 21.8 174 41-214 87-305 (381)
362 1wp5_A Topoisomerase IV; broke 73.7 36 0.0012 27.9 25.0 155 95-261 3-174 (323)
363 1wp5_A Topoisomerase IV; broke 71.6 40 0.0014 27.5 25.8 203 50-261 3-225 (323)
364 1sqj_A OXG-RCBH, oligoxylogluc 71.0 71 0.0024 30.1 21.2 160 40-205 14-190 (789)
365 3zwu_A Alkaline phosphatase PH 70.6 14 0.00048 33.2 7.5 56 317-372 480-548 (592)
366 4fhn_B Nucleoporin NUP120; pro 68.3 21 0.00073 35.3 9.0 37 143-179 239-275 (1139)
367 3no0_A DNA gyrase subunit A; D 66.7 47 0.0016 26.4 21.4 207 143-385 25-246 (276)
368 1suu_A DNA gyrase subunit A; t 65.5 53 0.0018 26.6 27.7 159 95-261 6-181 (312)
369 4fhn_B Nucleoporin NUP120; pro 63.8 7.6 0.00026 38.4 5.0 38 41-78 238-275 (1139)
370 1suu_A DNA gyrase subunit A; t 63.5 59 0.002 26.4 28.0 203 50-261 6-231 (312)
371 1zi0_A DNA gyrase subunit A; b 63.3 58 0.002 26.3 28.3 252 95-386 1-278 (307)
372 3uc1_A DNA gyrase subunit A; D 63.1 62 0.0021 26.5 25.3 117 143-262 96-229 (327)
373 4a9v_A PHOX; hydrolase, beta-p 62.6 26 0.0009 31.3 7.5 56 317-372 480-548 (592)
374 3zwu_A Alkaline phosphatase PH 60.4 27 0.00092 31.4 7.4 59 43-103 478-548 (592)
375 1sqj_A OXG-RCBH, oligoxylogluc 60.0 1.2E+02 0.004 28.7 21.6 56 4-59 17-83 (789)
376 3l6v_A GYRA, DNA gyrase subuni 58.6 81 0.0028 26.4 26.2 212 40-261 45-316 (370)
377 4a9v_A PHOX; hydrolase, beta-p 58.6 66 0.0023 28.8 9.2 62 41-104 476-549 (592)
378 1olz_A Semaphorin 4D; developm 56.7 90 0.0031 28.7 10.2 70 42-111 398-477 (663)
379 3f7f_A Nucleoporin NUP120; nuc 55.9 22 0.00075 32.8 6.0 35 42-78 223-257 (729)
380 3f7f_A Nucleoporin NUP120; nuc 55.7 81 0.0028 29.2 9.5 36 143-180 223-258 (729)
381 3al9_A Plexin-A2; beta-propell 52.3 48 0.0016 29.5 7.6 71 41-111 400-476 (539)
382 1zi0_A DNA gyrase subunit A; b 50.5 99 0.0034 25.0 28.9 204 50-261 1-226 (307)
383 3l6v_A GYRA, DNA gyrase subuni 49.1 1.2E+02 0.004 25.4 28.1 161 93-261 3-180 (370)
384 1q47_A Semaphorin 3A; beta pro 41.8 1.8E+02 0.0062 25.5 10.3 56 325-380 422-487 (495)
385 1q47_A Semaphorin 3A; beta pro 38.7 79 0.0027 27.8 6.7 70 42-111 405-487 (495)
386 3nvq_A Semaphorin-7A; beta-pro 38.4 1.4E+02 0.0048 26.9 8.2 56 325-380 381-444 (590)
387 3al9_A Plexin-A2; beta-propell 33.1 91 0.0031 27.7 6.3 58 323-380 412-476 (539)
388 4gz8_A Semaphorin-3A; multi-do 31.1 1.3E+02 0.0046 27.5 7.1 58 54-111 431-495 (667)
389 1zvt_A Topoisomerase IV subuni 28.6 2.1E+02 0.0072 22.3 16.5 105 155-262 4-115 (256)
390 3q6k_A 43.2 kDa salivary prote 27.6 2.7E+02 0.0094 23.4 21.2 51 322-372 285-341 (381)
391 3a0f_A Xyloglucanase; beta-pro 26.5 4E+02 0.014 24.9 20.1 65 38-103 18-93 (763)
392 3nvq_A Semaphorin-7A; beta-pro 26.2 2.3E+02 0.0078 25.6 7.5 59 53-111 381-444 (590)
393 2cn3_A Xyloglucanase, beta-1,4 24.0 4.4E+02 0.015 24.5 27.7 63 41-104 23-91 (737)
394 4gz8_A Semaphorin-3A; multi-do 23.5 4.4E+02 0.015 24.3 11.0 56 325-380 430-495 (667)
395 3oky_A Plexin-A2; transmembran 23.2 2.2E+02 0.0075 26.3 7.0 70 42-111 400-475 (681)
396 3kci_A Probable E3 ubiquitin-p 23.0 3.3E+02 0.011 22.7 28.4 202 52-261 62-293 (389)
397 3ol2_B Plexin-B1; beta-propell 20.7 3.2E+02 0.011 24.3 7.3 56 325-380 401-461 (528)
398 3oky_A Plexin-A2; transmembran 20.0 3.2E+02 0.011 25.2 7.4 57 324-380 412-475 (681)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.1e-53 Score=353.86 Aligned_cols=290 Identities=15% Similarity=0.248 Sum_probs=253.9
Q ss_pred eeecccCceeEEEEcCC----CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 35 KVDGMNSRVYTSQFSND----GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.+.+|.+.|++++|+|+ +.+||+|+.|++|+||++..+... ......+|...|.+++|+|++..+++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45689999999999985 679999999999999999876432 2234567888999999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
+||+.+++... .+..+ ...+.+++|+|++++|++++.+|.|++||+++++....+..|...|.+++
T Consensus 106 lWd~~~~~~~~--~~~~~------------~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 106 LWDLENGKQIK--SIDAG------------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEETTTTEEEE--EEECC------------TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred EEECCCCCEEE--EEeCC------------CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 99998876532 22222 22588999999999999999999999999999999888988999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
|+ |++++|++|+.||.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.
T Consensus 172 ~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~--------- 237 (321)
T 3ow8_A 172 YS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH--------- 237 (321)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---------
T ss_pred EC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---------
Confidence 99 899999999999999999975 6778888999999999999999999999999999999999987
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
......+.+|... +.+++|+|++++|++++.|+.|++||+.+++++.++
T Consensus 238 -------------------------~~~~~~~~~h~~~------v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 238 -------------------------ANLAGTLSGHASW------VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp -------------------------CCEEEEECCCSSC------EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -------------------------cceeEEEcCCCCc------eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 3445666777643 345578999999999999999999999999999999
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 287 ~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 287 FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999974
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.5e-53 Score=365.83 Aligned_cols=290 Identities=22% Similarity=0.343 Sum_probs=257.8
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.++..... ..+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~---l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 457889999999999999999999999999999999998865543 34567789999999999999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
|+.+.+. ...+. +|...|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.++.++
T Consensus 178 d~~~~~~--~~~~~------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 178 DFQGFEC--IRTMH------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp ETTSSCE--EECCC------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred eCCCCce--eEEEc------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence 9987654 22232 344479999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC--------------------CCeEEEeecCC
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--------------------GRYFISNGKDQ 252 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~ 252 (408)
+++.+|++|+.|+.|++||++ .......+.+|...|.+++|+|+ +.+|++++.|+
T Consensus 244 -~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 244 -QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp -TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred -CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 899999999999999999975 66777888999999999999996 67899999999
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 332 (408)
.|++||+++ +..+..+.+|... +.+++|+|++++|++|+.
T Consensus 319 ~i~iwd~~~----------------------------------~~~~~~~~~h~~~------v~~v~~~~~g~~l~s~s~ 358 (410)
T 1vyh_C 319 TIKMWDVST----------------------------------GMCLMTLVGHDNW------VRGVLFHSGGKFILSCAD 358 (410)
T ss_dssp EEEEEETTT----------------------------------TEEEEEEECCSSC------EEEEEECSSSSCEEEEET
T ss_pred eEEEEECCC----------------------------------CceEEEEECCCCc------EEEEEEcCCCCEEEEEeC
Confidence 999999987 4566777777743 334478889999999999
Q ss_pred CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||.|++|+++
T Consensus 359 D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999863
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-51 Score=349.25 Aligned_cols=291 Identities=19% Similarity=0.332 Sum_probs=251.2
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
...+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+... ..|...|.+++|+|++++|++++.|+.+++|
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4578899999999999999999999999999999999988666543 3455589999999999999999999999999
Q ss_pred ECCCCcee--eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 113 DVGSSARE--SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
++.+.+.. ....+. +|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++
T Consensus 125 ~~~~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 191 (340)
T 1got_B 125 NLKTREGNVRVSRELA------------GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191 (340)
T ss_dssp ETTTCSBSCEEEEEEE------------CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECccCCCcceeEEEec------------CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEE
Confidence 99875421 122222 2444799999998875 88999999999999999999999999999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
|+ |++.+|++|+.|+.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||++..
T Consensus 192 ~~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-------- 258 (340)
T 1got_B 192 LA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-------- 258 (340)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred EC-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC--------
Confidence 99 889999999999999999976 67778889999999999999999999999999999999999872
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
+.+..+...... ..+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 259 --------------------------~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 259 --------------------------QELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp --------------------------EEEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred --------------------------cEEEEEccCCcc----cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence 222222211111 12345578999999999999999999999999999999
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
.+|.++|++++|+|++.+|++|+.||.|++||
T Consensus 309 ~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999997
No 4
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-52 Score=351.75 Aligned_cols=316 Identities=19% Similarity=0.297 Sum_probs=248.7
Q ss_pred eeeecccC-ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 34 WKVDGMNS-RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 34 ~~l~~h~~-~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
.++.+|.+ .|++++|+|+|++||+|+.|++|+||++.++..........+|...|.+++|+|++++|++++.|+.+++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 56789988 99999999999999999999999999998876544444456788899999999999999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc---ceeeecCcCCCceEE
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSDVNTV 189 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~l 189 (408)
++..........+..| ..+|.+++|+|++++|++++.|+.|++||+.++. .+..+.+|...|.++
T Consensus 89 ~~~~~~~~~~~~~~~h------------~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGH------------ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp EECCC-EEEEEEECCC------------SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred EccCCCeEEEEEccCC------------CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 9987765444444444 4489999999999999999999999999998764 355678899999999
Q ss_pred EEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 190 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
+|+ |++.+|++++.|+.|++||++. ........+.+|...|.+++|+|++++|++++.|++|++||...........
T Consensus 157 ~~~-p~~~~l~s~s~d~~i~~w~~~~--~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 157 VWH-PSQELLASASYDDTVKLYREEE--DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEC-SSSSCEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred EEC-CCCCEEEEEeCCCcEEEEEecC--CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence 999 8899999999999999999751 1223456788999999999999999999999999999999975422111100
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeec-ccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc---
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--- 345 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--- 345 (408)
.. ...+....+..+.+ |. ..++.++|+|++..|++++.|+.|++|+...+.
T Consensus 234 ~~-------------------~~~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 288 (345)
T 3fm0_A 234 CS-------------------GSDPSWKCICTLSGFHS------RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ 288 (345)
T ss_dssp CC----------------------CEEEEEEEECSSCS------SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT
T ss_pred ee-------------------ccCCccceeEEecCCCC------CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc
Confidence 00 00000122233333 32 234566888999999999999999999986542
Q ss_pred -e-----eEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCCCCC
Q 015371 346 -Q-----VAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 346 -~-----~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
. .....+|...|++++|+|++. +|++|+.||.|++|++...++.
T Consensus 289 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 289 QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 1 123358999999999999985 9999999999999999886654
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.2e-51 Score=347.08 Aligned_cols=294 Identities=19% Similarity=0.303 Sum_probs=250.9
Q ss_pred CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
....+.+|.+.|++++|+|++++||+|+.||+|++||..++....... .|...|.+++|+|++.+|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 345789999999999999999999999999999999998876655433 34447999999999999999999999999
Q ss_pred EECCCCcee----eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCce
Q 015371 112 VDVGSSARE----SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 112 w~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
|++...... ....+.. |...|.++.|+|++..|++++.|+.|++||+++++.+..+.+|...|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAM------------HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL 200 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEE------------CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEeccccccccccceeeec------------cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE
Confidence 998654221 1112222 444799999999999999999999999999999999999999999999
Q ss_pred EEEEecC-CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 188 TVCFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 188 ~l~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
+++|+|. ++++|++|+.||.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|+.|++||++..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---- 272 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---- 272 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC----
Confidence 9999843 56899999999999999976 67788889999999999999999999999999999999999872
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
..+..+..+... ..+.+.+|+|++++|++|+.|+.|++||+.+++.
T Consensus 273 ------------------------------~~~~~~~~~~~~----~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 273 ------------------------------REVAIYSKESII----FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp ------------------------------EEEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred ------------------------------cEEEEEcCCCcc----cceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 222222222111 1123447889999999999999999999999999
Q ss_pred eEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 347 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
+..+.+|.+.|++++|+|++++|++|+.||.|++|+
T Consensus 319 ~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999996
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-52 Score=358.97 Aligned_cols=308 Identities=20% Similarity=0.313 Sum_probs=253.8
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
...+.+|.+.|++++|+|++++||+|+.||+|+|||+.++...... ..|...|.+++|+|++++|++++.|+.+++|
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 3568899999999999999999999999999999999988666544 3455589999999999999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeee-----cCcCCCc
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI-----PAHKSDV 186 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v 186 (408)
++.+...... .........+|...+.++.|.|+ +..|++|+.|+.|++||+.+++.+..+ .+|...|
T Consensus 136 ~~~~~~~~~~-------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 136 NLSSQADRDG-------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp ECCCCSSCCC-------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred ECCCCccccC-------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9975432100 00011112345668999999996 457999999999999999999887766 6789999
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 187 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
.+++|+++++++|++|+.|++|++||++ .....+..+.+|...|.+++|+|++++|++++.|++|++||+++..
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--- 282 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--- 282 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETT---TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE---
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECC---CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc---
Confidence 9999997799999999999999999986 2456778889999999999999999999999999999999998732
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccce-eeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL-RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
.+..+..+... ......+.+++|+|+|++|++|+.||.|++||+.+++
T Consensus 283 -------------------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 283 -------------------------------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp -------------------------------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred -------------------------------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 22222222110 0011124456789999999999999999999999999
Q ss_pred eeEEE----ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 346 QVAKL----DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 346 ~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.+..+ .+|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 88877 6799999999999999999999999999999998754
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.4e-52 Score=352.32 Aligned_cols=323 Identities=18% Similarity=0.206 Sum_probs=232.1
Q ss_pred EecCCccEEEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeC------CCcEEEEEcCCCeeEEEe-cc
Q 015371 8 NYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ------ESNIKVYNVDKNWKIQKD-IE 80 (408)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~------dg~i~iw~~~~~~~~~~~-~~ 80 (408)
.+++++.++...+..... .|.. ++....+|+..|++++|||||++||+|+. |+.|++|+..++...... ..
T Consensus 12 d~g~~~~~~~~~g~~~~~-~w~~-p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~ 89 (357)
T 4g56_B 12 DLGTENLYFQSNGSSKGS-AWGR-PVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA 89 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE
T ss_pred CCCccceEEecCCCcccc-ccCC-CCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc
Confidence 344555555554433221 1111 12234689999999999999999999997 778999998776433222 22
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
...|...|.+++|+|++.+ ++++.||.|++||+.+++......... .+|...|.+++|+|++++|++|+
T Consensus 90 ~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~----------~~h~~~V~~v~~spdg~~l~sgs 158 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAK----------YEHDDIVKTLSVFSDGTQAVSGG 158 (357)
T ss_dssp EEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEE----------CCCSSCEEEEEECSSSSEEEEEE
T ss_pred cCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeecc----------CCCCCCEEEEEECCCCCEEEEEe
Confidence 3456668999999999865 567789999999998876533322211 23455899999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce--eeecccCCeEEEEe
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGITFIDS 238 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~ 238 (408)
.|+.|++||+++++.+..+.+|...|++++|+|....++++++.||.|++||++ .++... ....|...+.+++|
T Consensus 159 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 159 KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhh
Confidence 999999999999999999999999999999995555689999999999999986 333333 34457788999999
Q ss_pred cCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 239 RRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 239 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
+|++ .+|++++.|+.|++||+++ .+.+..+.+|... +.+
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~----------------------------------~~~~~~~~~~~~~------v~~ 274 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKN----------------------------------PDSAQTSAVHSQN------ITG 274 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSC----------------------------------GGGCEEECCCSSC------EEE
T ss_pred hhcccceEEEeecccceeEEECCC----------------------------------CcEeEEEecccee------EEE
Confidence 9974 6788999999999999987 3555666666643 334
Q ss_pred ccccCCC-cEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeC-CCCeEEeecCCCcEEEEeeCCCCC
Q 015371 318 PEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP-IYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 318 ~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++|+|++ ++|++|+.||.|+|||+++++.+..+ +|.+.|++++|+| ++++|+|++.||.|++|+++...+
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 4688876 68999999999999999999877665 7999999999998 788999999999999999977544
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-50 Score=334.30 Aligned_cols=293 Identities=15% Similarity=0.215 Sum_probs=247.2
Q ss_pred cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.....+.+|.+.|++++|+|++++|++++.||+|++||+.++..+... ..|..+|.+++|+|++++|++++.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 345678999999999999999999999999999999999998766543 34555899999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 189 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l 189 (408)
+||+.+++.. ..+..| ...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.++
T Consensus 81 vwd~~~~~~~--~~~~~h------------~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 81 VFNYNTGEKV--VDFEAH------------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp EEETTTCCEE--EEEECC------------SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred EEECCCCcEE--EEEeCC------------CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 9999887653 333333 347999999999999999999999999999877 4556788999999999
Q ss_pred EEecCCCCEEEEecCCCeEEEEeccccccCCcccee-eecccCCeEEEEecC--CCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 190 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
+|+|.++.+|++|+.|++|++||++ ....... ..+|...+..+.++| ++.+|++++.|+.|++||+++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~----- 217 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-----
T ss_pred EECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-----
Confidence 9996578999999999999999986 3333333 345668899999986 778999999999999999987
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
...+..+.+|.... ...+|+|++.+|++|+.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~h~~~v------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 218 -----------------------------KSCVATLEGHMSNV------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp -----------------------------TEEEEEEECCSSCE------EEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred -----------------------------CccceeeCCCCCCE------EEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 45677788887443 3446888999999999999999999999999
Q ss_pred eEEEccCCCCeeeeeEeCCCC--eEEeecCCCcEEEEeeCC
Q 015371 347 VAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~~~~ 385 (408)
+..+..|...+.+++|+|++. ++++|+.| .+.+|++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred eeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 999999999999999999886 57777655 577888765
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.2e-51 Score=343.52 Aligned_cols=295 Identities=17% Similarity=0.210 Sum_probs=232.8
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe--------eEEEecccccceeeEEEEEeCCCCceEEEeecCc
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--------KIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 107 (408)
...|...|.+++|+|||++|++++ |+++++||..... ..........+...|.+++|+|++ .|++++.||
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 346788899999999999999887 6788888732100 000001112234579999999985 678999999
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCce
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
.|++||+.+++......... .+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|+
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~----------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCK----------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEE----------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEEeccCCCceeEeeccc----------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 99999998876543322211 13455899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee--ecccCCeEEEEecCC-CCeEEEeecCCeEEEEeCCCCcC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL--MGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
+++|+|.+..+|++++.|++|++||++ .++....+ ..|...+.+++|+|+ +++|++|+.||.|++||+++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--- 246 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--- 246 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred EEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC---
Confidence 999995555789999999999999986 45555544 345667999999985 56788999999999999987
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC-cEEEEeeCCCeEEEEECCC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~vwd~~~ 343 (408)
++.+..+.+|... +.+++|+|++ ++|++|+.|++|++||+.+
T Consensus 247 -------------------------------~~~~~~~~~h~~~------v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 247 -------------------------------TSCVLSSAVHSQC------VTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ---------------------------------CCEEEECCSSC------EEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred -------------------------------CcEEEEEcCCCCC------EEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 4566777888743 3445788887 6899999999999999988
Q ss_pred CceeEEEccCCCCeeeeeEeCCCC-eEEeecCCCcEEEEeeCCCC
Q 015371 344 GAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~ 387 (408)
++++ .+.+|.+.|++++|+|+++ +|+++|.||+|++|++++..
T Consensus 290 ~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 290 SELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 8754 5789999999999999987 57789999999999998743
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-49 Score=363.33 Aligned_cols=337 Identities=17% Similarity=0.201 Sum_probs=263.0
Q ss_pred ceeeEecCCcc-EEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 4 GREVNYSGRGR-FSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 4 ~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
..+++|+|++. .+++++.+...++|.... ...+.+|.+.|.+++|+|||++||+|+.|++|++||+.+++......
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~ 229 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 229 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec
Confidence 36899999997 488888888778887543 34678999999999999999999999999999999998886665432
Q ss_pred c----cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeee-ee----ee-------------------
Q 015371 80 E----TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTI-HK----GL------------------- 131 (408)
Q Consensus 80 ~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~-~~----~~------------------- 131 (408)
. ..+|...|.+++|+|++++|++++.|++|++||+.+++......... .. ..
T Consensus 230 ~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 1 12677899999999999999999999999999998876533221100 00 00
Q ss_pred -----eeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cC------------------------
Q 015371 132 -----DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PA------------------------ 181 (408)
Q Consensus 132 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~------------------------ 181 (408)
.......+|...|.+++|+|++++|++++.|+.|++||+.+++....+ ..
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~ 389 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 389 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence 001112467889999999999999999999999999999876543221 01
Q ss_pred ---------------------------------------------------------cCCCceEEEEecCCCCEEEEecC
Q 015371 182 ---------------------------------------------------------HKSDVNTVCFADETGHLIFSGSD 204 (408)
Q Consensus 182 ---------------------------------------------------------~~~~v~~l~~~~~~~~~l~~~~~ 204 (408)
|...+.+++|+ |++++|++|+.
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s-pdg~~lasgs~ 468 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS-NDKQFVAVGGQ 468 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC-TTSCEEEEEET
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe-CCCCEEEEeCC
Confidence 22446788998 88999999999
Q ss_pred CCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecc
Q 015371 205 DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 284 (408)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
|++|++||+... ....... .+|...|++++|+|++++|++++.|++|++||+.+..
T Consensus 469 D~~v~lwd~~~~--~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--------------------- 524 (611)
T 1nr0_A 469 DSKVHVYKLSGA--SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--------------------- 524 (611)
T ss_dssp TSEEEEEEEETT--EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---------------------
T ss_pred CCeEEEEEccCC--ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC---------------------
Confidence 999999997521 1112233 6799999999999999999999999999999987511
Q ss_pred cccceeeccCCCccee--eeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc-ee-EEEccC-CCCeee
Q 015371 285 PSYARRLKHPHDQSLA--TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-QV-AKLDFH-NAPVRD 359 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~-~~~~~~-~~~v~~ 359 (408)
+... .+..|. ..+.+++|+|||++|++|+.|++|++||+.+++ .+ ..+.+| ...|++
T Consensus 525 ------------~~~~~~~~~~H~------~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~ 586 (611)
T 1nr0_A 525 ------------ELAHTNSWTFHT------AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS 586 (611)
T ss_dssp ------------EESCCCCCCCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEE
T ss_pred ------------ceeeeeeeeecc------cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeE
Confidence 1111 122244 234566899999999999999999999998865 33 567789 899999
Q ss_pred eeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 360 CCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 360 ~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
++|+|+++ |++++.|++|++|+++
T Consensus 587 v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 587 VIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEcCCCE-EEEecCCCCEEEEecc
Confidence 99999998 9999999999999974
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-48 Score=328.43 Aligned_cols=292 Identities=29% Similarity=0.465 Sum_probs=248.6
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.+|.+.|++++|+|++++||+|+.||.|++|++.++...... ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh---ccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 467899999999999999999999999999999999887655433 45666899999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
+.+++.. ..+..+ ...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+
T Consensus 94 ~~~~~~~--~~~~~~------------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~- 158 (312)
T 4ery_A 94 VSSGKCL--KTLKGH------------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN- 158 (312)
T ss_dssp TTTCCEE--EEEECC------------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-
T ss_pred CCCCcEE--EEEcCC------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc-
Confidence 9887643 233333 3379999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
+++++|++++.||.|++||++ ..+.+..+ ..+...+..++|+|++++|++++.|+.|++||+++
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------- 223 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----------- 223 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-----------
T ss_pred CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-----------
Confidence 889999999999999999975 44544444 45667899999999999999999999999999987
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 352 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (408)
.+.+..+.+|..........+ ..+++.+|++|+.||.|++||+.+++.+..+.+
T Consensus 224 -----------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 277 (312)
T 4ery_A 224 -----------------------GKCLKTYTGHKNEKYCIFANF---SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277 (312)
T ss_dssp -----------------------TEEEEEECSSCCSSSCCCEEE---ECSSSCEEEECCTTSCEEEEETTTCCEEEEECC
T ss_pred -----------------------CcEEEEEEecCCceEEEEEEE---EeCCCcEEEEECCCCEEEEEECCCchhhhhhhc
Confidence 344455555543322222222 234688999999999999999999999999999
Q ss_pred CCCCeeeeeEeCCCCeEEeec--CCCcEEEEeeC
Q 015371 353 HNAPVRDCCWHPIYPMLISSS--WDCNIVRWEIP 384 (408)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~--~dg~v~iw~~~ 384 (408)
|...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 278 h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 278 HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999986 69999999864
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.4e-49 Score=359.18 Aligned_cols=321 Identities=15% Similarity=0.181 Sum_probs=260.1
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEe---cCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPV---NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~---~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|||||+.++..... ...++.. .....+.+|.+.|++++|+|||++||+|+.|++|+|||+.++..... ..
T Consensus 21 ~~~~~~spdg~~l~~~~~~-~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~ 98 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TT 98 (611)
T ss_dssp CCCCEECTTSSEEEEEETT-EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EE
T ss_pred eeEEeeCCCCCEEEeCCCC-EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee-Ee
Confidence 3578999999988876644 4445553 34567889999999999999999999999999999999875433221 23
Q ss_pred cccceeeEEEEEeCCCCceEEEeecC----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-E
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-E 155 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 155 (408)
...|...|.+++|+|+++.|++++.+ +.|++||... . ...+. +|...|.+++|+|++. .
T Consensus 99 ~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~--~~~l~------------gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 99 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--S--NGNLT------------GQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--B--CBCCC------------CCSSCEEEEEECSSSSCE
T ss_pred ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--C--cceec------------CCCCCceEEEECCCCCeE
Confidence 34566789999999999999988865 4788887432 1 12222 3455899999999987 5
Q ss_pred EEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-------c
Q 015371 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------G 228 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 228 (408)
|++++.|+.|++||..++++...+.+|...|.+++|+ |++++|++++.|++|++||++ .++....+. +
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccc
Confidence 9999999999999999999889999999999999999 899999999999999999975 555555553 7
Q ss_pred ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccc-
Q 015371 229 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV- 307 (408)
Q Consensus 229 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (408)
|.+.|.+++|+|++++|++++.|++|++||+++. +.+..+..+..
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~----------------------------------~~~~~~~~~~~~ 283 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATL----------------------------------KVEKTIPVGTRI 283 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------EEEEEEECCSSG
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------------------ceeeeecCCCCc
Confidence 9999999999999999999999999999999873 22333322111
Q ss_pred eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 308 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
........ + ++..+++++.||.+++||..+++....+.+|...|++++|+|++++|++++.|+.|++||+.++.
T Consensus 284 ~~~~~~~~----~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 284 EDQQLGII----W--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp GGCEEEEE----E--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cceeEEEE----E--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 11111122 2 47889999999999999999999888999999999999999999999999999999999998754
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-48 Score=355.79 Aligned_cols=310 Identities=25% Similarity=0.363 Sum_probs=268.1
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC--ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG--PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
.+++|+|||+++++++.+...+++.... ...+.+|...|.+++|+|++++|++++.|+.|++||.... .+.. ..
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~---~~ 341 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQT---LT 341 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEE---EC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEE---Ee
Confidence 5789999999999887777777776543 3467899999999999999999999999999999998765 3332 34
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
.|...|.+++|+|++++|++++.|+.+++|+..... ...+.. |..+|.+++|+|++++|++++.|
T Consensus 342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~---~~~~~~------------~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTG------------HSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE---EEEEEC------------CSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE---EEEecC------------CCCCeEEEEECCCCCEEEEEeCC
Confidence 556689999999999999999999999999965432 222222 33479999999999999999999
Q ss_pred CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
+.|++||. +++.+..+.+|...|++++|+ |++++|++++.|+.|++||. .++.+..+.+|...|.+++|+|++
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCCEEEEEEcCCC
Confidence 99999996 567788889999999999999 89999999999999999995 567778889999999999999999
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
++|++++.|+.|++||... +.+..+.+|... +.+++|+|
T Consensus 480 ~~las~~~d~~i~iw~~~~-----------------------------------~~~~~~~~h~~~------v~~l~~s~ 518 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRNG-----------------------------------QLLQTLTGHSSS------VRGVAFSP 518 (577)
T ss_dssp CEEEEEETTSEEEEEETTS-----------------------------------CEEEEEECCSSC------EEEEEECT
T ss_pred CEEEEEeCCCEEEEEcCCC-----------------------------------CEEEEEeCCCCC------EEEEEEcC
Confidence 9999999999999999643 556777777743 33457899
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEe
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
++++|++++.||.|++||. +++++..+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus 519 dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999995 7889999999999999999999999999999999999997
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-48 Score=327.67 Aligned_cols=292 Identities=18% Similarity=0.288 Sum_probs=243.9
Q ss_pred eeeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCee--EEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK--IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.+|.+|.+.|++++|+|++ ++|++|+.|++|++|++..... ........+|...|.+++|+|++++|++++.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 4688999999999999965 8999999999999999864321 122334567788999999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 190 (408)
+||+.+++.. ..+..| ..+|.+++|+|++.+|++|+.|+.|++||++ ++.+..+.+|...|.++.
T Consensus 91 ~wd~~~~~~~--~~~~~h------------~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 91 LWDVATGETY--QRFVGH------------KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp EEETTTTEEE--EEEECC------------SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred EEECCCCCee--EEEccC------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence 9999988652 333333 4479999999999999999999999999996 556778889999999999
Q ss_pred EecC-----CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCc
Q 015371 191 FADE-----TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 191 ~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
|.|. ++.++++++.|+.|++||++ ..+....+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---- 227 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---- 227 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT----
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----
Confidence 9942 34589999999999999975 5677778889999999999999999999999999999999987
Q ss_pred cccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 266 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
.+.+..+..+. .+.+++|+|++.+|++++.+ .+++|++....
T Consensus 228 ------------------------------~~~~~~~~~~~-------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~ 269 (319)
T 3frx_A 228 ------------------------------KKAMYTLSAQD-------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY 269 (319)
T ss_dssp ------------------------------TEEEEEEECCS-------CEEEEEECSSSSEEEEEETT-EEEEEEETTEE
T ss_pred ------------------------------CcEEEEecCCC-------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe
Confidence 34444444432 23456789999999988765 59999998887
Q ss_pred eeEEEcc--------CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 346 QVAKLDF--------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 346 ~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.+..+.. |...+.+++|+|+|++|++|+.||.|++||+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 7776642 4567999999999999999999999999999763
No 15
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-48 Score=332.15 Aligned_cols=320 Identities=15% Similarity=0.180 Sum_probs=260.3
Q ss_pred ceeeEecCCccEEEeecCce---EEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHV---LSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~---~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|||||++++...... .+............+|.+.|++++|+|++++|++++ ||.|++|++.++........
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 35799999999987654222 111111122334568999999999999999999999 99999999987643322222
Q ss_pred --cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 81 --TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 81 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
...|...|.+++|+|++++|++++.||.|++||+.+++.........+. ..|.+++|+|+++++++
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA------------PACYALAISPDSKVCFS 158 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS------------SCEEEEEECTTSSEEEE
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC------------CceEEEEECCCCCEEEE
Confidence 2256678999999999999999999999999999887644444443333 37999999999999999
Q ss_pred EecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 159 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
++.||.|++||+++++....+..|...|.+++|+ +++++|++++.||.|++||++ ..+....+ .+...+.+++|
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~~ 232 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGY 232 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEE
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEEE
Confidence 9999999999999999999999999999999999 889999999999999999975 44555444 47788999999
Q ss_pred cCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeec
Q 015371 239 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 318 (408)
Q Consensus 239 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
+|++++|++++.|+.|++||+++. ....+..|.. .+..+
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~-----------------------------------~~~~~~~~~~------~v~~~ 271 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKP-----------------------------------DKYQLHLHES------CVLSL 271 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSS-----------------------------------CEEEECCCSS------CEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCC-----------------------------------CeEEEcCCcc------ceeEE
Confidence 999999999999999999999872 1233344442 23455
Q ss_pred cccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 319 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 319 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 78889999999999999999999999887554 478899999999999999999999999999973
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-48 Score=328.71 Aligned_cols=303 Identities=19% Similarity=0.267 Sum_probs=229.3
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
...+.+|.+.|++++|+|+ +||+|+.|++|++|++..+. ..........|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 3568899999999999987 99999999999999998753 22222222347779999999999999999999999999
Q ss_pred EECCCCce-----eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC----cceeeecCc
Q 015371 112 VDVGSSAR-----ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN----KCSLRIPAH 182 (408)
Q Consensus 112 w~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~ 182 (408)
|++..... .....+ .+|...|.+++|+|++++|++|+.|+.|++||+... +++..+.+|
T Consensus 85 w~~~~~~~~~~~~~~~~~~------------~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAII------------EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp EEC-------CCCEEEEEE------------C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred EEcccCcCccccceeEEEE------------cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 99864321 112222 234558999999999999999999999999999432 456678899
Q ss_pred CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC--CCeEEEeecCCeEEEEeCC
Q 015371 183 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~ 260 (408)
...|.+++|+ |++.+|++++.|++|++||.+. .....+..+.+|...|.+++|+|+ +.+|++++.|++|++||++
T Consensus 153 ~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 153 SQDVKHVIWH-PSEALLASSSYDDTVRIWKDYD--DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp SSCEEEEEEC-SSSSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred CCceEEEEEC-CCCCEEEEEcCCCeEEEEECCC--CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 9999999999 8899999999999999999751 122567788999999999999998 6789999999999999987
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeec-ccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEE
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 339 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vw 339 (408)
........ .......+.. |.. .+++++|++++ +|++++.||.|++|
T Consensus 230 ~~~~~~~~--------------------------~~~~~~~~~~~h~~------~v~~v~~s~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 230 GDDEDDQQ--------------------------EWVCEAILPDVHKR------QVYNVAWGFNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EECTTSCE--------------------------EEEEEEECCSCCSS------CEEEEEECTTS-CEEEEETTSCEEEE
T ss_pred CCCccccc--------------------------eeEEeeeccccccc------ceEEEEEcCCC-EEEEEeCCCEEEEE
Confidence 63211000 0011222222 332 23444666554 89999999999999
Q ss_pred ECCCCc--eeEE-EccCCC-CeeeeeEeC--CCCeEEeecCCCcEEEEeeCC
Q 015371 340 DLVSGA--QVAK-LDFHNA-PVRDCCWHP--IYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 340 d~~~~~--~~~~-~~~~~~-~v~~~~~~~--~~~~l~s~~~dg~v~iw~~~~ 385 (408)
|..+++ .... ..+|.. .|++++|+| ++++|++++.||.|++|++..
T Consensus 277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 998774 3333 357876 899999999 688999999999999999865
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-48 Score=334.77 Aligned_cols=302 Identities=25% Similarity=0.422 Sum_probs=242.3
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc---------------cceeeEEEEEeCCCCceEE
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK---------------ALRWTITDTSLSPDQRFLV 101 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~ 101 (408)
.+|.+.|.+++|+|||++||+|+ ++.+++|++.++..+....... .+...|.+++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999986 6799999999886655433221 1122499999999999999
Q ss_pred EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC
Q 015371 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 181 (408)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 181 (408)
+++.|+.|++||+.+++.. ..+.. |...|.+++|+|++++|++++.|+.|++||+++++....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~--~~~~~------------h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~- 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIV--MILQG------------HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS- 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEE--EEECC------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EEcCCCeEEEEECCCCcEE--EEEcc------------CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-
Confidence 9999999999999887542 22333 34479999999999999999999999999999998877776
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-------ecccCCeEEEEecCCCCeEEEeecCCeE
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------MGHLEGITFIDSRRDGRYFISNGKDQTT 254 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i 254 (408)
+...+.+++|+|.++.+|++|+.|+.|++||++ .+..+..+ .+|...|.+++|+|++++|++++.|+.|
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 567899999996699999999999999999975 44444444 5789999999999999999999999999
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 334 (408)
++||++......... ..........+.+|... +.+++++|++.+|++|+.||
T Consensus 281 ~~wd~~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 281 KLWNLQNANNKSDSK----------------------TPNSGTCEVTYIGHKDF------VLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp EEEEC-------------------------------------CEEEEEECCSSC------EEEEEECGGGCEEEEEETTS
T ss_pred EEEECCCCCCccccc----------------------CCCCCcceEEEecccCc------EEEEEECCCCCEEEEEeCCC
Confidence 999998643211100 00012334455666532 34457888899999999999
Q ss_pred eEEEEECCCCceeEEEccCCCCeeeeeEeC------CCCeEEeecCCCcEEEEeeCCC
Q 015371 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHP------IYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.|++||+.+++.+..+.+|...|.+++|++ ++++|++|+.||.|++|++...
T Consensus 333 ~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 333 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred eEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999999999999999886 6789999999999999998754
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.4e-48 Score=327.69 Aligned_cols=293 Identities=16% Similarity=0.286 Sum_probs=235.7
Q ss_pred CceeeecccCceeEEEE-----cC-CCCeEEEEeCCCcEEEEEcCCCee----EEEecccccceeeEEEEEeCCCCceEE
Q 015371 32 GPWKVDGMNSRVYTSQF-----SN-DGSFFVAASQESNIKVYNVDKNWK----IQKDIETKALRWTITDTSLSPDQRFLV 101 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~-----s~-~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~ 101 (408)
....+.+|.+.|++++| ++ ++++||+|+.|++|++||+..... ........+|...|.+++|+|++.+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 34578999999999999 77 999999999999999999975421 112233456777999999999999999
Q ss_pred EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee--
Q 015371 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-- 179 (408)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 179 (408)
+++.|+.|++||+.+++.. ..+..| ...|.+++|+|++++|++++.|+.|++||+.... ....
T Consensus 93 s~s~D~~v~lwd~~~~~~~--~~~~~h------------~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 157 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTY--KRFVGH------------QSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAE 157 (343)
T ss_dssp EEETTSEEEEEETTSSCEE--EEEECC------------CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred EEcCCCcEEEEECCCCcEE--EEEcCC------------CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence 9999999999999887642 233333 3479999999999999999999999999997433 3222
Q ss_pred -cCcCCCceEEEEecCCC----------CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEe
Q 015371 180 -PAHKSDVNTVCFADETG----------HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 248 (408)
Q Consensus 180 -~~~~~~v~~l~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 248 (408)
..|...|.+++|+ |++ .+|++++.|+.|++||. .......+.+|...|.+++|+|++++|+++
T Consensus 158 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 158 KENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp TTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3688999999999 544 78999999999999994 455667788999999999999999999999
Q ss_pred ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEE
Q 015371 249 GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 328 (408)
Q Consensus 249 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 328 (408)
+.||.|++||++... .....+.... .+.+++|+|++.+++
T Consensus 232 s~dg~v~iwd~~~~~---------------------------------~~~~~~~~~~-------~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 232 GKDKKLLIWDILNLT---------------------------------YPQREFDAGS-------TINQIAFNPKLQWVA 271 (343)
T ss_dssp ETTCEEEEEESSCCS---------------------------------SCSEEEECSS-------CEEEEEECSSSCEEE
T ss_pred cCCCeEEEEECCCCc---------------------------------ccceeecCCC-------cEEEEEECCCCCEEE
Confidence 999999999985421 1112221111 134557888898877
Q ss_pred EeeCCCeEEEEECCCCceeE--EEc-----------cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 329 TGSSDNSVYIYDLVSGAQVA--KLD-----------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 329 ~~~~dg~i~vwd~~~~~~~~--~~~-----------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
++ .|+.|++||+.+++... .+. +|...|++++|+|++++|++|+.||.|++|++.++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 55 57789999998776543 443 67888999999999999999999999999998764
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-47 Score=347.27 Aligned_cols=313 Identities=26% Similarity=0.357 Sum_probs=270.1
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC--ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG--PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~--~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
.++++|+|||+++++++.+...++|.... ...+.+|...|.+++|+|++++|++++.|+.|++|+.... .... .
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~~---~ 299 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQT---L 299 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEE---E
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEEE---E
Confidence 36899999999999888777777776543 3467899999999999999999999999999999997543 3332 3
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
.+|...|.+++|+|+++.|++++.|+.|++||....... .+.. |..++.+++|+|++++|++++.
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---~~~~------------~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---TLTG------------HSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE---EECC------------CSSCEEEEEECTTSSEEEEEET
T ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE---EEeC------------CCCCEEEEEECCCCCEEEEEeC
Confidence 456678999999999999999999999999998765432 2222 3347999999999999999999
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
|+.|++||. +++.+..+.+|...|++++|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|+
T Consensus 365 dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-----~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 365 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp TSEEEEEET-TCCEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECT-----TCCEEEEEECCSSCEEEEEECTT
T ss_pred CCEEEEEcC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-----CCCEEEEecCCCCCeEEEEECCC
Confidence 999999996 567788889999999999999 89999999999999999995 56778888999999999999999
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
+++|++++.|+.|++||... +.+..+.+|... +.+++|+
T Consensus 438 ~~~l~~~~~d~~v~~w~~~~-----------------------------------~~~~~~~~~~~~------v~~~~~s 476 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNRNG-----------------------------------QLLQTLTGHSSS------VRGVAFS 476 (577)
T ss_dssp SSEEEEEETTSEEEEEETTS-----------------------------------CEEEEEECCSSC------EEEEEEC
T ss_pred CCEEEEEcCCCEEEEEECCC-----------------------------------CEEEEEcCCCCC------EEEEEEc
Confidence 99999999999999999754 455666677643 3445789
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.||.|++||+.
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 99999999999999999995 788999999999999999999999999999999999999964
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-46 Score=329.20 Aligned_cols=331 Identities=17% Similarity=0.220 Sum_probs=265.3
Q ss_pred ceeeEecCCcc-EEEeecCceEEEEEEe----cC---------ceeeec----------ccCceeEEEEcCCCCeEEEEe
Q 015371 4 GREVNYSGRGR-FSAADSCHVLSRYLPV----NG---------PWKVDG----------MNSRVYTSQFSNDGSFFVAAS 59 (408)
Q Consensus 4 ~~~~~~s~dg~-~~~~~~~~~~~~~~~~----~~---------~~~l~~----------h~~~v~~~~~s~~~~~l~t~~ 59 (408)
..+++|+|+|. ++++++.+....+|.. .. ...+.. |.+.|++++|+|++++|++++
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 46899999999 9988777665555554 21 222333 688999999999999999999
Q ss_pred CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeee-eecCCC
Q 015371 60 QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLD-FSADGD 138 (408)
Q Consensus 60 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (408)
.||.|++|+ .++..+... ..|...|.+++|+|++++|++++.|+.|++||+.+++.............. ......
T Consensus 128 ~dg~i~i~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 128 ENGELRLWN-KTGALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp TTSCEEEEE-TTSCEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred CCCeEEEEe-CCCCeeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 999999999 444444433 356668999999999999999999999999999887654332221111000 000000
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc
Q 015371 139 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 218 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (408)
.....+.++.|++++ .+++++.+|.|++||+.+++.+..+..|...|.+++|+ +++++|++++.|+.|++||++
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~---- 277 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLSASDDGTLRIWHGG---- 277 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEECSS----
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECC----
Confidence 111128889999886 58889999999999999999999999999999999999 889999999999999999975
Q ss_pred CCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcc
Q 015371 219 KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 298 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
..+....+.+|...|.++.|+|++ ++++++.|+.|++||+++ ...
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~----------------------------------~~~ 322 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ----------------------------------NTL 322 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT----------------------------------TEE
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC----------------------------------CcE
Confidence 667788888899999999999999 999999999999999987 344
Q ss_pred eeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc--------------------eeEEEccCCC--C
Q 015371 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--------------------QVAKLDFHNA--P 356 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------------------~~~~~~~~~~--~ 356 (408)
+..+..|.. .+..++|+|++++|++++.||.|++||+.+++ .+..+..|.. .
T Consensus 323 ~~~~~~~~~------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (425)
T 1r5m_A 323 LALSIVDGV------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396 (425)
T ss_dssp EEEEECTTC------CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred eEecccCCc------cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence 555555553 23445788899999999999999999999888 8899999976 9
Q ss_pred eeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 357 VRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
|++++|+|++++|++++.||.|++|+++.
T Consensus 397 v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred eEEEEccCCCceEEEEecCceEEEEeecC
Confidence 99999999999999999999999999863
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.7e-46 Score=315.43 Aligned_cols=294 Identities=19% Similarity=0.273 Sum_probs=240.0
Q ss_pred eeeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeE--EEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 34 WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
.+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+.. .......+|...|.+++|+|++++|++++.|+.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 368899999999999997 689999999999999999865322 12233456778999999999999999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc-eeeecCcCCCceEE
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDVNTV 189 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l 189 (408)
+|+........... .. ...+..+.+++++.+|++++.|+.+++||+..... .....+|...+..+
T Consensus 112 ~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 112 LWDLTTGTTTRRFV--GH------------TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp EEETTTTEEEEEEE--CC------------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred EEeecccceeeeec--CC------------CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 99998776533322 22 22588889999999999999999999999876544 33456789999999
Q ss_pred EEecC-CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccc
Q 015371 190 CFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 268 (408)
Q Consensus 190 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 268 (408)
+|++. ...++++++.|+.|++||++ ..+....+.+|...|++++|+|++++|++++.|+.|++||+++
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~------- 246 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE------- 246 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-------
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-------
Confidence 99843 24578899999999999975 6778888999999999999999999999999999999999987
Q ss_pred ccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 269 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
...+..+..+.. +....++|++. +++++.|+.|++||++++..+.
T Consensus 247 ---------------------------~~~~~~~~~~~~-------v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 247 ---------------------------GKHLYTLDGGDI-------INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp ---------------------------TEEEEEEECSSC-------EEEEEECSSSS-EEEEEETTEEEEEETTTTEEEE
T ss_pred ---------------------------CceeeeecCCce-------EEeeecCCCCc-eeeccCCCEEEEEECCCCeEEE
Confidence 344445544432 23335677665 5566679999999999887766
Q ss_pred EEc---------cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 349 KLD---------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 349 ~~~---------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.+. +|...|++++|+|++++|++|+.||.|+|||+.++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 653 578899999999999999999999999999999875
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-48 Score=338.79 Aligned_cols=328 Identities=14% Similarity=0.210 Sum_probs=263.8
Q ss_pred ceeeEecCCcc-EEEee----------cCceEEEEEEecC-----ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEE
Q 015371 4 GREVNYSGRGR-FSAAD----------SCHVLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVY 67 (408)
Q Consensus 4 ~~~~~~s~dg~-~~~~~----------~~~~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw 67 (408)
..+++|||||+ +++++ +.+...++|.... +.....|...|.+++|+|++++|++++.||.|++|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 46899999997 88877 5555566666543 23334789999999999999999999999999999
Q ss_pred EcCC----CeeEEEecccccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceee----eeeeeeeeeeeeecCCC
Q 015371 68 NVDK----NWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARES----LANVTIHKGLDFSADGD 138 (408)
Q Consensus 68 ~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~ 138 (408)
++.+ ..... ....|...|.+++|+|+ +++|++++.|+.|++||+.+.+... .... ....
T Consensus 95 ~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~~~ 162 (416)
T 2pm9_A 95 STNEANNAINSMA---RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---------GQSM 162 (416)
T ss_dssp CCSSTTSCCCEEE---ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---------CCSC
T ss_pred ecccccccccchh---hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---------cccc
Confidence 9987 22222 34456778999999998 8999999999999999998775110 0000 0112
Q ss_pred CCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeeecCc------CCCceEEEEecCCCCEEEEecCCC---eE
Q 015371 139 EDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAH------KSDVNTVCFADETGHLIFSGSDDS---LC 208 (408)
Q Consensus 139 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~l~~~~~dg---~i 208 (408)
.|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|.+..++++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 34558999999998 789999999999999999999988888766 789999999944457999999999 99
Q ss_pred EEEeccccccCCccceeee-cccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccc
Q 015371 209 KVWDRRCFISKGRANGVLM-GHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 286 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (408)
++||++. .......+. +|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus 243 ~~~d~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~------------------------- 294 (416)
T 2pm9_A 243 LIWDLRN---ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES------------------------- 294 (416)
T ss_dssp CEEETTS---TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-------------------------
T ss_pred EEEeCCC---CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-------------------------
Confidence 9999862 235666777 8999999999999 999999999999999999987
Q ss_pred cceeeccCCCcceeeeecccceeeEEEEEeeccccCCC-cEEEEeeCCCeEEEEECCCCceeEEEc--------------
Q 015371 287 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKLD-------------- 351 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------- 351 (408)
.+.+..+..|... +.+++|+|++ .+|++++.||.|++||+.+++......
T Consensus 295 ---------~~~~~~~~~~~~~------v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 295 ---------AEQLSQFPARGNW------CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp ---------CCEEEEEECSSSC------CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred ---------CccceeecCCCCc------eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 4556666666632 3445788888 899999999999999998765432211
Q ss_pred ---------------------cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 352 ---------------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 352 ---------------------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.|..++++++|+|+|++|++++.||.|+||++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16678889999999999999999999999999864
No 23
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-47 Score=335.56 Aligned_cols=304 Identities=14% Similarity=0.154 Sum_probs=228.7
Q ss_pred eeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEE
Q 015371 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w 112 (408)
...+|...|+||+|+| ++++||+|+.||+|+|||+.++.... .....+|...|++++|+| ++++|++++.||+|++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 4568899999999999 56799999999999999998764332 334567888999999998 68999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
|+++.......... .+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|++++|+
T Consensus 193 d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 193 DFKGNILRVFASSD------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp ETTSCEEEEEECCS------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEEC
T ss_pred eccCCceeEEeccC------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeec
Confidence 99876443222211 122358899999999999999999999999996 45677888999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 272 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 272 (408)
|....+|++|+.|+.|++||++.... ........+|...|++++|+|++++|++++.||.|++||+++.......
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~---- 334 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL---- 334 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE----
T ss_pred CCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE----
Confidence 55566899999999999999873221 1223344679999999999999999999999999999999874432211
Q ss_pred ccccccceeecccccceeeccCCCcceeeeecccce----eeEEEEE-------eeccccCCCcEEEEee-CCCeEEEEE
Q 015371 273 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL----RTLIRCY-------FSPEYSTAQKYIYTGS-SDNSVYIYD 340 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~s~~~~~l~~~~-~dg~i~vwd 340 (408)
..|... ....... ....+++++..+++++ .++.|++||
T Consensus 335 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd 384 (435)
T 4e54_B 335 ------------------------------IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384 (435)
T ss_dssp ------------------------------CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred ------------------------------ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence 111100 0000000 0112334444443333 346799999
Q ss_pred CCCCceeEEEc-cCCCCeeee-eEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 341 LVSGAQVAKLD-FHNAPVRDC-CWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 341 ~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 385 ~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 385 GNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 99999988874 678889887 6999999999876 88999999987653
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=313.02 Aligned_cols=277 Identities=21% Similarity=0.339 Sum_probs=237.0
Q ss_pred ceeeEecCC----ccEEEeecCceEEEEEEecC-----ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee
Q 015371 4 GREVNYSGR----GRFSAADSCHVLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 4 ~~~~~~s~d----g~~~~~~~~~~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
..+++|+|+ +.++++++.+...++|.... ...+.+|...|.+++|+|++.++++++.|++|++||+.+++.
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~ 114 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 114 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE
Confidence 368999885 56889888888777776543 235789999999999999999999999999999999999877
Q ss_pred EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
+..... +...+.+++|+|++++|++++.+|.+++|++.+++... .+..+ ...|.+++|+|+++
T Consensus 115 ~~~~~~---~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~--~~~~~------------~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 115 IKSIDA---GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY--SLDTR------------GKFILSIAYSPDGK 177 (321)
T ss_dssp EEEEEC---CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE--EEECS------------SSCEEEEEECTTSS
T ss_pred EEEEeC---CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE--EecCC------------CceEEEEEECCCCC
Confidence 665433 33478899999999999999999999999998876532 22222 22699999999999
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
+|++|+.||.|++||+++++.+..+.+|..+|.+++|+ |++++|++|+.|+.|++||++ .......+.+|...|.
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHASWVL 252 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETT----TCCEEEEECCCSSCEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECC----CcceeEEEcCCCCceE
Confidence 99999999999999999999999999999999999999 899999999999999999975 6677888999999999
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+++|+|++++|++++.|+.|++||+++ ...+..+.+|.. .
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~----------------------------------~~~~~~~~~h~~------~ 292 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGT----------------------------------RTCVHTFFDHQD------Q 292 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCSS------C
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC----------------------------------CEEEEEEcCCCC------c
Confidence 999999999999999999999999987 456677777763 3
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
++.++|+|++++|++++.||.|++||..
T Consensus 293 v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 293 VWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 4555789999999999999999999963
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-46 Score=324.02 Aligned_cols=309 Identities=17% Similarity=0.168 Sum_probs=241.1
Q ss_pred eeeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~ 111 (408)
..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.++..... ....+|...|.+++|+| ++++|++++.|+.|++
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 3577999999999999999 9999999999999999987755443 33345777999999999 7899999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
||+.+.......... .+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus 146 wd~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTD------------SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp EETTSCEEEEEECCC------------CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred EECCCCceEEEeccC------------CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 999864332222111 22347999999999999999999999999999 57788888999999999999
Q ss_pred ecCCCC-EEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 192 ADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 192 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
+ +++. +|++++.|+.|++||++...........+ +|...|.+++|+| ++++|++++.|+.|++||+++........
T Consensus 213 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 213 N-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp C-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred C-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 9 6666 99999999999999987433334555555 6999999999999 99999999999999999998854332211
Q ss_pred cccccccccceeecccccceeeccCCCccee-eeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLA-TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 348 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (408)
....... .....+. .+... ......+++|++++ +|+.||.|++||+.+++.+.
T Consensus 291 ~~~~~~~-----------------~~~~~~~~~~~p~-------~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 291 IHPHRQF-----------------QHLTPIKATWHPM-------YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp ECCBCCC-----------------TTSCCCCCEECSS-------SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred ccccccc-----------------ccccceEEeccCC-------CCceEEEecCCccc--ccCCCCeEEEEecCCCceee
Confidence 0000000 0000000 01000 01122467788888 88899999999999999999
Q ss_pred EEcc--CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 349 KLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 349 ~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
.+.+ |...+..++|+|++++|++++ ||.|++||+++
T Consensus 345 ~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 345 QLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9987 456778889999999999997 99999999875
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7e-46 Score=322.36 Aligned_cols=278 Identities=20% Similarity=0.327 Sum_probs=240.5
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|+|++.++++++.+....+|.... ...+.+|.+.|.+++|+|++++|++|+.|++|++||+.+...+..
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~--- 187 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--- 187 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC---
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---
Confidence 35899999999999998888777777543 467889999999999999999999999999999999988765543
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..+|...|.+++|+|++++|++++.|+.|++||+.++... ..+..+ ...|.++.++|++.+|++|+
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~--~~~~~h------------~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV--KTFTGH------------REWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECC------------SSCEEEEEECTTSSEEEEEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEeCC------------CccEEEEEECCCCCEEEEEc
Confidence 3466778999999999999999999999999999887653 333333 33799999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecC-------------------CCCEEEEecCCCeEEEEeccccccCCc
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-------------------TGHLIFSGSDDSLCKVWDRRCFISKGR 221 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (408)
.|+.|++||+.++++...+.+|...|.+++|+|. .+.+|++|+.|+.|++||++ .+.
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----~~~ 329 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGM 329 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TTE
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----CCc
Confidence 9999999999999999999999999999999942 16789999999999999975 677
Q ss_pred cceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee
Q 015371 222 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 301 (408)
Q Consensus 222 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
.+..+.+|...|.+++|+|++++|++++.|+.|++||+++ .+.+..
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~----------------------------------~~~~~~ 375 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----------------------------------KRCMKT 375 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT----------------------------------SCCCEE
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------CceEEE
Confidence 8889999999999999999999999999999999999977 455667
Q ss_pred eecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 302 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
+.+|... +.+++|+|++.+|++|+.||.|++|+++
T Consensus 376 ~~~h~~~------v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 376 LNAHEHF------VTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECCSSC------EEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EcCCCCc------EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 7777643 4455788999999999999999999863
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.5e-46 Score=313.58 Aligned_cols=281 Identities=12% Similarity=0.080 Sum_probs=221.5
Q ss_pred eeeEecCCccEEEeecCce--EEE----EEEecC-------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC
Q 015371 5 REVNYSGRGRFSAADSCHV--LSR----YLPVNG-------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK 71 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~--~~~----~~~~~~-------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 71 (408)
.+++|||||+++++++... +|. .+.... ......|...|.+++|+|++ .|++|+.||+|+|||+.+
T Consensus 34 ~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 34 EAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE 112 (344)
T ss_dssp EEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT
T ss_pred EEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC
Confidence 5899999999988766321 121 111110 12234567889999999985 688999999999999998
Q ss_pred CeeEEEe-cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc
Q 015371 72 NWKIQKD-IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS 150 (408)
Q Consensus 72 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (408)
++..... ....+|...|++++|+|++++|++++.|+.|++||+.+++. ...+.. |...|.+++|+
T Consensus 113 ~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~--~~~~~~------------h~~~V~~~~~~ 178 (344)
T 4gqb_B 113 NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRA------------HAAQVTCVAAS 178 (344)
T ss_dssp TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECC------------CSSCEEEEEEC
T ss_pred CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcC------------cCCceEEEEec
Confidence 7654432 23457888999999999999999999999999999998765 333333 34489999999
Q ss_pred CCCC-EEEEEecCCeEEEEECCCCcceeeec--CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee
Q 015371 151 TDGQ-ELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227 (408)
Q Consensus 151 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (408)
+++. .|++++.|+.|++||+++++....+. .|...+.+++|+|.++++|++|+.||.|++||++ .++.+..+.
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~ 254 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSA 254 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----C--CCEEEE
T ss_pred CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----CCcEEEEEc
Confidence 9875 78899999999999999998887764 4566799999997788899999999999999976 678888999
Q ss_pred cccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccc
Q 015371 228 GHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS 306 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
+|...|++++|+|++ ++|++++.|++|++||+++ ..+..+.+|.
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-----------------------------------~~~~~~~~H~ 299 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-----------------------------------SELFRSQAHR 299 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-----------------------------------CEEEEECCCS
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-----------------------------------CcEEEEcCCC
Confidence 999999999999998 5799999999999999987 2234556776
Q ss_pred ceeeEEEEEeeccccCCCc-EEEEeeCCCeEEEEECCCCc
Q 015371 307 VLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~ 345 (408)
. .+.+++|+|+++ +|++|+.||+|++|++.+..
T Consensus 300 ~------~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 300 D------FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp S------CEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred C------CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 3 344557888886 56789999999999997654
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-44 Score=310.88 Aligned_cols=291 Identities=16% Similarity=0.210 Sum_probs=249.1
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+... ..|...|.+++|+|++++|++++.||.|++||
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL---DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh---hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 568899999999999999999999999999999999988666543 45666899999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-----CeEEEEECCCCcc-----------ee
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKC-----------SL 177 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~-----------~~ 177 (408)
+.+++...... + ..++.+++|+|+++++++++.+ +.|.+||+..+.. ..
T Consensus 103 ~~~~~~~~~~~---~------------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 103 VSNGQCVATWK---S------------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp TTTCCEEEEEE---C------------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred CCCCcEEEEee---c------------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 98876543322 2 2269999999999999999998 9999999976542 33
Q ss_pred eecCcCC--CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEE
Q 015371 178 RIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 255 (408)
Q Consensus 178 ~~~~~~~--~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 255 (408)
.+..|.. .+.+++|+ +++++|++++.||.|++||++ ........+..|...|.+++|+|++++|++++.|+.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS---NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp EEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT---TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC---CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence 3445555 89999999 789999999999999999985 22677888889999999999999999999999999999
Q ss_pred EEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC-
Q 015371 256 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN- 334 (408)
Q Consensus 256 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg- 334 (408)
+||+++ ...+..+.... .+..++|+|+++++++++.++
T Consensus 244 v~d~~~----------------------------------~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 244 LVDVST----------------------------------LQVLKKYETDC-------PLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp EEETTT----------------------------------CCEEEEEECSS-------CEEEEEECSSSSEEEEEECCC-
T ss_pred EEECCC----------------------------------CceeeeecCCC-------CceeEEecCCCceEEEeecCCC
Confidence 999987 23344444221 223446888999999999988
Q ss_pred -------------eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 335 -------------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 335 -------------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++....
T Consensus 283 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 283 KDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred ceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998753
No 29
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-47 Score=333.31 Aligned_cols=346 Identities=12% Similarity=0.166 Sum_probs=249.4
Q ss_pred EecCCccEEEeecCceEEEEEEecCceee-ecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCC---CeeEEEecccc
Q 015371 8 NYSGRGRFSAADSCHVLSRYLPVNGPWKV-DGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDK---NWKIQKDIETK 82 (408)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~ 82 (408)
.|+|++..++.... |. ........+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +...... ...
T Consensus 34 ~f~~~~~~~~~~~~---w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~ 108 (437)
T 3gre_A 34 EFGPIQEIVRSPNM---GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-LTY 108 (437)
T ss_dssp GGCCCCCCCCCCCG---GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-EEE
T ss_pred hcCCcccccccccc---cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-eec
Confidence 46778877665541 11 111223456 78999999999999 999999999999999999876 3211111 122
Q ss_pred cceeeEEEEEeCCCCceEEEeecCcEEEEEECC---CCceeeeeeeeeeeeeeeecCCCCCccceEEEE--EcCCCCEEE
Q 015371 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVG---SSARESLANVTIHKGLDFSADGDEDEFGIFSVK--FSTDGQELV 157 (408)
Q Consensus 83 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~ 157 (408)
.|...|.+++|+|++++|++++.||.|++||+. .++............+.+.+. .+...+.++. +++++.+|+
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNF--GKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGG--SSCCCEEEEEEEECSSCEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCc--ccccCceEEEEEEcCCCCEEE
Confidence 467789999999999999999999999999995 343322222111112222111 1334577777 668999999
Q ss_pred EEecCCeEEEEECCCCcceeeecC--cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-cccCCeE
Q 015371 158 AAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGIT 234 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~ 234 (408)
+++.|+.|++||+++++.+..+.. |...|++++|+ +++++|++|+.||.|++||++ .+..+..+. .|...|.
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEE
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceE
Confidence 999999999999999999999987 89999999999 889999999999999999986 566777665 7788999
Q ss_pred EEEec----CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec--ccce
Q 015371 235 FIDSR----RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG--HSVL 308 (408)
Q Consensus 235 ~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 308 (408)
+++|+ |++.+|++++.||.|++||+++........... .......+.+....+ ....+.+ |.
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l------~~~~~~~~~~~-- 329 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD----EQPSMEHFLPIEKGL------EELNFCGIRSL-- 329 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS----SCCCGGGGSCBCSSG------GGCCCCCCCSG--
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC----CCCccceeccccccc------ccceecccccC--
Confidence 99555 568899999999999999998754332221100 000000000000000 0001122 22
Q ss_pred eeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc------------------------------------
Q 015371 309 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------------------------------------ 352 (408)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------------------------------ 352 (408)
..+.+++|+ ++++|++|+.||.|++||+.+++....+.+
T Consensus 330 ----~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 330 ----NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp ----GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred ----CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 223344666 679999999999999999999987777665
Q ss_pred -CCCCeeeeeEeCC--CCeEEeecCCCcEEEEe
Q 015371 353 -HNAPVRDCCWHPI--YPMLISSSWDCNIVRWE 382 (408)
Q Consensus 353 -~~~~v~~~~~~~~--~~~l~s~~~dg~v~iw~ 382 (408)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999995
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.3e-45 Score=317.52 Aligned_cols=293 Identities=13% Similarity=0.147 Sum_probs=242.6
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe------eEEEecccccceeeEEEEEeCCC----C---ceE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW------KIQKDIETKALRWTITDTSLSPD----Q---RFL 100 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~----~---~~l 100 (408)
..+.+|.+.|++++|+| ++|++|+.||.|++|++.++. ..... ..|...|.+++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH---FVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE---ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE---ecCCCcEEEEEEecccccCCccccEE
Confidence 56789999999999999 799999999999999998875 33332 356668999999999 9 999
Q ss_pred EEeecCcEEEEEECCCCceee---eeeeeeeeeeeeecCCCCC--ccceEEEEEc----CCCCE-EEEEecCCeEEEEEC
Q 015371 101 VYASICAIVNIVDVGSSARES---LANVTIHKGLDFSADGDED--EFGIFSVKFS----TDGQE-LVAAGSDNFIYVYDL 170 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~----~~~~~-l~~~~~dg~i~i~d~ 170 (408)
++++.||.|++|++.+++... ...+..+. .+ ...|.+++|+ |++++ |++++.||.|++||+
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLD---------SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSC---------TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccc---------cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999998765310 11122220 00 2479999999 99999 999999999999999
Q ss_pred CC------Cccee-----ee-------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec---c
Q 015371 171 QA------NKCSL-----RI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG---H 229 (408)
Q Consensus 171 ~~------~~~~~-----~~-------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~ 229 (408)
.+ ++.+. .+ ..|...|.+++|+ +++ +|++++.||.|++||++ ..+.+..+.. |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQHSM 229 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC--
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEEEeccccc
Confidence 98 66666 66 4588999999999 777 99999999999999976 5677888888 8
Q ss_pred ---cCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee
Q 015371 230 ---LEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 303 (408)
Q Consensus 230 ---~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
...|.+++|+|++++|++++.| +.|++||+++. +.+..+.
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------------~~~~~~~ 275 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------------ERIGSLS 275 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEEC
T ss_pred cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----------------------------------cccceec
Confidence 9999999999999999999999 99999999873 3334444
Q ss_pred c-------------ccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc------cC-----------
Q 015371 304 G-------------HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD------FH----------- 353 (408)
Q Consensus 304 ~-------------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~----------- 353 (408)
. |. ..+.+++|+|++++|++++.||.|++||+.+++.+..+. .|
T Consensus 276 ~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHS------SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp BC--------CCBSBS------SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred cCcccccccccccccC------CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 3 43 234455788899999999999999999999999999998 88
Q ss_pred ----CCCeeeeeEeCCC----------CeEEeecCCCcEEEEeeCCC
Q 015371 354 ----NAPVRDCCWHPIY----------PMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 354 ----~~~v~~~~~~~~~----------~~l~s~~~dg~v~iw~~~~~ 386 (408)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-44 Score=336.27 Aligned_cols=289 Identities=22% Similarity=0.282 Sum_probs=235.0
Q ss_pred eeecccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeE--EEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+|...|.+++|+|++++|++++.||.|++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 578999999999999875 79999999999999998764221 112234567779999999999999999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceee---ecCcCCCceE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR---IPAHKSDVNT 188 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~ 188 (408)
||+.++... ..+.. |...|.+++|+|++++|++++.|+.|++||......... ..+|...|.+
T Consensus 457 wd~~~~~~~--~~~~~------------h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 457 WDLAAGVST--RRFVG------------HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp EETTTTEEE--EEEEC------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred EECCCCcce--eEEeC------------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 999887553 23333 344799999999999999999999999999865533222 2468899999
Q ss_pred EEEecCCC--CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 189 VCFADETG--HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 189 l~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
++|+ +++ ..+++++.|++|++||++ ..+....+.+|...|++++|+|++++|++++.||.|++||+++.
T Consensus 523 ~~~~-~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---- 593 (694)
T 3dm0_A 523 VRFS-PNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---- 593 (694)
T ss_dssp EEEC-SCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT----
T ss_pred EEEe-CCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----
Confidence 9999 544 689999999999999975 66778889999999999999999999999999999999999873
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
+.+..+..+. .+.+++|+|++.++++++ ++.|++||+++++.
T Consensus 594 ------------------------------~~~~~~~~~~-------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 594 ------------------------------KKLYSLEANS-------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp ------------------------------EEEECCBCSS-------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred ------------------------------ceEEEecCCC-------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC
Confidence 3333333322 233457888888887765 56699999999988
Q ss_pred eEEEccCC-------------------CCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 347 VAKLDFHN-------------------APVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 347 ~~~~~~~~-------------------~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+..+..+. ..+++++|+|++++|++|+.||.|++|++.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 87775331 137889999999999999999999999985
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.8e-45 Score=309.68 Aligned_cols=283 Identities=14% Similarity=0.090 Sum_probs=218.0
Q ss_pred ceeeEecCCccEEEeecC------ceEEEEEEecC-------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcC
Q 015371 4 GREVNYSGRGRFSAADSC------HVLSRYLPVNG-------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~------~~~~~~~~~~~-------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~ 70 (408)
..+++|||||+++++++. +...+.+.... .....+|...|++++|+|++++ ++++.||+|+|||+.
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEIL 123 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC---
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeecc
Confidence 468999999999998875 33334443221 2345689999999999999864 567789999999998
Q ss_pred CCeeEEEe-cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE
Q 015371 71 KNWKIQKD-IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (408)
+++..... ....+|...|.+++|+|++++|++++.|+.|++||+.+++.. ..+..+ ...|.+++|
T Consensus 124 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~--~~~~~h------------~~~v~~v~~ 189 (357)
T 4g56_B 124 EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL--KSYNAH------------SSEVNCVAA 189 (357)
T ss_dssp -----CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE--EEECCC------------SSCEEEEEE
T ss_pred ccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCC------------CCCEEEEEE
Confidence 87544322 233467789999999999999999999999999999887653 233333 347999999
Q ss_pred cCCCC-EEEEEecCCeEEEEECCCCcceeee--cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee
Q 015371 150 STDGQ-ELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL 226 (408)
Q Consensus 150 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 226 (408)
++++. ++++++.|+.|++||++++++...+ ..|...+++++|+|.++.+|++|+.|+.|++||++ ..+....+
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----~~~~~~~~ 265 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NPDSAQTS 265 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS----CGGGCEEE
T ss_pred ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC----CCcEeEEE
Confidence 99875 7889999999999999998877655 45677899999996667899999999999999976 67788889
Q ss_pred ecccCCeEEEEecCCC-CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecc
Q 015371 227 MGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 305 (408)
Q Consensus 227 ~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
.+|...|++++|+|++ ++|++++.|++|++||+++ ++.+ ...+|
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~----------------------------------~~~~-~~~~H 310 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF----------------------------------SEVF-RDLSH 310 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS----------------------------------CEEE-EECCC
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC----------------------------------CcEe-EECCC
Confidence 9999999999999987 5799999999999999987 2222 23355
Q ss_pred cceeeEEEEEeeccccC-CCcEEEEeeCCCeEEEEECCCCce
Q 015371 306 SVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 306 ~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
.. .+.+++|+| ++++|++++.||.|++|++.+...
T Consensus 311 ~~------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 311 RD------FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SS------CEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CC------CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 53 234557887 799999999999999999976433
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=305.99 Aligned_cols=302 Identities=14% Similarity=0.156 Sum_probs=228.8
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCce------eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPW------KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~------~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 77 (408)
..+++|||||+++++++.+...++|...... ...+|.+.|.+++|+|++++||+|+.|++|++|++..+.. ..
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~ 97 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-EC 97 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-EE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-EE
Confidence 3579999999999999888877777665421 2368999999999999999999999999999999877632 22
Q ss_pred ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee-eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE-SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
.....+|...|.+++|+|++++|++++.|+.|++||+...... ....+. .|...|.+++|+|++++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN------------SHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC------------CCCSCEEEEEECSSSSCE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec------------CcCCCeEEEEECCCCCEE
Confidence 2344567779999999999999999999999999999775432 222222 234479999999999999
Q ss_pred EEEecCCeEEEEECCCCc--ceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC-----------Cccc
Q 015371 157 VAAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----------GRAN 223 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~ 223 (408)
++++.|+.|++||.++++ +...+.+|...|.+++|+ |++++|++++.|++|++||....... ...+
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 999999999999998775 446788999999999999 89999999999999999997421111 1122
Q ss_pred eeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee
Q 015371 224 GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 302 (408)
Q Consensus 224 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
..+.+ |...|.+++|+|++..|++++.|+.|++|+............ .......
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-------------------------~~~~~~~ 299 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF-------------------------SLTAHLH 299 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE-------------------------EEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE-------------------------EEEeeec
Confidence 33444 888999999999999999999999999999876321111000 0001122
Q ss_pred ecccceeeEEEEEeeccccCCC-cEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 303 KGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
.+|.. .+.+++|+|++ .+|++|+.||.|++|++.+++....+
T Consensus 300 ~~h~~------~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 300 QAHSQ------DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSSSS------CEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccccC------cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 34542 34455788887 59999999999999999888765544
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-44 Score=311.93 Aligned_cols=295 Identities=13% Similarity=0.146 Sum_probs=242.4
Q ss_pred eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe--eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
.+..|.+.|++++|+|++++||+++.|+.|++|++.+++ .+. ....|...|.+++|+|++++|++++.||.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 456799999999999999999999999999999998875 333 334566789999999999999999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc----eeeecCcCCCceE
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC----SLRIPAHKSDVNT 188 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~ 188 (408)
|+.+++.........+ ...|.+++|+|++++|++++.|+.|++||+..++. ......|...|.+
T Consensus 80 d~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRI------------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp EEETTEEEEEEECCCC------------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred ECCCCeeeeeEEeecC------------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 9987764433333323 33799999999999999999999999999988763 2233678999999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEecccc--------------ccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeE
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCF--------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 254 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 254 (408)
++|+ +++++|++++.||.|++||++.. ...+..+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9999 78999999999999999996421 12456777788899999999999999999999999999
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 334 (408)
++||+++ .+.+..+..+... +..++|+|++.++++| .|+
T Consensus 227 ~i~d~~~----------------------------------~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 227 CLADADK----------------------------------KMAVATLASETLP------LLAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp EEEEGGG----------------------------------TTEEEEEECSSCC------EEEEEEEETTEEEEEE-TTS
T ss_pred EEEECCC----------------------------------CceeEEEccCCCC------eEEEEEecCCCEEEEE-eCC
Confidence 9999987 3455666666532 3344677889988888 899
Q ss_pred eEEEEECCC--Cce--------------------------------e------EEE-ccCCCCeeeeeEe-CCC---CeE
Q 015371 335 SVYIYDLVS--GAQ--------------------------------V------AKL-DFHNAPVRDCCWH-PIY---PML 369 (408)
Q Consensus 335 ~i~vwd~~~--~~~--------------------------------~------~~~-~~~~~~v~~~~~~-~~~---~~l 369 (408)
.|++|++.+ ++. . ..+ .+|..+|++++|+ +++ ++|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l 345 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 345 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence 999999987 421 0 223 4899999999976 666 899
Q ss_pred EeecCCCcEEEEeeCCC
Q 015371 370 ISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 370 ~s~~~dg~v~iw~~~~~ 386 (408)
+|++.||.|++|++.++
T Consensus 346 ~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp EEEETTSEEEEEEHHHH
T ss_pred EEecCCCceEEEEecCh
Confidence 99999999999999764
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-44 Score=299.92 Aligned_cols=252 Identities=19% Similarity=0.284 Sum_probs=212.4
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..+|...|.+++|+|++++|++++.||.|++||+.++... ..+..+ ..+|.+++|+|++++|++|+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~~~------------~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVT------------ETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEECC------------SSCEEEEEEEGGGTEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEeecc------------CCcEEEEEEeCCCCEEEEEC
Confidence 4467778999999999999999999999999999887643 333333 33799999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
.|+.|++||+.+++.+..+.+|...|.+++|+ |++.+|++|+.|++|++||++ ........+.+|...|.+++|+|
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG---GTTEEEEEECCCCSCEEEEEECT
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC---CCcchhhhhcccCCcEEEEEECC
Confidence 99999999999999999999999999999999 889999999999999999985 22355667889999999999999
Q ss_pred -CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee-ecccceeeEEEEEeec
Q 015371 241 -DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSP 318 (408)
Q Consensus 241 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (408)
++.+|++++.|+.|++||++... ....+ .++....... .+
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~----------------------------------~~~~~~~~~~~~v~~~--~~-- 192 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQST----------------------------------PNFTLTTGQERGVNYV--DY-- 192 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSS----------------------------------CSEEEECCCTTCEEEE--EE--
T ss_pred CCCCEEEEEeCCCeEEEEECCCCC----------------------------------ccceeccCCcCcEEEE--EE--
Confidence 67899999999999999997632 11222 2222211111 11
Q ss_pred cccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 319 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 319 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
...+++.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.||.|++||+.+.+.
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 2234788999999999999999999999999999999999999999999999999999999999987543
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4e-44 Score=303.84 Aligned_cols=277 Identities=18% Similarity=0.272 Sum_probs=232.8
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee-EEEec
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK-IQKDI 79 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~ 79 (408)
..+++|+|||+++++++.+...++|.... ...+..|...|.+++|+|++++|++|+.|+.|++|++.+... .....
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 137 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE
Confidence 35799999999999999988888887544 346778999999999999999999999999999999987532 12223
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
...+|...|.++.|++++. +++++.|+.|++||+.+++.. ..+.. |...|.+++|+|+++++++|
T Consensus 138 ~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~--~~~~~------------h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 138 ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT--TTFTG------------HTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE--EEECC------------CSSCEEEEEECTTSSEEEEE
T ss_pred EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE--EEEcC------------CCCceEEEEECCCCCEEEEE
Confidence 3456777899999998876 889999999999999887653 23333 34479999999999999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee--cccCCeEEEE
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFID 237 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~ 237 (408)
+.|+.|++||+++++....+.+|...|++++|+ |++++|++|+.||+|++||++ ....+..+. .+...|.+++
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCEEEEE
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECC----CCcEEEEEccCCcccceEEEE
Confidence 999999999999999999999999999999999 899999999999999999986 444444443 2335799999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
|+|++++|++++.|+.|++||+.+ ...+..+.+|... +.+
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~----------------------------------~~~~~~~~~h~~~------v~~ 317 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALK----------------------------------ADRAGVLAGHDNR------VSC 317 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSSC------EEE
T ss_pred ECCCCCEEEEECCCCeEEEEEccc----------------------------------CcEeeEeecCCCc------EEE
Confidence 999999999999999999999887 3556677777743 344
Q ss_pred ccccCCCcEEEEeeCCCeEEEEE
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
++|+|++.+|++|+.||.|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 57899999999999999999997
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-44 Score=300.51 Aligned_cols=289 Identities=16% Similarity=0.230 Sum_probs=244.2
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
...+.+|.+.|++++| |++++|++|+.||.|++||+.++....... .|...|.+++|+|++++|++++.||.+++|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY---TGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE---ECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee---cCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3568899999999999 999999999999999999998876554433 445689999999999999999999999999
Q ss_pred ECCCCce-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 113 DVGSSAR-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 113 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
++..... .....+. .|...|.++.| +++++++++.|+.|++|| .++....+..|...+.+++|
T Consensus 87 ~~~~~~~~~~~~~~~------------~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 87 PLFATSGEDPLYTLI------------GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp ETTCCTTSCC-CEEC------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred EeeecCCCCcccchh------------hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence 9976532 1122222 24447999999 577999999999999999 67778888899999999999
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
.|++++++++++.||.|++|| .......+.. |...+.+++|+|++. +++++.||.|++||+++
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~--------- 214 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT--------- 214 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT---------
T ss_pred ccCCCCEEEEEECCCCEEEEe------cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc---------
Confidence 977999999999999999999 3455566666 899999999999998 99999999999999987
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
.+.+..+..|... +..++|+|++ .|++++.||.|++||+.+++.+..+
T Consensus 215 -------------------------~~~~~~~~~~~~~------i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 215 -------------------------GDVLRTYEGHESF------VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp -------------------------CCEEEEEECCSSC------EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred -------------------------hhhhhhhhcCCce------EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 4556666666633 3445788888 6899999999999999999999999
Q ss_pred ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 351 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
..|...|++++|+|+++ +++++.||.|++|++.+++...
T Consensus 263 ~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 263 TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 99999999999999998 6678999999999998765543
No 38
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.4e-45 Score=311.95 Aligned_cols=302 Identities=17% Similarity=0.237 Sum_probs=238.5
Q ss_pred eecccCceeEEEEcCC----CCeEEEEeCCCcEEEEEcCCCeeEEEeccc--ccceeeEEEEEeCCC----CceEEEeec
Q 015371 36 VDGMNSRVYTSQFSND----GSFFVAASQESNIKVYNVDKNWKIQKDIET--KALRWTITDTSLSPD----QRFLVYASI 105 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~l~~~~~ 105 (408)
..+|.+.|++++|+|+ ...+++++.++.|++|++.++..+...... ..|...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4489999999999984 455666666779999999977655443322 235568999999998 679999999
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeee---cC
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI---PA 181 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~ 181 (408)
||.|++||+.+++.. ..+..+ ..+|.+++|+| ++++|++++.||.|++||+++++.+..+ ..
T Consensus 94 dg~i~v~d~~~~~~~--~~~~~~------------~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 94 RGIIRIINPITMQCI--KHYVGH------------GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp TCEEEEECTTTCCEE--EEEESC------------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred CCEEEEEEchhceEe--eeecCC------------CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 999999999887653 223333 33799999999 9999999999999999999999988887 68
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce----------------------------eeecccCCe
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG----------------------------VLMGHLEGI 233 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~i 233 (408)
|...|.+++|+ +++++|++++.||.|++||++. .+... ....|...|
T Consensus 160 ~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 160 HRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINS----KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCS----HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred ccCceeEEEEC-CCCCEEEEecCCCCEEEEECCC----CccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 99999999999 7999999999999999999862 22222 223489999
Q ss_pred EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEE
Q 015371 234 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 313 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
.+++|+ +++|++++.|+.|++||+++.......... .......+..+..|..
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------ 286 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP--------------------SESNVTILGRFDYSQC------ 286 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT--------------------TCCCEEEEEEEECSSC------
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc--------------------CCcchheeccccccCC------
Confidence 999998 779999999999999999875432111000 0001123444555542
Q ss_pred EEeeccccCC--CcEEEEeeCCCeEEEEECCCCce----eEEEccC--CCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 314 CYFSPEYSTA--QKYIYTGSSDNSVYIYDLVSGAQ----VAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 314 ~~~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
.+..++|+|+ +++|++|+.||.|++||+.+++. ...+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 287 ~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 3445678888 99999999999999999998763 4477777 7899999999999999999999999999985
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.8e-44 Score=312.29 Aligned_cols=318 Identities=12% Similarity=0.104 Sum_probs=250.5
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
.+++|+|+|+++++++.+....++.... ...+.+| ..+....|+|++++||+|+.||.|++||+.++..... .
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~ 135 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI---D 135 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE---T
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee---c
Confidence 3789999999999888777667766543 2344455 4556668899999999999999999999988755442 3
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 161 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (408)
..|...|.+++|+|++++|++++.|+.|++||+.+++.. ..+.. |...|.+++|+|++++|++++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~------------h~~~v~~~~~~~~~~~l~s~~~ 201 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIG------------HRATVTDIAIIDRGRNVLSASL 201 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--EEEEC------------CSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--eEEcC------------CCCcEEEEEEcCCCCEEEEEcC
Confidence 466779999999999999999999999999999877643 22333 3447999999999999999999
Q ss_pred CCeEEEEECCCCcceeeecC---cCCCceE---------------------EEEecCCCCEEEEecCCCeEEEEeccccc
Q 015371 162 DNFIYVYDLQANKCSLRIPA---HKSDVNT---------------------VCFADETGHLIFSGSDDSLCKVWDRRCFI 217 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~---~~~~v~~---------------------l~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (408)
|+.|++||+++++.+..+.. +...+.+ ++|+ +++++|++++.||.|++||++
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~--- 277 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVF--- 277 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETT---
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECC---
Confidence 99999999999988888764 3344444 4455 788999999999999999986
Q ss_pred cCCccceee-ecccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCC
Q 015371 218 SKGRANGVL-MGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 295 (408)
Q Consensus 218 ~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (408)
.......+ ..|...|.+++|+|+++ +|++++.||.|++||+++..
T Consensus 278 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-------------------------------- 324 (420)
T 3vl1_A 278 -SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-------------------------------- 324 (420)
T ss_dssp -TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------------------------------
T ss_pred -CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--------------------------------
Confidence 44444444 45889999999999999 99999999999999998732
Q ss_pred Ccceeeeecc-cceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC---------ceeEEEccCCCCeeeeeEeCC
Q 015371 296 DQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---------AQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~ 365 (408)
.++..+..+ ..... .+ +.+++++|++++.||.|++||+... .....+..|...|.+++|+|+
T Consensus 325 -~~~~~~~~~~~~~v~---~~----~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 325 -CPVGEFLINEGTPIN---NV----YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp -SCSEEEEESTTSCEE---EE----EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred -CchhhhhccCCCCce---EE----EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 223444442 22111 11 2235889999999999999998773 223345678899999999999
Q ss_pred CC---eEEeecCCCcEEEEeeCC
Q 015371 366 YP---MLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 366 ~~---~l~s~~~dg~v~iw~~~~ 385 (408)
++ .|++++.+|.+.+|+++.
T Consensus 397 ~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 397 DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCcceEEEEcCCceEEEEeccC
Confidence 99 788888899999999865
No 40
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=308.26 Aligned_cols=315 Identities=17% Similarity=0.252 Sum_probs=242.4
Q ss_pred EEEEEecCceeeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEEEecc----------cccceeeEEEEEe
Q 015371 25 SRYLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIE----------TKALRWTITDTSL 93 (408)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----------~~~~~~~v~~~~~ 93 (408)
+.+........+.+|.+.|++++|+| ++++||+|+.||.|++|++.++........ ...|...|.+++|
T Consensus 28 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 107 (408)
T 4a11_B 28 LGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107 (408)
T ss_dssp HTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE
T ss_pred eccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE
Confidence 33444455567789999999999999 999999999999999999987643332211 1247779999999
Q ss_pred CC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC---CCEEEEEecCCeEEEEE
Q 015371 94 SP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSDNFIYVYD 169 (408)
Q Consensus 94 ~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d 169 (408)
+| ++.+|++++.||.|++||+.+++....... ...+.++.+++. +.++++++.++.|++||
T Consensus 108 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF---------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC---------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEeCCCeEEEeeCCCCccceeccC---------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 99 788999999999999999998765433321 115889999884 45999999999999999
Q ss_pred CCCCcceeeecCcCCCceEEEEecCCCC-EEEEecCCCeEEEEecccccc------------CCccceeeecccCCeEEE
Q 015371 170 LQANKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFIS------------KGRANGVLMGHLEGITFI 236 (408)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~i~~~ 236 (408)
+++++.+..+..|...|.+++|+ |++. +|++++.||.|++||++.... ..........|...|.++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999999999999999999999 5555 799999999999999863210 111122236788999999
Q ss_pred EecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
+|+|++++|++++.||.|++||+++........ .+..........+
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~ 297 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY----------------------------------GKVCNNSKKGLKF 297 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCC----------------------------------CCCCCCCSSCCCC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceecc----------------------------------cccccccccccee
Confidence 999999999999999999999998854322110 0000000000011
Q ss_pred eccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 317 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
.... ..+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++...+..+
T Consensus 298 ~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 298 TVSC-GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EECC-SSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EEec-CCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 1111 235567777889999999999999999999999999999999999999999999999999999876543
No 41
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=306.49 Aligned_cols=298 Identities=14% Similarity=0.197 Sum_probs=232.8
Q ss_pred eeecccCceeEEEEcCCCCeE-EEEeC---CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC---CceEEEeecCc
Q 015371 35 KVDGMNSRVYTSQFSNDGSFF-VAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICA 107 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg 107 (408)
.+.+|.+.|.+++|+|++..+ ++|+. |+.|++|++.++...... ...|...|.+++|+|+ +++|++++.||
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 456899999999999999655 45655 899999999987544332 2256668999999998 69999999999
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEE------EcCCCCEEEEEecCCeEEEEECCCCc-ceeeec
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVK------FSTDGQELVAAGSDNFIYVYDLQANK-CSLRIP 180 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 180 (408)
.|++||+.+++. ....+.. |...|.++. |+|++++|++++.||.|++||+.+++ .+..+.
T Consensus 91 ~i~iwd~~~~~~-~~~~~~~------------~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 91 NLHIWNLEAPEM-PVYSVKG------------HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp CEEEECTTSCSS-CSEEECC------------CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred eEEEEeCCCCCc-cEEEEEe------------cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 999999987751 1222333 344799995 46899999999999999999999887 677776
Q ss_pred CcCC----CceEEEEec---CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC---CCCeEEEeec
Q 015371 181 AHKS----DVNTVCFAD---ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR---DGRYFISNGK 250 (408)
Q Consensus 181 ~~~~----~v~~l~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~ 250 (408)
.|.. .+.+++|.+ ++++++++++.||.|++||++ ..+. .....|...|.+++|+| ++++|++++.
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 5554 899999432 889999999999999999975 3333 44567889999999999 9999999999
Q ss_pred CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCc-EEEE
Q 015371 251 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYT 329 (408)
Q Consensus 251 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~ 329 (408)
||.|++||+++....... ....+.+|.. .+.+++|+|+++ +|++
T Consensus 233 dg~i~i~d~~~~~~~~~~-----------------------------~~~~~~~~~~------~v~~~~~~~~~~~~l~~ 277 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGF-----------------------------ASVSEKAHKS------TVWQVRHLPQNRELFLT 277 (357)
T ss_dssp TTEEEEEEEEEEETTTEE-----------------------------EEEEEECCSS------CEEEEEEETTEEEEEEE
T ss_pred CCeEEEEeCcCCCcccce-----------------------------eeeccCCCcC------CEEEEEECCCCCcEEEE
Confidence 999999999873221110 0112234542 334457888888 8999
Q ss_pred eeCCCeEEEEECCCC-------------------ceeEEEccCCCCeeeeeEeCCCCeEE-eecCCCcEEEEeeCCCC
Q 015371 330 GSSDNSVYIYDLVSG-------------------AQVAKLDFHNAPVRDCCWHPIYPMLI-SSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 330 ~~~dg~i~vwd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~~ 387 (408)
++.||.|++||++++ +.+..+..|...|++++|+|++++|+ +++.||.|++|++....
T Consensus 278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999999999754 45677889999999999999999988 89999999999998753
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-43 Score=303.30 Aligned_cols=286 Identities=21% Similarity=0.305 Sum_probs=227.9
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC---ceeeeccc------------------CceeEEEEcCCCCeEEEEeCCCc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMN------------------SRVYTSQFSNDGSFFVAASQESN 63 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~------------------~~v~~~~~s~~~~~l~t~~~dg~ 63 (408)
.+++|||||++++++... ...++.... ...+.+|. ..|.+++|+|+|++||+|+.|+.
T Consensus 68 ~~v~fspdg~~la~g~~~-~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 68 CCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp CEEEECTTSSEEEEECBS-CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEcCC-cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 589999999999987643 334444322 22333332 34999999999999999999999
Q ss_pred EEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccc
Q 015371 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFG 143 (408)
Q Consensus 64 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (408)
|++||+.+++.+.. ..+|...|.+++|+|++++|++++.|+.|++||+.+++...... . ...
T Consensus 147 i~iwd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~-------------~~~ 208 (393)
T 1erj_A 147 IRIWDIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--I-------------EDG 208 (393)
T ss_dssp EEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-------------SSC
T ss_pred EEEEECCCCcEEEE---EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--c-------------CCC
Confidence 99999998865543 34566789999999999999999999999999998876533221 1 125
Q ss_pred eEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeee-------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccc
Q 015371 144 IFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 215 (408)
Q Consensus 144 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (408)
+.+++|+| ++++|++|+.|+.|++||+++++.+..+ .+|...|.+++|+ +++.+|++|+.|+.|++||++.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCC
Confidence 99999999 8999999999999999999998877666 5789999999999 8999999999999999999863
Q ss_pred ccc--------CCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeeccccc
Q 015371 216 FIS--------KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 287 (408)
Q Consensus 216 ~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (408)
... .......+.+|...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-------------------------- 341 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-------------------------- 341 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence 211 1334567788999999999999999999999999999999987
Q ss_pred ceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 288 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
+..+..+.+|......+.......++|++++|++|+.||.|++|++...
T Consensus 342 --------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 --------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp --------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred --------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 4566777888755444433333357788999999999999999998543
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.3e-43 Score=322.32 Aligned_cols=361 Identities=16% Similarity=0.169 Sum_probs=268.8
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEe-------cCceeeecccCc-eeEEEEcC--CCCeEEEEeCCCcEEEEEcCCCe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPV-------NGPWKVDGMNSR-VYTSQFSN--DGSFFVAASQESNIKVYNVDKNW 73 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~-------~~~~~l~~h~~~-v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~ 73 (408)
..+++|||||++++.++... ..++.. .....+.+|.+. |++++|+| ++++||+|+.||.|++|++.++.
T Consensus 21 v~~~~~spdg~~l~~~~~~~-v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CCCCEEETTTTEEEEEETTE-EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred eeEEEECCCCCEEEEecCCe-EEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence 46899999999888766443 334433 344678899999 99999999 99999999999999999997540
Q ss_pred -----eEEEecccccceeeEEEEEeCCCCceEEEeecC----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccce
Q 015371 74 -----KIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGI 144 (408)
Q Consensus 74 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 144 (408)
..........|...|.+++|+|++++|++++.+ +.|++||. ++. ...+.. |...|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~--~~~~~~------------~~~~v 163 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNS--LGEVSG------------HSQRI 163 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCE--EEECCS------------CSSCE
T ss_pred ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCc--ceeeec------------CCccE
Confidence 111122334466689999999999999999987 78999883 222 222222 44479
Q ss_pred EEEEEcCCCC-EEEEEecCCeEEEEECCCCcceeeecCcCC---CceEEEEecCC-CCEEEEecCCCeEEEEeccccccC
Q 015371 145 FSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 145 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~l~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
.+++|+|+++ .+++++.|+.|++||+.+++.+..+..|.. .|.+++|+ |+ +++|++++.||.|++||++ .
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~ 238 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----S 238 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----T
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----C
Confidence 9999999998 899999999999999999999999999999 99999999 77 9999999999999999975 6
Q ss_pred Cccceee-e---cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc-------ccc-------------
Q 015371 220 GRANGVL-M---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL-------RDY------------- 275 (408)
Q Consensus 220 ~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~------------- 275 (408)
++.+..+ . .|...|.++.|+ ++++|++++.|+.|++||+++........... ...
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC
Confidence 6777777 5 899999999999 99999999999999999998754332211110 000
Q ss_pred -----cccce-------------------------------------------------eecccccceeeccC-------
Q 015371 276 -----DWDYR-------------------------------------------------WMEYPSYARRLKHP------- 294 (408)
Q Consensus 276 -----~~~~~-------------------------------------------------~~~~~~~~~~~~~~------- 294 (408)
.|+.. .+.+......+...
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKV 397 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEE
Confidence 00000 00000000000000
Q ss_pred --------------------------------------C-----------------------------Ccceeeeecccc
Q 015371 295 --------------------------------------H-----------------------------DQSLATYKGHSV 307 (408)
Q Consensus 295 --------------------------------------~-----------------------------~~~~~~~~~~~~ 307 (408)
. ...+..+.....
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc
Confidence 0 000111100000
Q ss_pred e------eeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc-CCCCeeeeeEeC----------CCCeEE
Q 015371 308 L------RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-HNAPVRDCCWHP----------IYPMLI 370 (408)
Q Consensus 308 ~------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~ 370 (408)
. ......+.+++|+|++++|++++.||.|++||+.+++.+..+.+ |...|++++|+| ++++|+
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEE
Confidence 0 00012345668999999999999999999999999999999888 999999999999 999999
Q ss_pred eecCCCcEEEEeeCCCC
Q 015371 371 SSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 371 s~~~dg~v~iw~~~~~~ 387 (408)
+++.||.|++|++.++.
T Consensus 558 ~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp EEETTSCEEEEESSCTT
T ss_pred EEcCCCcEEEEECCCCc
Confidence 99999999999998864
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=316.21 Aligned_cols=297 Identities=15% Similarity=0.256 Sum_probs=242.3
Q ss_pred ccCceeEEEEcCCCC-eEEEE----------eCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc
Q 015371 39 MNSRVYTSQFSNDGS-FFVAA----------SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (408)
Q Consensus 39 h~~~v~~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 107 (408)
+...|.+++|+|+++ +||+| +.|+.|++|++.++..... .....|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 345799999999987 99999 8899999999987643211 22234666899999999999999999999
Q ss_pred EEEEEECCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCc------ceee
Q 015371 108 IVNIVDVGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK------CSLR 178 (408)
Q Consensus 108 ~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~ 178 (408)
.|++|++.+.. ......+.. |...|.+++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSN------------HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCC------------SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred eEEEeecccccccccchhhccC------------CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 99999998721 112222222 4448999999998 8999999999999999998876 3332
Q ss_pred ---ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc------cCCeEEEEecCCC-CeEEEe
Q 015371 179 ---IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDG-RYFISN 248 (408)
Q Consensus 179 ---~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~ 248 (408)
+..|...|.+++|+|..+.+|++++.||.|++||++ ..+....+..+ ...|.+++|+|++ .+++++
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 367899999999994448999999999999999976 56666666665 7899999999997 689999
Q ss_pred ecCC---eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee-cccceeeEEEEEeeccccC-C
Q 015371 249 GKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYST-A 323 (408)
Q Consensus 249 ~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-~ 323 (408)
+.|+ .|++||+++.. ..+..+. +|.. .+.+++|+| +
T Consensus 234 ~~d~~~~~i~~~d~~~~~---------------------------------~~~~~~~~~~~~------~v~~~~~s~~~ 274 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNAN---------------------------------TPLQTLNQGHQK------GILSLDWCHQD 274 (416)
T ss_dssp ECCSSSCCCCEEETTSTT---------------------------------SCSBCCCSCCSS------CEEEEEECSSC
T ss_pred ECCCCCceEEEEeCCCCC---------------------------------CCcEEeecCccC------ceeEEEeCCCC
Confidence 9998 99999998732 2233344 4542 234457888 8
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCC-CeEEeecCCCcEEEEeeCCCCCCCc
Q 015371 324 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY-PMLISSSWDCNIVRWEIPGIGEAPL 391 (408)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~iw~~~~~~~~~~ 391 (408)
+++|++++.||.|++||+.+++.+..+..|...|++++|+|++ .+|++++.||.|++|++........
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp SSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred CCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 9999999999999999999999999999999999999999999 7999999999999999988765443
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-43 Score=348.65 Aligned_cols=376 Identities=17% Similarity=0.194 Sum_probs=291.4
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcC--CCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
..+++|||||+++++++.+....+|.... ...+.+|.+.|.+++|+| ++.++++|+.|+.|++||+.++......
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 739 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence 36899999999999988888778887654 346789999999999999 5568999999999999999998766543
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeee---------------eeeeeeec--------
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTI---------------HKGLDFSA-------- 135 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~---------------~~~~~~~~-------- 135 (408)
.+|...|.+++|+|++++|++++.||.|++||+.+++......... .....+.+
T Consensus 740 ---~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 740 ---FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp ---CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred ---cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 3566689999999999999999999999999998765432221100 00001111
Q ss_pred ------------------CCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCC
Q 015371 136 ------------------DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 197 (408)
Q Consensus 136 ------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 197 (408)
....|...|.+++|+|+++.+++++.+|.|++||+.++..+..+.+|...|.+++|+ +++.
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~ 895 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGS 895 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCC
Confidence 112567789999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEecCCCeEEEEecccc-------------------------------------------------------------
Q 015371 198 LIFSGSDDSLCKVWDRRCF------------------------------------------------------------- 216 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~------------------------------------------------------------- 216 (408)
+|++++.||.|++||++..
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 9999999999999996421
Q ss_pred --------------ccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccc--ccccccc--
Q 015371 217 --------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR--LRDYDWD-- 278 (408)
Q Consensus 217 --------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~-- 278 (408)
...+.....+.+|...|.+++|+|++++|++++.||.|++||+.+.......... .....+.
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 1055 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD 1055 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSS
T ss_pred EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence 0112333445678899999999999999999999999999999886543221110 0000000
Q ss_pred ce--eecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCC
Q 015371 279 YR--WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 356 (408)
Q Consensus 279 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 356 (408)
.. ..........+....++....+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+.+|.+.
T Consensus 1056 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~------~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~ 1129 (1249)
T 3sfz_A 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQG------TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC 1129 (1249)
T ss_dssp SEEEEEESSSEEEEEETTTTCCCEEEECCSS------CCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSC
T ss_pred CcEEEEECCCcEEEEECCCCceeEEEcccCC------cEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCc
Confidence 00 011111222333344555556666653 2445578999999999999999999999999999999999999
Q ss_pred eeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 357 VRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
|++++|+|++++|++++.||.|++||+.+++..
T Consensus 1130 v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp EEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 999999999999999999999999999887653
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.2e-44 Score=305.89 Aligned_cols=297 Identities=14% Similarity=0.091 Sum_probs=219.7
Q ss_pred CceeEEEEcCCCCeEEEEeCCC-------cEEEEEcCCCeeE-------EEecccccceeeEEEEEeCCCCceEEEe---
Q 015371 41 SRVYTSQFSNDGSFFVAASQES-------NIKVYNVDKNWKI-------QKDIETKALRWTITDTSLSPDQRFLVYA--- 103 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg-------~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~--- 103 (408)
-+|+|++|+||+++||+|+.+. .|++|++...... ........+...|.+++++ ++.++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999997643 4999998765221 1122344555567777664 4555554
Q ss_pred --------ecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe--cCCeEEEEECCCC
Q 015371 104 --------SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQAN 173 (408)
Q Consensus 104 --------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~ 173 (408)
+.|+.+++|++......... ..... + .....+...+.+++|+|||+++++++ .|+.|++||++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEF-LTSVD---F-DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEE-EEEEC---S-SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEE-eeeec---e-eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 45778999998765432111 11100 0 01122334588999999999987654 6899999999999
Q ss_pred cceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccc--eeeecccCCeEEEEecCCCCeEEEeecC
Q 015371 174 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN--GVLMGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 174 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
+++..+. |...|.+++|+ |+++++++++.++. ++|+.. .+... .....|...|.+++|+|+++++++++.|
T Consensus 168 ~~~~~~~-~~~~V~~v~fs-pdg~~l~s~s~~~~-~~~~~~----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d 240 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFS-TDGKVVAYITGSSL-EVISTV----TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK 240 (365)
T ss_dssp EEEEEEE-CSSCCCEEEEC-TTSSEEEEECSSCE-EEEETT----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred cEEEEeC-CCCceEEEEEc-cCCceEEeccceeE-EEEEec----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence 9888876 77889999999 89999999986654 555532 33332 3455688899999999999999999988
Q ss_pred C----eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEE
Q 015371 252 Q----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327 (408)
Q Consensus 252 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 327 (408)
+ .+++|++...... ......+.+|.. .+.+++|+|||++|
T Consensus 241 ~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~~~~------~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTS------------------------------VLRSKQVTNRFK------GITSMDVDMKGELA 284 (365)
T ss_dssp SSCCEEEEEEEEETTEEE------------------------------EEEEEEEESSCS------CEEEEEECTTSCEE
T ss_pred CcceeEEeecccccceec------------------------------ceeeeeecCCCC------CeEeEEECCCCCce
Confidence 7 5788887652110 011233444442 34456899999999
Q ss_pred EEeeCCCeEEEEECCCCceeEEE-ccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 328 YTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
|+|+.|+.|+|||+++++++..+ .+|..+|++++|+|||++|+|+|.|++|+||+++...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 99999999999999999999886 7899999999999999999999999999999997543
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-44 Score=319.50 Aligned_cols=294 Identities=14% Similarity=0.080 Sum_probs=218.0
Q ss_pred eeecccCceeEEEEcCC------CCeEEEEeCCCcEEEEEcCCCeeE-----E---EecccccceeeEEEEEeCCCCceE
Q 015371 35 KVDGMNSRVYTSQFSND------GSFFVAASQESNIKVYNVDKNWKI-----Q---KDIETKALRWTITDTSLSPDQRFL 100 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~------~~~l~t~~~dg~i~iw~~~~~~~~-----~---~~~~~~~~~~~v~~~~~~~~~~~l 100 (408)
.+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... . .......|...|++++|++++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 46788899999999997 579999999999999999865321 0 011234566789999999864 79
Q ss_pred EEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEE--EEcCCC-CEEEEEecCCeEEEEECCCCccee
Q 015371 101 VYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSV--KFSTDG-QELVAAGSDNFIYVYDLQANKCSL 177 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~ 177 (408)
++|+.||+|++||+.++... ...+.. |..+|.++ .|++++ .+|++|+.|++|++||++++++..
T Consensus 281 asgs~DgtV~lWD~~~~~~~-~~~~~~------------H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~ 347 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVP-SFYDQV------------HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347 (524)
T ss_dssp EEEETTSEEEEEETTBCSSC-SEEEEC------------SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred EEEeCCCEEEEEECCCCCCc-eEEeec------------ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence 99999999999999865321 122233 34479999 578887 899999999999999999988877
Q ss_pred eecCcCC--CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEE
Q 015371 178 RIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 255 (408)
Q Consensus 178 ~~~~~~~--~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 255 (408)
.+.+|.. .|.+++|+ |++..+++++.|++|++||++ .......+.+|.+.|++++|+|++++|++|+.||+|+
T Consensus 348 ~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp EEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred ccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 7776653 58899999 788899999999999999986 5666677889999999999999999999999999999
Q ss_pred EEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCe
Q 015371 256 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 335 (408)
Q Consensus 256 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 335 (408)
+||+... .+........ ......++..+|+|+++.+.. ..+
T Consensus 423 lwd~~~~-----------------------------------~~~~~~~~~~-~~~~~~v~~v~~sp~g~~~~~-~~~-- 463 (524)
T 2j04_B 423 ITNAARR-----------------------------------LLHGIKNSSA-TQKSLRLWKWDYSIKDDKYRI-DSS-- 463 (524)
T ss_dssp CCBSCSS-----------------------------------TTTCC-------CCCCEEEECBCCSSSCEEEE-CCC--
T ss_pred EEechHh-----------------------------------hccccccCcc-ceeeeEEEEeccCCCCCeEEc-cCC--
Confidence 9997651 1111110000 000123467789999985532 222
Q ss_pred EEEEECC-CCceeEEEccCCCCeeeeeEeCCCC---eEEeecCCCcEEEEeeCCC
Q 015371 336 VYIYDLV-SGAQVAKLDFHNAPVRDCCWHPIYP---MLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 336 i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~v~iw~~~~~ 386 (408)
+.+|+.. ++..+..+.+|...|.+++|+|+++ +|++|+.||.|+||++...
T Consensus 464 ~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 464 YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 3344432 5677888999999999999999965 9999999999999998764
No 48
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.6e-43 Score=298.59 Aligned_cols=278 Identities=19% Similarity=0.263 Sum_probs=231.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee---EEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK---IQK 77 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~---~~~ 77 (408)
..+++|+||++++++++.+...++|.... ...+..|...|.+++|+|+|.+||+|+.|+.+++|++..... ...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~ 146 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 146 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGG
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccc
Confidence 46899999999999999999888887543 346778999999999999999999999999999999864311 011
Q ss_pred ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCE
Q 015371 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQE 155 (408)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 155 (408)
......|...|.+++|+|++..|++++.|++|++||+.+++.. ..+..| ...|.+++|+| ++++
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~--~~~~~h------------~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL--QSFHGH------------GADVLCLDLAPSETGNT 212 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECC------------SSCEEEEEECCCSSCCE
T ss_pred ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEcCC------------CCCeEEEEEEeCCCCCE
Confidence 1123456778999999999999999999999999999887653 333333 33799999987 5789
Q ss_pred EEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec--ccCCe
Q 015371 156 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGI 233 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i 233 (408)
|++|+.||.|++||+++++++..+.+|...|++++|+ |++++|++++.|++|++||++ .......+.. +...+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~----~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLR----ADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCcccce
Confidence 9999999999999999999999999999999999999 889999999999999999986 3444444433 33578
Q ss_pred EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEE
Q 015371 234 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 313 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
.+++|+|++++|++++.|+.|++||+.+ +..+..+.+|...
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~----------------------------------~~~~~~l~~h~~~----- 328 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLK----------------------------------GSRVSILFGHENR----- 328 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCSSC-----
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCC----------------------------------CceEEEEECCCCc-----
Confidence 9999999999999999999999999977 3456667777643
Q ss_pred EEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 314 CYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 314 ~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
+.+++|+|+|++|++|+.||.|++|+
T Consensus 329 -v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 329 -VSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -EEEEEECCCCCEEEEEcCCCCEEecC
Confidence 34557899999999999999999996
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-45 Score=314.82 Aligned_cols=298 Identities=12% Similarity=0.098 Sum_probs=223.0
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
..+..|.+.|++++|+|++++||+|+.|+.|++|++.++. .........|...|.+++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 4455678899999999999999999999999999998773 122334456777999999999999999999999999999
Q ss_pred CCCCc-eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc---ceeeecC-cCCCceE
Q 015371 114 VGSSA-RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPA-HKSDVNT 188 (408)
Q Consensus 114 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~v~~ 188 (408)
+.+++ ......+.. |...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+
T Consensus 84 ~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLR------------LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp -----CCCCEEECCC------------CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred cCCCCceeeeeEecc------------cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 98776 222222222 34479999999999999999999999999999887 3667777 9999999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccc--------------cCCccceeeecccCCeEEEEecCCCCeEEEeecCCeE
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFI--------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 254 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 254 (408)
++|+ |++++|++++.|+.|++||++... ..+.....+ +|...|.+++|+|++++|++++.||.|
T Consensus 152 ~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 9999 789999999999999999974211 123445555 899999999999999999999999999
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 334 (408)
++||+++..... ..+..+.+|... +.+++|+|++++|++|+.++
T Consensus 230 ~iwd~~~~~~~~------------------------------~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 230 TIAYPSAPEQPP------------------------------RALITVKLSQLP------LRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp C-CEECSTTSCE------------------------------EECCCEECSSSC------EEEEEEEETTEEEEEESSSS
T ss_pred EEEECCCCCCcc------------------------------eeeEeecCCCCc------eEEEEEcCCCCEEEEEcCCc
Confidence 999998733210 114555566532 34457888899999998777
Q ss_pred eEEEEECCCCc--e-------------------------e---------EEE----------------ccCCCCeeeeeE
Q 015371 335 SVYIYDLVSGA--Q-------------------------V---------AKL----------------DFHNAPVRDCCW 362 (408)
Q Consensus 335 ~i~vwd~~~~~--~-------------------------~---------~~~----------------~~~~~~v~~~~~ 362 (408)
.+ +|+..... . . ..+ ..|.+.|+++++
T Consensus 274 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~ 352 (377)
T 3dwl_C 274 PI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP 352 (377)
T ss_dssp EE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE
T ss_pred EE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec
Confidence 66 66654211 0 0 111 128999999997
Q ss_pred eCCCC----eEEeecCCCcEEEEee
Q 015371 363 HPIYP----MLISSSWDCNIVRWEI 383 (408)
Q Consensus 363 ~~~~~----~l~s~~~dg~v~iw~~ 383 (408)
.+... .|+|++.||.|++||+
T Consensus 353 ~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 353 YAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEETTEEEEEEEEETTSEEEEECC
T ss_pred cCCCCCceEEEEeecCCCcEEEecC
Confidence 66543 5999999999999986
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.1e-43 Score=345.25 Aligned_cols=357 Identities=16% Similarity=0.180 Sum_probs=276.0
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
.+++|||||+++++++.+....+|.... ...+.+|.+.|.+++|+|++++||+++.||.|++||+.++..+...
T Consensus 619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--- 695 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY--- 695 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE---
Confidence 5789999999999988887777777544 3567899999999999999999999999999999999998766544
Q ss_pred ccceeeEEEEEeCC--CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 82 KALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 82 ~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
..|...|.+++|+| ++.++++++.|+.|++||+.+++.. ..+.. |..+|.+++|+|++++++++
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~------------h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--NTMFG------------HTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE--EEECC------------CSSCEEEEEECSSTTEEEEE
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh--heecC------------CCCCEEEEEEecCCCEEEEE
Confidence 35666899999999 5568999999999999999887653 22223 34479999999999999999
Q ss_pred ecCCeEEEEECCCCcceeee-------------------------------------------------------cCcCC
Q 015371 160 GSDNFIYVYDLQANKCSLRI-------------------------------------------------------PAHKS 184 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~-------------------------------------------------------~~~~~ 184 (408)
+.||.|++||+.+++....+ .+|..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS 841 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence 99999999998766433221 26788
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
.|.+++|+ +++.++++++.||.|++||+. .+.....+.+|...|.+++|+|++++|++++.||.|++||+.....
T Consensus 842 ~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 842 TIQYCDFS-PYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp CCCEEEEC-SSTTEEEEECSSSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred ceEEEEEc-CCCCEEEEEeCCCeEEEEEcC----CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 99999999 889999999999999999975 6778888999999999999999999999999999999999875332
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeeeccccee--eEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR--TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
......... ....................+.......... .....+.+.+++|+++++++|+.+|.|++||+.
T Consensus 917 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~ 991 (1249)
T 3sfz_A 917 NSAIVLKQE-----IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991 (1249)
T ss_dssp CCSSSEEEE-----EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred eeeecccce-----eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence 211110000 0000000000000011111111111111100 001224456789999999999999999999999
Q ss_pred CCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 343 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++..
T Consensus 992 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp TTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred CCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 9999999999999999999999999999999999999999987543
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-43 Score=306.94 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=238.5
Q ss_pred eecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEc----CCCe------eEEEecc-cc------cceeeEEEEEeCCCC
Q 015371 36 VDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNV----DKNW------KIQKDIE-TK------ALRWTITDTSLSPDQ 97 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~----~~~~------~~~~~~~-~~------~~~~~v~~~~~~~~~ 97 (408)
...|.+.|++++|+|+++ +||+|+.||.|++|++ .++. ....... .. .|...|.+++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345669999999999999 9999999999999999 7765 2222211 11 156689999999999
Q ss_pred ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee
Q 015371 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL 177 (408)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 177 (408)
++|++++.||.|++||.. ++. ...+.. |..+|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 121 ~~l~~~~~dg~i~i~~~~-~~~--~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNKT-GAL--LNVLNF------------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp SEEEEEETTSCEEEEETT-SCE--EEEECC------------CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CEEEEEeCCCeEEEEeCC-CCe--eeeccC------------CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 999999999999999943 322 222333 33479999999999999999999999999999999888
Q ss_pred eecCcCCC---------------ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 178 RIPAHKSD---------------VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 178 ~~~~~~~~---------------v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
.+..+... +.+++|+ ++ ..+++++.||.|++||++ .......+..|...|.+++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGAIFVYQIT----EKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EECCC---------------CCCBSCCEEE-ET-TEEEEECGGGCEEEEETT----CSSCSEEECCCSSCEEEEEEETTT
T ss_pred EeeccccCccceeeccccCCcceeeEEEEc-CC-CEEEEEcCCCeEEEEEcC----CCceeeeeccCCCceEEEEECCCC
Confidence 88877776 9999999 54 568899999999999975 567778888999999999999999
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
++|++++.|+.|++||+++ ...+..+..|... +.+++|+|
T Consensus 260 ~~l~~~~~d~~i~i~d~~~----------------------------------~~~~~~~~~~~~~------i~~~~~~~ 299 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGN----------------------------------GNSQNCFYGHSQS------IVSASWVG 299 (425)
T ss_dssp TEEEEEETTSCEEEECSSS----------------------------------BSCSEEECCCSSC------EEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCC----------------------------------CccceEecCCCcc------EEEEEECC
Confidence 9999999999999999987 3344555555532 33446778
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|++....
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 88 99999999999999999999999999999999999999999999999999999999997654
No 52
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.5e-42 Score=301.63 Aligned_cols=286 Identities=17% Similarity=0.217 Sum_probs=232.9
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceee
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (408)
.++.|+||++ ++||+|. |++|+|||..+++... ......|...|++++|+|+|++|++|+.||.|++||+.+++..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~- 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL- 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE-
Confidence 3677999986 5778775 8999999999986554 3445567778999999999999999999999999999987653
Q ss_pred eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEEEEecCCCCEEE
Q 015371 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIF 200 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~ 200 (408)
.....| ...+.++.+ ++..|++|+.|+.+++||.... ..+..+.+|...+..+.++ +++.+++
T Consensus 183 -~~~~~h------------~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l~ 246 (420)
T 4gga_A 183 -RNMTSH------------SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLA 246 (420)
T ss_dssp -EEECCC------------SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEE
T ss_pred -EEEeCC------------CCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCeee
Confidence 333333 336887776 5679999999999999998764 4456778999999999999 8999999
Q ss_pred EecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe-EEE--eecCCeEEEEeCCCCcCccccccccccccc
Q 015371 201 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY-FIS--NGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 277 (408)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 277 (408)
+++.|+.+++||.+........+.....|...|.+++|+|++.. +++ |+.|+.|++||+++
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---------------- 310 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---------------- 310 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT----------------
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc----------------
Confidence 99999999999987444444566778889999999999997654 443 45799999999987
Q ss_pred cceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee--CCCeEEEEECCCCceeEEEccCCC
Q 015371 278 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFHNA 355 (408)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~ 355 (408)
+.....+..+.. +.+..|+++++.+++++ .||.|++||+.+++++.++.+|.+
T Consensus 311 ------------------~~~~~~~~~~~~-------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~ 365 (420)
T 4gga_A 311 ------------------GACLSAVDAHSQ-------VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 365 (420)
T ss_dssp ------------------TEEEEEEECSSC-------EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred ------------------cccceeeccccc-------eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC
Confidence 344455554432 22334667788887765 789999999999999999999999
Q ss_pred CeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 356 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.|++++|+|+|++|+||+.|++|+|||+.+..+
T Consensus 366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 366 RVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 999999999999999999999999999987544
No 53
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-42 Score=327.83 Aligned_cols=242 Identities=11% Similarity=0.057 Sum_probs=185.3
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCcee--eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
..+++|+|||+++++++.+...++|....... ...|...|.+++|+| |++|++++.|++|++||+.+++.+....
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-- 96 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-- 96 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE--
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc--
Confidence 46899999999999999988888887655432 235788999999999 8899999999999999999887665542
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEe
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAG 160 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 160 (408)
+...|++++|+|++++|++|+.||.|++||+.+++..... ...... .......|..+|.+++|+|+ +..+++|+
T Consensus 97 --~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~-i~~~~~--~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 97 --VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK-LDNLQK--SSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp --CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE-ECCHHH--HHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred --CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce-eccccc--cccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 3457999999999999999999999999999887642111 100000 00112456668999999996 57899999
Q ss_pred cCCeEEEEECCCCcceeeecCc------------------CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcc
Q 015371 161 SDNFIYVYDLQANKCSLRIPAH------------------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 222 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (408)
.||.| +||+++++.+..+..| ...|++++|+ |++.+|++++.||+|++||++ .++.
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~----~g~~ 245 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDAN----SGHM 245 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETT----TCCE
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECC----CCcE
Confidence 99999 9999999888777655 5789999999 889999999999999999986 3333
Q ss_pred cee--e---e-------------cccCCeEEEEec----CCC-CeEEEeecC-----CeEEEEeC
Q 015371 223 NGV--L---M-------------GHLEGITFIDSR----RDG-RYFISNGKD-----QTTKLWDI 259 (408)
Q Consensus 223 ~~~--~---~-------------~~~~~i~~~~~~----~~~-~~l~~~~~d-----~~i~iwd~ 259 (408)
+.. + . .|...|.+++|+ |++ .+|++++.| ..+.+|++
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 321 1 1 134578899985 443 456666554 26777774
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-42 Score=289.65 Aligned_cols=282 Identities=12% Similarity=0.192 Sum_probs=225.2
Q ss_pred ceeeEecCCc-cEEEeecCceEEEEEEec--------CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee
Q 015371 4 GREVNYSGRG-RFSAADSCHVLSRYLPVN--------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~~~~~~~~~~~--------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
..+++|+|++ .++++++.+...++|... ....+.+|...|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence 3578999965 788888888777766542 2346889999999999999999999999999999999999876
Q ss_pred EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--
Q 015371 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-- 152 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 152 (408)
+... .+|...|.+++|+|++.+|++++.|+.|++||+..... ..+.. |...|.++.|.|.
T Consensus 100 ~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~---~~~~~------------h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 100 YQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL---ATLLG------------HNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEE---ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE---EEECC------------CSSCEEEEEECCC--
T ss_pred eEEE---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEec------------cCCcEEEEEEccCCC
Confidence 6543 45667899999999999999999999999999975422 22222 3447999999985
Q ss_pred ----CCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec
Q 015371 153 ----GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG 228 (408)
Q Consensus 153 ----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 228 (408)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+ |++++|++++.||.|++||++ ..+.+..+..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~----~~~~~~~~~~ 236 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLA----AKKAMYTLSA 236 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETT----TTEEEEEEEC
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC----CCcEEEEecC
Confidence 4489999999999999999999888999999999999999 899999999999999999975 5666666664
Q ss_pred ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccc-
Q 015371 229 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV- 307 (408)
Q Consensus 229 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (408)
...|.+++|+|++.+|++++. +.+++|++..... +..+..+..
T Consensus 237 -~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~----------------------------------~~~~~~~~~~ 280 (319)
T 3frx_A 237 -QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYL----------------------------------VDDLRPEFAG 280 (319)
T ss_dssp -CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEE----------------------------------EEEECCCCTT
T ss_pred -CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCee----------------------------------eeccCccccc
Confidence 468999999999999888775 4599999876221 111111100
Q ss_pred -eeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 308 -LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 308 -~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
.......+.+++|+|||++|++|+.||.|++||+.++
T Consensus 281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 0000122345689999999999999999999998664
No 55
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-43 Score=330.50 Aligned_cols=371 Identities=8% Similarity=-0.035 Sum_probs=248.7
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCce--------------eeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPW--------------KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYN 68 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--------------~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~ 68 (408)
..+++|+|++.++++++.+...++|...... .+.+|.+.|.+++|+|+ +..|++|+.||.| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 3689999999999998888877888765432 34689999999999996 5789999999999 999
Q ss_pred cCCCeeEEEeccc---------------ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeee-------
Q 015371 69 VDKNWKIQKDIET---------------KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT------- 126 (408)
Q Consensus 69 ~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~------- 126 (408)
+.+++.+...... ..|...|.+++|+|++++|++++.||.|++||+.+++......+.
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~ 259 (902)
T 2oaj_A 180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP 259 (902)
T ss_dssp TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence 9998766554322 234567999999999999999999999999999876643211110
Q ss_pred -------------eeeeeeeec--------------CCC-----------------------------------------
Q 015371 127 -------------IHKGLDFSA--------------DGD----------------------------------------- 138 (408)
Q Consensus 127 -------------~~~~~~~~~--------------~~~----------------------------------------- 138 (408)
....+.+.. ...
T Consensus 260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (902)
T 2oaj_A 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL 339 (902)
T ss_dssp CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence 000111100 000
Q ss_pred CCccceEEEEEcC----------CCCEEEEEecCCeEEEEECCCCcceee-------e----------------------
Q 015371 139 EDEFGIFSVKFST----------DGQELVAAGSDNFIYVYDLQANKCSLR-------I---------------------- 179 (408)
Q Consensus 139 ~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~---------------------- 179 (408)
.+...|.++.+.+ +...+++++.||.|++||+.++..... +
T Consensus 340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~ 419 (902)
T 2oaj_A 340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG 419 (902)
T ss_dssp SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence 1122344455433 233677777889999999876643221 2
Q ss_pred ------------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee--e-----ecccCCeEEEEecC
Q 015371 180 ------------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--L-----MGHLEGITFIDSRR 240 (408)
Q Consensus 180 ------------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~~~~i~~~~~~~ 240 (408)
.+|...+.+++|+ |++++|++|+.|++|++||+............ + .+|...|.+++|+|
T Consensus 420 ~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp 498 (902)
T 2oaj_A 420 ALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA 498 (902)
T ss_dssp HHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred HHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence 2333444445556 68899999999999999998632111001111 1 17889999999999
Q ss_pred CCCeEEEeecCCeEEEEeCCCCcCccc---cccccccccccceeecccc-cceeecc-------CCCcceeeeeccccee
Q 015371 241 DGRYFISNGKDQTTKLWDIRKMSSNTT---DNSRLRDYDWDYRWMEYPS-YARRLKH-------PHDQSLATYKGHSVLR 309 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~ 309 (408)
++++|++|+.||+|++||+.+...... .......+.+....+.... ....+.. ...+++..+.+|..
T Consensus 499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~-- 576 (902)
T 2oaj_A 499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG-- 576 (902)
T ss_dssp TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC--
T ss_pred CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC--
Confidence 999999999999999999987531100 0000000000000000000 0000000 01134556666663
Q ss_pred eEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE-----Ec-cCCCCeeeeeEe-----CCC---CeEEeecCC
Q 015371 310 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-----LD-FHNAPVRDCCWH-----PIY---PMLISSSWD 375 (408)
Q Consensus 310 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~-~~~~~v~~~~~~-----~~~---~~l~s~~~d 375 (408)
.+++++||||| +||+|+.|++|++||++++..+.. +. +|.+.|++++|+ ||| ++|++|+.|
T Consensus 577 ----~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 577 ----KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp ----SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred ----cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 34566899999 999999999999999988776542 22 789999999999 886 799999999
Q ss_pred CcEEEEee
Q 015371 376 CNIVRWEI 383 (408)
Q Consensus 376 g~v~iw~~ 383 (408)
++|++||+
T Consensus 652 ~tv~~wd~ 659 (902)
T 2oaj_A 652 GEVITYKI 659 (902)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 99999999
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-42 Score=314.67 Aligned_cols=328 Identities=15% Similarity=0.135 Sum_probs=256.1
Q ss_pred ceeeEecCCcc-EEEeecCceEEEEEEecCc---eeeecccC---ceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeE
Q 015371 4 GREVNYSGRGR-FSAADSCHVLSRYLPVNGP---WKVDGMNS---RVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI 75 (408)
Q Consensus 4 ~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~---~~l~~h~~---~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~ 75 (408)
..+++|+|++. .+++++.+....+|..... ..+.+|.+ .|.+++|+|+ +++|++++.||.|++||+.+++.+
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe
Confidence 46899999998 6787777777777775543 46778999 9999999999 999999999999999999988766
Q ss_pred EEe-cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 76 QKD-IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 76 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
... .....|...|.+++|+ ++++|++++.|+.|++||+.+++...... .+. ..+...+.++.|. ++.
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT--LDK--------QQLGNQQVGVVAT-GNG 310 (615)
T ss_dssp EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCT--------TCGGGCEEEEEEE-ETT
T ss_pred EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCC--------CcccCceeEEEeC-CCC
Confidence 654 2111566789999999 99999999999999999998876533322 210 1122357888886 888
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecC--------------------------------CCCEEEEe
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE--------------------------------TGHLIFSG 202 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--------------------------------~~~~l~~~ 202 (408)
++++++.+|.|++||+.+++.+..+.+|...|++++| |. ++..|+++
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~ 389 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 389 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence 9999999999999999988887777777666666655 21 24455566
Q ss_pred cCCCeEEEEeccccc-----------------------------------------------------------------
Q 015371 203 SDDSLCKVWDRRCFI----------------------------------------------------------------- 217 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~----------------------------------------------------------------- 217 (408)
+.|+.|++||++...
T Consensus 390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 469 (615)
T ss_dssp ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeE
Confidence 666666666553210
Q ss_pred -----cCCccc-eeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 218 -----SKGRAN-GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 218 -----~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
...... ..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~------------------------------ 519 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS------------------------------ 519 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------
T ss_pred EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC------------------------------
Confidence 000111 44567889999999999999999999999999999987
Q ss_pred ccCCCcceeeeec-ccceeeEEEEEeeccccC----------CCcEEEEeeCCCeEEEEECCCC-ceeEEEccCCCCeee
Q 015371 292 KHPHDQSLATYKG-HSVLRTLIRCYFSPEYST----------AQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRD 359 (408)
Q Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~----------~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~ 359 (408)
.+.+..+.+ |.. .+.+++|+| ++++|++++.||.|++||+.++ +.+..+.+|...|++
T Consensus 520 ----~~~~~~~~~~h~~------~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 589 (615)
T 1pgu_A 520 ----REVKTSRWAFRTS------KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 589 (615)
T ss_dssp ----TEEEECCSCCCSS------CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEE
T ss_pred ----CcceeEeecCCCC------ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEE
Confidence 344444444 542 334457888 9999999999999999999998 788899999999999
Q ss_pred eeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 360 CCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 360 ~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
++|+|+++ |++++.||.|++|++..
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999 99999999999999975
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=286.95 Aligned_cols=301 Identities=18% Similarity=0.218 Sum_probs=234.1
Q ss_pred EEEEecCceeeec--ccC--ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE
Q 015371 26 RYLPVNGPWKVDG--MNS--RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV 101 (408)
Q Consensus 26 ~~~~~~~~~~l~~--h~~--~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 101 (408)
++.|..+...|.. ..+ ..++|+||+++ +||+|. |++|+|||+.+++.+.. .....|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEE
Confidence 3445555455542 222 35789999986 777764 89999999999866554 34556777899999999999999
Q ss_pred EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceeeec
Q 015371 102 YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIP 180 (408)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 180 (408)
+|+.||.|++|++.+++.. .....+. ..+.+ +++++..+++++.++.+.+|+..... .+..+.
T Consensus 84 sgs~Dg~v~iw~~~~~~~~--~~~~~h~------------~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRL--RNMTSHS------------ARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp EEETTSEEEEEETTTTEEE--EEEECCS------------SCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEECCCcEEEeecCCceeE--EEecCcc------------ceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 9999999999999988653 3333332 24555 44567799999999999999987654 456678
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeE---EEeecCCeEEEE
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF---ISNGKDQTTKLW 257 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~d~~i~iw 257 (408)
+|...+..+.+. ++++++++++.|+.|++||++..............+.+.|.++.++|++..+ ++++.++.|++|
T Consensus 148 ~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 148 GHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred CccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 899999999999 8899999999999999999875444445566677788999999999987644 466788999999
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee--CCCe
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--SDNS 335 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~ 335 (408)
|.+.. .......... .+....+++++..+++++ .|+.
T Consensus 227 d~~~~----------------------------------~~~~~~~~~~-------~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 227 NVCSG----------------------------------ACLSAVDAHS-------QVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp ETTTC----------------------------------CEEEEEECSS-------CEEEEEEETTTTEEEEEECTTTCC
T ss_pred ecccc----------------------------------ccccccccee-------eeeeeeecccccceEEEEEcCCCE
Confidence 98872 2222222221 112234666788777654 7999
Q ss_pred EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 336 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
|++||+++++++.++.+|.+.|++++|+|++++|+||+.||+|+|||+.+..
T Consensus 266 i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999997653
No 58
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-43 Score=302.83 Aligned_cols=288 Identities=16% Similarity=0.200 Sum_probs=232.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE----E
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI----Q 76 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~----~ 76 (408)
..+++|+|+|+++++++.+...++|.... ...+.+|...|.+++|+|+|++||+|+.|+.+++|++.+.... .
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~ 148 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP 148 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSST
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcc
Confidence 36899999999999999998888887654 3567899999999999999999999999999999998753211 1
Q ss_pred EecccccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCC
Q 015371 77 KDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQ 154 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 154 (408)
......+|...|.++.|+|+ +..|++++.|++|++||+.+++........ ....|...|.++.|++ +++
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~---------~~~~h~~~v~~~~~~~~~~~ 219 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE---------FPSGHTADVLSLSINSLNAN 219 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC---------SSSSCCSCEEEEEECSSSCC
T ss_pred ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc---------cCCCCccCeEEEEeecCCCC
Confidence 12234567778999999996 457999999999999999987654322111 1134566899999987 889
Q ss_pred EEEEEecCCeEEEEECC-CCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc---
Q 015371 155 ELVAAGSDNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--- 230 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 230 (408)
+|++|+.|+.|++||++ .++.+..+.+|...|++++|+ |++++|++|+.||+|++||++ .+..+..+..+.
T Consensus 220 ~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMR----TGHQLQVYNREPDRN 294 (380)
T ss_dssp EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETT----TTEEEEEECCCCSSS
T ss_pred EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECC----CCcEEEEeccccccc
Confidence 99999999999999997 457778889999999999999 899999999999999999986 555555554432
Q ss_pred ----CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee----
Q 015371 231 ----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY---- 302 (408)
Q Consensus 231 ----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 302 (408)
..|++++|+|+|++|++|+.||.|++||+... +.+..+
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~----------------------------------~~~~~~~~~~ 340 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA----------------------------------EMVLNLGTLQ 340 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC----------------------------------CEEEEECCSC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC----------------------------------ceEEEEeccc
Confidence 34899999999999999999999999998762 222222
Q ss_pred ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 303 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
.+|.. .+.+++|+|+|++|++|+.||.|++|++...+
T Consensus 341 ~~h~~------~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 341 NSHEG------RISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSCCC------CCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCC------ceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 34442 34455789999999999999999999987654
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5e-42 Score=291.46 Aligned_cols=292 Identities=15% Similarity=0.187 Sum_probs=222.5
Q ss_pred eeeEe-----cC-CccEEEeecCceEEEEEEecC----------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEE
Q 015371 5 REVNY-----SG-RGRFSAADSCHVLSRYLPVNG----------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (408)
Q Consensus 5 ~~~~~-----s~-dg~~~~~~~~~~~~~~~~~~~----------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 68 (408)
.+++| ++ |+.++++++.+...++|.... ...+.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus 25 ~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 25 TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104 (343)
T ss_dssp EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 57788 66 999999998888777776542 245789999999999999999999999999999999
Q ss_pred cCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEE
Q 015371 69 VDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVK 148 (408)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 148 (408)
+.++..+... .+|...|.+++|+|++++|++++.|+.|++||+......... ....|...|.+++
T Consensus 105 ~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 105 LRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA------------EKENHSDWVSCVR 169 (343)
T ss_dssp TTSSCEEEEE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC------------TTTSCSSCEEEEE
T ss_pred CCCCcEEEEE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee------------cccCCCceeeeee
Confidence 9988665543 456678999999999999999999999999999743221111 1123455799999
Q ss_pred EcCCC----------CEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccccc
Q 015371 149 FSTDG----------QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 218 (408)
Q Consensus 149 ~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (408)
|+|++ .+|++++.|+.|++||. ..+....+.+|...|.+++|+ |++++|++|+.||.|++||++.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~--- 244 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILN--- 244 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSC---
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCC---
Confidence 99987 78999999999999994 566677788999999999999 8999999999999999999741
Q ss_pred CCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcc
Q 015371 219 KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 298 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
.......+ .+...|.+++|+|++.++++ +.|+.|++||+.+......... .......
T Consensus 245 ~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~---------------------~~~~~~~ 301 (343)
T 2xzm_R 245 LTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTI---------------------EAEPITK 301 (343)
T ss_dssp CSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEEC---------------------CCCSGGG
T ss_pred Ccccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEe---------------------ecCcchh
Confidence 22333333 35567999999999987765 4688899999987432210000 0000000
Q ss_pred eeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 299 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
.....+|. ..+.+++|+|+|++|++|+.||.|++|++.+++
T Consensus 302 ~~~~~~~~------~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 302 AEGQKGKN------PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp BTTBCCSC------CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhhhcCCC------CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 01112333 223556899999999999999999999987653
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-42 Score=298.98 Aligned_cols=289 Identities=19% Similarity=0.227 Sum_probs=231.5
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
+|...+.+.++++++..+++++.|+.|++|++.++........ .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec--CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 6766655544444456688889999999999998865544332 25668999999999999999999999999999887
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC-CCcceeeecCcCCCceEEEEecCCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~ 196 (408)
+.. ..+.. |...|.+++| ++..+++++.||.|++||++ .+.....+.+|...|.+++|+ +++
T Consensus 167 ~~~--~~~~~------------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 229 (401)
T 4aez_A 167 TKL--RTMAG------------HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDG 229 (401)
T ss_dssp CEE--EEECC------------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTS
T ss_pred eEE--EEecC------------CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc-CCC
Confidence 643 22223 3447999999 46799999999999999998 566677888999999999999 799
Q ss_pred CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC-eEEEee--cCCeEEEEeCCCCcCccccccccc
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFISNG--KDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
.+|++++.|+.|++||++ .......+..|...|.+++|+|++. ++++++ .|+.|++||+++
T Consensus 230 ~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------------ 293 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------------ 293 (401)
T ss_dssp SEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------------
T ss_pred CEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------------
Confidence 999999999999999976 5777788889999999999999775 455544 699999999987
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE--eeCCCeEEEEECCCCceeE--E
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDNSVYIYDLVSGAQVA--K 349 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~--~ 349 (408)
+..+..+..+. .+.+++|+|+++++++ |+.||.|++||+.+++... .
T Consensus 294 ----------------------~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~ 344 (401)
T 4aez_A 294 ----------------------GARVNTVDAGS-------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD 344 (401)
T ss_dssp ----------------------CCEEEEEECSS-------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE
T ss_pred ----------------------CCEEEEEeCCC-------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE
Confidence 33344443322 2345578889999999 5589999999999865544 4
Q ss_pred EccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 350 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
+.+|...|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 345 ~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 67899999999999999999999999999999998876543
No 61
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.9e-42 Score=292.78 Aligned_cols=299 Identities=15% Similarity=0.138 Sum_probs=237.0
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCc-eEEEeecCcEEEEEEC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNIVDV 114 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~ 114 (408)
..+|.+.|++++|+|++++|++++.|+.|++|++.++...........|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 358999999999999999999999999999999988752222223346677999999999999 9999999999999999
Q ss_pred -CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC---------CcceeeecCcCC
Q 015371 115 -GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---------NKCSLRIPAHKS 184 (408)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~ 184 (408)
.+++.. .+.. ..|...|.+++|+| +..+++++.|+.|++||+++ ++++..+. |..
T Consensus 87 ~~~~~~~---~~~~----------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~ 151 (342)
T 1yfq_A 87 IGSPSFQ---ALTN----------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN 151 (342)
T ss_dssp SSSSSEE---ECBS----------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC
T ss_pred ccCCceE---eccc----------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC
Confidence 776542 2222 01344799999999 99999999999999999987 77777777 889
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCc
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 263 (408)
.|.+++|+ +++ +++++.|+.|++||++.. ...........|...+.+++|+| +++++++++.||.|++|+++...
T Consensus 152 ~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 152 KIFTMDTN-SSR--LIVGMNNSQVQWFRLPLC-EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CEEEEEEC-SSE--EEEEESTTEEEEEESSCC-TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred ceEEEEec-CCc--EEEEeCCCeEEEEECCcc-ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 99999999 554 999999999999998620 11223344557888999999999 99999999999999999998731
Q ss_pred CccccccccccccccceeecccccceeeccCCCcceeeeeccccee---eEEEEEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR---TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
... .......+..|.... .....+.+++|+|++++|++++.||.|++||
T Consensus 228 ~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 228 DDY----------------------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp CST----------------------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ccc----------------------------ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 000 013334444443200 0011344557888999999999999999999
Q ss_pred CCCCceeEEEccC-CCCeeeeeEeCCCCeEEeecCCCc-EEEEee
Q 015371 341 LVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISSSWDCN-IVRWEI 383 (408)
Q Consensus 341 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~-v~iw~~ 383 (408)
+.+++.+..+..| ..+|++++ |++++|++++.||. .+.|..
T Consensus 280 ~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 280 LQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred CccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 9999999999998 99999999 99999999999998 555554
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-41 Score=289.15 Aligned_cols=291 Identities=18% Similarity=0.238 Sum_probs=239.3
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
-|.+.|.+++|+|||++++++..++.+.+|.......... ...|...|.+++|+|++++|++++ ||.|++|++.++
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN---TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE---EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce---eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence 3567899999999999999988887777776554433322 235677999999999999999998 999999999876
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCc--ceeeecCcCCCceEEEEecCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~ 195 (408)
+......... ...|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+ ++
T Consensus 83 ~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 152 (337)
T 1gxr_A 83 GNKSPVSQLD---------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PD 152 (337)
T ss_dssp TCCSCSEEEE---------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TT
T ss_pred Cceeeeeccc---------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-CC
Confidence 5322111100 11244579999999999999999999999999999887 556678899999999999 88
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
++++++++.||.|++||++ ..+....+..|...+.+++|+|++++|++++.|+.|++||+++.
T Consensus 153 ~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------- 215 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------------- 215 (337)
T ss_dssp SSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------------
T ss_pred CCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-------------
Confidence 9999999999999999975 66778888899999999999999999999999999999999872
Q ss_pred cccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCC
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 355 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (408)
+.+..+.. . ..+..++|+|++++|++++.||.|++||+.+++. ..+..|..
T Consensus 216 ---------------------~~~~~~~~-~------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~ 266 (337)
T 1gxr_A 216 ---------------------RQLQQHDF-T------SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHES 266 (337)
T ss_dssp ---------------------EEEEEEEC-S------SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSS
T ss_pred ---------------------ceEeeecC-C------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCcc
Confidence 22233221 1 1234457889999999999999999999988775 46778999
Q ss_pred CeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 356 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 999999999999999999999999999987654
No 63
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.5e-42 Score=293.30 Aligned_cols=306 Identities=16% Similarity=0.149 Sum_probs=223.4
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE-EEecccccceeeEEEEEeCC--CCceEEEeecCcEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSP--DQRFLVYASICAIV 109 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 109 (408)
...+.+|.+.|++++|+|++++||+|+.||.|++|++.++... ........|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999875322 22233456777999999999 69999999999999
Q ss_pred EEEECCCCcee-------eeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCCcceeeec
Q 015371 110 NIVDVGSSARE-------SLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKCSLRIP 180 (408)
Q Consensus 110 ~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 180 (408)
++||+.+++.. ....+. .|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLN------------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEEC------------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEecCCCcccccccCcceeeeec------------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 99999876431 122222 34458999999999 9999999999999999999887655442
Q ss_pred -------------CcCCCceEEEEecC--CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC---
Q 015371 181 -------------AHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--- 242 (408)
Q Consensus 181 -------------~~~~~v~~l~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 242 (408)
.|...+.+++|+|. ++.++++++.++.+.+|+.. .........+.+|...|.+++|+|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK--DGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT--TSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC--CCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 67889999999943 38999999999999888754 11223467778899999999999998
Q ss_pred -CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 243 -RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 243 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
++|++++.||.|++||++........ .... .............
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~~~ 273 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLAS----------------------------------EESL--TNSNMFDNSADVD 273 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCcccc----------------------------------CCcc--cceeccCCCcccc
Confidence 89999999999999999873221110 0000 0000000011111
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
........+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 274 MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 1111222333455677787777888999999999999999999999999999999999999987654
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-41 Score=286.26 Aligned_cols=286 Identities=16% Similarity=0.171 Sum_probs=209.2
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCc-----eee-ec-ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe----
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGP-----WKV-DG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW---- 73 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~l-~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---- 73 (408)
.+++|+|+ ++++++.+...+++..... ..+ .+ |.+.|.+++|+|++++||+|+.|++|+||++....
T Consensus 18 ~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 18 WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF 95 (330)
T ss_dssp EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence 57889988 8888877777777765431 233 34 99999999999999999999999999999985421
Q ss_pred eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcC
Q 015371 74 KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFST 151 (408)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (408)
.........+|...|.+++|+|++++|++++.|+.|++||+.... ......+.. |...|.+++|+|
T Consensus 96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~------------h~~~v~~v~~~p 163 (330)
T 2hes_X 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE------------HSQDVKHVIWHP 163 (330)
T ss_dssp CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC------------CSSCEEEEEECS
T ss_pred cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc------------CCCceEEEEECC
Confidence 111223345678899999999999999999999999999995432 122222322 444799999999
Q ss_pred CCCEEEEEecCCeEEEEECCCC--cceeeecCcCCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCC----ccc
Q 015371 152 DGQELVAAGSDNFIYVYDLQAN--KCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKG----RAN 223 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~~ 223 (408)
++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+ ++ +.+|++|+.|++|++||++...... ...
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 9999999999999999998766 5778889999999999999 55 6789999999999999986321111 233
Q ss_pred eeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce-ee
Q 015371 224 GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-AT 301 (408)
Q Consensus 224 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 301 (408)
..+.. |...|.+++|++++ +|++++.||.|++||...... ... ..
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~--------------------------------~~~~~~ 289 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW--------------------------------KVFAKR 289 (330)
T ss_dssp EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE--------------------------------EEEEEE
T ss_pred eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce--------------------------------EEEecc
Confidence 33444 88999999999765 799999999999999765210 111 11
Q ss_pred eecccceeeEEEEEeeccccC--CCcEEEEeeCCCeEEEEECCC
Q 015371 302 YKGHSVLRTLIRCYFSPEYST--AQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~vwd~~~ 343 (408)
..+|.. ..+..++|+| ++++|++|+.||.|++||+++
T Consensus 290 ~~~h~~-----~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGV-----YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCTTTT-----SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccccc-----ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 233432 0123346777 689999999999999999864
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-42 Score=301.63 Aligned_cols=308 Identities=14% Similarity=0.242 Sum_probs=226.3
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee--------EEEecccccce------------eeEEEEEeCCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--------IQKDIETKALR------------WTITDTSLSPDQ 97 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~~~~~ 97 (408)
.|.+.|++++|+|+|++||+|+.||.|+||++.++.. ........+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5789999999999999999999999999999987652 11122233454 679999999998
Q ss_pred --ceEEEeecCcEEEEEECCCCceeee-eeeeeee-------------------------eeeeecCCCCCccceEEEEE
Q 015371 98 --RFLVYASICAIVNIVDVGSSARESL-ANVTIHK-------------------------GLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 98 --~~l~~~~~dg~i~~w~~~~~~~~~~-~~~~~~~-------------------------~~~~~~~~~~~~~~i~~~~~ 149 (408)
..|++++.|+.|++||+.+...... ....... ..........|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999976443210 0000000 00000113457778999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC-Cccee-------eecCcCCCceEEEEecCCC-CEEEEecCCCeEEEEeccccccCC
Q 015371 150 STDGQELVAAGSDNFIYVYDLQA-NKCSL-------RIPAHKSDVNTVCFADETG-HLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~l~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
+|++++|++| .|+.|++||+++ ++... .+.+|...|++++|+ |++ ++|++|+.||.|++||++......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9999999998 799999999984 33333 356899999999999 666 999999999999999987322222
Q ss_pred ccceeeecccC------------CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccc
Q 015371 221 RANGVLMGHLE------------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 288 (408)
Q Consensus 221 ~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (408)
.....+.+|.. .|.+++|+|++++|++++. +.|++||++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~-------------------------- 316 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME-------------------------- 316 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC--------------------------
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC--------------------------
Confidence 22677777776 8999999999999999998 99999999861
Q ss_pred eeeccCCCcceeeeecccceee---------EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc-------
Q 015371 289 RRLKHPHDQSLATYKGHSVLRT---------LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------- 352 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------- 352 (408)
...+..+.+|..... .....+.++|+|++++|++|+.||.|++||+.+++.+. +..
T Consensus 317 -------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~ 388 (447)
T 3dw8_B 317 -------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKP 388 (447)
T ss_dssp -------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCT
T ss_pred -------ccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccc
Confidence 123334444432111 00011235789999999999999999999999887653 222
Q ss_pred --------------------------CCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 353 --------------------------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 353 --------------------------~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+...|..++|+|++++|++++.++ +++|.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 245688999999999999998775 778764
No 66
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.3e-42 Score=285.14 Aligned_cols=259 Identities=17% Similarity=0.205 Sum_probs=202.8
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC--CceEEEeecCcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~ 111 (408)
..+.+|.+.|++++|+|+|++||+|+.|++|+||++..... .......+|..+|.+++|+|+ +++|++++.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 35679999999999999999999999999999999975311 112234567789999999874 899999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCCcc--eeeecCcCCCce
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDVN 187 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~ 187 (408)
||+.+++......+.. |...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.
T Consensus 82 Wd~~~~~~~~~~~~~~------------h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAV------------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EEBSSSCBCCCEEECC------------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred EEcCCCceEEEEEeec------------CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 9998765333333332 3447999999997 88999999999999999987632 355678999999
Q ss_pred EEEEecC------------CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC---CeEEEeecCC
Q 015371 188 TVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNGKDQ 252 (408)
Q Consensus 188 ~l~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~ 252 (408)
+++|+|. ++++|++|+.|++|++||++...........+.+|...|.+++|+|++ ++|++++.|+
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 9999942 257999999999999999863211122556788999999999999985 7999999999
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee--ecccceeeEEEEEeeccccCCCcEEEEe
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIYTG 330 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 330 (408)
+|++||++...... ....+ ..+. ..++.++|+|++++|+++
T Consensus 230 ~v~iWd~~~~~~~~-------------------------------~~~~~~~~~~~------~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 230 TCIIWTQDNEQGPW-------------------------------KKTLLKEEKFP------DVLWRASWSLSGNVLALS 272 (297)
T ss_dssp CEEEEEESSTTSCC-------------------------------EEEESSSSCCS------SCEEEEEECSSSCCEEEE
T ss_pred cEEEEEeCCCCCcc-------------------------------ceeeeecccCC------CcEEEEEECCCCCEEEEE
Confidence 99999987622100 00111 1222 234566899999999999
Q ss_pred eCCCeEEEEECC
Q 015371 331 SSDNSVYIYDLV 342 (408)
Q Consensus 331 ~~dg~i~vwd~~ 342 (408)
+.||.|++|+..
T Consensus 273 ~~D~~v~lw~~~ 284 (297)
T 2pm7_B 273 GGDNKVTLWKEN 284 (297)
T ss_dssp ETTSCEEEEEEC
T ss_pred cCCCcEEEEEEC
Confidence 999999999976
No 67
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-42 Score=303.25 Aligned_cols=284 Identities=14% Similarity=0.184 Sum_probs=227.9
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
..+++++|+|++++|++++.|+.|++||+.+..... ....+ ..+....|+|++++|++++.||.|++||+.+++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 345589999999999999999999999998764322 12222 34556678999999999999999999999876542
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 200 (408)
. .+. .|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|+
T Consensus 133 ~--~~~------------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~ 197 (420)
T 3vl1_A 133 E--IDQ------------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNVL 197 (420)
T ss_dssp E--ETT------------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEEE
T ss_pred e--ecc------------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEEE
Confidence 2 222 244489999999999999999999999999999999999999999999999999 8899999
Q ss_pred EecCCCeEEEEeccccccCCccceeeec---cc---------------------CCeEEEEecCCCCeEEEeecCCeEEE
Q 015371 201 SGSDDSLCKVWDRRCFISKGRANGVLMG---HL---------------------EGITFIDSRRDGRYFISNGKDQTTKL 256 (408)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~---------------------~~i~~~~~~~~~~~l~~~~~d~~i~i 256 (408)
+++.|+.|++||++ .++....+.. |. ..+.+++|+|++++|++++.||.|++
T Consensus 198 s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 198 SASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV 273 (420)
T ss_dssp EEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEE
T ss_pred EEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEE
Confidence 99999999999976 5566666553 33 44455556889999999999999999
Q ss_pred EeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee-cccceeeEEEEEeeccccCCCc-EEEEeeCCC
Q 015371 257 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDN 334 (408)
Q Consensus 257 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg 334 (408)
||+++. ..+..+. .|.. .+.+++|+|++. +|++|+.||
T Consensus 274 ~d~~~~----------------------------------~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 274 HNVFSK----------------------------------EQTIQLPSKFTC------SCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp EETTTC----------------------------------CEEEEECCTTSS------CEEEEEECSSCTTEEEEEETTS
T ss_pred EECCCC----------------------------------ceeEEcccccCC------CceeEEEeCCCCCEEEEEeCCC
Confidence 999873 2222222 2332 234557888898 999999999
Q ss_pred eEEEEECCCCce-eEEEcc-CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 335 SVYIYDLVSGAQ-VAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 335 ~i~vwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.|++||+++++. +..+.. |...|+++.| +++++|++++.||.|++|++....+
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred eEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 999999998754 677766 6778888855 5778999999999999999988544
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-41 Score=320.16 Aligned_cols=295 Identities=16% Similarity=0.215 Sum_probs=249.8
Q ss_pred CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
....+.+|.+.|.+++|+|++++||+++.||.|+|||+.++..+.... .|..+|.+++|+|++++|++++.||.|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe---cCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 346789999999999999999999999999999999999987665443 46668999999999999999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVC 190 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~ 190 (408)
||+.+++... .+..+ ...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++
T Consensus 82 w~~~~~~~~~--~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 82 FNYNTGEKVV--DFEAH------------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EETTTCCEEE--EEECC------------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EECCCCcEEE--EEecC------------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 9998876532 23333 337999999999999999999999999999887 66677888999999999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc-CCeEEEEecC--CCCeEEEeecCCeEEEEeCCCCcCccc
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
|+|.+++.|++++.||.|++||++ .......+..+. ..+.+++|+| ++.+|++++.||.|++||+++
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 217 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------ 217 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC------
Confidence 994488999999999999999975 445555555444 8899999999 999999999999999999987
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
+..+..+.+|... +..++|+|++++|++++.||.|++||+.+++.+
T Consensus 218 ----------------------------~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 218 ----------------------------KSCVATLEGHMSN------VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp ----------------------------TEEEEEEECCSSC------EEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred ----------------------------CcEEEEEcCCCCC------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3455666666533 334478889999999999999999999999999
Q ss_pred EEEccCCCCeeeeeEeCCCCe-EEeecCCCcEEEEeeCCCC
Q 015371 348 AKLDFHNAPVRDCCWHPIYPM-LISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~v~iw~~~~~~ 387 (408)
..+..|...+.+++|+|++.. +++++.|+.+.+|++....
T Consensus 264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 999999999999999999873 3555567788999987643
No 69
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-41 Score=280.88 Aligned_cols=255 Identities=17% Similarity=0.214 Sum_probs=204.6
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVA 158 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~ 158 (408)
..+|...|.+++|+|++++|++++.|+.|++||+.+........+.. |..+|.+++|++ ++++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g------------H~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG------------HEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC------------CSSCEEEEEECCGGGCSEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc------------ccCCeEEEEecCCCcCCEEEE
Confidence 45677799999999999999999999999999997643333334433 444899999986 4899999
Q ss_pred EecCCeEEEEECCCCc--ceeeecCcCCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 159 AGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
|+.|+.|++||+++++ .+..+..|...|.+++|+ |+ +.+|++++.|+.|++||++.. .......+.+|...|.
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~--~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSS--SCBCCEEEECCSSCEE
T ss_pred EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCC--CceeeeeeecccCccc
Confidence 9999999999998874 456678899999999999 54 789999999999999998621 1122456788999999
Q ss_pred EEEecCC-------------CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee
Q 015371 235 FIDSRRD-------------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 301 (408)
Q Consensus 235 ~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
+++|+|+ +++|++++.|+.|++||++..... ......
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~------------------------------~~~~~~ 199 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLEST 199 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE------------------------------EEEEEE
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce------------------------------EEEEEE
Confidence 9999997 579999999999999998762210 013455
Q ss_pred eecccceeeEEEEEeeccccCC---CcEEEEeeCCCeEEEEECCCCc---eeEEE--ccCCCCeeeeeEeCCCCeEEeec
Q 015371 302 YKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA---QVAKL--DFHNAPVRDCCWHPIYPMLISSS 373 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~s~~ 373 (408)
+.+|... +.+++|+|+ +.+|++++.|+.|++||+.+.. ....+ ..|...|.+++|+|++++|++++
T Consensus 200 l~~H~~~------V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 200 LEGHSDW------VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp ECCCSSC------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred ecCCCCc------eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence 6677633 344578887 4899999999999999997743 12233 46788999999999999999999
Q ss_pred CCCcEEEEeeCCC
Q 015371 374 WDCNIVRWEIPGI 386 (408)
Q Consensus 374 ~dg~v~iw~~~~~ 386 (408)
.||.|++|+....
T Consensus 274 ~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 274 GDNKVTLWKENLE 286 (297)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCcEEEEEECCC
Confidence 9999999998743
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-40 Score=292.13 Aligned_cols=305 Identities=20% Similarity=0.279 Sum_probs=255.1
Q ss_pred EecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc
Q 015371 8 NYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
+++++|.++++++.+....+|.... ...+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.+... ..|
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~h 198 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL---YGH 198 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE---CCC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE---CCC
Confidence 4566788999888888777777543 34677999999999998 569999999999999999998766544 356
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
...|.+++|+ ++.+++++.||.|++||+.+++... .+.. |..+|.++.| +++++++++.||.
T Consensus 199 ~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~------------~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 199 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH--VLMG------------HVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE--EEEC------------CSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE--EEcC------------CcccEEEEEE--CCCEEEEEcCCCE
Confidence 6689999995 6789999999999999998876532 2223 3337999999 7889999999999
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 244 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 244 (408)
|++||+++++.+..+.+|...|.+++| ++.++++++.||.|++||++ .++.+..+.+|...+.++.++ +++
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~ 331 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNI 331 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CCE
Confidence 999999999999999999999999998 57899999999999999975 677888899999999988875 679
Q ss_pred EEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec---ccceeeEEEEEeecccc
Q 015371 245 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG---HSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 245 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s 321 (408)
+++++.||.|++||+++ ++.+..+.. |.... .++++
T Consensus 332 l~~~~~dg~i~vwd~~~----------------------------------~~~~~~~~~~~~~~~~v------~~~~~- 370 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKT----------------------------------GQCLQTLQGPNKHQSAV------TCLQF- 370 (445)
T ss_dssp EEEEETTSCEEEEETTT----------------------------------CCEEEEECSTTSCSSCE------EEEEE-
T ss_pred EEEEeCCCeEEEEECCC----------------------------------CcEEEEEccCCCCCCCE------EEEEE-
Confidence 99999999999999987 344455554 33222 22233
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEE-----ccCCCCeeeeeEeCCCCeEEeecCCCc----EEEEeeCCC
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGAQVAKL-----DFHNAPVRDCCWHPIYPMLISSSWDCN----IVRWEIPGI 386 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~----v~iw~~~~~ 386 (408)
++++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|++.+|++++.||. |.+||+...
T Consensus 371 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 371 -NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 3689999999999999999999998888 468889999999999999999999998 999999864
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.3e-41 Score=280.27 Aligned_cols=277 Identities=19% Similarity=0.336 Sum_probs=229.7
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|+|+|+++++++.+...++|.... ...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+...
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-- 103 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-- 103 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE--
Confidence 46899999999999988887777776543 3467899999999999999999999999999999999988666543
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
..|...|.+++|+|++++|++++.|+.|++||+.+++.. ..+.. |..+|.+++|+|++++|++++
T Consensus 104 -~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 104 -KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPA------------HSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE--EEECC------------CSSCEEEEEECTTSSEEEEEE
T ss_pred -cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE--EEecC------------CCCcEEEEEEcCCCCEEEEEe
Confidence 345668999999999999999999999999999877642 22222 334799999999999999999
Q ss_pred cCCeEEEEECCCCcceeee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE---E
Q 015371 161 SDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF---I 236 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~---~ 236 (408)
.||.|++||+++++.+..+ ..+..++.+++|+ +++++|++++.|+.|++||++ .++.+..+.+|.....+ .
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETT----TTEEEEEECSSCCSSSCCCEE
T ss_pred CCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEEecCCceEEEEEE
Confidence 9999999999998877766 4466789999999 899999999999999999975 66777778877765432 2
Q ss_pred EecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 237 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
...+++.+|++++.||.|++||+++ .+.+..+.+|... +.
T Consensus 244 ~~~~~~~~l~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~------v~ 283 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDNLVYIWNLQT----------------------------------KEIVQKLQGHTDV------VI 283 (312)
T ss_dssp EECSSSCEEEECCTTSCEEEEETTT----------------------------------CCEEEEECCCSSC------EE
T ss_pred EEeCCCcEEEEECCCCEEEEEECCC----------------------------------chhhhhhhccCCc------EE
Confidence 3346788999999999999999987 4556677777633 34
Q ss_pred eccccCCCcEEEEee--CCCeEEEEECC
Q 015371 317 SPEYSTAQKYIYTGS--SDNSVYIYDLV 342 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~--~dg~i~vwd~~ 342 (408)
..+|+|+++++++++ .|+.|++|+..
T Consensus 284 ~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 284 STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEeecCcCCceEEEEccCCccEEEecCC
Confidence 557888999999987 69999999864
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.4e-40 Score=291.75 Aligned_cols=319 Identities=16% Similarity=0.246 Sum_probs=249.0
Q ss_pred ecCCccEEEeecCceEEEEEEecCc---eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccce
Q 015371 9 YSGRGRFSAADSCHVLSRYLPVNGP---WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR 85 (408)
Q Consensus 9 ~s~dg~~~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 85 (408)
+++++.++++++.+...++|..... ..+.+|.+.|.+++|+|++ +|++|+.||+|++||+.++..+... ..|.
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~---~~h~ 203 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF---EGHN 203 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE---CCCS
T ss_pred EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE---CCCC
Confidence 3446778888888887788875543 4677999999999999988 9999999999999999998766543 3566
Q ss_pred eeEEEEEeC--CCCceEEEeecCcEEEEEECCCCceeeeeeeeeee---------eeeeecCCCCCccceEEEEEcCCCC
Q 015371 86 WTITDTSLS--PDQRFLVYASICAIVNIVDVGSSARESLANVTIHK---------GLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 86 ~~v~~~~~~--~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
..|.+++|+ +++++|++++.||.|++||+.+............. ...+......|...+.++ +++++
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 281 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN 281 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence 689999998 57899999999999999999876543211110000 000111123455567766 57889
Q ss_pred EEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 155 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
++++++.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++|+.||.|++||++ .++.+..+.+|...|.
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVG 356 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEE
Confidence 99999999999999999999999999999999999999 889999999999999999975 6788889999999999
Q ss_pred EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 235 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
++.++ +++|++++.||.|++||+++.. ...... +...
T Consensus 357 ~~~~~--~~~l~s~s~dg~v~vwd~~~~~----------------------------------~~~~~~-~~~~------ 393 (464)
T 3v7d_B 357 LLRLS--DKFLVSAAADGSIRGWDANDYS----------------------------------RKFSYH-HTNL------ 393 (464)
T ss_dssp EEEEC--SSEEEEEETTSEEEEEETTTCC----------------------------------EEEEEE-CTTC------
T ss_pred EEEEc--CCEEEEEeCCCcEEEEECCCCc----------------------------------eeeeec-CCCC------
Confidence 99997 5799999999999999998722 111111 1111
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE-EccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
....+++++++++++|+ ||.|++||+++++.+.. +..|...|.+++|+ ...++++++.||.+.+|-+
T Consensus 394 ~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 394 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 11225677899999998 89999999999999886 56789999999998 3446666677777666544
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.7e-40 Score=311.63 Aligned_cols=321 Identities=14% Similarity=0.165 Sum_probs=250.7
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|||||.++++++.+....+|.... ...+.+|.+.|.+++|+|++++||+++.||.|++|++.+++.+...
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-- 93 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-- 93 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--
Confidence 47899999999999988887777777544 3567799999999999999999999999999999999988766544
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAA 159 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 159 (408)
..|...|.+++|+|++++|++++.||.|++||+.++... ...+.. |..+|.+++|+| ++..++++
T Consensus 94 -~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~------------~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 94 -EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEG------------HEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-EEEEEC------------CSSCEEEEEEETTEEEEEEEE
T ss_pred -ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-EEEEcC------------CCCcEEEEEEEcCCCCEEEEE
Confidence 346668999999999999999999999999999876321 222222 333799999999 88999999
Q ss_pred ecCCeEEEEECCCCcceeeecCcC-CCceEEEEec-CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE
Q 015371 160 GSDNFIYVYDLQANKCSLRIPAHK-SDVNTVCFAD-ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 237 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 237 (408)
+.||.|++||+.+++....+..+. ..+.+++|+| +++.++++++.||.|++||++ .+.....+.+|...|.+++
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~ 235 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAV 235 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEEEE
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEEEE
Confidence 999999999999888777776554 8999999993 288999999999999999975 6777888899999999999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
|+|++++|++++.||.|++||+.+. ..+..+..+.. .++.
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~----------------------------------~~~~~~~~~~~------~v~~ 275 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY----------------------------------KVEKTLNVGLE------RSWC 275 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC----------------------------------SEEEEECCSSS------SEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC----------------------------------cEEEEeecCCC------cEEE
Confidence 9999999999999999999999873 33333443332 2233
Q ss_pred ccccCCCcE-EEEeeCCCeEEEEECCCCcee-------------------------------------------EEEccC
Q 015371 318 PEYSTAQKY-IYTGSSDNSVYIYDLVSGAQV-------------------------------------------AKLDFH 353 (408)
Q Consensus 318 ~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~-------------------------------------------~~~~~~ 353 (408)
++|+|++.. +++++.++.+.+|++...... ..+..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (814)
T 3mkq_A 276 IATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV 355 (814)
T ss_dssp EEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred EEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence 355666552 133333455666665432211 122334
Q ss_pred CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 354 NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
...+.+++|+|+|++|++++ ||.+.+|++..
T Consensus 356 ~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 356 DVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp SSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred ccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 55678889999988888887 88888888653
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.7e-40 Score=289.88 Aligned_cols=284 Identities=19% Similarity=0.245 Sum_probs=237.2
Q ss_pred eeeecccCce-eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 34 WKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 34 ~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
..+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+... .+|...|.+++|+|++ .|++++.||.|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~---~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL---SGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE---eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4688999885 56555 5689999999999999999998766543 4677799999999988 89999999999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc--CCCCEEEEEecCCeEEEEECCCCcc---------------
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGSDNFIYVYDLQANKC--------------- 175 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~--------------- 175 (408)
|+.+++.. ..+.. |..+|.+++|+ ++++++++++.|+.|++||+.++..
T Consensus 189 d~~~~~~~--~~~~~------------h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 189 DIKKGCCT--HVFEG------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ETTTTEEE--EEECC------------CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred ECCCCcEE--EEECC------------CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 99887643 23333 34479999998 5788999999999999999987653
Q ss_pred --------eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEE
Q 015371 176 --------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 176 --------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
...+.+|...+.++. ++++++++++.||.|++||++ ..+.+..+.+|...|.+++|+|+++++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEEEE
Confidence 345677888888885 558899999999999999975 67888889999999999999999999999
Q ss_pred eecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEE
Q 015371 248 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327 (408)
Q Consensus 248 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 327 (408)
++.||.|++||+++ ++.+..+.+|......+ .++ +++|
T Consensus 328 g~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~------~~~--~~~l 365 (464)
T 3v7d_B 328 ASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL------RLS--DKFL 365 (464)
T ss_dssp EETTSCEEEEETTT----------------------------------TEEEEEECCCSSCEEEE------EEC--SSEE
T ss_pred EeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCcEEEE------EEc--CCEE
Confidence 99999999999987 45667777776543322 343 6899
Q ss_pred EEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++++.||.|++||+.+++...... |...+..++|++++++|++++ ||.|++||+.+++.
T Consensus 366 ~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred EEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 999999999999999988776664 677788899999999999988 99999999988754
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=285.57 Aligned_cols=302 Identities=12% Similarity=0.099 Sum_probs=235.3
Q ss_pred cCceeeecccCceeEEEEcCC---CCeEEEEeCCCcEEEEEcCC-CeeEEEecccccceeeEEEEEeCCCCceEEEeecC
Q 015371 31 NGPWKVDGMNSRVYTSQFSND---GSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC 106 (408)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~---~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 106 (408)
.....+.+|.+.|++++|+|+ |++|++|+.||.|++|++.+ +..+.. ....|...|.+++|+|++++|++++.|
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEEcCC
Confidence 334567899999999999999 69999999999999999987 433322 234566789999999999999999999
Q ss_pred cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE--cCCCCEEEEEecCCeEEEEECCCCcceeeecCcCC
Q 015371 107 AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF--STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 184 (408)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 184 (408)
|.|++||+.+++.... .. |..+|.+++| ++++++|++++.||.|++||+++++.+..+..+.
T Consensus 108 g~v~iwd~~~~~~~~~---~~------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~- 171 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQI---AQ------------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE- 171 (368)
T ss_dssp SEEEEEETTTTEEEEE---EE------------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred CcEEEEEcCCCCceee---cc------------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence 9999999998765332 22 2337999999 8999999999999999999999999888887654
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCe----EEEeecCCeEEEEeCC
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY----FISNGKDQTTKLWDIR 260 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~d~~i~iwd~~ 260 (408)
.+.++.+. ...+++++.++.+++|+++.. ..........+...+.++.+.++... +++++.||.|++||++
T Consensus 172 ~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 172 RCYCADVI---YPMAVVATAERGLIVYQLENQ--PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp CEEEEEEE---TTEEEEEEGGGCEEEEECSSS--CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred CceEEEec---CCeeEEEeCCCcEEEEEeccc--cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 67777776 457888899999999998621 11111222234455666666665554 9999999999999998
Q ss_pred CCcCccccccccccccccceeecccccceeeccCCCcceeeeeccccee------eEEEEEeeccccCCCcEEEEeeCCC
Q 015371 261 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR------TLIRCYFSPEYSTAQKYIYTGSSDN 334 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~~dg 334 (408)
..... ..+..+..|.... .....+.+++|+|++++|++|+.||
T Consensus 247 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 247 PPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp CSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred CCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 73210 2233444443210 1111355668899999999999999
Q ss_pred eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 335 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.|++||+.+++++..+..|..+|++++|+|++++|++++.|+..+.|++...
T Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999999999999999999999999999999999999987777766543
No 76
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-41 Score=284.52 Aligned_cols=259 Identities=17% Similarity=0.144 Sum_probs=198.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeecCcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~ 111 (408)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+| ++++|++++.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 356799999999999999999999999999999999876432 1233457788999999986 4899999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCCcc---eeeecCcCCCc
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKC---SLRIPAHKSDV 186 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v 186 (408)
||+.++.......+.. |...|.+++|+|+ +.+|++|+.|+.|++||+..+.. ...+.+|...|
T Consensus 86 Wd~~~~~~~~~~~~~~------------h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v 153 (316)
T 3bg1_A 86 WREENGTWEKSHEHAG------------HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153 (316)
T ss_dssp ECCSSSCCCEEEEECC------------CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred EECCCCcceEEEEccC------------CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence 9998764333333333 3447999999997 78999999999999999987632 34567899999
Q ss_pred eEEEEecCC----------------CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC----CeEE
Q 015371 187 NTVCFADET----------------GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFI 246 (408)
Q Consensus 187 ~~l~~~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~ 246 (408)
.+++|+|.. +.+|++|+.|++|++||++.. ........+.+|...|.+++|+|++ ++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 999999431 468999999999999997410 0114566788999999999999986 7899
Q ss_pred EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 247 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+++.|++|++||++...... .....+..|. ..+++++|+|++++
T Consensus 233 s~s~D~~v~iw~~~~~~~~~------------------------------~~~~~~~~~~------~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNT------------------------------WSPKLLHKFN------DVVWHVSWSITANI 276 (316)
T ss_dssp EEETTCEEEEEECSSTTCCC------------------------------CBCCEEEECS------SCEEEEEECTTTCC
T ss_pred EEcCCCeEEEEEccCccccc------------------------------hhhhhhhcCC------CcEEEEEEcCCCCE
Confidence 99999999999987621100 0011222332 34556689999999
Q ss_pred EEEeeCCCeEEEEECC
Q 015371 327 IYTGSSDNSVYIYDLV 342 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~ 342 (408)
|++++.||.|++|+..
T Consensus 277 las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEESSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEEEC
Confidence 9999999999999975
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.7e-40 Score=288.71 Aligned_cols=277 Identities=24% Similarity=0.332 Sum_probs=228.4
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
+|...|.|+++ ++++|++|+.||.|++||+.+++..... .+|...|.+++| ++++|++|+.||.|++||+.++
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL---TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE---cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 56677998877 7899999999999999999988666543 456678999999 7889999999999999999887
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcce---eeecCcCCCceEEEEecC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS---LRIPAHKSDVNTVCFADE 194 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~ 194 (408)
+.. ..+.. |...|.+++|++ ..+++|+.||.|++||+.+++.. ..+.+|...|.+++|.
T Consensus 204 ~~~--~~~~~------------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 265 (435)
T 1p22_A 204 EML--NTLIH------------HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-- 265 (435)
T ss_dssp CEE--EEECC------------CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--
T ss_pred cEE--EEEcC------------CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--
Confidence 653 22323 334799999974 58999999999999999988765 5678899999999994
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccc
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
++++++|+.||.|++||++ .++.+..+.+|...|.++.++ ++++++++.||.|++||+++
T Consensus 266 -~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~------------- 325 (435)
T 1p22_A 266 -DKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC------------- 325 (435)
T ss_dssp -TTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-------------
T ss_pred -CCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC-------------
Confidence 7899999999999999975 678888899999999999994 78999999999999999987
Q ss_pred ccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc---------
Q 015371 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--------- 345 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------- 345 (408)
+..+..+.+|...... +++ ++.+|++|+.||.|++||+.+++
T Consensus 326 ---------------------~~~~~~~~~h~~~v~~------~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 376 (435)
T 1p22_A 326 ---------------------GACLRVLEGHEELVRC------IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376 (435)
T ss_dssp ---------------------CCEEEEECCCSSCEEE------EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred ---------------------CCEEEEEeCCcCcEEE------EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccch
Confidence 4556677777644332 233 68999999999999999997766
Q ss_pred eeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCCC
Q 015371 346 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 390 (408)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 390 (408)
.+..+.+|.+.|++++| ++++|++++.||.|++||+.+.....
T Consensus 377 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 377 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp EEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred heeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 78899999999999999 67899999999999999998865543
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-40 Score=282.45 Aligned_cols=263 Identities=17% Similarity=0.214 Sum_probs=210.0
Q ss_pred ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC--CceEEEeecCcEEE
Q 015371 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVN 110 (408)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 110 (408)
...+.+|.+.|++++|+|++++||+|+.||.|+||++..... ........|...|.+++|+|+ +++|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 356889999999999999999999999999999999984422 222234567779999999987 99999999999999
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCCc--ceeeecCcCCCc
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDV 186 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v 186 (408)
+||+.+++.........+ ...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+..|...|
T Consensus 83 iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVH------------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEEEETTEEEEEEEECCC------------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EEEcCCCceeEeeeecCC------------CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 999998764444444433 337999999999 9999999999999999998874 344567899999
Q ss_pred eEEEEecC------------CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC---CCeEEEeecC
Q 015371 187 NTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGKD 251 (408)
Q Consensus 187 ~~l~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d 251 (408)
.+++|+|. ++.+|++++.||.|++||++...........+.+|...|.+++|+|+ +++|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 99999943 68999999999999999987433333456678889999999999999 8999999999
Q ss_pred CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee
Q 015371 252 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 331 (408)
|.|++||++....... ..+.....+. ..+.+++|+|++++|++++
T Consensus 231 g~i~iwd~~~~~~~~~-----------------------------~~~~~~~~~~------~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWK-----------------------------KTLLKEEKFP------DVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp SCEEEEEESSTTSCCE-----------------------------EEESSSSCCS------SCEEEEEECSSSCCEEEEE
T ss_pred CEEEEEeCCCCCccce-----------------------------eeeeccccCC------CcEEEEEEcCCCCEEEEec
Confidence 9999999987321100 0111111122 2345567899999999999
Q ss_pred CCCeEEEEECCC
Q 015371 332 SDNSVYIYDLVS 343 (408)
Q Consensus 332 ~dg~i~vwd~~~ 343 (408)
.||.|++|++..
T Consensus 276 ~dg~i~iw~~~~ 287 (379)
T 3jrp_A 276 GDNKVTLWKENL 287 (379)
T ss_dssp SSSSEEEEEEEE
T ss_pred CCCcEEEEeCCC
Confidence 999999999873
No 79
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.6e-41 Score=280.95 Aligned_cols=255 Identities=20% Similarity=0.214 Sum_probs=200.9
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--CCCEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--DGQELVA 158 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~ 158 (408)
..+|...|++++|+|++++|++++.|+.|++||+.++.......+..| ..+|.+++|++ ++++|++
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH------------~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH------------EGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC------------SSCEEEEEECCGGGSSCEEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC------------CccEEEEEeCCCCCCCEEEE
Confidence 346778999999999999999999999999999987654334444444 44899999986 4889999
Q ss_pred EecCCeEEEEECCCCc--ceeeecCcCCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 159 AGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
|+.|+.|++||+++++ ....+.+|...|.+++|+ |+ +.+|++|+.|+.|++||++... .......+.+|...+.
T Consensus 77 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~-p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA-PHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCN 154 (316)
T ss_dssp EETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEEC-CTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBC
T ss_pred EECCCEEEEEECCCCcceEEEEccCCCCceEEEEEC-CCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcc
Confidence 9999999999998874 456678899999999999 54 7899999999999999986210 1112445678999999
Q ss_pred EEEecCC-----------------CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCc
Q 015371 235 FIDSRRD-----------------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 297 (408)
Q Consensus 235 ~~~~~~~-----------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
++.|+|+ +++|++++.|+.|++||++.... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-------------------------------~~ 203 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-------------------------------WK 203 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-------------------------------EE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-------------------------------cc
Confidence 9999997 47899999999999999864110 12
Q ss_pred ceeeeecccceeeEEEEEeeccccCCC----cEEEEeeCCCeEEEEECCCCc----eeEEEccCCCCeeeeeEeCCCCeE
Q 015371 298 SLATYKGHSVLRTLIRCYFSPEYSTAQ----KYIYTGSSDNSVYIYDLVSGA----QVAKLDFHNAPVRDCCWHPIYPML 369 (408)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l 369 (408)
.+..+.+|... +.+++|+|++ ++|++|+.||+|++||+.+.. ....+..|...|.+++|+|++++|
T Consensus 204 ~~~~l~~h~~~------V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 204 EEQKLEAHSDW------VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANIL 277 (316)
T ss_dssp EEECCBCCSSC------EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCE
T ss_pred eeeecccCCCc------eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEE
Confidence 34556666632 3444677776 899999999999999997631 234456788999999999999999
Q ss_pred EeecCCCcEEEEeeCCC
Q 015371 370 ISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 370 ~s~~~dg~v~iw~~~~~ 386 (408)
++++.||.|++|+....
T Consensus 278 as~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEESSSCEEEEEECTT
T ss_pred EEEcCCCeEEEEEECCC
Confidence 99999999999998643
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-38 Score=281.05 Aligned_cols=282 Identities=19% Similarity=0.315 Sum_probs=236.6
Q ss_pred CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
....+.+|.+.|.. ++++++++|++|+.||+|++||+.+++.+... .+|...|.+++|+ ++.|++++.||.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC---CCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE---cCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 34578899987643 35557899999999999999999988666543 4667799999997 679999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 191 (408)
||+.+++.. ..+.. |...|.++.|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 184 wd~~~~~~~--~~~~~------------h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 184 WNAETGECI--HTLYG------------HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EETTTTEEE--EEECC------------CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred EECCcCcEE--EEECC------------CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 999887653 23333 34479999995 568999999999999999999999999999999999998
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 271 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 271 (408)
+++++++|+.||.|++||++ ..+.+..+.+|...|.++.+ ++.++++++.|+.|++||+++
T Consensus 248 ---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~---------- 308 (445)
T 2ovr_B 248 ---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET---------- 308 (445)
T ss_dssp ---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT----------
T ss_pred ---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC----------
Confidence 47889999999999999975 67788888999999999999 789999999999999999987
Q ss_pred cccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 015371 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (408)
++.+..+.+|...... ++++++++++|+.||.|++||+++++.+..+.
T Consensus 309 ------------------------~~~~~~~~~~~~~v~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 309 ------------------------GNCIHTLTGHQSLTSG--------MELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp ------------------------CCEEEEECCCCSCEEE--------EEEETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ------------------------CCEEEEEcCCcccEEE--------EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 3455566666543322 22247899999999999999999999999997
Q ss_pred c---CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 352 F---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 352 ~---~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
. |...|++++|+ +++|++++.||.|++||+.+++.
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 6 88899999996 57999999999999999988654
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.7e-39 Score=272.61 Aligned_cols=288 Identities=17% Similarity=0.235 Sum_probs=224.0
Q ss_pred ceeeEecCC-ccEEEeecCceEEEEEEecC--------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee
Q 015371 4 GREVNYSGR-GRFSAADSCHVLSRYLPVNG--------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 4 ~~~~~~s~d-g~~~~~~~~~~~~~~~~~~~--------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
..+|+|+|+ ++++++++.+...++|.... ...+.+|...|.+++|+|++++|++++.|+.|++|+......
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~ 120 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 120 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce
Confidence 368999998 68999988887777776432 246789999999999999999999999999999999988765
Q ss_pred EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-
Q 015371 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG- 153 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 153 (408)
...... +...+..+.+++++++|++++.|+.+++||+....... ... ..|...+..++|++++
T Consensus 121 ~~~~~~---~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~------------~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 121 TRRFVG---HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQD------------ESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECS------------SSCSSCEEEEEECSCSS
T ss_pred eeeecC---CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEe------------ccccCcccceEEccCCC
Confidence 554433 33378889999999999999999999999987654322 111 2234479999998864
Q ss_pred -CEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCC
Q 015371 154 -QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 232 (408)
Q Consensus 154 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 232 (408)
..+++++.|+.|++||+++++.+..+.+|..+|++++|+ |++++|++|+.||.|++||++ ..+.+..+.. ...
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~----~~~~~~~~~~-~~~ 258 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLN----EGKHLYTLDG-GDI 258 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETT----TTEEEEEEEC-SSC
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEec----cCceeeeecC-Cce
Confidence 578899999999999999999999999999999999999 899999999999999999975 5666666654 468
Q ss_pred eEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE
Q 015371 233 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 312 (408)
Q Consensus 233 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
+.++.|+|++. +++++.|+.|++||++.......... ........+|.
T Consensus 259 v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~h~------ 306 (340)
T 4aow_A 259 INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQ-------------------------EVISTSSKAEP------ 306 (340)
T ss_dssp EEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECC-------------------------C-------CCC------
T ss_pred EEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccc-------------------------cceeeeccCCC------
Confidence 99999999876 55667799999999987322111100 01111222333
Q ss_pred EEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 313 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 313 ~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
..+.+++|+|++++|++|+.||.|++||+++|+
T Consensus 307 ~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 307 PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 234556789999999999999999999999885
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.6e-39 Score=298.53 Aligned_cols=296 Identities=17% Similarity=0.235 Sum_probs=226.1
Q ss_pred eeeEecCCc-cEEEeecCceEEEEEEecC--------ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE
Q 015371 5 REVNYSGRG-RFSAADSCHVLSRYLPVNG--------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI 75 (408)
Q Consensus 5 ~~~~~s~dg-~~~~~~~~~~~~~~~~~~~--------~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~ 75 (408)
.+++|+|++ .++++++.+...++|.... ...+.+|...|.+++|+|++++|++|+.||+|+|||+.++...
T Consensus 386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~ 465 (694)
T 3dm0_A 386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST 465 (694)
T ss_dssp EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce
Confidence 688999875 6899998888888887543 2468899999999999999999999999999999999988666
Q ss_pred EEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC--
Q 015371 76 QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-- 153 (408)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 153 (408)
... .+|...|.+++|+|++++|++++.|++|++||......... ......|...|.+++|+|++
T Consensus 466 ~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 466 RRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI-----------SEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE-----------CSSTTSCSSCEEEEEECSCSSS
T ss_pred eEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee-----------ccCCCCCCCcEEEEEEeCCCCc
Confidence 543 45667899999999999999999999999999865432111 11223566689999999986
Q ss_pred CEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCe
Q 015371 154 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 233 (408)
Q Consensus 154 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 233 (408)
..+++++.|+.|++||+++++....+.+|...|++++|+ +++++|++|+.||.|++||++ .++.+..+. +...|
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~-~~~~v 605 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLE-ANSVI 605 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCB-CSSCE
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEec-CCCcE
Confidence 579999999999999999999999999999999999999 899999999999999999976 555555554 45679
Q ss_pred EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEE
Q 015371 234 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 313 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
.+++|+|++.++++++ ++.|++||+++.............. .......++........
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE---------------------AEKADNSGPAATKRKVI 663 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------------------------------CCC
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccc---------------------cccccccccccCCceeE
Confidence 9999999998777665 6679999998743322111000000 00000000000000011
Q ss_pred EEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 314 CYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 314 ~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
.+.+++|+|+|++|++|+.||.|++||+.
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 23456899999999999999999999985
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-39 Score=282.51 Aligned_cols=295 Identities=12% Similarity=0.096 Sum_probs=226.6
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---------ceeeecccCceeEEEEcCC----C---CeEEEEeCCCcEEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---------PWKVDGMNSRVYTSQFSND----G---SFFVAASQESNIKVY 67 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------~~~l~~h~~~v~~~~~s~~----~---~~l~t~~~dg~i~iw 67 (408)
..+++|+| .++++++.+....+|.... ...+.+|...|.+++|+|+ + ++|++++.||.|++|
T Consensus 19 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw 96 (397)
T 1sq9_A 19 IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 96 (397)
T ss_dssp EEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred eEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence 36899998 6777777776666665443 4567899999999999999 9 999999999999999
Q ss_pred EcCCCee-----EEEecccccc--eeeEEEEEeC----CCCce-EEEeecCcEEEEEECCC------Cceeeee---eee
Q 015371 68 NVDKNWK-----IQKDIETKAL--RWTITDTSLS----PDQRF-LVYASICAIVNIVDVGS------SARESLA---NVT 126 (408)
Q Consensus 68 ~~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~~~dg~i~~w~~~~------~~~~~~~---~~~ 126 (408)
++.++.. .........+ ...|.+++|+ |++++ |++++.||.|++||+.+ .+..... .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 176 (397)
T 1sq9_A 97 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 176 (397)
T ss_dssp EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE
T ss_pred EccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee
Confidence 9987754 4443333222 4689999999 99999 99999999999999987 3322100 111
Q ss_pred eeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC---c---CCCceEEEEecCCCCEEE
Q 015371 127 IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA---H---KSDVNTVCFADETGHLIF 200 (408)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~~l~ 200 (408)
.. ......|...|.+++|+|++ ++++++.||.|++||+++++.+..+.. | ...|.+++|+ +++.+|+
T Consensus 177 ~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~ 249 (397)
T 1sq9_A 177 GT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLA 249 (397)
T ss_dssp EE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEE
T ss_pred ee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEE
Confidence 00 00112344579999999999 999999999999999999999999988 8 9999999999 8899999
Q ss_pred EecCC---CeEEEEeccccccCCccceeeec-------------ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 201 SGSDD---SLCKVWDRRCFISKGRANGVLMG-------------HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 201 ~~~~d---g~i~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
+++.| |.|++||++ ..+.+..+.+ |...|.+++|+|++++|++++.||.|++||+++..
T Consensus 250 ~~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 324 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETE----FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE- 324 (397)
T ss_dssp EEEEETTEEEEEEEETT----TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-
T ss_pred EEecCCCCceEEEEECC----CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-
Confidence 99999 999999976 6677788888 99999999999999999999999999999998732
Q ss_pred ccccccccccccccceeecccccceeeccCCCcceeeee------cccc---------eeeEEEEEeeccccCCC-----
Q 015371 265 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK------GHSV---------LRTLIRCYFSPEYSTAQ----- 324 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~~~~s~~~----- 324 (408)
.+..+. .|.. .......+..++|+|++
T Consensus 325 ---------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 325 ---------------------------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp ---------------------------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred ---------------------------------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 233333 2200 00001234455788888
Q ss_pred -----cEEEEeeCCCeEEEEECCCCc
Q 015371 325 -----KYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 325 -----~~l~~~~~dg~i~vwd~~~~~ 345 (408)
++|++++.||.|++||+.+++
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=285.31 Aligned_cols=291 Identities=9% Similarity=0.037 Sum_probs=217.9
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
.+++|||||+++++++.+...+ .......+.+|...|++++|+|+| .++.+.+|+.+.. . .... .+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---~-~~~~-~~ 84 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN---G-LLNS-QP 84 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS---C-SSTT-SC
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc---e-Eeec-CC
Confidence 5799999999999999999888 455566778999999999999999 4666666664332 1 1111 22
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
...|.+++|+|+|+.||+++.||.|++||..+ ....+. +.. .-....+.+++|+|||++|++|+.||.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~-------~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKG-------NLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSS-------CSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCC-------ccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 55899999999999999999999999999543 122222 211 000124999999999999999999999
Q ss_pred EEEEECCCCcc-------eeee----cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCc---cceee-ecc
Q 015371 165 IYVYDLQANKC-------SLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR---ANGVL-MGH 229 (408)
Q Consensus 165 i~i~d~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~-~~~ 229 (408)
|++||+.++.. +..+ .+|...|.+++|+ |++ +++++.|++|++||+. ... ....+ .+|
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~----~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVS----ASSHQPVSRMIQNAS 225 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCC----SSSSCCCEEEEECCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECC----CCccccceeeecccc
Confidence 99999998753 4555 6788899999999 777 7888999999999975 222 22445 478
Q ss_pred cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee-cccce
Q 015371 230 LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVL 308 (408)
Q Consensus 230 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 308 (408)
...|.+++|+ ++.|++++ +++|++||+.+ .....+. +|...
T Consensus 226 ~~~V~svaFs--g~~LASa~-~~tIkLWd~~~-----------------------------------~~~~~~~~gh~~~ 267 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC-PGYVHKIDLKN-----------------------------------YSISSLKTGSLEN 267 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC-SSEEEEEETTT-----------------------------------TEEEEEECSCCSC
T ss_pred cCcEEEEEEE--CCEEEEEe-CCeEEEEECCC-----------------------------------CeEEEEEcCCCce
Confidence 8999999999 68888887 69999999987 2222222 55532
Q ss_pred eeEEEEEeeccc--cCCCcEEEEeeCCCeEEEEECCC-----------------------CceeEEEccCCCCeeeeeEe
Q 015371 309 RTLIRCYFSPEY--STAQKYIYTGSSDNSVYIYDLVS-----------------------GAQVAKLDFHNAPVRDCCWH 363 (408)
Q Consensus 309 ~~~~~~~~~~~~--s~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~ 363 (408)
++.++| +|++..++++++||. ++|.... ++.+..+. +...|++++||
T Consensus 268 ------V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~S 339 (588)
T 2j04_A 268 ------FHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLS 339 (588)
T ss_dssp ------CCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEEC
T ss_pred ------EEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEEC
Confidence 233367 888889999998998 8888641 11111222 23458999999
Q ss_pred CCCCeEEeecC
Q 015371 364 PIYPMLISSSW 374 (408)
Q Consensus 364 ~~~~~l~s~~~ 374 (408)
|||+.+|+++.
T Consensus 340 PdG~~lA~~~~ 350 (588)
T 2j04_A 340 PDGYSIAIVYD 350 (588)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999998864
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-39 Score=278.88 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=202.6
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC-----ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
..+++|+|||+++++++.+....++.... ...+.+|...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~- 89 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT- 89 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee-
Confidence 46899999999999887666666665443 356789999999999999999999999999999999988754333
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
.....|...|.+++|+|++++|++++.|+.|++||+............ ...|...|.+++|+|++++|++
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI----------KKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE----------CTTCCSCEEEEEECTTSSEEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee----------ecccCCCeeEEEEcCCCCEEEE
Confidence 233456668999999999999999999999999999876531111100 1223447999999999999999
Q ss_pred EecCCeEEEEEC------------------CCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 159 AGSDNFIYVYDL------------------QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 159 ~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
++.||.|++||+ ..++.+..+..|...|.+++|+ +++++|++++.|+.|++||++ .+
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~----~~ 234 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADAD----KK 234 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGG----GT
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECC----CC
Confidence 999999999995 3667788888999999999999 889999999999999999976 67
Q ss_pred ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 221 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 221 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+.+..+..|...|.+++|+|++.+++++ .|+.|++|+++.
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 7888899999999999999999988877 899999999987
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-39 Score=275.84 Aligned_cols=295 Identities=13% Similarity=0.101 Sum_probs=237.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++|+|||+++++++.+....+|.... ...+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 113 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK- 113 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-
Confidence 46899999999999888777666666433 35677999999999999999999999999999999999887665543
Q ss_pred cccceeeEEEEEeCCCCceEEEeecC-----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQE 155 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (408)
+...|.+++|+|++++|++++.+ +.|++||+................. ...........+.+++|+|++++
T Consensus 114 ---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 114 ---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI-HKIITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS-EEEECCTTCCCEEEEEECGGGCE
T ss_pred ---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee-eeccCCcCccceeEEEEcCCCCE
Confidence 44579999999999999999998 9999999976643221111110000 00001111226999999999999
Q ss_pred EEEEecCCeEEEEECCC-CcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 156 LVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
|++++.||.|++||+.+ ++.+..+..|...|.+++|+ +++++|++++.|+.|++||++ .......+. +...+.
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~~~ 263 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCPLN 263 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSCEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCCce
Confidence 99999999999999998 78888888999999999999 899999999999999999975 556666665 778999
Q ss_pred EEEecCCCCeEEEeecCC--------------eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee
Q 015371 235 FIDSRRDGRYFISNGKDQ--------------TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
.+.|+|+++++++++.++ .+++||+.+ .+.+.
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------------------------------~~~~~ 309 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF----------------------------------EEEIG 309 (369)
T ss_dssp EEEECSSSSEEEEEECCC-------------CEEEEEETTT----------------------------------CCEEE
T ss_pred eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC----------------------------------Ccchh
Confidence 999999999999999988 788888876 45566
Q ss_pred eeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 015371 301 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (408)
.+.+|... +.+++|+|++++|++++.||.|++|++.++.....
T Consensus 310 ~~~~~~~~------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 310 RVQGHFGP------LNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp EEECCSSC------EEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred heecccCc------EEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 67777633 34457889999999999999999999987654433
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-39 Score=278.23 Aligned_cols=282 Identities=13% Similarity=0.123 Sum_probs=210.1
Q ss_pred ceeeEecCCccEEEeecCce-------EEEEEEecC-------------ceeeecccCceeEEEEcCCCCeEEEE-----
Q 015371 4 GREVNYSGRGRFSAADSCHV-------LSRYLPVNG-------------PWKVDGMNSRVYTSQFSNDGSFFVAA----- 58 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~-------~~~~~~~~~-------------~~~l~~h~~~v~~~~~s~~~~~l~t~----- 58 (408)
..+++|+|||+++++++... ..++|.... ...|.+|.+.|.+++++ ++.+++|
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 36899999999999876421 133443221 12467888999988765 4566665
Q ss_pred ------eCCCcEEEEEcCCCeeEEEe------cccccceeeEEEEEeCCCCceEEEee--cCcEEEEEECCCCceeeeee
Q 015371 59 ------SQESNIKVYNVDKNWKIQKD------IETKALRWTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 59 ------~~dg~i~iw~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~ 124 (408)
+.|+.+++|++......... .....+...+.+++|+|||++|++++ .|++|++||+.+.+....
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~-- 172 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE-- 172 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE--
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE--
Confidence 35778999998765322211 12223344688999999999987554 689999999998765332
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee--eecCcCCCceEEEEecCCCCEEEEe
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSG 202 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~~~ 202 (408)
+. + ...|.+++|+|||+++++++. +.+.+|+..+++.+. ....|...|.+++|+ |++.+++++
T Consensus 173 ~~-~------------~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~ 237 (365)
T 4h5i_A 173 IE-T------------RGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIAA 237 (365)
T ss_dssp EE-C------------SSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEEE
T ss_pred eC-C------------CCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEEE
Confidence 22 2 226999999999999999985 456777777776554 345688899999999 889999999
Q ss_pred cCCC----eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccc
Q 015371 203 SDDS----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 278 (408)
Q Consensus 203 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 278 (408)
+.|+ .+++|++............+.+|...|++++|+|+|++|++|+.|+.|++||+++
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~----------------- 300 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD----------------- 300 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-----------------
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-----------------
Confidence 8887 6888987532222333456788999999999999999999999999999999987
Q ss_pred ceeecccccceeeccCCCcceeee-ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 279 YRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
++++..+ .+|... +.+++|||||++||+|+.|++|+|||+...
T Consensus 301 -----------------~~~~~~~~~gH~~~------V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 -----------------LSMSKIFKQAHSFA------ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -----------------TEEEEEETTSSSSC------EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -----------------CcEEEEecCcccCC------EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4555554 677743 445589999999999999999999999643
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-38 Score=274.50 Aligned_cols=277 Identities=10% Similarity=0.117 Sum_probs=216.6
Q ss_pred ceeeEecCCc-cEEEeecCceEEEEEEecCc---eee--ecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEE
Q 015371 4 GREVNYSGRG-RFSAADSCHVLSRYLPVNGP---WKV--DGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ 76 (408)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~~~~~~~~~~~~~---~~l--~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~ 76 (408)
..+++|+|+| +++++++.+....+|..... ..+ .+|.+.|.+++|+| ++++|++++.|+.|++||+.+ ....
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~ 154 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQ 154 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceE
Confidence 4689999999 89998887777777776532 223 37999999999999 789999999999999999986 4555
Q ss_pred EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-E
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-E 155 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 155 (408)
.......+...|.+++|+|++++|++++.|+.|++||+... . ...+..+ ...|.+++|+|+++ +
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~--~~~~~~h------------~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-E--IFKEKLH------------KAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-E--EEEEECS------------SSCEEEEEECSSCTTE
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-E--EEEeccC------------CCcEEEEEECCCCCCE
Confidence 55555556678999999999999999999999999999432 2 2333333 34799999999999 8
Q ss_pred EEEEecCCeEEEEECCC----CcceeeecCcCCCceEEEEecC-CCCEEEEecCCCeEEEEeccccccCCccceeeeccc
Q 015371 156 LVAAGSDNFIYVYDLQA----NKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
+++++.|+.|++||+++ +..+..+ +|...|.+++|+ + ++.+|++++.|+.|++||++ .......+.+|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~ 293 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIHP 293 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETT----BTTSCSEEEECC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECC----CCcccccccccc
Confidence 99999999999999987 5555555 699999999999 6 99999999999999999986 333434444332
Q ss_pred -----------------CCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 231 -----------------EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 231 -----------------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
..+..+.++|++++ +++.|+.|++||+++
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~-------------------------------- 339 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS-------------------------------- 339 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT--------------------------------
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC--------------------------------
Confidence 34555778888877 888999999999987
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
++.+..+.++... ..+..++|+|++++|++|+ ||.|++||+++
T Consensus 340 --~~~~~~l~~~~~~----~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 --GGLVHQLRDPNAA----GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp --CCEEEEECBTTBC----SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred --CceeeeecCCCCC----ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 3445555543211 1122236888999999997 99999999864
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-40 Score=290.33 Aligned_cols=268 Identities=11% Similarity=0.043 Sum_probs=200.4
Q ss_pred cccCceeEEEEcCCC---------CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 38 GMNSRVYTSQFSNDG---------SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~---------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
.+.+.|.+|+|+|++ ++||+|+.++.. . ..+|+++.+++++.|++
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------~--------~~~~~~~~laS~s~D~t 184 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------E--------PLNEHLEMFDKEKHSSC 184 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEE
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------C--------ccchhhhhhccCCCCce
Confidence 467899999999987 799999876420 0 13689999999999999
Q ss_pred EEEEECCCCceeee--eeeeeeeeeeeecCCCCCccceEEEEEcCC------CCEEEEEecCCeEEEEECCCCcc-----
Q 015371 109 VNIVDVGSSARESL--ANVTIHKGLDFSADGDEDEFGIFSVKFSTD------GQELVAAGSDNFIYVYDLQANKC----- 175 (408)
Q Consensus 109 i~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~----- 175 (408)
|+||++.+++.... ..+..+ ...|.+++|+|+ +.+|++++.||.|++||+.+++.
T Consensus 185 I~iWd~~~~~~~~~~~~~l~~~------------~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIVHS------------FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEEEC------------CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred EEEEEccCCCCCceEEEEEEec------------CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 99999987653211 112222 236999999996 57999999999999999987642
Q ss_pred ------eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEE--EecCCC-CeEE
Q 015371 176 ------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI--DSRRDG-RYFI 246 (408)
Q Consensus 176 ------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~ 246 (408)
...+.+|...|++++|+ ++ ..|++|+.||+|++||++. ...+...+.+|...|.++ .|+|++ .+|+
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~---~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFL-SP-TTVVCGFKNGFVAEFDLTD---PEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEES-SS-SEEEEEETTSEEEEEETTB---CSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred eeecCceEEEEcCCCCEEEEEec-CC-CeEEEEeCCCEEEEEECCC---CCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 23567899999999999 43 4899999999999999862 224456688999999999 578887 8999
Q ss_pred EeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 247 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+++.|++|++||+++. +....+.+|.... .+.+++|+|+++.
T Consensus 328 S~S~D~tvklWD~~~~----------------------------------~~~~~~~~~~~~~----~v~~v~fsp~~~~ 369 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDI----------------------------------ATTKTTVSRFRGS----NLVPVVYCPQIYS 369 (524)
T ss_dssp EEETTSEEEEECGGGH----------------------------------HHHCEEEEECSCC----SCCCEEEETTTTE
T ss_pred EeccCCeEEEEECCCC----------------------------------CcccccccccccC----cccceEeCCCcCe
Confidence 9999999999999872 2333333332111 1234578889999
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.||+|++||+...
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999998889999999999999999999999999999999998653
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-39 Score=279.45 Aligned_cols=240 Identities=12% Similarity=0.053 Sum_probs=185.9
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec-----CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN-----GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~-----~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
..+++|+|||+++++++.+....++... ....+.+|.+.|.+++|+|++++|++++.|++|++||+.++......
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 4689999999999987655544444433 34568899999999999999999999999999999999887522223
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee-eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE-SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
.....|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.. .|...|.+++|+|++++|+
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-----------PLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-----------SCCSCEEEEEECTTSSEEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-----------ccCCCeEEEEEcCCCCEEE
Confidence 344557779999999999999999999999999999876521 1112221 1344799999999999999
Q ss_pred EEecCCeEEEEECC------------------CCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 158 AAGSDNFIYVYDLQ------------------ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 158 ~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
+++.|+.|++||+. .++++..+ .|...|.+++|+ |++++|++++.||.|++||++ .
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~----~ 236 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPS----A 236 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEEC----S
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECC----C
Confidence 99999999999985 24455566 899999999999 899999999999999999986 4
Q ss_pred Ccc----ceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 220 GRA----NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 220 ~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+.. +..+.+|...|.+++|+|++++|++++.++.+ +|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 444 77888999999999999999999998866655 776653
No 91
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=277.92 Aligned_cols=310 Identities=15% Similarity=0.069 Sum_probs=223.3
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe---eEEEeccc-----------------------------------
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW---KIQKDIET----------------------------------- 81 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~----------------------------------- 81 (408)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999977766 46789999998886 33222110
Q ss_pred ----------------ccceeeEEEEEeCCCCceE-EEeecCcEEEEEECC--CCceeeeeeeeeeeeeeeecCCCCCcc
Q 015371 82 ----------------KALRWTITDTSLSPDQRFL-VYASICAIVNIVDVG--SSARESLANVTIHKGLDFSADGDEDEF 142 (408)
Q Consensus 82 ----------------~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (408)
..|...|.+++|+|++++| ++++.||.|++||+. +++.........+ ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------~~ 150 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF------------SK 150 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC------------SS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC------------CC
Confidence 1233369999999999996 888899999999998 5544322221122 22
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee----eecCcCCCceEEEEecCC---CCEEEEecCCCeEEEEeccc
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL----RIPAHKSDVNTVCFADET---GHLIFSGSDDSLCKVWDRRC 215 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~l~~~~~~---~~~l~~~~~dg~i~iwd~~~ 215 (408)
.|.+++|+|++++|++++.+|.|++|++.+++... .+.+|...|++++|+ |+ +.+|++++.|+.|++||++
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~- 228 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHYP- 228 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEES-
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEECC-
Confidence 69999999999999999999999999998877554 678899999999999 77 8899999999999999975
Q ss_pred cccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccc--ccccccceeecccccceeec
Q 015371 216 FISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL--RDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 216 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 292 (408)
.+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++........... ..+...
T Consensus 229 ---~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-------------- 290 (450)
T 2vdu_B 229 ---QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND-------------- 290 (450)
T ss_dssp ---CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT--------------
T ss_pred ---CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh--------------
Confidence 5555555 56899999999999 99999999999999999998854322211000 000000
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCCeEEEEEC--CCC---ceeEEEccCCCCeeeeeEeCCC
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDL--VSG---AQVAKLDFHNAPVRDCCWHPIY 366 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~v~~~~~~~~~ 366 (408)
....+ ..+.... .......+..+.++|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++
T Consensus 291 -~~~~~-~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 291 -QHLAP-PRFQNEN-NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp -TSBC------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred -ccccc-ccccccc-cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 00000 0000000 000011233456788999999999 8999999999 555 677778877 889999999964
Q ss_pred CeEEeecC------CCcEEEEeeCCC
Q 015371 367 PMLISSSW------DCNIVRWEIPGI 386 (408)
Q Consensus 367 ~~l~s~~~------dg~v~iw~~~~~ 386 (408)
.++++++. +..|.+|.+...
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEEecccCCCCCCcceEEEEEEcC
Confidence 34444443 556899988654
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.2e-39 Score=278.81 Aligned_cols=290 Identities=16% Similarity=0.209 Sum_probs=228.5
Q ss_pred cCceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeE-EEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCC
Q 015371 40 NSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~ 116 (408)
......++++|+...++ +++.||.|+||++...... .......+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 34455688998875444 5788999999999765333 22233567888999999999 999999999999999999988
Q ss_pred Cce-----eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcceeee--cCcCCCceE
Q 015371 117 SAR-----ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNT 188 (408)
Q Consensus 117 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~ 188 (408)
+.. .....+.. |...|.+++|+|++ .+|++++.|+.|++||+++++.+..+ ..|...|.+
T Consensus 114 ~~~~~~~~~~~~~~~~------------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 114 GGLVLPLREPVITLEG------------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp TCCSSCBCSCSEEEEC------------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred CCCccccCCceEEecC------------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence 743 11222222 34489999999998 69999999999999999999999888 789999999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-ecccCC-eEEEEecCCCCeEEEe---ecCCeEEEEeCCCCc
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEG-ITFIDSRRDGRYFISN---GKDQTTKLWDIRKMS 263 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~ 263 (408)
++|+ +++++|++++.||.|++||++ .++.+..+ .+|.+. +.++.|+|++++|+++ +.|+.|++||+++..
T Consensus 182 ~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 182 VDWS-RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEC-TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEC-CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 9999 799999999999999999976 56677777 678776 8999999999999998 789999999998733
Q ss_pred CccccccccccccccceeecccccceeeccCCCcceeeee-cccceeeEEEEEeeccccCCCcEEEE-eeCCCeEEEEEC
Q 015371 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYT-GSSDNSVYIYDL 341 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~vwd~ 341 (408)
. .+.... .+. ..+..++|+|++++|++ |+.||.|++||+
T Consensus 257 ~---------------------------------~~~~~~~~~~------~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 257 E---------------------------------PLSLQELDTS------SGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp S---------------------------------CSEEEECCCC------SSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred C---------------------------------CceEEeccCC------CceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 1 111111 111 12334578889999864 557999999999
Q ss_pred CCCce-eEEEcc--CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 342 VSGAQ-VAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 342 ~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.+++. +..+.. |..+|.+++|+|++.++++ .|+.+++|++.+..
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 298 TSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred cCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 98874 444443 5689999999999988765 46699999998753
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=269.15 Aligned_cols=304 Identities=13% Similarity=0.135 Sum_probs=221.5
Q ss_pred ceeeEecCCcc-EEEeecC---ceEEEEEEecCc----eeeecccCceeEEEEcCC---CCeEEEEeCCCcEEEEEcCCC
Q 015371 4 GREVNYSGRGR-FSAADSC---HVLSRYLPVNGP----WKVDGMNSRVYTSQFSND---GSFFVAASQESNIKVYNVDKN 72 (408)
Q Consensus 4 ~~~~~~s~dg~-~~~~~~~---~~~~~~~~~~~~----~~l~~h~~~v~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~ 72 (408)
..+++|+|++. ++++++. +....+|..... ....+|...|.+++|+|+ +++|++|+.||.|++||+.++
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 100 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP 100 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC
Confidence 46899999995 5555543 555566665442 223489999999999998 699999999999999999887
Q ss_pred e-eEEEecccccceeeEEEE------EeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE
Q 015371 73 W-KIQKDIETKALRWTITDT------SLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF 145 (408)
Q Consensus 73 ~-~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (408)
. .+.. ...|...|.++ +|+|++++|++++.||.|++||+.+++.. ...+..+. ..+...+.
T Consensus 101 ~~~~~~---~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~--------~~~~~~v~ 168 (357)
T 3i2n_A 101 EMPVYS---VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP-VANMEPVQ--------GENKRDCW 168 (357)
T ss_dssp SSCSEE---ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-SEEECCCT--------TSCCCCEE
T ss_pred CccEEE---EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-ceeccccC--------CCCCCceE
Confidence 5 3333 34566689999 56789999999999999999999876521 12221111 11123688
Q ss_pred EEE----EcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecC---CCCEEEEecCCCeEEEEecccccc
Q 015371 146 SVK----FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE---TGHLIFSGSDDSLCKVWDRRCFIS 218 (408)
Q Consensus 146 ~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~ 218 (408)
+++ |+|+++++++++.||.|++||+++++.... ..|...|.+++|+ | ++.+|++++.||.|++||++.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~--- 243 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMRT--- 243 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEEE---
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCcC---
Confidence 888 788999999999999999999999886444 5688999999999 6 899999999999999999873
Q ss_pred CCccceee-----ecccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 219 KGRANGVL-----MGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 219 ~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
......+ .+|...|.+++|+|+++ +|++++.||.|++||++............... ..
T Consensus 244 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~---------------~~ 307 (357)
T 3i2n_A 244 -QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM---------------GV 307 (357)
T ss_dssp -EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC---------------CC
T ss_pred -CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc---------------cc
Confidence 3333333 48999999999999998 89999999999999998744322110000000 00
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEE-EeeCCCeEEEEECCCCce
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~ 346 (408)
......+..+.+|.. .+.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 308 ~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQ------PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCEEEEEEEEECCSS------CEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccceeeccccCCC------CeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 001134555666653 344557889999998 899999999999987654
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-38 Score=272.16 Aligned_cols=255 Identities=19% Similarity=0.239 Sum_probs=210.2
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELV 157 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~ 157 (408)
...+|...|.+++|+|++++|++++.||.|++|++..........+..+ ..+|.+++|+++ +++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH------------EGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC------------SSCEEEEEECCGGGCSEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC------------CCcEEEEEeCCCCCCCEEE
Confidence 3456778999999999999999999999999999986554444444444 348999999987 99999
Q ss_pred EEecCCeEEEEECCCCc--ceeeecCcCCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCCccceeeecccCCe
Q 015371 158 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 233 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 233 (408)
+++.||.|++||+.+++ ....+..|...|.+++|+ ++ +.+|++++.|+.|++||++. ........+..|...|
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCT--TSCCCEEEEECCTTCE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCC--CCceeeEEecCCCCce
Confidence 99999999999999887 677778899999999999 66 89999999999999999862 2234455677899999
Q ss_pred EEEEecC-------------CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee
Q 015371 234 TFIDSRR-------------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300 (408)
Q Consensus 234 ~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
.+++|+| ++.+|++++.|+.|++||++..... .....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------~~~~~ 200 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 200 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------eeeEE
Confidence 9999999 6999999999999999999863211 12334
Q ss_pred eeecccceeeEEEEEeeccccCC---CcEEEEeeCCCeEEEEECCCCc---eeEEE--ccCCCCeeeeeEeCCCCeEEee
Q 015371 301 TYKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA---QVAKL--DFHNAPVRDCCWHPIYPMLISS 372 (408)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~s~ 372 (408)
.+.+|.. .+.+++|+|+ +++|++++.||.|++||+.+++ ....+ ..|...|++++|+|++++|+++
T Consensus 201 ~~~~h~~------~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 201 TLEGHSD------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EECCCSS------CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEecccC------cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 5555653 2345578999 8999999999999999998864 22222 3488899999999999999999
Q ss_pred cCCCcEEEEeeCC
Q 015371 373 SWDCNIVRWEIPG 385 (408)
Q Consensus 373 ~~dg~v~iw~~~~ 385 (408)
+.||.|++|++..
T Consensus 275 ~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 275 GGDNKVTLWKENL 287 (379)
T ss_dssp ESSSSEEEEEEEE
T ss_pred cCCCcEEEEeCCC
Confidence 9999999999984
No 95
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-38 Score=271.56 Aligned_cols=287 Identities=14% Similarity=0.190 Sum_probs=219.7
Q ss_pred ceeeEecCC---cc--EEEeecCceEEEEEEec---Cceeeec-----ccCceeEEEEcCC----CCeEEEEeCCCcEEE
Q 015371 4 GREVNYSGR---GR--FSAADSCHVLSRYLPVN---GPWKVDG-----MNSRVYTSQFSND----GSFFVAASQESNIKV 66 (408)
Q Consensus 4 ~~~~~~s~d---g~--~~~~~~~~~~~~~~~~~---~~~~l~~-----h~~~v~~~~~s~~----~~~l~t~~~dg~i~i 66 (408)
..+++|+|+ +. ++++++.. ...+|... ....+.. |...|++++|+|+ +++|++|+.||.|++
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSN-RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETT-EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCC-EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 468999984 33 55555444 34444433 2234443 5678999999999 679999999999999
Q ss_pred EEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE
Q 015371 67 YNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF 145 (408)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (408)
||+.+++.+... ..|...|.+++|+| ++++|++++.||.|++||+.+++....... ...|...|.
T Consensus 100 ~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~v~ 165 (366)
T 3k26_A 100 INPITMQCIKHY---VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-----------VEGHRDEVL 165 (366)
T ss_dssp ECTTTCCEEEEE---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS-----------TTSCSSCEE
T ss_pred EEchhceEeeee---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc-----------cccccCcee
Confidence 999988666543 35666899999999 999999999999999999988765322210 112444799
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC----------------------------cCCCceEEEEecCCCC
Q 015371 146 SVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA----------------------------HKSDVNTVCFADETGH 197 (408)
Q Consensus 146 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~v~~l~~~~~~~~ 197 (408)
+++|+|++++|++++.||.|++||+++++....+.. |...|.+++|+ ++
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~ 242 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GD 242 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TT
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CC
Confidence 999999999999999999999999998766554433 89999999998 66
Q ss_pred EEEEecCCCeEEEEecccccc----------CCccceeeecccCCeEEEEecCC--CCeEEEeecCCeEEEEeCCCCcCc
Q 015371 198 LIFSGSDDSLCKVWDRRCFIS----------KGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
++++++.|+.|++||++.... ....+..+..|...|.+++|+|+ +++|++++.||.|++||+++....
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 999999999999999863211 11346677889999999999999 999999999999999999874321
Q ss_pred cccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 266 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
. .....+..|... ..+.+++|+|++++|++++.||.|++||+.
T Consensus 323 ~------------------------------~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 K------------------------------AKCTTLTHHKCG----AAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp G------------------------------CEEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred c------------------------------ccceEEcccccC----CceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 1 123345555211 223445788899999999999999999985
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=284.17 Aligned_cols=278 Identities=13% Similarity=0.139 Sum_probs=218.6
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCC---Cceee-
Q 015371 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS---SARES- 121 (408)
Q Consensus 47 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~---~~~~~- 121 (408)
.|+|+++.+++++ .|+.. ++.+... ..+|...|++++|+| ++++|++|+.||.|++||+.+ +....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~~~--~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIATL--MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEEEE--CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------ccccc-ceEEeee--ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4677787777665 48743 4344433 245667999999999 999999999999999999876 32110
Q ss_pred eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC---CCcceeeecC------------cCCCc
Q 015371 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---ANKCSLRIPA------------HKSDV 186 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~------------~~~~v 186 (408)
.... . |..+|.+++|+|++++|++++.||.|++||++ +++....+.. +...+
T Consensus 105 ~~~~-~------------h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 171 (437)
T 3gre_A 105 SLTY-D------------CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYA 171 (437)
T ss_dssp SEEE-E------------CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCE
T ss_pred eeec-c------------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCc
Confidence 1111 1 33479999999999999999999999999994 4544433321 45566
Q ss_pred eEEE--EecCCCCEEEEecCCCeEEEEeccccccCCccceeeec--ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 187 NTVC--FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 187 ~~l~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
.++. ++ +++.+|++++.|+.|++||++ ..+.+..+.+ |...|++++|+|++++|++++.||.|++||++.
T Consensus 172 ~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~- 245 (437)
T 3gre_A 172 VRMRAFVN-EEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF- 245 (437)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-
T ss_pred eEEEEEEc-CCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-
Confidence 6666 44 678999999999999999976 6777888887 899999999999999999999999999999987
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeee-cccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
...+..+. .+. ..+....+++.|++++.+|++|+.||.|++||+
T Consensus 246 ---------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 246 ---------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp ---------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred ---------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 34445443 333 245566788899999999999999999999999
Q ss_pred CCCceeEEEccC--------------------------CCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 342 VSGAQVAKLDFH--------------------------NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 342 ~~~~~~~~~~~~--------------------------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+++.+..+.+| ...|++++|+ ++++|++++.||.|++||+.+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 999988877644 4457788888 678999999999999999987654
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.1e-37 Score=267.54 Aligned_cols=294 Identities=13% Similarity=0.230 Sum_probs=222.6
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCc-----eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGP-----WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
-..|+||+++ +++.+. +...++|..... ..+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.+...
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 3578999876 555443 445566664432 234578899999999999999999999999999999998766553
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
.+|...+.++++ ++..|++++.|+.+++||....... ...+..+ ...+..+.++|+++++++
T Consensus 186 ---~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h------------~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 186 ---TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGH------------SQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp ---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE-EEEEECC------------SSCEEEEEECTTSSEEEE
T ss_pred ---eCCCCceEEEee--CCCEEEEEeCCCceeEeeeccccee-eEEeccc------------ccceeeeeecCCCCeeee
Confidence 456668888877 4789999999999999998765432 2223333 337999999999999999
Q ss_pred EecCCeEEEEECCCCcc----eeeecCcCCCceEEEEecCCCCEEEE--ecCCCeEEEEeccccccCCccceeeecccCC
Q 015371 159 AGSDNFIYVYDLQANKC----SLRIPAHKSDVNTVCFADETGHLIFS--GSDDSLCKVWDRRCFISKGRANGVLMGHLEG 232 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 232 (408)
++.|+.+++|+..+++. +.....|...|.+++|+|.+..++++ |+.|++|++||++ .+.....+.. ...
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~-~~~ 322 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDA-HSQ 322 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEEC-SSC
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeecc-ccc
Confidence 99999999999987653 44567799999999999777777776 4689999999975 6666666654 467
Q ss_pred eEEEEecCCCCeEEEee--cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 233 ITFIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 233 i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
+.++.|+|+++.+++++ .|+.|++||+++ .+.+..+.+|...
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~~-- 366 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTSR-- 366 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCSSC--
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCC----------------------------------CcEEEEEcCCCCC--
Confidence 88999999999888765 689999999987 5677888888743
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeE
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (408)
+.+++|+|||++|++|+.|++|++||+....+....+.+...+....+
T Consensus 367 ----V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 367 ----VLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp ----EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred ----EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 445578999999999999999999999887766666555544443333
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=297.12 Aligned_cols=262 Identities=17% Similarity=0.217 Sum_probs=207.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC--CceEEEeecCcEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~ 111 (408)
..+.+|.+.|++++|+|++++|++|+.||.|+||++.++.. .......+|..+|.+++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45789999999999999999999999999999999985422 222344567779999999988 999999999999999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEEEecCCeEEEEECCCCc--ceeeecCcCCCce
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDVN 187 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~ 187 (408)
||+.+++.........+ ..+|.+++|+|+ ++.+++|+.||.|++||+.++. ....+.+|...|.
T Consensus 82 wd~~~~~~~~~~~~~~h------------~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVH------------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (753)
T ss_dssp EEEETTEEEEEEEECCC------------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred EECCCCcccccccccCC------------CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence 99988764444444433 347999999999 9999999999999999998873 3445678999999
Q ss_pred EEEEecC------------CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCC---CCeEEEeecCC
Q 015371 188 TVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGKDQ 252 (408)
Q Consensus 188 ~l~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~ 252 (408)
+++|+|. ++.++++|+.||.|++||++...........+.+|...|++++|+|+ +++|++++.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 9999943 58999999999999999987433333566778899999999999999 89999999999
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 332 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 332 (408)
.|++||+++...... ........+. ..+.+++|+|++++|++|+.
T Consensus 230 ~I~iwd~~~~~~~~~-----------------------------~~~~~~~~~~------~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 230 TCIIWTQDNEQGPWK-----------------------------KTLLKEEKFP------DVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp CEEEEEESSSSSCCB-----------------------------CCBSSSSCCS------SCCCCEEECTTTCCEEEECS
T ss_pred EEEEecCCCCCCcce-----------------------------eEEeccCCCC------CceEEEEEcCCCCEEEEEcC
Confidence 999999987431110 0111112222 22445578899999999999
Q ss_pred CCeEEEEECCC
Q 015371 333 DNSVYIYDLVS 343 (408)
Q Consensus 333 dg~i~vwd~~~ 343 (408)
||.|++||+.+
T Consensus 275 Dg~I~vwd~~~ 285 (753)
T 3jro_A 275 DNKVTLWKENL 285 (753)
T ss_dssp SSCEECCBCCS
T ss_pred CCEEEEEecCC
Confidence 99999999874
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.7e-38 Score=273.86 Aligned_cols=253 Identities=17% Similarity=0.267 Sum_probs=206.7
Q ss_pred cccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCC--------ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC
Q 015371 81 TKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSS--------ARESLANVTIHKGLDFSADGDEDEFGIFSVKFST 151 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (408)
...|.+.|++++|+|+ +.+|++++.+|.|++|++... .......+.. |...|.+++|+|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~l~~~~ 191 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG------------HQKEGYGLSWNP 191 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC------------CSSCCCCEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC------------CCCCeEEEEeCC
Confidence 4456778999999997 789999999999999999762 1222222222 344799999999
Q ss_pred CCC-EEEEEecCCeEEEEECCCCcc-------eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccc
Q 015371 152 DGQ-ELVAAGSDNFIYVYDLQANKC-------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN 223 (408)
Q Consensus 152 ~~~-~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 223 (408)
++. +|++|+.||.|++||+.++.. ...+..|...|.+++|+|.++.+|++++.||.|++||++... .....
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcce
Confidence 988 999999999999999987432 345678999999999995588999999999999999987311 13566
Q ss_pred eeeecccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee
Q 015371 224 GVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 302 (408)
Q Consensus 224 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
..+..|...|++++|+|++. +|++++.||.|++||++... .++..+
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~ 317 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSF 317 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEe
Confidence 77789999999999999987 68899999999999998722 345566
Q ss_pred ecccceeeEEEEEeeccccCCCc-EEEEeeCCCeEEEEECCC--------------CceeEEEccCCCCeeeeeEeCCCC
Q 015371 303 KGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLVS--------------GAQVAKLDFHNAPVRDCCWHPIYP 367 (408)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~ 367 (408)
..|.. .+.+++|+|+++ +|++++.||.|++||+.. .+.+..+.+|...|++++|+|+++
T Consensus 318 ~~h~~------~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 318 ESHKD------EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391 (430)
T ss_dssp ECCSS------CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred ecCCC------CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence 66653 334557888885 699999999999999987 367778889999999999999999
Q ss_pred -eEEeecCCCcEEEEeeCC
Q 015371 368 -MLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 368 -~l~s~~~dg~v~iw~~~~ 385 (408)
+|++++.||.|++|++..
T Consensus 392 ~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TEEEEEETTSEEEEEEECH
T ss_pred CEEEEEECCCCEEEeEccc
Confidence 899999999999999975
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-38 Score=277.70 Aligned_cols=283 Identities=13% Similarity=0.130 Sum_probs=207.0
Q ss_pred ceeeEecC-CccEEEeecCceEEEEEEecC---c--eeeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEE
Q 015371 4 GREVNYSG-RGRFSAADSCHVLSRYLPVNG---P--WKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ 76 (408)
Q Consensus 4 ~~~~~~s~-dg~~~~~~~~~~~~~~~~~~~---~--~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~ 76 (408)
..||+|+| ++.++++++.+....+|.... . ..+.+|.+.|++++|+| ++++|++|+.||+|++||++++ ...
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~~ 200 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILR 200 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-cee
Confidence 46899999 567899888887777776432 1 34568999999999998 6899999999999999999875 333
Q ss_pred EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-E
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-E 155 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 155 (408)
.......+...+.+++|+|++++|++|+.||.|++||+..... ..+.. |...|.+++|+|++. +
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~---~~~~~------------h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL---WNLRM------------HKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC---CCSBC------------CSSCEEEEEECTTCSSE
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee---EEEec------------ccceEEeeeecCCCceE
Confidence 3344444555688999999999999999999999999875432 22223 344799999999876 6
Q ss_pred EEEEecCCeEEEEECCCCcceeee---cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC-
Q 015371 156 LVAAGSDNFIYVYDLQANKCSLRI---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE- 231 (408)
Q Consensus 156 l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~- 231 (408)
+++++.|+.|++||+++.+....+ .+|...|++++|+ |++.+|++++.||.|++||++ .+.....+..|..
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~----~~~~~~~~~~~~~~ 340 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPHR 340 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESS----SSSSEEEECCCCCC
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECC----CCccceEEeccccc
Confidence 778999999999999887654433 5799999999999 899999999999999999976 4444444444432
Q ss_pred -----CeEEEEecCCCCeEEEee------------cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccC
Q 015371 232 -----GITFIDSRRDGRYFISNG------------KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294 (408)
Q Consensus 232 -----~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (408)
.+....|+|++..+++++ .++.|++||..+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--------------------------------- 387 (435)
T 4e54_B 341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--------------------------------- 387 (435)
T ss_dssp CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS---------------------------------
T ss_pred ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC---------------------------------
Confidence 123345666666555543 245799999887
Q ss_pred CCcceeeee-cccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 295 HDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 295 ~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
++.+..+. +|...... ..+|+|+|++|++|+ |+.|+|||+++++..
T Consensus 388 -g~~~~~l~~~~~~~v~s-----~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 388 -GKMMCQLYDPESSGISS-----LNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp -CCEEEEECCSSCCCCCC-----EEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred -CcEEEEEeCCCCCcEEE-----EEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 33334332 33321111 115889999999886 789999999988653
No 101
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=259.46 Aligned_cols=279 Identities=16% Similarity=0.185 Sum_probs=224.6
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCc---eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGP---WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
..+++| |++.++++++.+....+|..... ..+..|.+.|.+++|+|++++|++++.||.|++|++...........
T Consensus 21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 99 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT 99 (313)
T ss_dssp EEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE
T ss_pred cEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc
Confidence 467899 89999998888887777776543 45778999999999999999999999999999999877533333334
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAA 159 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 159 (408)
...|...|.+++| ++++|++++.||.|++|| ..+. ...+..+ ..++.++.|.| ++++++++
T Consensus 100 ~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~--~~~~~~~------------~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 100 LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL--VYNLQAH------------NASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE--EEEEECC------------SSCEEEEEEEETTTTEEEEE
T ss_pred hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE--EEecccC------------CCceeEEEEccCCCCEEEEE
Confidence 4567779999999 678999999999999999 2222 2223333 33799999998 89999999
Q ss_pred ecCCeEEEEECCCCcceeeecC-cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 160 GSDNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
+.||.|++|| .++....+.. |...+.+++|+ +++. +++++.||.|++||++ .++.+..+.+|...|.+++|
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMH----TGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECC----chhhhhhhhcCCceEEEEEE
Confidence 9999999999 4555666666 89999999999 6666 8999999999999975 67888889999999999999
Q ss_pred cCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeec
Q 015371 239 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 318 (408)
Q Consensus 239 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
+|++ .|++++.||.|++||+++ .+.+..+..+.. .+..+
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~----------------------------------~~~~~~~~~~~~------~i~~~ 272 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKEN----------------------------------GSLKQVITLPAI------SIWSV 272 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTT----------------------------------CCEEEEEECSSS------CEEEE
T ss_pred ecCC-CEEEEecCCEEEEEECCC----------------------------------CceeEEEeccCc------eEEEE
Confidence 9999 589999999999999987 345566666653 23455
Q ss_pred cccCCCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 015371 319 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 351 (408)
Q Consensus 319 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (408)
+|+|+++ +++++.||.|++||+++++.+....
T Consensus 273 ~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 273 DCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 7888898 6678999999999999887655443
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-39 Score=276.86 Aligned_cols=265 Identities=10% Similarity=-0.005 Sum_probs=204.7
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
.....|.+++|||||+++|+++.|++|+ |......+ .+|...|.+++|+|+| .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l------~gh~~~v~~V~FsPdg-------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI------NCNSKNLFHVKEFPLE-------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC------SSBGGGTEEEEEECCC-------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee------cCCCccEEEEEECCCC-------CcceEEEEeC---
Confidence 4468899999999999999999999999 65444222 4788899999999999 3454444443
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCC-----CceEEEEe
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-----DVNTVCFA 192 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~l~~~ 192 (408)
+......... ...|.+++|+|+|++|++++.||.|++||.+. ++..+. |.. .+.+++|+
T Consensus 75 ~~~~~~~~~~-------------~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafS 138 (588)
T 2j04_A 75 QQNGLLNSQP-------------VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWN 138 (588)
T ss_dssp CSSCSSTTSC-------------SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEEC
T ss_pred CCceEeecCC-------------CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEc
Confidence 3222222111 22699999999999999999999999999644 555566 665 49999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCc-------cceee----ecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGR-------ANGVL----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
|++++|++|+.||+|++||+. .+. .+..+ .+|...|.+++|+|+| +++++.|+.+++||+..
T Consensus 139 -PDG~~LAsgs~DGtVkIWd~~----~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 139 -PIESSIVVGNEDGELQFFSIR----KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp -SSSSCEEEEETTSEEEEEECC----CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred -CCCCEEEEEcCCCEEEEEECC----CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 899999999999999999986 222 24555 6678899999999999 88889999999999987
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeee-cccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEE
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 340 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd 340 (408)
.... .....+. +|.. .+.+++|+ |++||+++ ++.|++||
T Consensus 212 ~~~~-------------------------------~~~~tL~~~h~~------~V~svaFs--g~~LASa~-~~tIkLWd 251 (588)
T 2j04_A 212 SSHQ-------------------------------PVSRMIQNASRR------KITDLKIV--DYKVVLTC-PGYVHKID 251 (588)
T ss_dssp SSSC-------------------------------CCEEEEECCCSS------CCCCEEEE--TTEEEEEC-SSEEEEEE
T ss_pred Cccc-------------------------------cceeeecccccC------cEEEEEEE--CCEEEEEe-CCeEEEEE
Confidence 3210 0123342 4442 23334566 58888887 69999999
Q ss_pred CCCCceeEEEccCCCCeeeeeE--eCCCCeEEeecCCCcEEEEeeC
Q 015371 341 LVSGAQVAKLDFHNAPVRDCCW--HPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
+.+++......+|...|.+++| +|++..|+++++||+ ++|.+.
T Consensus 252 ~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 252 LKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9888774444479999999999 999999999999999 999985
No 103
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-37 Score=265.59 Aligned_cols=284 Identities=15% Similarity=0.228 Sum_probs=216.1
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCc---eeee-cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGP---WKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
.+++|+++. + ++.+.+....+|..... ..+. .|...|.+++|+|++++|++|+.||.|++||+.++..+....
T Consensus 97 ~~~~~s~~~-l-~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 173 (401)
T 4aez_A 97 NLLDWSNLN-V-VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA- 173 (401)
T ss_dssp BCEEECTTS-E-EEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred EEEeecCCC-E-EEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-
Confidence 346777643 3 33334444555554432 2333 388999999999999999999999999999999886665443
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
.|...|.+++| +++.|++++.||.|++||+...... ...+.. |...|.+++|+|++++|++++
T Consensus 174 --~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~------------~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 174 --GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ-IGTLQG------------HSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp --CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE-EEEEEC------------CSSCEEEEEECTTSSEEEEEE
T ss_pred --CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce-eeEEcC------------CCCCeeEEEEcCCCCEEEEEe
Confidence 56668999999 5679999999999999999854321 222223 334799999999999999999
Q ss_pred cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec--CCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 161 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
.|+.|++||+++++....+..|...|.+++|+|....++++++ .|+.|++||++ .+.....+. +...|.+++|
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~ 311 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIW 311 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEE
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEE
Confidence 9999999999999999999999999999999955667888865 89999999975 566666664 6678999999
Q ss_pred cCCCCeEEE--eecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 239 RRDGRYFIS--NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 239 ~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
+|+++++++ |+.||.|++||+++... .....+.+|... +.
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~--------------------------------~~~~~~~~h~~~------v~ 353 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGL--------------------------------TKQVDIPAHDTR------VL 353 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEE--------------------------------EEEEEEECCSSC------CC
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccc--------------------------------eeEEEecCCCCC------EE
Confidence 999999999 55899999999876221 122334455532 34
Q ss_pred eccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 015371 317 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 351 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (408)
.++|+|++++|++++.||.|++||+.+++.+....
T Consensus 354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 45788999999999999999999999988776553
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=274.26 Aligned_cols=248 Identities=14% Similarity=0.157 Sum_probs=196.5
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC--------------ceeeeccc------------CceeEEEEcCCC--CeE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG--------------PWKVDGMN------------SRVYTSQFSNDG--SFF 55 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~--------------~~~l~~h~------------~~v~~~~~s~~~--~~l 55 (408)
..+++|+|+|.++++++.+....+|.... ...+.+|. +.|++++|+|++ .+|
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l 110 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQF 110 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceE
Confidence 36899999999999988887777776553 34678998 889999999998 799
Q ss_pred EEEeCCCcEEEEEcCCCeeEEE-------------------------------------ecccccceeeEEEEEeCCCCc
Q 015371 56 VAASQESNIKVYNVDKNWKIQK-------------------------------------DIETKALRWTITDTSLSPDQR 98 (408)
Q Consensus 56 ~t~~~dg~i~iw~~~~~~~~~~-------------------------------------~~~~~~~~~~v~~~~~~~~~~ 98 (408)
++++.|++|++|++.++..... .....+|...|.+++|+|+++
T Consensus 111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 190 (447)
T 3dw8_B 111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE 190 (447)
T ss_dssp EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS
T ss_pred EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC
Confidence 9999999999999876433210 011346777899999999999
Q ss_pred eEEEeecCcEEEEEECCCCce-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcc-
Q 015371 99 FLVYASICAIVNIVDVGSSAR-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKC- 175 (408)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~- 175 (408)
+|+++ .|+.|++||+..... ........ .....|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 191 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 191 TYLSA-DDLRINLWHLEITDRSFNIVDIKP-------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EEEEE-CSSEEEEEETTEEEEEEEEEECCC-------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEEEe-CCCeEEEEECCCCCceeeeeeccc-------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99998 799999999984322 11110000 0112345589999999998 9999999999999999999886
Q ss_pred ---eeeecCcCC------------CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCC--------
Q 015371 176 ---SLRIPAHKS------------DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG-------- 232 (408)
Q Consensus 176 ---~~~~~~~~~------------~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------- 232 (408)
...+..|.. .|.+++|+ +++.+|++++. +.|++||++. .++.+..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNM---ENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTC---CSSCSCCEESCGGGTTTHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCC---Cccccceeeccccccccccccc
Confidence 677777776 89999999 79999999999 9999999862 26677777777542
Q ss_pred -------eEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 233 -------ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 233 -------i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
+..++|+|++++|++++.||.|++||+.+...
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23499999999999999999999999988543
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=265.07 Aligned_cols=283 Identities=11% Similarity=0.076 Sum_probs=210.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeee
Q 015371 46 SQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (408)
Q Consensus 46 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (408)
..+.+++.+|++|+.||+|++||+.+++.+.... ...|.++.|+|+ +++++.|+.|++|+...... ....
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~--~~~~ 111 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT--ILDS 111 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE--EEET
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceE--Eeec
Confidence 3455688999999999999999999887665543 346888999998 99999999999998864321 0000
Q ss_pred eeeeeeeeecCCCCCccceEEEEEcC--CCCEEEEEecCCeEEEEECCCCcceeeec-CcCCCceEEEEecCCCCEEEEe
Q 015371 126 TIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSG 202 (408)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~~~ 202 (408)
.. ..........|..+|.+++|+| +++++++++.||.|++||+++++...... .|...+++++|+ |++.+|++|
T Consensus 112 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~lasg 188 (343)
T 3lrv_A 112 KT--NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLALY 188 (343)
T ss_dssp TT--CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEEEE
T ss_pred CC--cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEEEE
Confidence 00 0001111123345799999999 99999999999999999999998866653 456689999999 899999999
Q ss_pred cCCCeEEEEeccccccCCccc-eeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccce
Q 015371 203 SDDSLCKVWDRRCFISKGRAN-GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 280 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 280 (408)
+.||.|++||++ .+... ..+.. |...|++++|+|++.+|++++ |+.|++||+++......
T Consensus 189 ~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------------- 250 (343)
T 3lrv_A 189 SPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------------- 250 (343)
T ss_dssp CTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS-------------
T ss_pred cCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee-------------
Confidence 999999999986 44544 66777 999999999999999999999 55999999998432211
Q ss_pred eecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCCCceeEEEccCCCCeee
Q 015371 281 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRD 359 (408)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (408)
+..+..+...... ..++|+|++++|++++. |+.|++|++.+....... .++..
T Consensus 251 ------------------~~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~ 304 (343)
T 3lrv_A 251 ------------------YPTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESA 304 (343)
T ss_dssp ------------------SCCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEE
T ss_pred ------------------ecccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCcee
Confidence 1111111111110 23578899999999998 999999999766543333 56788
Q ss_pred eeEeC---CCCeEEeecCCCcEEEEeeCC
Q 015371 360 CCWHP---IYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 360 ~~~~~---~~~~l~s~~~dg~v~iw~~~~ 385 (408)
++|++ +.+.+++++.||.+.++-...
T Consensus 305 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 305 LCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EecCccccccceeEEEecCCceEEEEecC
Confidence 89998 888999999999999886543
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7e-37 Score=260.56 Aligned_cols=285 Identities=12% Similarity=0.131 Sum_probs=209.9
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceE-EEeecCcEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIV 112 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~w 112 (408)
..+.+|.+.|++++|+|||++||+|+.++ ++||++++........ . ..+..+++.++++.+ ++++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE-M----RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE-C----SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee-c----CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 35688999999999999999999998775 8899998765443321 1 147778888888877 467778999999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCcCCCceEEEE
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~ 191 (408)
|..+++..... .. ..+|.++.++++. ++++ .++.|++||+.++ +.+..+.. +...+++
T Consensus 87 d~~~~~~~~~~--~~-------------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 87 DDVKKQDVSRI--KV-------------DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp ETTTTEEEEEE--EC-------------SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred ECCCCcEEEEE--EC-------------CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 99888654322 21 1159999998764 4444 4789999999988 66666654 4555667
Q ss_pred ecCCCCEEEE--ecCCCeEEEEecccccc----CC-------cc-ceeeecccCCeEEEEecCCCCeEEEeecCCe-EEE
Q 015371 192 ADETGHLIFS--GSDDSLCKVWDRRCFIS----KG-------RA-NGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKL 256 (408)
Q Consensus 192 ~~~~~~~l~~--~~~dg~i~iwd~~~~~~----~~-------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i 256 (408)
+ + .++++ |+.||.|++||++.... .. .+ ...+.+|...|.+++|+|++++|++++.|++ |++
T Consensus 146 s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 146 S-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp E-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred E-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 7 4 55555 68999999999862110 00 12 6788999999999999999999999999998 999
Q ss_pred EeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee-c-ccceeeEEEEEeeccccCCCcEEEEeeCCC
Q 015371 257 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-G-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 334 (408)
Q Consensus 257 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 334 (408)
||+++ ++.+..+. + |.. .+.+++|+|++++|++++.|+
T Consensus 223 wd~~~----------------------------------~~~~~~~~~g~h~~------~v~~~~~s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 223 FKTED----------------------------------GVLVREFRRGLDRA------DVVDMKWSTDGSKLAVVSDKW 262 (355)
T ss_dssp EETTT----------------------------------CCEEEEEECTTCCS------CEEEEEECTTSCEEEEEETTC
T ss_pred EECCC----------------------------------CcEEEEEEcCCCCC------cEEEEEECCCCCEEEEEECCC
Confidence 99987 45566666 3 553 344558999999999999999
Q ss_pred eEEEEECCCCce--eEEEc---------------------cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 335 SVYIYDLVSGAQ--VAKLD---------------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 335 ~i~vwd~~~~~~--~~~~~---------------------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.|++||+..+.. ...+. .+......++|++++++|++++.||.+++|++...++
T Consensus 263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999999976531 11111 1122346789999999999999999999999976554
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=265.13 Aligned_cols=316 Identities=18% Similarity=0.244 Sum_probs=213.0
Q ss_pred ceeeEecC-CccEEEeecCceEEEEEEecCc---eee-------------ecccCceeEEEEcC-CCCeEEEEeCCCcEE
Q 015371 4 GREVNYSG-RGRFSAADSCHVLSRYLPVNGP---WKV-------------DGMNSRVYTSQFSN-DGSFFVAASQESNIK 65 (408)
Q Consensus 4 ~~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~---~~l-------------~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~ 65 (408)
..+++|+| +|.++++++.+....+|..... ..+ .+|...|.+++|+| ++.+|++++.||.|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 46899999 9999999887777777765432 222 25999999999999 788999999999999
Q ss_pred EEEcCCCeeEEEecccccceeeEEEEEeCCC---CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCcc
Q 015371 66 VYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEF 142 (408)
Q Consensus 66 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (408)
+||+.++....... +...+.++.|+|. +.++++++.++.|++||+.+++.. ..+.. |..
T Consensus 126 iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~------------~~~ 187 (408)
T 4a11_B 126 VWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--HILQG------------HRQ 187 (408)
T ss_dssp EEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--EEECC------------CCS
T ss_pred EeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--eeecC------------CCC
Confidence 99999886665443 3346888999884 459999999999999999877542 22222 334
Q ss_pred ceEEEEEcCCCC-EEEEEecCCeEEEEECCCCc-ceeee---------------cCcCCCceEEEEecCCCCEEEEecCC
Q 015371 143 GIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANK-CSLRI---------------PAHKSDVNTVCFADETGHLIFSGSDD 205 (408)
Q Consensus 143 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~l~~~~~~~~~l~~~~~d 205 (408)
+|.+++|+|+++ .+++++.||.|++||++++. ....+ ..|...|.+++|+ +++++|++++.|
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 266 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLTVGTD 266 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEEecCC
Confidence 799999999998 58899999999999998765 22222 5688999999999 899999999999
Q ss_pred CeEEEEeccccccCCccceeeecc-----cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccce
Q 015371 206 SLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 280 (408)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 280 (408)
|.|++||++. ++.......+ ...+........+..+++++.++.|++||+.+
T Consensus 267 g~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------------- 323 (408)
T 4a11_B 267 NRMRLWNSSN----GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS------------------- 323 (408)
T ss_dssp SCEEEEETTT----CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-------------------
T ss_pred CeEEEEECCC----CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC-------------------
Confidence 9999999863 3322222211 12222223334456677788899999999987
Q ss_pred eecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeee
Q 015371 281 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 360 (408)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (408)
+..+..+.+|... +.+++|+|++++|++|+.||.|++||+.+++.+.....+... .
T Consensus 324 ---------------~~~~~~~~~~~~~------v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~ 379 (408)
T 4a11_B 324 ---------------GEQITMLKGHYKT------VDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---S 379 (408)
T ss_dssp ---------------CCEEEEECCCSSC------EEEEEEETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred ---------------CcceeeeccCCCe------EEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---c
Confidence 4566777777643 334578889999999999999999999999887665533322 2
Q ss_pred eEeCC-CCeEEeecCCCcEEEEeeCC
Q 015371 361 CWHPI-YPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 361 ~~~~~-~~~l~s~~~dg~v~iw~~~~ 385 (408)
.+.+. ...+.+++.|+.+++|+.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------
T ss_pred ccccccceeecccCccCceeecCCcc
Confidence 33432 33566778899999998764
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-37 Score=269.33 Aligned_cols=265 Identities=11% Similarity=0.086 Sum_probs=182.2
Q ss_pred EEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC--------CCCEEEEEecC
Q 015371 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST--------DGQELVAAGSD 162 (408)
Q Consensus 91 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~l~~~~~d 162 (408)
..+.+++.+|++++.|++|++||..+++....... ....+|...|.+++|+| |+++|++++.|
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~---------~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL---------GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE---------CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeee---------cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 34455677899999999999999988765332221 12345677899999998 78999999999
Q ss_pred CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcc--------------------
Q 015371 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA-------------------- 222 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------- 222 (408)
++|++||+.++.++..+..|..++.+++|+|.+..+|++++.|++|++||++........
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999999888888888899999999999555578999999999999998632111100
Q ss_pred -ceeeecccCCeEEEEec-CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee
Q 015371 223 -NGVLMGHLEGITFIDSR-RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300 (408)
Q Consensus 223 -~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
.....+|...+.++.|+ |+++.|++++.|+.+++||+............. ......... ....
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~----~~~~~~~~~-----------~~~~ 310 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST----MKLGPKNLL-----------PNVQ 310 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCS-----------CSEE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec----CccccEEEc-----------cccc
Confidence 11234677888999986 799999999999999999998744322211000 000000000 0011
Q ss_pred eeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEE
Q 015371 301 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
....+. ......+.+ ..++.++++|+.||.|++||+.+++.+..+..|..+|++++|+|||++||+++.|| +.+
T Consensus 311 ~~~~~~---~~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 311 GISLFP---SLLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp EECSSC---CSSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred cccccC---cceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 111111 111112211 23566788899999999999999999888888999999999999999999998766 667
Q ss_pred EeeCC
Q 015371 381 WEIPG 385 (408)
Q Consensus 381 w~~~~ 385 (408)
|++..
T Consensus 385 vrL~g 389 (393)
T 4gq1_A 385 TRLMG 389 (393)
T ss_dssp EEEGG
T ss_pred EEEeC
Confidence 76644
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-37 Score=285.50 Aligned_cols=256 Identities=19% Similarity=0.245 Sum_probs=211.3
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC--CCEEEE
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVA 158 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~ 158 (408)
..+|.+.|++++|+|++++|++++.||.|++||+.++.......+..| ..+|.+++|+|+ +++|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h------------~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH------------EGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC------------SSCEEEEEECCTTSCSEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC------------cCceEEEEecCCCCCCEEEE
Confidence 457788999999999999999999999999999986554444444444 448999999987 999999
Q ss_pred EecCCeEEEEECCCCc--ceeeecCcCCCceEEEEecCC--CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeE
Q 015371 159 AGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
|+.||.|++||+.+++ ....+..|...|++++|+ |+ ++++++|+.||.|++||++. ........+.+|...|.
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~--~~~~~~~~~~~~~~~v~ 149 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDAHAIGVN 149 (753)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCS--SSCCCCEEEECCSSCEE
T ss_pred EeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeec--CCCcceeEeecCCCceE
Confidence 9999999999999886 667778899999999999 66 89999999999999999872 22345566788999999
Q ss_pred EEEecC-------------CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee
Q 015371 235 FIDSRR-------------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 301 (408)
Q Consensus 235 ~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
++.|+| ++.+|++++.||.|++||++..... ......
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------~~~~~~ 199 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLEST 199 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE------------------------------EEEEEE
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc------------------------------ceeeee
Confidence 999999 5899999999999999999873211 123445
Q ss_pred eecccceeeEEEEEeeccccCC---CcEEEEeeCCCeEEEEECCCCc-----eeEEEccCCCCeeeeeEeCCCCeEEeec
Q 015371 302 YKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISSS 373 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (408)
+.+|.. .+.+++|+|+ +++|++|+.||.|++||+.+++ .......|...|++++|+|++++|++++
T Consensus 200 ~~~h~~------~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 200 LEGHSD------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp ECCCSS------CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred ecCCCC------cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 566653 3445578899 8999999999999999998864 3333456889999999999999999999
Q ss_pred CCCcEEEEeeCCCC
Q 015371 374 WDCNIVRWEIPGIG 387 (408)
Q Consensus 374 ~dg~v~iw~~~~~~ 387 (408)
.||.|++|++....
T Consensus 274 ~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 274 GDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCCC
Confidence 99999999998643
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=244.03 Aligned_cols=276 Identities=13% Similarity=0.235 Sum_probs=214.9
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCc---e--eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGP---W--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---~--~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
.+|+||+++ +++++. +...++|..... . .+.+|...|++++|+|++++||+|+.||+|++|++++++.+...
T Consensus 29 ~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~- 105 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM- 105 (318)
T ss_dssp BCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred eEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-
Confidence 679999998 555543 445666765432 2 34578899999999999999999999999999999998776654
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
..|...+.++. +++..+++++.++.+++|+....... ......+ ...+..+.+.+++++++++
T Consensus 106 --~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 106 --TSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHH-VATLSGH------------SQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp --ECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCE-EEEEECC------------SSCEEEEEECTTSSEEEEE
T ss_pred --cCccceEEEee--cCCCEEEEEecCCceEeeecCCCcee-EEEEcCc------------cCceEEEEEcCCCCEEEEE
Confidence 34544666544 46789999999999999998776432 2222233 3379999999999999999
Q ss_pred ecCCeEEEEECCCCcce----eeecCcCCCceEEEEecCCCCEE--EEecCCCeEEEEeccccccCCccceeeecccCCe
Q 015371 160 GSDNFIYVYDLQANKCS----LRIPAHKSDVNTVCFADETGHLI--FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 233 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~l~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 233 (408)
+.|+.|++||+++++.. .....+...|.+++++|.+...+ ++++.++.|++||.+ .... .....+...+
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~-~~~~~~~~~v 243 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGAC-LSAVDAHSQV 243 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----TCCE-EEEEECSSCE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----cccc-cccccceeee
Confidence 99999999999887643 33456788999999996566654 467789999999964 3333 3344577889
Q ss_pred EEEEecCCCCeEEEee--cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeE
Q 015371 234 TFIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 311 (408)
Q Consensus 234 ~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
..+.|+|+++.+++++ .|+.|++||+++ ++.+..+.+|...
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~----------------------------------~~~~~~l~gH~~~--- 286 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTSR--- 286 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCSSC---
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCC----------------------------------CcEEEEEcCCCCC---
Confidence 9999999999887654 799999999987 5677888888743
Q ss_pred EEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 312 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 312 ~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
+.+++|+|++++|++|+.||+|++||+.+..
T Consensus 287 ---V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 287 ---VLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ---EEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ---EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 4455789999999999999999999997654
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.3e-36 Score=260.36 Aligned_cols=288 Identities=14% Similarity=0.140 Sum_probs=216.9
Q ss_pred ceeeEecCCccEEE-eecCceEEEEEEecC-------ceeeecccCceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCee
Q 015371 4 GREVNYSGRGRFSA-ADSCHVLSRYLPVNG-------PWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 4 ~~~~~~s~dg~~~~-~~~~~~~~~~~~~~~-------~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
.+.++++|+...+. +++.+....+++... ...+.+|.+.|++++|+| ++++||+|+.||.|++|++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34678888876544 344455555565422 345789999999999999 999999999999999999988632
Q ss_pred E----EEecccccceeeEEEEEeCCCC-ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE
Q 015371 75 I----QKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 75 ~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (408)
. .......+|...|.+++|+|++ .+|++++.||.|++||+.+++......... |...|.+++|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~ 184 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV------------HPDTIYSVDW 184 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT------------CCSCEEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC------------CCCceEEEEE
Confidence 1 1122344577799999999998 699999999999999999876532221022 3447999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCCC-ceEEEEecCCCCEEEEe---cCCCeEEEEeccccccCCccce
Q 015371 150 STDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD-VNTVCFADETGHLIFSG---SDDSLCKVWDRRCFISKGRANG 224 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~ 224 (408)
+|++++|++++.||.|++||+++++.+..+ ..|.+. +.++.|+ +++.+|++| +.|+.|++||++.. .....
T Consensus 185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~---~~~~~ 260 (402)
T 2aq5_A 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHL---EEPLS 260 (402)
T ss_dssp CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBC---SSCSE
T ss_pred CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccc---cCCce
Confidence 999999999999999999999999988888 778776 8999999 889999999 89999999998621 22222
Q ss_pred e-eecccCCeEEEEecCCCCeEEE-eecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee
Q 015371 225 V-LMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 302 (408)
Q Consensus 225 ~-~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
. ...|...+.++.|+|++++|++ ++.|+.|++||+.+... .+..+
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---------------------------------~~~~l 307 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---------------------------------FLHYL 307 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---------------------------------CEEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---------------------------------ceEee
Confidence 2 2357788999999999999865 55799999999987321 12333
Q ss_pred ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 303 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
..+... ..+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 308 ~~~~~~----~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 308 SMFSSK----ESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEECCS----SCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cccccC----CcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 322211 22344578888988765 466899999988654
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.7e-35 Score=259.70 Aligned_cols=293 Identities=19% Similarity=0.258 Sum_probs=218.5
Q ss_pred eEecCCccEEEeecCceEEEEEEecC---ceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccccc
Q 015371 7 VNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 83 (408)
.++++||.++++++.+....++.... ...+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.+... ..
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~ 211 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL---IH 211 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE---CC
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE---cC
Confidence 35566899999888877777776544 3567899999999999 7889999999999999999998766554 35
Q ss_pred ceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeee-eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC
Q 015371 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL-ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 162 (408)
Q Consensus 84 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (408)
|...|.+++|+ +..+++++.||.|++||+.++..... .... .|...|.+++| +++++++|+.|
T Consensus 212 h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 212 HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV------------GHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp CCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC------------CCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec------------CCCCcEEEEEe--CCCEEEEEeCC
Confidence 66689999997 45899999999999999987654321 1222 34447999999 78899999999
Q ss_pred CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCC
Q 015371 163 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 242 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 242 (408)
|.|++||+++++.+..+.+|...|.++++. ++++++|+.||.|++||++ .+..+..+.+|...|.++++ ++
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEC--CS
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECC----CCCEEEEEeCCcCcEEEEEe--cC
Confidence 999999999999999999999999999986 6799999999999999975 67888899999999999999 68
Q ss_pred CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 243 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 243 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
++|++++.||.|++||++........ .....+..+.+|..... +++|
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~~~~~~h~~~v~------~l~~-- 393 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAP-------------------------AGTLCLRTLVEHSGRVF------RLQF-- 393 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSC-------------------------TTTTEEEEECCCSSCCC------CEEE--
T ss_pred CEEEEEeCCCcEEEEECCCCCCcccc-------------------------ccchheeeccCCCCCeE------EEEe--
Confidence 89999999999999998763311100 00124556666664332 2234
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEe
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 363 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (408)
++.+|++|+.||.|++||+.+........ ...+...+.|.
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp CSSCEEECCSSSEEEEEC-----------------------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 68899999999999999998776554433 23345555554
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-35 Score=251.26 Aligned_cols=272 Identities=10% Similarity=0.052 Sum_probs=215.9
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC------ceeeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEc-CCCeeE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG------PWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNV-DKNWKI 75 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~------~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~-~~~~~~ 75 (408)
..+++|+|+|.++++++.+....+|.... ...+.+|...|.+++|+|+++ +|++|+.||.|++|++ .++..
T Consensus 14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~- 92 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF- 92 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-
Confidence 46899999999998887766666665432 355679999999999999999 9999999999999999 77643
Q ss_pred EEeccccc--ceeeEEEEEeCCCCceEEEeecCcEEEEEECCC---------CceeeeeeeeeeeeeeeecCCCCCccce
Q 015371 76 QKDIETKA--LRWTITDTSLSPDQRFLVYASICAIVNIVDVGS---------SARESLANVTIHKGLDFSADGDEDEFGI 144 (408)
Q Consensus 76 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 144 (408)
. .... |...|.+++|+| ++.|++++.|+.|++||+.+ .+. ...+. +...|
T Consensus 93 ~---~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~-------------~~~~v 153 (342)
T 1yfq_A 93 Q---ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTK-------------VKNKI 153 (342)
T ss_dssp E---ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSS-------------SCCCE
T ss_pred E---eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe--eeEEe-------------eCCce
Confidence 2 2334 777899999999 99999999999999999875 221 11111 33479
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC-Ccc--eeeecCcCCCceEEEEecC-CCCEEEEecCCCeEEEEecccc--cc
Q 015371 145 FSVKFSTDGQELVAAGSDNFIYVYDLQA-NKC--SLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCF--IS 218 (408)
Q Consensus 145 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~iwd~~~~--~~ 218 (408)
.+++|+|++ +++++.++.|++||+++ +.. ......|...+.+++|+ + +++++++++.||.|++|+++.. ..
T Consensus 154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred EEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 999999887 99999999999999988 543 33445688899999999 7 8999999999999999998632 11
Q ss_pred CCccceeeecccC---------CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccce
Q 015371 219 KGRANGVLMGHLE---------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 289 (408)
Q Consensus 219 ~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
.......+..|.. .|.+++|+|++++|++++.||.|++||+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------------------------- 282 (342)
T 1yfq_A 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---------------------------- 282 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT----------------------------
T ss_pred ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc----------------------------
Confidence 1366777777765 999999999999999999999999999987
Q ss_pred eeccCCCcceeeeecc-cceeeEEEEEeeccccCCCcEEEEeeCCCe-EEEEE
Q 015371 290 RLKHPHDQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIYTGSSDNS-VYIYD 340 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~vwd 340 (408)
++.+..+.+| ..... +++ |++++|++++.||. .+.+.
T Consensus 283 ------~~~~~~~~~~h~~~v~------~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 283 ------RKKIKNFAKFNEDSVV------KIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ------TEEEEECCCCSSSEEE------EEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ------HhHhhhhhcccCCCce------Eec--CCCCeEEEEecCCccccccc
Confidence 3455666666 53332 223 68999999999998 55544
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5e-35 Score=249.65 Aligned_cols=301 Identities=14% Similarity=0.142 Sum_probs=206.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC-------ceeeecccCceeEEEEcC--CCCeEEEEeCCCcEEEEEcCCCee
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG-------PWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWK 74 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~-------~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~ 74 (408)
..+++|+|+|+++++++.+...++|.... ...+.+|...|++++|+| ++++|++|+.||.|++||+.++..
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 46899999999999988887777776543 235679999999999999 699999999999999999987621
Q ss_pred ------EEEecccccceeeEEEEEeCCC--CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEE
Q 015371 75 ------IQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFS 146 (408)
Q Consensus 75 ------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (408)
.........|...|.+++|+|+ +++|++++.||.|++||+.+.+.......... ..........+...+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-MKVLSIPPANHLQSDFC 172 (351)
T ss_dssp TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-EESCSCCCSSCSCCCEE
T ss_pred cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-ccccccccCCcccceeE
Confidence 1222334456678999999999 99999999999999999988765332222111 11112222356668999
Q ss_pred EEEcCC---CCEEEEEecCCeEEEEECCCCcc--eeeecCcCCCceEEEEecCCC----CEEEEecCCCeEEEEeccccc
Q 015371 147 VKFSTD---GQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDVNTVCFADETG----HLIFSGSDDSLCKVWDRRCFI 217 (408)
Q Consensus 147 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~----~~l~~~~~dg~i~iwd~~~~~ 217 (408)
++|+|+ +..+++++.++.+.+|+...++. +..+.+|...|++++|+ |++ ++|++++.||.|++||++.
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~-- 249 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITE-- 249 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEE--
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCC--
Confidence 999997 89999999999998888877765 66778899999999999 666 8999999999999999862
Q ss_pred cCCccceeeecccCCeEEEEecCCCCeEEEeec----CCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 218 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 218 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
.........+..........+....+..+.. ...+.+|+...
T Consensus 250 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 295 (351)
T 3f3f_A 250 --KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-------------------------------- 295 (351)
T ss_dssp --CC---------------------------------------CCSEE--------------------------------
T ss_pred --CcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc--------------------------------
Confidence 2222223333333334444444444433332 22333333322
Q ss_pred CCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 294 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
...+..+.+|... +.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 296 --~~~~~~~~~h~~~------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 296 --VELLSEHDDHNGE------VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --EEEEEEECTTSSC------EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred --ccEEEEEeccccc------EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 3455666777643 445578899999999999999999999987655444
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.8e-34 Score=250.31 Aligned_cols=283 Identities=11% Similarity=0.105 Sum_probs=222.4
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec--ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
...+.+++|+|++.++++++.++.|++||+.+++...... ....|...|.+++|+|+++++++++.|+.|++||+.++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3457799999988888888889999999999886654322 23466778999999999999999999999999999877
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 196 (408)
+.... +..+ ...+.+++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.+++|+ +++
T Consensus 202 ~~~~~--~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~-~~g 265 (433)
T 3bws_A 202 AYKAT--VDLT------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS-KDG 265 (433)
T ss_dssp CEEEE--EECS------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC-TTS
T ss_pred eEEEE--EcCC------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc-CCC
Confidence 65322 2222 22699999999999886555 7899999999999888777654 458999999 888
Q ss_pred CEEEEec--------CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeE-EEeecCCeEEEEeCCCCcCccc
Q 015371 197 HLIFSGS--------DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 197 ~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
+++++++ .|+.|++||++ .++....+ .|...+.+++|+|+++.+ ++++.|+.|++||+++.
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----- 335 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK----- 335 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-----
T ss_pred CEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-----
Confidence 8888887 58899999975 44444433 566788999999999754 66688999999999862
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC---------------
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--------------- 332 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--------------- 332 (408)
+.+..+.... .+..++|+|+++++++++.
T Consensus 336 -----------------------------~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 336 -----------------------------KVQKSIPVFD-------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp -----------------------------EEEEEEECSS-------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred -----------------------------cEEEEecCCC-------CCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 2233332211 1234578889998888876
Q ss_pred CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecC-CCcEEEEeeCC
Q 015371 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW-DCNIVRWEIPG 385 (408)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 385 (408)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++++
T Consensus 380 dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999888875 457999999999999887764 99999999874
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.3e-34 Score=234.67 Aligned_cols=281 Identities=12% Similarity=0.123 Sum_probs=188.7
Q ss_pred ceeEEEEcCCCC---eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC----cEEEEEEC
Q 015371 42 RVYTSQFSNDGS---FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDV 114 (408)
Q Consensus 42 ~v~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~ 114 (408)
.+.++-|-..|- .+++++. ..|++|+..++..-........|+.+|..+.+.||...|++..-. +.|+..-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 366676755443 5667765 589999999984434444455666689999999976555443211 11221111
Q ss_pred CCC--ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe--cCCeEEEEEC-CCCcceeeecCcCCCceEE
Q 015371 115 GSS--ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDL-QANKCSLRIPAHKSDVNTV 189 (408)
Q Consensus 115 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~v~~l 189 (408)
... ..........+ ...+..+ ++++++.+++ .|+.|++|++ .+++.+..+..|...++.+
T Consensus 120 spd~~~~~~~l~s~g~------------~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 120 SSDDESEKQVLLKSGN------------IKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL 184 (356)
T ss_dssp ------CCEEEEEEEE------------EEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred CCCccccccEEEeCCC------------eEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence 111 00000000111 1134443 4666555533 4999999999 5588888888999999999
Q ss_pred EEec--CCCCEEEEecCCCeEEEEeccccccCCccceeeeccc---CCeEEEEecCCCCeE------------EEeecCC
Q 015371 190 CFAD--ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL---EGITFIDSRRDGRYF------------ISNGKDQ 252 (408)
Q Consensus 190 ~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~d~ 252 (408)
+|++ .++.+|++++.|++|++||++ +++.+..+.+|. ..+.+++|+|+|.++ ++|+.|+
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 9994 277999999999999999975 788888887654 367788999999876 5677899
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeee-----ecccceeeEEEEEeeccccCCCcEE
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-----KGHSVLRTLIRCYFSPEYSTAQKYI 327 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l 327 (408)
+|++||..+.. .+..+ .+|... .. +..+ ++.++
T Consensus 261 tIklWd~~tgk----------------------------------~l~v~~~~~p~Gh~~~--~l----sg~~--sg~~l 298 (356)
T 2w18_A 261 QLIVINPKTTL----------------------------------SVGVMLYCLPPGQAGR--FL----EGDV--KDHCA 298 (356)
T ss_dssp EEEEEETTTTE----------------------------------EEEEEEECCCTTCCCC--EE----EEEE--ETTEE
T ss_pred EEEEEECCCCE----------------------------------EEEEEEeeccCCCcce--eE----cccc--CCCEE
Confidence 99999988732 22211 122211 11 1122 26789
Q ss_pred EEeeCCCeEEEEECCCCceeEEEccCCCCee-eeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 328 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
++|+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+.
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 9999999999999999999999999987665 58999999999999999999999963
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.6e-35 Score=255.70 Aligned_cols=275 Identities=16% Similarity=0.238 Sum_probs=207.5
Q ss_pred eeeecccCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCC-------eeEEEecccccceeeEEEEEeCCCCc-eEEEee
Q 015371 34 WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKN-------WKIQKDIETKALRWTITDTSLSPDQR-FLVYAS 104 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 104 (408)
....+|.+.|++++|+|+ +.+||+++.||.|++|++... ...........|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345689999999999997 789999999999999999762 11122233446777899999999988 999999
Q ss_pred cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCC---cceeeec
Q 015371 105 ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN---KCSLRIP 180 (408)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~ 180 (408)
.||.|++|++......... ... ......|...|.+++|+| ++..|++++.||.|++||++++ +....+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~-~~~------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRV-IDA------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp TTSCEEEEETTSCCBGGGE-EEC------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred CCCeEEEEeCCCCCCCCce-ecc------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 9999999999874321100 000 000123455799999999 6788999999999999999987 5667778
Q ss_pred CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCC-eEEEeecCCeEEEEeC
Q 015371 181 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDI 259 (408)
Q Consensus 181 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~ 259 (408)
.|...|++++|+|....++++|+.||.|++||++. ....+..+..|...|.+++|+|+++ +|++++.|+.|++||+
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 89999999999944445899999999999999872 3567788889999999999999985 6899999999999999
Q ss_pred CCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCc-EEEEeeCCCeEEE
Q 015371 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYI 338 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~v 338 (408)
+.......... ........+..+.+|.. .+..++|+|++. +|++++.||.|++
T Consensus 352 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~------~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 352 SKIGEEQSTED--------------------AEDGPPELLFIHGGHTA------KISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp GGTTCCCCHHH--------------------HHHCCTTEEEECCCCSS------CEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred CCCccccCccc--------------------cccCCcceEEEcCCCCC------CceEEEECCCCCCEEEEEECCCCEEE
Confidence 87332111000 00001133445555553 234447888898 8999999999999
Q ss_pred EECCCC
Q 015371 339 YDLVSG 344 (408)
Q Consensus 339 wd~~~~ 344 (408)
|++...
T Consensus 406 w~~~~~ 411 (430)
T 2xyi_A 406 WQMAEN 411 (430)
T ss_dssp EEECHH
T ss_pred eEcccc
Confidence 998643
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=244.81 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=168.9
Q ss_pred cccCceeEEEEcCCCCeE-EEEeCCCcEEEEEcC--CCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEEC
Q 015371 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVD--KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 114 (408)
+|.+.|++++|+|++++| |+++.||.|++|++. ++..+.... ...+...|.+++|+|++++|++++.+|.+++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 455579999999999996 899999999999998 665554432 2344568999999999999999999999999999
Q ss_pred CCCceee--eeeeeeeeeeeeecCCCCCccceEEEEEcCC---CCEEEEEecCCeEEEEECCCCcceee-ecCcCCCceE
Q 015371 115 GSSARES--LANVTIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNT 188 (408)
Q Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~ 188 (408)
.+..... ...+.. |...|.+++|+|+ +++|++++.|+.|++||+.+++.+.. +.+|...|.+
T Consensus 179 ~~~~~~~~~~~~~~~------------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 179 NSIPEEKFTQEPILG------------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp TSCCCSSCCCCCSEE------------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred CCcccccccceeeec------------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence 8765431 112223 3347999999999 99999999999999999999988877 5689999999
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-------------------------ccCCeEEEEecCCCC
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------------------------HLEGITFIDSRRDGR 243 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~ 243 (408)
++|+ ++.+|++++.|+.|++||++ .++.+..+.. ....|..+.|+|+++
T Consensus 247 ~~~s--d~~~l~s~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 247 ICCG--KDYLLLSAGGDDKIFAWDWK----TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp EEEC--STTEEEEEESSSEEEEEETT----TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred EEEC--CCCEEEEEeCCCeEEEEECC----CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 9998 89999999999999999976 4555555542 235789999999999
Q ss_pred eEEEee-cCCeEEEEeC
Q 015371 244 YFISNG-KDQTTKLWDI 259 (408)
Q Consensus 244 ~l~~~~-~d~~i~iwd~ 259 (408)
+|++++ .|+.|++|++
T Consensus 321 ~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEe
Confidence 999998 8999999999
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.3e-32 Score=238.46 Aligned_cols=267 Identities=14% Similarity=0.095 Sum_probs=210.0
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceE-EEeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
.++++++.|+.|++||+.+++.+..... + ..+.+++|+|++++| ++++.++.|++||+.+++..... ..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~---~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~--~~~~-- 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV---G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--PAGS-- 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC---S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE--ECSS--
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec---C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE--ECCC--
Confidence 4678889999999999998866654332 2 258999999999987 56668999999999887653322 2211
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE-EEecCCCeEE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCK 209 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~ 209 (408)
.+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++++.+ ++++.++.|+
T Consensus 75 -----------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 75 -----------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKTVS 141 (391)
T ss_dssp -----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTEEE
T ss_pred -----------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC-CCCCEEEEEeCCCCEEE
Confidence 599999999999886555 569999999999988877765 4568999999 777766 7888899999
Q ss_pred EEeccccccCCccceeeecccCCeEEEEecCCCCeE-EEeecCCeEEEEeCCCCcCccccccccccccccceeecccccc
Q 015371 210 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 288 (408)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (408)
+||++ .++....+..+ ..+..++|+|+++++ ++++.++.|++||+++.
T Consensus 142 ~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-------------------------- 190 (391)
T 1l0q_A 142 VINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-------------------------- 190 (391)
T ss_dssp EEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------------------
T ss_pred EEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC--------------------------
Confidence 99975 55666666654 567999999999987 57778999999999872
Q ss_pred eeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee---CCCeEEEEECCCCceeEEEccCCCCeeeeeEeCC
Q 015371 289 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 365 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (408)
+....+..+. ....++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|+
T Consensus 191 --------~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~d 254 (391)
T 1l0q_A 191 --------SVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPD 254 (391)
T ss_dssp --------EEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred --------eEEEEEecCC-------CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccC
Confidence 2233333221 223457888999999888 68999999999999988888765 4789999999
Q ss_pred CCeE-EeecCCCcEEEEeeCCCC
Q 015371 366 YPML-ISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 366 ~~~l-~s~~~dg~v~iw~~~~~~ 387 (408)
+++| ++++.|+.|++||+.+++
T Consensus 255 g~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 255 GKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEcCCCCEEEEEECCCCc
Confidence 9977 677899999999998754
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=242.91 Aligned_cols=275 Identities=16% Similarity=0.106 Sum_probs=212.8
Q ss_pred ceeeEecCC---ccEEEeecCceEEEEEEecC---c--eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE
Q 015371 4 GREVNYSGR---GRFSAADSCHVLSRYLPVNG---P--WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI 75 (408)
Q Consensus 4 ~~~~~~s~d---g~~~~~~~~~~~~~~~~~~~---~--~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~ 75 (408)
..+++|+|+ |.++++++.+....+|.... . ..+.+|.+.|++++|+|++++|++++.||.|++||+.++...
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI 121 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce
Confidence 468999999 69999988877777777653 2 467799999999999999999999999999999999988655
Q ss_pred EEecccccceeeEEEEEe--CCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC
Q 015371 76 QKDIETKALRWTITDTSL--SPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG 153 (408)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 153 (408)
. ...|...|.+++| +|++++|++++.||.|++||+.+++.... +..+. .+.++.+.+
T Consensus 122 ~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~-------------~~~~~~~~~-- 180 (368)
T 3mmy_A 122 Q----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV--LQLPE-------------RCYCADVIY-- 180 (368)
T ss_dssp E----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE--EECSS-------------CEEEEEEET--
T ss_pred e----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE--EecCC-------------CceEEEecC--
Confidence 4 2346668999999 99999999999999999999988765322 22221 366666654
Q ss_pred CEEEEEecCCeEEEEECCCCcceeee--cCcCCCceEEEEecCCCC----EEEEecCCCeEEEEeccccccCC-ccceee
Q 015371 154 QELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGH----LIFSGSDDSLCKVWDRRCFISKG-RANGVL 226 (408)
Q Consensus 154 ~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~ 226 (408)
..+++++.++.+.+|++......... ..+...+.++++. ++.. .+++++.||.|++||++.. .. .....+
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~~~ 257 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYINPP--NPAKDNFTF 257 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEESSCS--CHHHHSEEE
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEecCCC--Cccccceee
Confidence 47888889999999999876543322 2344566677666 3333 3999999999999998621 11 556667
Q ss_pred ecccC------------CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccC
Q 015371 227 MGHLE------------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 294 (408)
Q Consensus 227 ~~~~~------------~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (408)
.+|.. .|.+++|+|++++|++++.||.|++||+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--------------------------------- 304 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA--------------------------------- 304 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT---------------------------------
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC---------------------------------
Confidence 77766 799999999999999999999999999987
Q ss_pred CCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 295 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
+..+..+..|.. .+..++|+|++++|++++.|+..+.|++.
T Consensus 305 -~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 305 -RTKLKTSEQLDQ------PISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -TEEEEECCCCSS------CEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred -CcEEEEecCCCC------CceEEEECCCCCeEEEEeccccccccccc
Confidence 455566666653 34455789999999999998865555443
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.9e-32 Score=232.82 Aligned_cols=306 Identities=14% Similarity=0.115 Sum_probs=225.4
Q ss_pred EEEeecCceEEEEEEecCc---eeeecccCceeEEEEcCCCCeE-EEEeCCCcEEEEEcCCCeeEEEecccccceeeEEE
Q 015371 15 FSAADSCHVLSRYLPVNGP---WKVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~ 90 (408)
++++++.+.....+..... ..+.+| ..+.+++|+|++++| ++++.|+.|++||+.+++........ . .+.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~---~v~~ 78 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-S---SPQG 78 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-S---SEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-C---Cccc
Confidence 4455555555566665432 234455 458999999999977 66778999999999988666543322 2 7999
Q ss_pred EEeCCCCceEEEee-cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE-EEEecCCeEEEE
Q 015371 91 TSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVY 168 (408)
Q Consensus 91 ~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~ 168 (408)
++|+|++++|++++ .++.|++||+.+++..... ..+. .+.+++|+|+++.+ ++++.++.|++|
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~-------------~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGK-------------SPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSS-------------SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE--eCCC-------------CcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 99999999886554 6799999999987653322 2221 48999999999977 677779999999
Q ss_pred ECCCCcceeeecCcCCCceEEEEecCCCCEE-EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEE
Q 015371 169 DLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 169 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
|+.+++.+..+..+ ..+.+++|+ ++++.+ ++++.++.|++||++ ..+....+. +...+.+++|+|++++|++
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEE
T ss_pred ECCCCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEE
Confidence 99999888887755 456999999 777666 678889999999975 445554444 5567899999999999988
Q ss_pred ee---cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC
Q 015371 248 NG---KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 324 (408)
Q Consensus 248 ~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 324 (408)
++ .++.|++||+++ .+.+..+..+.. ...++|+|++
T Consensus 217 ~~~~~~~~~v~~~d~~~----------------------------------~~~~~~~~~~~~-------~~~~~~s~dg 255 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGT----------------------------------NKITARIPVGPD-------PAGIAVTPDG 255 (391)
T ss_dssp EEECSSCCEEEEEETTT----------------------------------TEEEEEEECCSS-------EEEEEECTTS
T ss_pred EecCcCCCcEEEEECCC----------------------------------CeEEEEEecCCC-------ccEEEEccCC
Confidence 88 689999999987 233444444432 2344788899
Q ss_pred cEE-EEeeCCCeEEEEECCCCceeEEEccCCCCee---------------eeeEeCCC----------CeEEeecCCCcE
Q 015371 325 KYI-YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR---------------DCCWHPIY----------PMLISSSWDCNI 378 (408)
Q Consensus 325 ~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~---------------~~~~~~~~----------~~l~s~~~dg~v 378 (408)
++| ++++.|+.|++||+.+++.+..+..|..+.. ...|+.+. -.+...+.|..+
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 877 5668899999999999999888876654321 11222221 246666778999
Q ss_pred EEEeeCCCCC
Q 015371 379 VRWEIPGIGE 388 (408)
Q Consensus 379 ~iw~~~~~~~ 388 (408)
++|++..+..
T Consensus 336 ~~W~~~~g~~ 345 (391)
T 1l0q_A 336 WKWDFGDGSS 345 (391)
T ss_dssp EEEECSSSCE
T ss_pred EEEECCCCcc
Confidence 9999977653
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6e-33 Score=236.33 Aligned_cols=292 Identities=12% Similarity=0.124 Sum_probs=203.3
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCce-eeecccCceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPW-KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
..+++|||||++++++....+ +++...... ....+...+..+++.+++++++ +++.|++|++||..+++.+....
T Consensus 22 V~~v~fs~dg~~la~g~~~~~-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-- 98 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKSF-EIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-- 98 (355)
T ss_dssp CCEEEECTTSSEEEEECSSEE-EEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--
T ss_pred eEEEEECCCCCEEEEEcCCEE-EEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--
Confidence 468999999999998877754 455554432 2233334688999999988874 56778999999999987766542
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC-ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE--
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA-- 158 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-- 158 (408)
+...|.+++|+++. ++++ .++.|++||+.+. +... .+.. +...+++++ .++++
T Consensus 99 --~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~--~~~~---------------~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 99 --VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT--DDIR---------------FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp --CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS--CCEE---------------EEEEEEEET--TEEEEEE
T ss_pred --CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE--Eecc---------------CCceEEEEc--cEEEEeC
Confidence 33479999998764 3433 4789999999876 3321 1111 123345555 56666
Q ss_pred EecCCeEEEEECCCCc----------------ceeeecCcCCCceEEEEecCCCCEEEEecCCCe-EEEEeccccccCCc
Q 015371 159 AGSDNFIYVYDLQANK----------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL-CKVWDRRCFISKGR 221 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 221 (408)
|+.+|.|++||+.+++ .+..+.+|..+|++++|+ |++++|++|+.|++ |++||++ .++
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~----~~~ 229 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTE----DGV 229 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETT----TCC
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECC----CCc
Confidence 5789999999998765 267789999999999999 89999999999998 9999975 677
Q ss_pred cceeee-c-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce
Q 015371 222 ANGVLM-G-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 299 (408)
Q Consensus 222 ~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
.+..+. + |...|.+++|+|++++|++++.|+.|++||++......... .... . .+.. . ......
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~--~~~~---~----~~~~---~--~~~~~~ 295 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA--LKGW---I----NMKY---F--QSEWSL 295 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEE--TTTT---E----ECCC---C--CCSSCS
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccc--ccce---e----eccc---c--ccccce
Confidence 888887 5 99999999999999999999999999999998743221110 0000 0 0000 0 000000
Q ss_pred eeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 300 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
..+.-..... .....++|++++++|++++.||.+++|++..+
T Consensus 296 ~~~~~~~~~~---~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 296 CNFKLSVDKH---VRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EEEECCCCTT---CCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eEEEeccCCC---CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000000000 00022368889999999999999999998643
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.3e-33 Score=241.35 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=166.2
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEE--EecccccceeeEEEEEeCC--------CCceEEEeecCcEEEEEEC
Q 015371 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSP--------DQRFLVYASICAIVNIVDV 114 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~~w~~ 114 (408)
...+++++.+||+++.|++|+|||..++.... ......+|...|.+++|+| |+++||+++.|++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 33444566789999999999999999886543 2345678999999999998 8899999999999999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEecCCeEEEEECCCCcceee---------------
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLR--------------- 178 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--------------- 178 (408)
.++... .....+. .++.+++|+|++. +|++++.|+.|++||+++++....
T Consensus 174 ~~~~~~--~~~~~~~------------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~ 239 (393)
T 4gq1_A 174 TDEGPI--LAGYPLS------------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL 239 (393)
T ss_dssp ETTEEE--EEEEECS------------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred CCCcee--eeecCCC------------CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence 776542 2222332 2699999999874 799999999999999987654322
Q ss_pred ----------ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEE-----------
Q 015371 179 ----------IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID----------- 237 (408)
Q Consensus 179 ----------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~----------- 237 (408)
..+|...+.++.|+++++..|++++.|+++++||+. .......+..|...+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp ESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSS
T ss_pred ccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEEEcccccccccc
Confidence 135778899999998899999999999999999975 3333333333433333332
Q ss_pred -------ecC--CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccce
Q 015371 238 -------SRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 308 (408)
Q Consensus 238 -------~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
++| ++.++++++.||.|++||+.+ +.....+..|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~----------------------------------~~~~~~~~~~~~- 360 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE----------------------------------KDSNSIPIQLGM- 360 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC----------------------------------TTCCEEEEECSS-
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCC----------------------------------CcEEEEecCCCC-
Confidence 222 334667788899999999987 333444444442
Q ss_pred eeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 309 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
.+.+++|+|||++||+++.+| +.+|.+
T Consensus 361 -----~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 361 -----PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp -----CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred -----cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 345668999999999998776 666654
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=232.48 Aligned_cols=265 Identities=9% Similarity=0.039 Sum_probs=195.8
Q ss_pred ecCCccEEEeecCceEEEEEEecCceeee-cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe---------eEEEe
Q 015371 9 YSGRGRFSAADSCHVLSRYLPVNGPWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW---------KIQKD 78 (408)
Q Consensus 9 ~s~dg~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---------~~~~~ 78 (408)
+.+|+.++++++.+...++|.......+. -....|.++.|+|+ +++++.|++|++|+..... .+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 44678889998888888888765433221 12577889999998 9999999999999876432 12211
Q ss_pred cccccceeeEEEEEeCC--CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEE
Q 015371 79 IETKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 156 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (408)
...|...|.+++|+| +++++++++.||.|++||+.+++....... .+...+.+++|+|++.+|
T Consensus 121 --~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------~~~~~i~~~~~~pdg~~l 185 (343)
T 3lrv_A 121 --EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA-------------KSDVEYSSGVLHKDSLLL 185 (343)
T ss_dssp --ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-------------CSSCCCCEEEECTTSCEE
T ss_pred --ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-------------CCCCceEEEEECCCCCEE
Confidence 123446799999999 999999999999999999998765322111 122259999999999999
Q ss_pred EEEecCCeEEEEECCCCcce-eeecC-cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee---cccC
Q 015371 157 VAAGSDNFIYVYDLQANKCS-LRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---GHLE 231 (408)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~ 231 (408)
++|+.||.|++||+++++.. ..+.. |..+|++++|+ |++.+|++++ |+.|++||++. ......+. .|..
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs-~~g~~l~s~~-~~~v~iwd~~~----~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA-DNGYWMVVEC-DQTVVCFDLRK----DVGTLAYPTYTIPEF 259 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC-TTSSEEEEEE-SSBEEEEETTS----STTCBSSCCCBC---
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEEcCC----CCcceeecccccccc
Confidence 99999999999999999887 77887 99999999999 8999999999 55999999873 33333222 2434
Q ss_pred CeE--EEEecCCCCeEEEeec-CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccce
Q 015371 232 GIT--FIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 308 (408)
Q Consensus 232 ~i~--~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
.+. +++|+|++++|++++. |+.+++|++..... ....
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~----------------------------------~~~~------ 299 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK----------------------------------NWTK------ 299 (343)
T ss_dssp --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC----------------------------------SEEE------
T ss_pred cccceEEEECCCCCEEEEecCCCCcEEEEEEccccc----------------------------------ceEe------
Confidence 444 6999999999999988 99999999865211 0000
Q ss_pred eeEEEEEeeccccC---CCcEEEEeeCCCeEEEEEC
Q 015371 309 RTLIRCYFSPEYST---AQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 309 ~~~~~~~~~~~~s~---~~~~l~~~~~dg~i~vwd~ 341 (408)
.......|++ +.+.+++++.||.+.++-.
T Consensus 300 ----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 300 ----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred ----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 1223335666 7889999999999988753
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.7e-30 Score=228.23 Aligned_cols=273 Identities=14% Similarity=0.113 Sum_probs=210.3
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCce--------eeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEE
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPW--------KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ 76 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--------~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~ 76 (408)
.+++|+|++.++++++.......++..... .+.+|.+.|.+++|+|+++++++++.|+.|++||+++++...
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 478999988888877665545555544322 234889999999999999999999999999999999876665
Q ss_pred EecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCE
Q 015371 77 KDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQE 155 (408)
Q Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (408)
... .|...+.+++|+|+++.+++++ .++.|++||+.+++.... +.... .+.+++|+|++++
T Consensus 206 ~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~-------------~~~~~~~~~~g~~ 267 (433)
T 3bws_A 206 TVD---LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--TDKIG-------------LPRGLLLSKDGKE 267 (433)
T ss_dssp EEE---CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--CCCCS-------------EEEEEEECTTSSE
T ss_pred EEc---CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--ecCCC-------------CceEEEEcCCCCE
Confidence 443 3445799999999999886554 799999999987765322 22211 4899999999999
Q ss_pred EEEEe--------cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCC-EEEEecCCCeEEEEeccccccCCccceee
Q 015371 156 LVAAG--------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVL 226 (408)
Q Consensus 156 l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 226 (408)
+++++ .|+.|++||+.+++....+ .|...+.+++|+ ++++ ++++++.|+.|++||++ .++....+
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~----~~~~~~~~ 341 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLK----EKKVQKSI 341 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEEC-SSTTEEEEEETTTTEEEEEETT----TTEEEEEE
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEEC-CCCCEEEEEecCCCEEEEEECC----CCcEEEEe
Confidence 99988 4889999999998876665 356688999999 6665 66777999999999975 45555555
Q ss_pred ecccCCeEEEEecCCCCeEEEeec---------------CCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 227 MGHLEGITFIDSRRDGRYFISNGK---------------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 227 ~~~~~~i~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
. +...+.+++|+|+++++++++. ||.|++||+.+
T Consensus 342 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~------------------------------ 390 (433)
T 3bws_A 342 P-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT------------------------------ 390 (433)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT------------------------------
T ss_pred c-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC------------------------------
Confidence 4 6788999999999998888876 57999999977
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCC
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVS 343 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~ 343 (408)
.+.+..+..+. .+..++|+|+|++|++++. |+.|++|++..
T Consensus 391 ----~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 391 ----DTVKEFWEAGN-------QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ----TEEEEEEECSS-------SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ----CcEEEEecCCC-------CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 23344444322 1244578899999998875 99999999853
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=2e-29 Score=225.12 Aligned_cols=334 Identities=11% Similarity=0.046 Sum_probs=237.2
Q ss_pred eeEecCCccEEEeecCceEEEEEEecCc---eeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEc--CCCeeEEEecc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNGP---WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNV--DKNWKIQKDIE 80 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~ 80 (408)
+.+++|+++++++........+++.... ..+..+.. +.+++|+|||++|++++.|++|++||+ .+++.+..+..
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 3458899998888877776777765443 34442223 899999999999999999999999999 77765554332
Q ss_pred cccceeeEEEEEeCC----CCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC-ccceEEEEEcCCCC
Q 015371 81 TKALRWTITDTSLSP----DQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADGDED-EFGIFSVKFSTDGQ 154 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 154 (408)
...+..++|+| ||++|++++. +++|.+||..+.+............ .. ...| ...+..+.++|++.
T Consensus 221 ----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~---~~-~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 221 ----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV---DT-QTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp ----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS---SS-CCEESCCCEEEEEECSSSS
T ss_pred ----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc---Cc-cccccCCceEEEEECCCCC
Confidence 22579999999 9999998884 8999999998876643332211000 00 0001 12588999999776
Q ss_pred EE-EEEecCCeEEEEECCCCccee--eecCcCCCceEEEEecCCCCEEEE-ecCCCeEEEEeccccccCCccceeeec--
Q 015371 155 EL-VAAGSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMG-- 228 (408)
Q Consensus 155 ~l-~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 228 (408)
.+ ++...++.|.+||+.+.+.+. .+. +...+.++.|+ |+++++++ +..+++|.+||+. .++....+..
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~g~ 366 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDVGK 366 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSS
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeeccCC
Confidence 54 555668999999998876544 333 56678899999 78886654 5568999999975 5666666653
Q ss_pred --ccCCeEEEEecCC-CCeEEEee-cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec
Q 015371 229 --HLEGITFIDSRRD-GRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 304 (408)
Q Consensus 229 --~~~~i~~~~~~~~-~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
|.+....+ ++|+ +..++++. .|++|.+||+.+..... ...+.+..+..
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------------------------~~~~~v~~l~~ 418 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------------------------YAWKKVAELQG 418 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------------------TBTSEEEEEEC
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------------------------hcCeEEEEEEc
Confidence 54444333 4676 56666665 58999999997621110 01355666766
Q ss_pred ccceeeEEEEEeeccccCCCcEEEEee-------CCCeEEEEECCCCcee-EEE--------ccCCCCeeeeeEeCCCCe
Q 015371 305 HSVLRTLIRCYFSPEYSTAQKYIYTGS-------SDNSVYIYDLVSGAQV-AKL--------DFHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~-~~~--------~~~~~~v~~~~~~~~~~~ 368 (408)
+... .+.+.++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|+|+.
T Consensus 419 ~g~~------~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 419 QGGG------SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp SCSC------CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE
T ss_pred CCCC------ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE
Confidence 6522 23447899999999987 2679999999999877 443 345678999999999998
Q ss_pred EEee-----cCCCcEEEEeeCCCCC
Q 015371 369 LISS-----SWDCNIVRWEIPGIGE 388 (408)
Q Consensus 369 l~s~-----~~dg~v~iw~~~~~~~ 388 (408)
|+.+ +.|+.|.|||..+++.
T Consensus 493 ~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 493 VWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEEEeecCCCCCCeEEEEECCCceE
Confidence 7755 3489999999988755
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=2.1e-29 Score=224.96 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=214.2
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEEC--CCCceeeeee
Q 015371 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV--GSSARESLAN 124 (408)
Q Consensus 47 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~--~~~~~~~~~~ 124 (408)
+|+|++.++++++.|++|.+||..+++.+..+... + .+..++|+||+++|++++.++.|++||+ .+.+. ...
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~--~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAE 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC--c--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE--EEE
Confidence 48999999999999999999999998766554322 2 2789999999999999999999999999 55543 233
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcC----CCCEEEEEec-CCeEEEEECCCCcceeeecCc-----------CCCceE
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFST----DGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-----------KSDVNT 188 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~ 188 (408)
+.... .+..++|+| +|+++++++. ++.|.+||..+++++..+..+ ...+..
T Consensus 218 i~~g~-------------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 218 IKIGI-------------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp EECCS-------------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred EecCC-------------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 33222 478999999 9999999985 899999999999988877542 237889
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccce-eeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCcc
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 266 (408)
+.++|.+..++++...++.|.+||+. ..+.+. ....+...+..+.|+|+|++|++++ .+++|.+||+.+.
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---- 356 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---- 356 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----
T ss_pred EEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----
Confidence 99995567778888899999999975 222222 1223566788899999999876554 5889999999873
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC-CcEEEEee-CCCeEEEEECCC-
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS-SDNSVYIYDLVS- 343 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~-~dg~i~vwd~~~- 343 (408)
+.+..+.............+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 357 ------------------------------~l~~~i~~g~~ph~g~g~~~---~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 357 ------------------------------RLSALVDVGKTPHPGRGANF---VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp ------------------------------EEEEEEECSSSBCCTTCEEE---EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred ------------------------------eEEEeeccCCCCCCCCCccc---CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 33333332110000000111 2455 66677765 589999999988
Q ss_pred ------CceeEEEccCCCCeeeeeEeCCCCeEEeec-------CCCcEEEEeeCCCCCC
Q 015371 344 ------GAQVAKLDFHNAPVRDCCWHPIYPMLISSS-------WDCNIVRWEIPGIGEA 389 (408)
Q Consensus 344 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~dg~v~iw~~~~~~~~ 389 (408)
++.++++..|...+..++++|++++|++++ .+++|.+||+.+.+..
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 899999999998899999999999999987 2789999999987654
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=3.7e-30 Score=223.37 Aligned_cols=285 Identities=13% Similarity=0.052 Sum_probs=208.1
Q ss_pred ccCceeEEEEcCCCC-eEEEEe----CCC----cEEEEEc--CCCeeEEEecccccceeeEEEEEeCC------------
Q 015371 39 MNSRVYTSQFSNDGS-FFVAAS----QES----NIKVYNV--DKNWKIQKDIETKALRWTITDTSLSP------------ 95 (408)
Q Consensus 39 h~~~v~~~~~s~~~~-~l~t~~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~------------ 95 (408)
+...+...+|++.|. ++++|+ .|| .|+|||+ .+++.+.. .....|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-NSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-EEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-eEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 345788888988875 566776 467 8999999 88765532 12233434555565553
Q ss_pred --CCceEEEeecC------cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC---e
Q 015371 96 --DQRFLVYASIC------AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN---F 164 (408)
Q Consensus 96 --~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~ 164 (408)
.+..++.++.+ +.|++||+..... ..+..+.. .+.+++|+|+|++|++++.++ .
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~~~~~------------~v~~~~~Spdg~~la~~s~~~~~~~ 204 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVHRSPQ------------PLMSPAWSPDGSKLAYVTFESGRSA 204 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---EEEEEESS------------CEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCCC---EEEeCCCC------------cceeeEEcCCCCEEEEEEecCCCcE
Confidence 25667666654 7999999976443 22223333 699999999999999998875 9
Q ss_pred EEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCCe--EEEEeccccccCCccceeeecccCCeEEEEecCC
Q 015371 165 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 241 (408)
|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++. |++||++ .++ ...+..|...+.+++|+|+
T Consensus 205 i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 205 LVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp EEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECTT
T ss_pred EEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECCC
Confidence 999999988765 466688899999999 8888776 6666654 8999974 333 3567778889999999999
Q ss_pred CCeEEEeec-CC--eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeec
Q 015371 242 GRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 318 (408)
Q Consensus 242 ~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
|++|++++. ++ .|.+||+.+.. ...+..+. .....+
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~------~~~~~~ 316 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEG------SQNQDA 316 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSS------SEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCC------CcccCe
Confidence 999988876 44 67777877622 12222222 123456
Q ss_pred cccCCCcEEEEeeCC---CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCC---cEEEEeeCCCCCC
Q 015371 319 EYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC---NIVRWEIPGIGEA 389 (408)
Q Consensus 319 ~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~~~~~~ 389 (408)
+|+|||++|++++.+ +.|++||+.+++. ..+..|. .+.+++|+|+|++|++++.|+ .|++||+.+....
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~ 391 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 391 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE
Confidence 789999999988864 5899999998876 4455554 899999999999999888877 7999998765443
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.7e-29 Score=219.29 Aligned_cols=293 Identities=14% Similarity=0.110 Sum_probs=212.7
Q ss_pred eeEecCCcc-EEEeec--------CceEEEEEEe--cCc-----eeeecccCceeEEEEcC--------------CCCeE
Q 015371 6 EVNYSGRGR-FSAADS--------CHVLSRYLPV--NGP-----WKVDGMNSRVYTSQFSN--------------DGSFF 55 (408)
Q Consensus 6 ~~~~s~dg~-~~~~~~--------~~~~~~~~~~--~~~-----~~l~~h~~~v~~~~~s~--------------~~~~l 55 (408)
..+|+++|. +++.++ .....++|.. ... ..+.+|...+..+++++ .+..+
T Consensus 67 ~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l 146 (415)
T 2hqs_A 67 PAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRI 146 (415)
T ss_dssp HHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEE
T ss_pred HHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEE
Confidence 345666665 343332 1124566665 322 34778998898888875 15666
Q ss_pred EEEeCC------CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc---EEEEEECCCCceeeeeeee
Q 015371 56 VAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVNIVDVGSSARESLANVT 126 (408)
Q Consensus 56 ~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~~~~ 126 (408)
+.++.+ +.|++||++.. ....+ ..|...+.+++|+|||+.|++++.++ .|++||+.+++...+ .
T Consensus 147 ~~~s~~~~~~~~~~i~i~d~~g~-~~~~l---~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l---~ 219 (415)
T 2hqs_A 147 AYVVQTNGGQFPYELRVSDYDGY-NQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV---A 219 (415)
T ss_dssp EEEEECSSSSCCEEEEEEETTSC-SCEEE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE---E
T ss_pred EEEEecCCCCccceEEEEcCCCC-CCEEE---eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe---e
Confidence 666554 79999999754 33332 23455899999999999999999875 999999998765322 2
Q ss_pred eeeeeeeecCCCCCccceEEEEEcCCCCEEE-EEecCC--eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec
Q 015371 127 IHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
.+. ..+.+++|+|||++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+ |+++.|++++
T Consensus 220 ~~~------------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s 285 (415)
T 2hqs_A 220 SFP------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTS 285 (415)
T ss_dssp CCS------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEE
T ss_pred cCC------------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEE
Confidence 222 2589999999999888 555554 599999988875 5677788899999999 8888888777
Q ss_pred C-CC--eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC---CeEEEEeCCCCcCccccccccccccc
Q 015371 204 D-DS--LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDW 277 (408)
Q Consensus 204 ~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~ 277 (408)
. ++ .|.+||+. .++ ...+..+...+..++|+|+|++|++++.+ ..|++||+.+..
T Consensus 286 ~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-------------- 346 (415)
T 2hqs_A 286 DQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-------------- 346 (415)
T ss_dssp CTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--------------
T ss_pred CCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC--------------
Confidence 5 45 57777864 232 34455677788999999999999988764 589999998722
Q ss_pred cceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC---eEEEEECCCCceeEEEccCC
Q 015371 278 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHN 354 (408)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~ 354 (408)
...+..+. ....++|+|+|++|++++.++ .|++||+. ++....+..|.
T Consensus 347 ---------------------~~~l~~~~-------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~ 397 (415)
T 2hqs_A 347 ---------------------VQVLSSTF-------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD 397 (415)
T ss_dssp ---------------------EEECCCSS-------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSS
T ss_pred ---------------------EEEecCCC-------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCC
Confidence 12222221 234557999999999988877 79999986 66678888999
Q ss_pred CCeeeeeEeCCCC
Q 015371 355 APVRDCCWHPIYP 367 (408)
Q Consensus 355 ~~v~~~~~~~~~~ 367 (408)
+.|.+++|+|...
T Consensus 398 ~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 398 GQVKFPAWSPYLH 410 (415)
T ss_dssp SEEEEEEECCCCC
T ss_pred CCCcCCccccccc
Confidence 9999999999754
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=6.5e-30 Score=207.39 Aligned_cols=247 Identities=13% Similarity=0.083 Sum_probs=163.5
Q ss_pred CceeeecccCceeEEEEcCCCCeEEEEe--CCCcEEEEEcC--CC-eeEEEecccccceeeEEEEEeCCCCceEEEee--
Q 015371 32 GPWKVDGMNSRVYTSQFSNDGSFFVAAS--QESNIKVYNVD--KN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-- 104 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~--~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 104 (408)
..+.+.+|+.+|..+.+.||..-|++.. .=..-.++.+. .. +.........++...|..+ ++++.+.++.
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g 154 (356)
T 2w18_A 78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTL 154 (356)
T ss_dssp EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSS
T ss_pred eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccC
Confidence 3467889999999999999754433321 11111122211 11 1111111222333344443 4566555533
Q ss_pred cCcEEEEEECCC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC---CCCEEEEEecCCeEEEEECCCCcceeeec
Q 015371 105 ICAIVNIVDVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQANKCSLRIP 180 (408)
Q Consensus 105 ~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 180 (408)
.|+.|++|++.. ++. ......+.. .+..++|++ ++.+|++++.|++|++||+++++++.++.
T Consensus 155 ~d~~V~~~~~s~dG~~--~~s~~~~~~------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGG--KENQFLMPP------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp TTCEEEEEEECTTSCE--EEEEEECCC------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEEECCCCce--eeeeccCCC------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 588899999844 433 222223322 688888888 77999999999999999999999999997
Q ss_pred CcC---CCceEEEEecCCCCEE------------EEecCCCeEEEEeccccccCCccceee-----ecccCCeEEEEecC
Q 015371 181 AHK---SDVNTVCFADETGHLI------------FSGSDDSLCKVWDRRCFISKGRANGVL-----MGHLEGITFIDSRR 240 (408)
Q Consensus 181 ~~~---~~v~~l~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~ 240 (408)
+|. ..+.+++|+ |++.++ ++|+.|++|++||.. .++.+..+ .+|...+.+..++
T Consensus 221 g~~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~----tgk~l~v~~~~~p~Gh~~~~lsg~~s- 294 (356)
T 2w18_A 221 IDDSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK----TTLSVGVMLYCLPPGQAGRFLEGDVK- 294 (356)
T ss_dssp CCC---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETT----TTEEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred CCCcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECC----CCEEEEEEEeeccCCCcceeEccccC-
Confidence 654 367778999 678776 568889999999965 55554443 3666555544444
Q ss_pred CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc
Q 015371 241 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 320 (408)
Q Consensus 241 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (408)
+.++++++.|++|+|||+.+ ++.+.++.+|..... ...+|
T Consensus 295 -g~~lASgS~DgTIkIWDl~t----------------------------------Gk~l~tL~gH~~~vv-----s~vaf 334 (356)
T 2w18_A 295 -DHCAAAILTSGTIAIWDLLL----------------------------------GQCTALLPPVSDQHW-----SFVKW 334 (356)
T ss_dssp -TTEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCC--CCC-----CEEEE
T ss_pred -CCEEEEEcCCCcEEEEECCC----------------------------------CcEEEEecCCCCCeE-----EEEEE
Confidence 78899999999999999998 567778877753211 12479
Q ss_pred cCCCcEEEEeeCCCeEEEEEC
Q 015371 321 STAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 321 s~~~~~l~~~~~dg~i~vwd~ 341 (408)
||||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999995
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=3.4e-28 Score=235.21 Aligned_cols=360 Identities=11% Similarity=0.026 Sum_probs=235.0
Q ss_pred ceeeEecCCccEEEeecCceEEEEEE--ecCceeeecccCceeEEEEcCCCCeEEEEeCC------CcEEEEEcCCCeeE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLP--VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE------SNIKVYNVDKNWKI 75 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d------g~i~iw~~~~~~~~ 75 (408)
.++.+|||+ .++......+ ..++ ......+.+|.+.|.+++|||||++||+++.+ ..|++|++.++. .
T Consensus 17 ~~~~~~S~~--~iaf~~~~~l-~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~ 92 (1045)
T 1k32_A 17 LLNPDIHGD--RIIFVCCDDL-WEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-I 92 (1045)
T ss_dssp CEEEEEETT--EEEEEETTEE-EEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-E
T ss_pred EeCcEEeCC--EEEEEECCcE-EEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-e
Confidence 356788865 3333222222 2333 34567889999999999999999999988643 479999998875 2
Q ss_pred EEecccccceeeE-------EEEEeCCCCceEEEeecC------cEEEEEECCCCceeeeeeeeee--------------
Q 015371 76 QKDIETKALRWTI-------TDTSLSPDQRFLVYASIC------AIVNIVDVGSSARESLANVTIH-------------- 128 (408)
Q Consensus 76 ~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~-------------- 128 (408)
.. ...|...+ ..++|+|||+.+++++.+ ..+.+|++.++....+......
T Consensus 93 ~~---lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~ 169 (1045)
T 1k32_A 93 KR---ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 169 (1045)
T ss_dssp EE---CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEES
T ss_pred EE---cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEecc
Confidence 22 23344466 899999999966666643 4688888876654322111000
Q ss_pred ----------------------eeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC-CcceeeecCcCCC
Q 015371 129 ----------------------KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSD 185 (408)
Q Consensus 129 ----------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~ 185 (408)
....+... ..|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+..|. .
T Consensus 170 ~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~ 246 (1045)
T 1k32_A 170 TFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D 246 (1045)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-S
T ss_pred CCCccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-C
Confidence 00000001 345667889999988 6667777788888887643 33445555554 4
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-----------ccCCeEEEEec-CCCCeEEEeecCCe
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-----------HLEGITFIDSR-RDGRYFISNGKDQT 253 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~ 253 (408)
+..++|+ |+++.|+.+ .++.|.+||+. ...+..+.. |...+..++|+ |+|++|++++ ++.
T Consensus 247 ~~~~~~S-pDG~~la~~-~~~~i~~~d~~-----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~ 318 (1045)
T 1k32_A 247 YYPRHLN-TDGRRILFS-KGGSIYIFNPD-----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ 318 (1045)
T ss_dssp SCEEEEE-ESSSCEEEE-ETTEEEEECTT-----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred cceeeEc-CCCCEEEEE-eCCEEEEecCC-----ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence 6788999 888888877 48999999962 222223333 44578999999 9999999887 789
Q ss_pred EEEEeCCCCcCcccccc---cccccccc-ceeecccccceee---ccCCCcceeeeecccceeeEEEEEeeccccCCCcE
Q 015371 254 TKLWDIRKMSSNTTDNS---RLRDYDWD-YRWMEYPSYARRL---KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 326 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (408)
+.+|++........... ......|. ...+.+......+ ..........+.++. ..+..++|||||++
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~------~~~~~~~~SpDG~~ 392 (1045)
T 1k32_A 319 AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL------GNVFAMGVDRNGKF 392 (1045)
T ss_dssp EEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC------CSEEEEEECTTSSE
T ss_pred EEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCc------cceeeeEECCCCCE
Confidence 99999876543221110 11111111 1111111111111 111112222222222 22345689999999
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCC----------cEEEEeeCCCC
Q 015371 327 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC----------NIVRWEIPGIG 387 (408)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----------~v~iw~~~~~~ 387 (408)
|++++.++.|++||+.+++....+..|...+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 393 la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 393 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999999999999998888878999999999999999998887654 89999998754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1e-28 Score=231.51 Aligned_cols=285 Identities=13% Similarity=0.079 Sum_probs=207.3
Q ss_pred cCceeEEEEcCCCCeEEEEeC-CC-----cEEEEEcCCCeeEEEecccccce----------------------eeEEEE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQ-ES-----NIKVYNVDKNWKIQKDIETKALR----------------------WTITDT 91 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~v~~~ 91 (408)
...|.+++|||||++|++++. |+ .|++||+.+++..... ....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456999999999999999998 88 8999999887554332 222221 347899
Q ss_pred EeCCCCceEEEeecCcEEEEEECCCC---ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEE
Q 015371 92 SLSPDQRFLVYASICAIVNIVDVGSS---ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 168 (408)
Q Consensus 92 ~~~~~~~~l~~~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 168 (408)
+|+|||++|++++. +.|++||+.++ .... +..+ ...+..++|+|||++|++++ ++.|++|
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~------------~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHG------------EGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCS------------SSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEE---cccC------------CcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 99999999999886 99999999877 4322 2222 22589999999999999887 5799999
Q ss_pred ECCCCcceeeecCcCCC----------------ceEEEEecCCCCEEEEecCCC--------------------------
Q 015371 169 DLQANKCSLRIPAHKSD----------------VNTVCFADETGHLIFSGSDDS-------------------------- 206 (408)
Q Consensus 169 d~~~~~~~~~~~~~~~~----------------v~~l~~~~~~~~~l~~~~~dg-------------------------- 206 (408)
|+.+++.......+... +.+++|+ |+++.|++++.|+
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 99988766544433332 4789999 8999898887765
Q ss_pred -------eEEEEeccccccC-Cccceeee--cccCCeEEEEecCCCCeEEEeec-----CCeEEEEeCCCCcCccccccc
Q 015371 207 -------LCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSRRDGRYFISNGK-----DQTTKLWDIRKMSSNTTDNSR 271 (408)
Q Consensus 207 -------~i~iwd~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~ 271 (408)
.|.+||+. . ++...... .|...+..++| |||++|++++. +..|++||+.+..
T Consensus 257 g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-------- 323 (741)
T 2ecf_A 257 GDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-------- 323 (741)
T ss_dssp TSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--------
T ss_pred CCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--------
Confidence 78888864 3 33332222 46778999999 99999987654 5679999988732
Q ss_pred cccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC-CCceeEEE
Q 015371 272 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-SGAQVAKL 350 (408)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~ 350 (408)
....+..+... .......++|+|||+++++++.||.+++|.+. +++ ...+
T Consensus 324 --------------------------~~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 324 --------------------------QRVLAHETSPT--WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp --------------------------EEEEEEEECSS--CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES
T ss_pred --------------------------eEEEEEcCCCC--cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee
Confidence 22222221100 00012356799999999999999987777665 445 7778
Q ss_pred ccCCCCeeee-eEeCCCCeEE-eecCCC--cEEEEeeCC
Q 015371 351 DFHNAPVRDC-CWHPIYPMLI-SSSWDC--NIVRWEIPG 385 (408)
Q Consensus 351 ~~~~~~v~~~-~~~~~~~~l~-s~~~dg--~v~iw~~~~ 385 (408)
..|...|..+ .|+|+++.|+ +++.|+ .+++|++..
T Consensus 375 ~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 375 THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8888888887 5999999665 455555 899999865
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.7e-28 Score=230.03 Aligned_cols=329 Identities=12% Similarity=0.038 Sum_probs=221.8
Q ss_pred ceeeEecCCccEEEeecC-ce-----EEEEEEecC--ce-eeeccc------------------------CceeEEEEcC
Q 015371 4 GREVNYSGRGRFSAADSC-HV-----LSRYLPVNG--PW-KVDGMN------------------------SRVYTSQFSN 50 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~-~~-----~~~~~~~~~--~~-~l~~h~------------------------~~v~~~~~s~ 50 (408)
..+++|||||++++..+. +. ....+.... .. .+..+. ..|.+++|||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 468999999998887654 33 444554332 22 233333 2389999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCe--eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIH 128 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (408)
||++|++++. +.|++||+.++. .... ...+...+..++|+|||++|++++ ++.|++||+.+++...+.....
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~- 192 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS- 192 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC-
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc-
Confidence 9999999986 899999998762 2222 223344799999999999999887 5699999998876543222110
Q ss_pred eeeeeecCC----CCCccceEEEEEcCCCCEEEEEecCC---------------------------------eEEEEECC
Q 015371 129 KGLDFSADG----DEDEFGIFSVKFSTDGQELVAAGSDN---------------------------------FIYVYDLQ 171 (408)
Q Consensus 129 ~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~ 171 (408)
... ..... .+....+..+.|+|||++|++++.|+ .|++||+.
T Consensus 193 ~~~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 193 TTI-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp SSE-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred cce-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 000 00000 00001247799999999999988765 89999998
Q ss_pred C-Ccceeeec--CcCCCceEEEEecCCCCEEEEecC-----CCeEEEEeccccccCCccceeeecccC----CeEEEEec
Q 015371 172 A-NKCSLRIP--AHKSDVNTVCFADETGHLIFSGSD-----DSLCKVWDRRCFISKGRANGVLMGHLE----GITFIDSR 239 (408)
Q Consensus 172 ~-~~~~~~~~--~~~~~v~~l~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~----~i~~~~~~ 239 (408)
+ ++...... .|...+..++| |+++.|++++. +..|++||+. .++....+..+.. .+..+.|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred CCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCCcCCcCCceEEC
Confidence 8 77554432 46778999999 56777776543 5679999975 4555555554443 45688999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeec-
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP- 318 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (408)
|||+++++++.||.+++|.+... +. ...+..+... +..+
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~---------------------------------~~-~~~l~~~~~~------v~~~~ 385 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSK---------------------------------GK-AAALTHGNWS------VDELL 385 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSS---------------------------------SC-EEESCCSSSC------EEEEE
T ss_pred CCCeEEEEecCCCccEEEEEcCC---------------------------------CC-eeeeeecceE------EEeEe
Confidence 99999899999998888876531 12 2333333211 1122
Q ss_pred cccCCCcEEEE-eeCCC--eEEEEECCC-CceeEEEccCCCCeeeeeEeCCCCeEEeecCC----CcEEEEeeCCC
Q 015371 319 EYSTAQKYIYT-GSSDN--SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD----CNIVRWEIPGI 386 (408)
Q Consensus 319 ~~s~~~~~l~~-~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~~~~~ 386 (408)
.|+|+++.|+. ++.++ .+++|++.. ++....+.. ...+..++|+||+++|+....+ +.+.+|+..+.
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 47888987754 44455 899999864 555666765 6678899999999987765443 57888887543
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.97 E-value=6e-28 Score=205.27 Aligned_cols=281 Identities=11% Similarity=0.121 Sum_probs=186.5
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-cEEEEEECC--CCceeeeeeeeeeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVNIVDVG--SSARESLANVTIHKG 130 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~w~~~--~~~~~~~~~~~~~~~ 130 (408)
++++++.|+.|++|+++........ ....+...+.+++|+|++++|++++.+ +.|.+|++. +++......+....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 4445578999999999632221111 112234468889999999999988876 999999997 44443333322211
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECC---CCcceeeecCcCCCceEEEEecCCCCEEEEec-CC
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DD 205 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~d 205 (408)
.+..++|+|+++++++++. ++.|.+||+. ..+....+.. ...+.+++|+ ++++++++++ .+
T Consensus 85 ------------~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 85 ------------SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS-PDNRTLWVPALKQ 150 (343)
T ss_dssp ------------CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC-TTSSEEEEEEGGG
T ss_pred ------------CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC-CCCCEEEEecCCC
Confidence 4789999999998877765 7899999994 3344444443 3468999999 7888777766 89
Q ss_pred CeEEEEeccccccCCccce----eeec-ccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCccccccccccccccc
Q 015371 206 SLCKVWDRRCFISKGRANG----VLMG-HLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
+.|.+||+.. .++... .... ....+..++|+|+++++++++ .++.|.+||++......
T Consensus 151 ~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~------------- 214 (343)
T 1ri6_A 151 DRICLFTVSD---DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI------------- 214 (343)
T ss_dssp TEEEEEEECT---TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-------------
T ss_pred CEEEEEEecC---CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-------------
Confidence 9999999852 132221 2222 345788999999999775554 78999999996411100
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe-eCCCeEEEEECC--C--CceeEEEccCC
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLV--S--GAQVAKLDFHN 354 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~vwd~~--~--~~~~~~~~~~~ 354 (408)
.....................++|+|++++|+++ ..++.|.+||+. + .+.+..+..+.
T Consensus 215 -----------------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 277 (343)
T 1ri6_A 215 -----------------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET 277 (343)
T ss_dssp -----------------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS
T ss_pred -----------------EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC
Confidence 0011111000000000112245788899888754 478999999998 2 34555555544
Q ss_pred CCeeeeeEeCCCCeEEeec-CCCcEEEEeeC
Q 015371 355 APVRDCCWHPIYPMLISSS-WDCNIVRWEIP 384 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~ 384 (408)
. +..++|+|++++|++++ .|+.|.+|+++
T Consensus 278 ~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 278 Q-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp S-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred c-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 4 89999999999877776 68999999775
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=2.4e-27 Score=229.31 Aligned_cols=343 Identities=10% Similarity=-0.016 Sum_probs=235.0
Q ss_pred eeEecCCccEEEeecCceEEEEEEecCc--eeeec-----------ccCceeEEEEc-CCCCeEEEEeCCCcEEEEEcCC
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNGP--WKVDG-----------MNSRVYTSQFS-NDGSFFVAASQESNIKVYNVDK 71 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~l~~-----------h~~~v~~~~~s-~~~~~l~t~~~dg~i~iw~~~~ 71 (408)
.++|||||++++......++ .++.... ..+.+ |...+.+++|| |||++||+++ ++.|.+|++.+
T Consensus 249 ~~~~SpDG~~la~~~~~~i~-~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 249 PRHLNTDGRRILFSKGGSIY-IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp EEEEEESSSCEEEEETTEEE-EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred eeeEcCCCCEEEEEeCCEEE-EecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 56899999977765444333 3332111 12222 45579999999 9999999988 78999999987
Q ss_pred CeeEEEeccccccee-eEEEEEeCCCCceEEEeecCcEEE-EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE
Q 015371 72 NWKIQKDIETKALRW-TITDTSLSPDQRFLVYASICAIVN-IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF 149 (408)
Q Consensus 72 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (408)
+.... ...+.. .+..++|+ |++.|++++.++.+. +|++.+++...+. .+ ...+..++|
T Consensus 327 ~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~---~~------------~~~~~~~~~ 386 (1045)
T 1k32_A 327 TYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE---EN------------LGNVFAMGV 386 (1045)
T ss_dssp SBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC---CC------------CCSEEEEEE
T ss_pred CceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec---CC------------ccceeeeEE
Confidence 64332 223333 78999999 999999999888888 9999876543221 22 226899999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCC----------eEEEEeccccccC
Q 015371 150 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS----------LCKVWDRRCFISK 219 (408)
Q Consensus 150 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~ 219 (408)
+|||++|++++.++.|++||+.+++....+..|...+.+++|+ |++++|++++.++ .|++||+. .
T Consensus 387 SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S-pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~ 461 (1045)
T 1k32_A 387 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----G 461 (1045)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----T
T ss_pred CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-CCCCeEEEEecCccccccCCCCCeEEEEECC----C
Confidence 9999999999999999999999998877777899999999999 8999888887654 89999974 3
Q ss_pred CccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccc--cee---ecccccc---eee
Q 015371 220 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD--YRW---MEYPSYA---RRL 291 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~---~~~ 291 (408)
++ ...+..|...+..+.|+|+|++|++++.++....|+.................... ... +...... ..+
T Consensus 462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1045)
T 1k32_A 462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540 (1045)
T ss_dssp TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence 33 66677788889999999999999999998888899876432111000000000000 000 0000000 000
Q ss_pred ccC-CCcceeeeecccceeeEEEEEeeccccCCCcEEEE-------------eeCCCeEEEEECCCCceeEEEccCCCCe
Q 015371 292 KHP-HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT-------------GSSDNSVYIYDLVSGAQVAKLDFHNAPV 357 (408)
Q Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (408)
... ....+..+..+. ..+..+.++|||.++++ ......|++||+.+++..... ..+
T Consensus 541 d~~g~~~~~~~l~~~~------~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v 610 (1045)
T 1k32_A 541 DLNDMYKRSSPINVDP------GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNL 610 (1045)
T ss_dssp CCTTGGGGCEECSCCC------BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEE
T ss_pred cccCHhHceEEcCCCC------CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCc
Confidence 000 001122222222 12334467889987775 123457999999888753332 568
Q ss_pred eeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 358 RDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 358 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
..++|||||+.|++++.| .|++||+.+++
T Consensus 611 ~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 TDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 899999999999998766 89999998876
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=5.6e-28 Score=225.93 Aligned_cols=323 Identities=12% Similarity=0.068 Sum_probs=210.0
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecC---ceeeecccC---ceeEEEEcCCCCeEEEEeCC---------CcEEEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG---PWKVDGMNS---RVYTSQFSNDGSFFVAASQE---------SNIKVYN 68 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~l~~h~~---~v~~~~~s~~~~~l~t~~~d---------g~i~iw~ 68 (408)
..+++|||||++++.+ .+.....+.... ...+.+|.. .|.+++|||||++||+++.+ +.+++||
T Consensus 19 ~~~~~~spdg~~~~~~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYRE-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCCC-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEEe-CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 4678999999987763 333444444322 234555554 49999999999999999764 7788999
Q ss_pred cCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecC-----CCCCccc
Q 015371 69 VDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSAD-----GDEDEFG 143 (408)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 143 (408)
+.+++. ..+.....+...+..++|+|||+.|++++. +.|++||+.+++...+.... .....+... .++....
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~-~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC-CCCceECcccceeEEEEeccC
Confidence 988754 333333444445888999999999999885 79999999887654332211 100000000 0000012
Q ss_pred eEEEEEcCCCCEEEEEecCC----------------------------------eEEEEECCCCcceeeecCc------C
Q 015371 144 IFSVKFSTDGQELVAAGSDN----------------------------------FIYVYDLQANKCSLRIPAH------K 183 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~------~ 183 (408)
+.+++|+|||++|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 47899999999999987653 7999999988765556543 5
Q ss_pred CCceEEEEecCCCCEEEEecC----CCeEEEEeccccccCCccceeeec-ccCCe----EEEEecCCCCeEEEe--ecCC
Q 015371 184 SDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMG-HLEGI----TFIDSRRDGRYFISN--GKDQ 252 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~~~--~~d~ 252 (408)
..+..++|+ |+++++++.+. +..|++||+. .++....+.. +...+ ..+.|+|||+.|+.. ..++
T Consensus 255 ~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 255 YYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp EEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 678999999 88988876643 3579999964 4444444433 33333 378999999977754 4566
Q ss_pred ------eEEEEeC-CCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCc
Q 015371 253 ------TTKLWDI-RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 325 (408)
Q Consensus 253 ------~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (408)
.|.+||+ ..... .....+...... ....++|+|||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~--------------------------------~~~~~l~~~~~~-----~~~~~~~spdg~ 372 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSN--------------------------------DNIQSITSGDWD-----VTKILAYDEKGN 372 (723)
T ss_dssp SSSCEEEEEEECSSCCSSS--------------------------------CCCCBSCCSSSC-----EEEEEEEETTTT
T ss_pred CCcceeEEEEEeccCCCCc--------------------------------cceeEeecCCeE-----EEeeeEEcCCCC
Confidence 4666773 32110 001111111100 111246889999
Q ss_pred EEEEeeCC---CeEEEEECCCCc--eeEEEcc---CCCCeeeeeEeCCCCeEEee
Q 015371 326 YIYTGSSD---NSVYIYDLVSGA--QVAKLDF---HNAPVRDCCWHPIYPMLISS 372 (408)
Q Consensus 326 ~l~~~~~d---g~i~vwd~~~~~--~~~~~~~---~~~~v~~~~~~~~~~~l~s~ 372 (408)
.|+..+.+ +.+++|++.... ....+.. |...+..++|+|++++|+..
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 99766554 789999986432 3344443 56778999999999977654
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=1.4e-28 Score=229.88 Aligned_cols=291 Identities=11% Similarity=0.075 Sum_probs=200.4
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---------cEEEE
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---------AIVNI 111 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~ 111 (408)
..+.+++|+|||+++++ +.||+|++||+.+++..............|.+++|+|||++|++++.+ +.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 45788999999998877 789999999999886544332211111148899999999999998764 78999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc-----
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV----- 186 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v----- 186 (408)
||+.+++...+.... .+...+..++|+|||+.|+.++. +.|++||+.+++.......+...+
T Consensus 96 ~d~~~~~~~~l~~~~------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 96 SKIPHGDPQSLDPPE------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp EESSSCCCEECCCTT------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred EECCCCceEeccCCc------------cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence 999887653222211 12224788999999999999875 899999999888766555444433
Q ss_pred -------------eEEEEecCCCCEEEEecCCC----------------------------------eEEEEeccccccC
Q 015371 187 -------------NTVCFADETGHLIFSGSDDS----------------------------------LCKVWDRRCFISK 219 (408)
Q Consensus 187 -------------~~l~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~ 219 (408)
.+++|+ |+++.|++++.|+ .|++||+. .
T Consensus 163 ~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~----~ 237 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN----G 237 (723)
T ss_dssp CCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS----S
T ss_pred cceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC----C
Confidence 789999 8999998887553 78999974 3
Q ss_pred Cccceeeecc------cCCeEEEEecCCCCeEEEeec----CCeEEEEeCCCCcCccccccccccccccceeecccccce
Q 015371 220 GRANGVLMGH------LEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 289 (408)
Q Consensus 220 ~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
++....+..+ ...+..++|+|||+++++... +..|++||+.+..
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-------------------------- 291 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-------------------------- 291 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--------------------------
T ss_pred CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--------------------------
Confidence 3333444433 567899999999998877653 3579999987732
Q ss_pred eeccCCCcceeeeecc-cceeeEEEEEeeccccCCCcEEEE--eeCCC------eEEEEE-CCCCc--eeEEEccCCCCe
Q 015371 290 RLKHPHDQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIYT--GSSDN------SVYIYD-LVSGA--QVAKLDFHNAPV 357 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg------~i~vwd-~~~~~--~~~~~~~~~~~v 357 (408)
....+..+ ..... .....++|||||+.|+. +..++ .|++|| ..+++ +...+..+...+
T Consensus 292 --------~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 292 --------CTKKHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp --------EEEEEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred --------ceEEEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 12221111 10000 00125679999997775 44566 577788 34444 145554444445
Q ss_pred ee-eeEeCCCCeEEeecCC---CcEEEEeeCCC
Q 015371 358 RD-CCWHPIYPMLISSSWD---CNIVRWEIPGI 386 (408)
Q Consensus 358 ~~-~~~~~~~~~l~s~~~d---g~v~iw~~~~~ 386 (408)
.. ++|+||++.|+..+.+ +.+++|++...
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 54 6999999988765554 78999998753
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1.6e-27 Score=198.29 Aligned_cols=257 Identities=14% Similarity=0.139 Sum_probs=187.4
Q ss_pred EEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCC-Cceeeeeeeeeeeeeeeec
Q 015371 57 AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTIHKGLDFSA 135 (408)
Q Consensus 57 t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~ 135 (408)
.++.|+.|++||+.+++... . ..|...|.+++|+|++++|++++ ++.|++||+.+ ++...... .+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~---~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~------- 82 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-V---WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GF------- 82 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-E---EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC--TT-------
T ss_pred CCCcceeEEEEeCCCCceee-e---ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc--cc-------
Confidence 34678999999998875442 2 22455799999999999999886 78999999988 65432221 11
Q ss_pred CCCCCccceEEEEEcCCCCEEEEEec----CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCCeEEE
Q 015371 136 DGDEDEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCKV 210 (408)
Q Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~i 210 (408)
+...+.+++|+|++++|++++. ...|..++..+++ ...+..+ ..+..++|+ |+++.|+ +++.++.+++
T Consensus 83 ----~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~s-pdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 83 ----ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWS-PDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp ----CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEEC-TTSSEEEEEEEETTEEEE
T ss_pred ----ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEEC-CCCCEEEEEECCCCceEE
Confidence 1125888999999999999983 2456666666555 3344433 348999999 7777666 7888999999
Q ss_pred EeccccccCCccceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCccccccccccccccceeecccccce
Q 015371 211 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 289 (408)
Q Consensus 211 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
|+++. .......+..+...+.++.|+|++++|+.++ .++.+++|+++..
T Consensus 156 ~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--------------------------- 205 (297)
T 2ojh_A 156 YSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--------------------------- 205 (297)
T ss_dssp EEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT---------------------------
T ss_pred EEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC---------------------------
Confidence 99751 2334456667888999999999999887766 5889999987631
Q ss_pred eeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-----------CeEEEEECCCCce--eEEEccCCCC
Q 015371 290 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-----------NSVYIYDLVSGAQ--VAKLDFHNAP 356 (408)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~--~~~~~~~~~~ 356 (408)
......+..+. ..+..++|+|++++|++++.+ +.|++||+.+++. +..+..|...
T Consensus 206 ------~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 273 (297)
T 2ojh_A 206 ------GSSVERITDSA------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT 273 (297)
T ss_dssp ------SSCEEECCCCS------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT
T ss_pred ------CCCcEEEecCC------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc
Confidence 12233333333 234456789999999988876 5699999988865 4444578889
Q ss_pred eeeeeEeCCCCeEEeecCCC
Q 015371 357 VRDCCWHPIYPMLISSSWDC 376 (408)
Q Consensus 357 v~~~~~~~~~~~l~s~~~dg 376 (408)
+.+++|+|++++|++++.|.
T Consensus 274 ~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCSCCBCTTSSEEEEEEECC
T ss_pred cccceECCCCCEEEEEEecc
Confidence 99999999999888877653
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=4e-27 Score=219.47 Aligned_cols=325 Identities=10% Similarity=0.063 Sum_probs=213.9
Q ss_pred eeEecCCccEEEeecCceEEEEEE--ecCc--eeeeccc-----------------CceeEEEEcCCCCeEEEEeCCCcE
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLP--VNGP--WKVDGMN-----------------SRVYTSQFSNDGSFFVAASQESNI 64 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~--~~~~--~~l~~h~-----------------~~v~~~~~s~~~~~l~t~~~dg~i 64 (408)
.+.|+ +++++...+.. + .+. .... ..+..|. ..|.+++|||| ++++.+. ++.|
T Consensus 30 ~~~w~-g~~~~~~~~~~-i--~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i 103 (706)
T 2z3z_A 30 GLQWM-GDNYVFIEGDD-L--VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGL 103 (706)
T ss_dssp TCEEE-TTEEEEEETTE-E--EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEE
T ss_pred CCcCc-CCeEEEEeCCc-E--EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEE
Confidence 36777 55666655444 3 333 2333 4455544 46999999999 6666554 5899
Q ss_pred EEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCC-----Cceeeeeeeeeeeeeeee-cCCC
Q 015371 65 KVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-----SARESLANVTIHKGLDFS-ADGD 138 (408)
Q Consensus 65 ~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-----~~~~~~~~~~~~~~~~~~-~~~~ 138 (408)
++||+.+++.... .. +...+.+++|+|||+.|+++ .++.|++|++.+ ++.......... ..... ...+
T Consensus 104 ~~~d~~~~~~~~l-~~---~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~-~~~~g~~~~~ 177 (706)
T 2z3z_A 104 VGFDMLARKVTYL-FD---TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE-TLVYGQAVHQ 177 (706)
T ss_dssp EEEETTTTEEEEE-EC---CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT-TEEESSCCGG
T ss_pred EEEECCCCceEEc-cC---CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC-CeEcccchhh
Confidence 9999988754332 22 22357889999999999985 689999999987 654322211110 00000 0000
Q ss_pred CCccceEEEEEcCCCCEEEEEe---------------------------------cCCeEEEEECCCCcceeee--cCcC
Q 015371 139 EDEFGIFSVKFSTDGQELVAAG---------------------------------SDNFIYVYDLQANKCSLRI--PAHK 183 (408)
Q Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~--~~~~ 183 (408)
++...+.++.|+|||++|++++ .+..|++||+.+++..... ..|.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 1112357899999999999987 3468999999988755443 2466
Q ss_pred CCceEEEEecCCCCEEEEecCCC-----eEEEEeccccccCCccceeee-c-ccC---CeEEEEecC--CCCeEEEeecC
Q 015371 184 SDVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKGRANGVLM-G-HLE---GITFIDSRR--DGRYFISNGKD 251 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~-~~~---~i~~~~~~~--~~~~l~~~~~d 251 (408)
..+.+++|+ |+++.|++++.++ .|.+||+. .++....+. . +.. .+..+.|+| +|+++++++.|
T Consensus 258 ~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 258 KFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred eeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 789999999 8999998887775 89999975 342222222 1 222 246789999 99999999999
Q ss_pred CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee
Q 015371 252 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 331 (408)
Q Consensus 252 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 331 (408)
+.+++|++... +..+..+..+..... ..++|+|+++.|+.++
T Consensus 333 g~~~l~~~~~~---------------------------------~~~~~~l~~~~~~v~-----~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 333 GWNHLYLYDTT---------------------------------GRLIRQVTKGEWEVT-----NFAGFDPKGTRLYFES 374 (706)
T ss_dssp SSCEEEEEETT---------------------------------SCEEEECCCSSSCEE-----EEEEECTTSSEEEEEE
T ss_pred CccEEEEEECC---------------------------------CCEEEecCCCCeEEE-----eeeEEcCCCCEEEEEe
Confidence 99999987621 122333333321111 1146889998876655
Q ss_pred C-CC----eEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCC----CcEEEEeeCCCC
Q 015371 332 S-DN----SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD----CNIVRWEIPGIG 387 (408)
Q Consensus 332 ~-dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~~~~~~ 387 (408)
. ++ .|+.||+.+++ ...+. |...+.+++|+||+++|+.++.+ +.|++||+.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 4 44 67888887765 34444 67779999999999988766433 569999998764
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=2.7e-26 Score=194.07 Aligned_cols=281 Identities=15% Similarity=0.166 Sum_probs=189.7
Q ss_pred EEEcCCCCe-EEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec-CcEEEEEECCCCceeeee
Q 015371 46 SQFSNDGSF-FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLA 123 (408)
Q Consensus 46 ~~~s~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~ 123 (408)
..|.+++++ +++++.++.|++||..+++........ ...+ .++|+|+++++++++. ++.|.+||..+++.. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG---YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC---CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EE
Confidence 346666555 667788999999999988665544322 2245 9999999997776665 889999999887641 11
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC---eEEEEECCCCcceeeecCcCCCceEEEEecCCCC-EE
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH-LI 199 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l 199 (408)
....... +..+++|+|++++++++..++ .|.+||+.+++.+..+.. .....+++|+ |+++ ++
T Consensus 78 ~~~~~~~------------~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~~l~ 143 (331)
T 3u4y_A 78 AIQEGQS------------SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGNGLI 143 (331)
T ss_dssp EEEECSS------------CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSSCEE
T ss_pred ecccCCC------------CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCCEEE
Confidence 2222221 344499999999999655553 899999999988877764 4456999999 7776 45
Q ss_pred EEecCCCe-EEEEeccccccCCccc---eeeecccCCeEEEEecCCCCeEEE-eecCCeEEEEeCCCCcCcccccccccc
Q 015371 200 FSGSDDSL-CKVWDRRCFISKGRAN---GVLMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 200 ~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
++...++. |.+|++.. .+... ............++|+|+|+++++ +..++.|.+||+.+....
T Consensus 144 ~~~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~--------- 211 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI--------- 211 (331)
T ss_dssp EEEETTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---------
T ss_pred EEecCCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---------
Confidence 55566678 99999752 11111 122234456889999999996554 446889999999863210
Q ss_pred ccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCCeEEEEECCCCce--eEEEc
Q 015371 275 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQ--VAKLD 351 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~ 351 (408)
+.+..+.... ....++|+|||+++++++ .++.|.+||+.+++. +..+.
T Consensus 212 ----------------------~~~~~~~~~~-------~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 212 ----------------------TLLNAVGTNN-------LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp ----------------------EEEEEEECSS-------CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred ----------------------ceeeeccCCC-------CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 0023333221 123457899999776654 578899999998876 44443
Q ss_pred cC----CCC---eeeeeEeCCCCeEEee-cCCCcEEEEeeCCC
Q 015371 352 FH----NAP---VRDCCWHPIYPMLISS-SWDCNIVRWEIPGI 386 (408)
Q Consensus 352 ~~----~~~---v~~~~~~~~~~~l~s~-~~dg~v~iw~~~~~ 386 (408)
.+ ... ...++|+|++++|+++ ..++.|.+||+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 22 222 3458999999977554 55679999999764
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=4.6e-26 Score=194.43 Aligned_cols=281 Identities=11% Similarity=0.040 Sum_probs=206.3
Q ss_pred cccCceeEEEEcCCCCeEEEEeC-------CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEE
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQ-------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIV 109 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 109 (408)
.....+..++|+|+++++++++. ++.|.+||..+++........ ..+..++|+|++++++++ ..++.|
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCCEE
Confidence 44567889999999999888774 568999999988665544322 246779999999966655 457899
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe--cCCeEEEEECCCCcceeeecCcCCCce
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
.+||..+++............ . .......+.+++|+|+++++++++ .++.|.+||..+++....+..+...+.
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKR--T---EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST 188 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCC--C---SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred EEEeCCCCeeEEEEecCCCcc--c---cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence 999998877543322211000 0 000111378899999999888876 378999999999998888876666789
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec----ccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKM 262 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 262 (408)
+++|+ ++++.+++++.++.|.+||+. .++....+.. +...+..++|+|+++++++++. ++.|.+||+.+.
T Consensus 189 ~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 189 GLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred eEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 99999 889999999999999999975 5555555443 4556888999999997766655 589999999773
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCCeEEEEEC
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDL 341 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~vwd~ 341 (408)
+.+..+..... ..++|+|+++++++++ .++.|.+||.
T Consensus 264 ----------------------------------~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 264 ----------------------------------NILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp ----------------------------------CEEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ----------------------------------cEEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 22233322211 2346788899666555 6899999999
Q ss_pred CCCceeEEEccCCCCeeeeeEeCCCCeEEeecCC
Q 015371 342 VSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 375 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (408)
.+++.+..+..+ ..+.+++|+|++++|+.+..+
T Consensus 302 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 302 KSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 999988888754 468999999999977666554
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=3.6e-26 Score=213.01 Aligned_cols=316 Identities=14% Similarity=0.070 Sum_probs=205.8
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec--CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC-----CeeEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-----NWKIQ 76 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-----~~~~~ 76 (408)
..+++||||+.++++.. .....++.. ....+..+...+.+++|||||++||++ .++.|++|++.+ ++...
T Consensus 84 v~~~~~spd~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQ--GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp CEEEEETTTTEEEEEET--TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE
T ss_pred ceeEEECCCCeEEEEEC--CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE
Confidence 56899999955555543 233344433 344566788889999999999999995 678999999987 64433
Q ss_pred Eecccccc-----------eeeEEEEEeCCCCceEEEee---------------------------------cCcEEEEE
Q 015371 77 KDIETKAL-----------RWTITDTSLSPDQRFLVYAS---------------------------------ICAIVNIV 112 (408)
Q Consensus 77 ~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~~w 112 (408)
........ ...+.+++|+|||++|++++ .+..|.+|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 21111110 01147899999999999987 44689999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC-----eEEEEECCCCcceeeec-C-cC--
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRIP-A-HK-- 183 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~-~~-- 183 (408)
|+.+++....... ..+...+.+++|+|||++|++++.++ .|++||+.+++....+. . +.
T Consensus 241 d~~~~~~~~~~~~------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 241 HLATGKTVYLQTG------------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp ETTTTEEEECCCC------------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred ECCCCceEeeccC------------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 9988765332211 12233689999999999999987775 89999999884333332 1 22
Q ss_pred -CCceEEEEecC--CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEE-EEecCCCCeEEEeecC-C----eE
Q 015371 184 -SDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF-IDSRRDGRYFISNGKD-Q----TT 254 (408)
Q Consensus 184 -~~v~~l~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-~----~i 254 (408)
..+.+++|+ | +++++++++.|+.+++|+++ ..+.....+..+...+.. +.|+|+++.|+.++.+ + .|
T Consensus 309 ~~~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~---~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 VEPLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYD---TTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp CCCCSCCEEC-TTCSSEEEEEECTTSSCEEEEEE---TTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred ECccCCceee-cCCCCEEEEEEccCCccEEEEEE---CCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 234778999 7 88899999999999999874 245566677777777876 7999999987665544 3 56
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD- 333 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d- 333 (408)
..||+.+.. ...+. +. ..+..++|||||++++....+
T Consensus 385 ~~~d~~~~~-----------------------------------~~~l~-~~------~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 385 YCIDIKGGK-----------------------------------TKDLT-PE------SGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp EEEETTCCC-----------------------------------CEESC-CS------SSEEEEEECTTSSEEEEEEECS
T ss_pred EEEEcCCCC-----------------------------------ceecc-CC------CceEEEEECCCCCEEEEEecCC
Confidence 666665421 11111 11 112345789999988876543
Q ss_pred ---CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCC--cEEEEee
Q 015371 334 ---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC--NIVRWEI 383 (408)
Q Consensus 334 ---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~iw~~ 383 (408)
+.|++||+.+++ ...+. +...+....|.+.....+ .+.|| .+..|-.
T Consensus 423 ~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAMPEIRTGTI-MAADGQTPLYYKLT 474 (706)
T ss_dssp SCSCEEEEEESSSCE-EEEEE-CC------CCCCEEEEEE-ECTTSSSEEEEEEE
T ss_pred CCCcEEEEEECCCCe-Eeecc-ccchhhhcCCCCcEEEEE-EcCCCCEEEEEEEE
Confidence 569999998887 33333 334454444433322222 23344 4555543
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=2.3e-25 Score=189.27 Aligned_cols=277 Identities=11% Similarity=0.110 Sum_probs=180.6
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCC-CcEEEEEcC--CCeeEEEecccccceeeEEEEEeCCCCceEEEeec-CcEEEEE
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVD--KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIV 112 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w 112 (408)
..|...+.+++|+|+|++|++++.+ +.|.+|+++ ++... .......+. .+..++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee-eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 4577889999999999999988876 899999997 44321 111111112 6888999999998877664 8899999
Q ss_pred ECCCCcee-eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCC-Cccee----eecC-cCC
Q 015371 113 DVGSSARE-SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQA-NKCSL----RIPA-HKS 184 (408)
Q Consensus 113 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~ 184 (408)
|+..+... ....... ...+.+++|+|+++++++++ .++.|.+||+.+ ++... .+.. ...
T Consensus 112 d~~~~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEG-------------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EEETTEEEEEEEEECC-------------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred ECCCCccccccccccC-------------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 99533211 1111111 11488899999999888887 789999999987 54432 2222 345
Q ss_pred CceEEEEecCCCCEEE-EecCCCeEEEEeccccccCCccceeee----c--ccCCeEEEEecCCCCeEEE-eecCCeEEE
Q 015371 185 DVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLM----G--HLEGITFIDSRRDGRYFIS-NGKDQTTKL 256 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~~~~~l~~-~~~d~~i~i 256 (408)
.+..++|+ |++++++ ++..++.|.+||++............. + ....+..++|+|++++|++ ...++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899999 7787554 555899999999852111111122222 1 1235668999999987774 447899999
Q ss_pred EeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCCe
Q 015371 257 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNS 335 (408)
Q Consensus 257 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~ 335 (408)
||+...... ...+..+..+.. ...++|+|+|++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTETQ-------PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSSS-------CCCEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCCc-------cceEEECCCCCEEEEecCCCCe
Confidence 998731100 111222222211 23447889999888887 5799
Q ss_pred EEEEEC--CCCc--eeEEEccCCCCeeeeeEeCCCC
Q 015371 336 VYIYDL--VSGA--QVAKLDFHNAPVRDCCWHPIYP 367 (408)
Q Consensus 336 i~vwd~--~~~~--~~~~~~~~~~~v~~~~~~~~~~ 367 (408)
|.+|++ .+++ .+..+.. .....+++|.++.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 999954 4553 3444443 24566778877644
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=1e-25 Score=191.71 Aligned_cols=277 Identities=12% Similarity=0.048 Sum_probs=179.5
Q ss_pred CCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCCCCceEEEeec---CcEEEEEECCCCceeeeeeeeeeeeeeeecC
Q 015371 61 ESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTIHKGLDFSAD 136 (408)
Q Consensus 61 dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (408)
++.|.+|.++... .+.. .....+...+..++|+|+++ |++++. ++.|.+|++.+++.........+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~------ 86 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT------ 86 (347)
T ss_dssp CCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC------
T ss_pred CCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC------
Confidence 4568888876521 2221 11122234577899999999 665554 6899999997776544443322222
Q ss_pred CCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCC-Cc--ceeeecC---------cCCCceEEEEecCCCCEEEEec
Q 015371 137 GDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQA-NK--CSLRIPA---------HKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~--~~~~~~~---------~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
.+..++|+|+|++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+ |+++++++..
T Consensus 87 ------~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~ 159 (347)
T 3hfq_A 87 ------PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDL 159 (347)
T ss_dssp ------CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEET
T ss_pred ------CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeC
Confidence 578899999999998887 679999999963 32 2222221 12347889999 7777777777
Q ss_pred CCCeEEEEeccccccCCccc--eeeec-ccCCeEEEEecCCCCeEEE-eecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 204 DDSLCKVWDRRCFISKGRAN--GVLMG-HLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
.++.|.+||+.. .+... ..+.. .......++|+|+|+++++ ...++.+.+|++.......
T Consensus 160 ~~~~v~~~~~~~---~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------- 223 (347)
T 3hfq_A 160 GSDKVYVYNVSD---AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------- 223 (347)
T ss_dssp TTTEEEEEEECT---TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-------------
T ss_pred CCCEEEEEEECC---CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-------------
Confidence 889999999751 22221 11222 2336788999999996655 5568899999987411000
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEE-EeeCCCeEEEEECCC---CceeEEEccCCC
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVS---GAQVAKLDFHNA 355 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~vwd~~~---~~~~~~~~~~~~ 355 (408)
..+..+...............++|+|||++|+ +...++.|.+|++.. .+.+..+..+..
T Consensus 224 -----------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~ 286 (347)
T 3hfq_A 224 -----------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286 (347)
T ss_dssp -----------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS
T ss_pred -----------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC
Confidence 00111111110000001234557899999875 555689999999972 355666666677
Q ss_pred CeeeeeEeCCCCeEEeecC-CCcEEEEeeCC
Q 015371 356 PVRDCCWHPIYPMLISSSW-DCNIVRWEIPG 385 (408)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 385 (408)
.+..++|+|++++|++++. ++.|.+|++..
T Consensus 287 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 287 FPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 7899999999998877765 48999997653
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=8.4e-26 Score=191.52 Aligned_cols=275 Identities=12% Similarity=0.080 Sum_probs=193.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCceeeeeeeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTIHKGL 131 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (408)
++|++++.++.|++||..+++.+........ ...+..++|+|+++.++ ++..++.|.+||+.+++...........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--
Confidence 4789999999999999998866654432220 00267799999998765 4556789999999887654322221100
Q ss_pred eeecCCCCCccceEEEEEcCCCCEEEEEe------------cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE
Q 015371 132 DFSADGDEDEFGIFSVKFSTDGQELVAAG------------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 199 (408)
.+...+..++|+|+++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+ +++++|
T Consensus 79 -------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l 149 (337)
T 1pby_B 79 -------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSKL 149 (337)
T ss_dssp -------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSCE
T ss_pred -------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCCEE
Confidence 0011366899999999998886 579999999999887777664 4568899999 888877
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC------------------------eEE
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ------------------------TTK 255 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------~i~ 255 (408)
+++ ++.|.+||+. .++....+..+.. ...+.|+|+++.++..+.++ .|.
T Consensus 150 ~~~--~~~i~~~d~~----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 150 YGL--GRDLHVMDPE----AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp EEE--SSSEEEEETT----TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EEe--CCeEEEEECC----CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 777 6889999975 4555544443331 11237899988776555433 346
Q ss_pred EEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCe
Q 015371 256 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 335 (408)
Q Consensus 256 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 335 (408)
+||+.+.... ...+..+. .....++|+|++++++++ ++.
T Consensus 223 ~~d~~~~~~~---------------------------------~~~~~~~~------~~~~~~~~s~dg~~l~~~--~~~ 261 (337)
T 1pby_B 223 TMDLETGEMA---------------------------------MREVRIMD------VFYFSTAVNPAKTRAFGA--YNV 261 (337)
T ss_dssp EEETTTCCEE---------------------------------EEEEEECS------SCEEEEEECTTSSEEEEE--ESE
T ss_pred EEeCCCCCce---------------------------------EeecCCCC------CceeeEEECCCCCEEEEe--CCe
Confidence 6776652110 01111111 122345788999999988 789
Q ss_pred EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 336 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||+.+++.
T Consensus 262 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred EEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 999999999888887643 5678999999999998889999999999987654
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=3.7e-26 Score=207.92 Aligned_cols=277 Identities=11% Similarity=0.007 Sum_probs=190.7
Q ss_pred cCceeEEEEcCCCCeEEEEeC-CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec---CcEEEEEECC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVG 115 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~ 115 (408)
..+|++++|+|||++||+++. ||+++||+++++... ... ..+...+..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt--~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLN--REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECC--SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eee--cccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 567999999999999999887 999999999766433 222 222247899999999 77776664 4455665553
Q ss_pred C--CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCE-EEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 116 S--SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQE-LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
. ..... .+.... .+...+|+|+++. +++.+.++.+.+||+.+++....... .. .+++|+
T Consensus 97 ~~~~g~~~--~l~~~~-------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~s 158 (582)
T 3o4h_A 97 TSRPGEEQ--RLEAVK-------------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSD 158 (582)
T ss_dssp TTSTTCCE--ECTTSC-------------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEE
T ss_pred ccCCCccc--cccCCC-------------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEEC
Confidence 3 22111 111111 2445678888764 33333445566999998876554433 33 899999
Q ss_pred cCCCCEEEEecCC----CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC--eEEEEeCCCCcCcc
Q 015371 193 DETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRKMSSNT 266 (408)
Q Consensus 193 ~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~ 266 (408)
|++++|++++.+ +.|++||+. .++ ...+..|...+..++|+|||+.|+++..++ .|++||+.+...
T Consensus 159 -pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-- 230 (582)
T 3o4h_A 159 -IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-- 230 (582)
T ss_dssp -EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE--
T ss_pred -CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE--
Confidence 899999988877 789999964 333 446778888899999999999999888888 899999987321
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE--EEEeeccccCCCcEEEEeeCCCeEEEEECCCC
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI--RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 344 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 344 (408)
. .+..+....... .....+.|+|||.++++++.||.+++|++ +
T Consensus 231 --------------------------------~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g 275 (582)
T 3o4h_A 231 --------------------------------E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G 275 (582)
T ss_dssp --------------------------------E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T
T ss_pred --------------------------------E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C
Confidence 1 222222110000 00112238999999999999999999999 6
Q ss_pred ceeEEEccCCCCeeeeeEeCCCCeEEeecCCC---cEEEEeeCC
Q 015371 345 AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC---NIVRWEIPG 385 (408)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~~~~ 385 (408)
+... .+.+.|.+++|+ +++++++++.+. .+++|+..+
T Consensus 276 ~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 276 ERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred Ceec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 5544 345678999999 999888887764 466666543
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=209.57 Aligned_cols=326 Identities=9% Similarity=-0.008 Sum_probs=206.7
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec--Cceeeec-ccC---ceeEEEEcCCCCeEEEEeC---------CCcEEEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN--GPWKVDG-MNS---RVYTSQFSNDGSFFVAASQ---------ESNIKVYN 68 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~l~~-h~~---~v~~~~~s~~~~~l~t~~~---------dg~i~iw~ 68 (408)
...++|||||++++.+... ....++.. ....+.. |.. .|.+++|||||++||+++. ++.|++||
T Consensus 18 ~~~~~~s~dg~~~~~~~d~-~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 18 TFFPNWISGQEYLHQSADN-NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCCEESSSSEEEEECTTS-CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCccEECCCCeEEEEcCCC-CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 3578999999888776533 34444433 2334443 433 3999999999999999876 78999999
Q ss_pred cCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCc-------
Q 015371 69 VDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDE------- 141 (408)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (408)
+.+++.+... ... ..+..++|||||+.|+++. ++.|++|++.+++...+.. ..+....+. ++.
T Consensus 97 ~~~g~~~~~~-~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~-~~~~~~v~~----g~~~~v~~ee 166 (719)
T 1z68_A 97 LSNGEFVRGN-ELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF-NGRENKIFN----GIPDWVYEEE 166 (719)
T ss_dssp TTTTEECCSS-CCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC-CCBTTTEEE----SSCCHHHHHH
T ss_pred CCCCccccce-ecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec-CCCcCCeEc----ccccceeeee
Confidence 9988542101 111 2588899999999999886 7899999998876533221 111100000 000
Q ss_pred --cceEEEEEcCCCCEEEEEecCC----------------------------------eEEEEECCCCcce--------e
Q 015371 142 --FGIFSVKFSTDGQELVAAGSDN----------------------------------FIYVYDLQANKCS--------L 177 (408)
Q Consensus 142 --~~i~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--------~ 177 (408)
....+++|+|||++|++++.|. .|++||+.+++.. .
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 0125899999999999987652 7899999988753 2
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCC----CeEEEEe----ccccccCCccceee----ecccCCeE-----EEEecC
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDD----SLCKVWD----RRCFISKGRANGVL----MGHLEGIT-----FIDSRR 240 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~ 240 (408)
.+.+|...+..++|+ |+++++++.... ..|.+|| +. .++....+ .+|...+. .+.|+|
T Consensus 247 ~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 247 MIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp HHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCC----CCceEEEEecccccCCceEccccCCccEECC
Confidence 234577889999999 678777764432 2488888 54 23333333 35666666 789999
Q ss_pred CCCeEEE--eecCC--eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 241 DGRYFIS--NGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 241 ~~~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
||+.|+. ...+| .|.+||+.... ...+..+... ..
T Consensus 322 dg~~l~~~~~~~~g~~~l~~~~~~~~~-----------------------------------~~~lt~~~~~--v~---- 360 (719)
T 1z68_A 322 DAISYYKIFSDKDGYKHIHYIKDTVEN-----------------------------------AIQITSGKWE--AI---- 360 (719)
T ss_dssp TSSCEEEEEECTTSCEEEEEESSCSTT-----------------------------------CEECSCSSSC--EE----
T ss_pred CCCeEEEEEEccCCceEEEEEECCCCc-----------------------------------eEecccCceE--EE----
Confidence 9996654 44555 46666765421 1222222111 11
Q ss_pred eccccCCCcEEEEeeCC-----CeEEEEECCC--Cc-eeEEEc----cCCCCeeeeeEeCCCCeEEe-ecCC--CcEEEE
Q 015371 317 SPEYSTAQKYIYTGSSD-----NSVYIYDLVS--GA-QVAKLD----FHNAPVRDCCWHPIYPMLIS-SSWD--CNIVRW 381 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~d-----g~i~vwd~~~--~~-~~~~~~----~~~~~v~~~~~~~~~~~l~s-~~~d--g~v~iw 381 (408)
.+.++ +++.|+..+.+ +.+++|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+|
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~ 439 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH 439 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence 11223 46666655544 7788887754 32 233333 25667888999999997664 4333 568899
Q ss_pred eeCCCC
Q 015371 382 EIPGIG 387 (408)
Q Consensus 382 ~~~~~~ 387 (408)
++.+++
T Consensus 440 d~~~g~ 445 (719)
T 1z68_A 440 DGRTDQ 445 (719)
T ss_dssp CSSSCC
T ss_pred ECCCCC
Confidence 987654
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3.2e-24 Score=178.25 Aligned_cols=252 Identities=15% Similarity=0.150 Sum_probs=177.1
Q ss_pred CceEEEEEEec--CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC-CeeEEEecccccceeeEEEEEeCCCC
Q 015371 21 CHVLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQ 97 (408)
Q Consensus 21 ~~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 97 (408)
.+.....+... ....+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++..... ...+...+.+++|+|++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD--TGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC--CTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec--cccccccccceEECCCC
Confidence 34444445433 2345678999999999999999999987 77999999988 6443322 12223468899999999
Q ss_pred ceEEEee--cCcEEEEE--ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE-EEecCCeEEEEEC--
Q 015371 98 RFLVYAS--ICAIVNIV--DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDNFIYVYDL-- 170 (408)
Q Consensus 98 ~~l~~~~--~dg~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~-- 170 (408)
++|++++ .++...+| +..++.... +... ..+..++|+|++++|+ ++..++.+.+|++
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRL---MTKN-------------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEE---CCSS-------------SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEE---eecC-------------CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 9999988 33444444 544443211 1111 1378899999999887 6778898889885
Q ss_pred CCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee
Q 015371 171 QANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
.++ ....+..+...+.+++|+ ++++.|+.++ .++.+++|+++ ........+..|...+..+.|+|++++|++++
T Consensus 161 ~~~-~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 161 DSG-VETRLTHGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVR---VDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp TTC-CEEECCCSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEE---TTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred CCC-cceEcccCCCccccceEC-CCCCEEEEEecCCCCccEEEEC---CCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 333 345566678899999999 7888776655 58999999975 23455566777788899999999999998887
Q ss_pred cC-----------CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeec
Q 015371 250 KD-----------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 318 (408)
Q Consensus 250 ~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
.+ +.|.+||+.+... ..+..+.++. ..+..+
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~~~~~~------~~~~~~ 277 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNV--------------------------------ETLFDLFGGQ------GTMNSP 277 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSC--------------------------------EEEEEEEEST------TTSCSC
T ss_pred cCCCCCcccccCceEEEEEecCCCCc--------------------------------eeeeccCCCC------cccccc
Confidence 75 5699999876321 1122222332 123456
Q ss_pred cccCCCcEEEEeeCCC
Q 015371 319 EYSTAQKYIYTGSSDN 334 (408)
Q Consensus 319 ~~s~~~~~l~~~~~dg 334 (408)
+|+|++++|++++.+.
T Consensus 278 ~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 278 NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CBCTTSSEEEEEEECC
T ss_pred eECCCCCEEEEEEecc
Confidence 8999999998887653
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=6e-24 Score=181.00 Aligned_cols=283 Identities=14% Similarity=0.108 Sum_probs=181.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEE-eecCcEEEEEECCCCceeeee
Q 015371 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY-ASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~w~~~~~~~~~~~ 123 (408)
.+++++++.++++++.+++|++||..+++......... ...+..++|+|+++++++ ...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45788899999999999999999999886655443221 113678999999986654 456899999999887654322
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC------------CeEEEEECCCCccee---eecCcCCCceE
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------------NFIYVYDLQANKCSL---RIPAHKSDVNT 188 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~---~~~~~~~~v~~ 188 (408)
...... ......+..++|+|+|+++++++.+ +.|.+||+.+++... .+. +...+.+
T Consensus 82 ~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 82 NLSSVP--------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL 152 (349)
T ss_dssp ESCCST--------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred Eccccc--------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccc
Confidence 221100 0001137789999999999998865 899999998855433 333 3446899
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC------------------------CeEEEEecCCCCe
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE------------------------GITFIDSRRDGRY 244 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~ 244 (408)
++|+ ++++ +++++. .|.+||+. .++....+..+.. ....+.+++++..
T Consensus 153 ~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 153 MRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp EEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred eeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 9999 7888 555543 49999975 4444444432210 2233455544321
Q ss_pred EEEeecCC-eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-
Q 015371 245 FISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST- 322 (408)
Q Consensus 245 l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 322 (408)
........ .+..+|..+.. +..+.... ........+++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~----~~~~~~~~~~sp~ 265 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGK-----------------------------------THTQEFAD----LTELYFTGLRSPK 265 (349)
T ss_dssp --CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEE----CSSCEEEEEECSS
T ss_pred CccccccceeEEEEeccCCc-----------------------------------EEeccccc----CCCcceeeEecCC
Confidence 11100011 11123333311 11110000 001234457889
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+.
T Consensus 266 dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 266 DPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp CTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99999988 88999999999998888764 34578999999999888888899999999987543
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.94 E-value=3.5e-23 Score=177.00 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=180.4
Q ss_pred CCCCeEEEEe----CCCcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeecC----cEEEEEECCC--Cc
Q 015371 50 NDGSFFVAAS----QESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGS--SA 118 (408)
Q Consensus 50 ~~~~~l~t~~----~dg~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~--~~ 118 (408)
++..++++|+ .++.|.+|.++.. ..+...... +...+..++|+|++++|++++.+ +.+.+|++.. ++
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 3445566664 3568999987542 122221111 34467789999999999998875 7999999876 33
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeec------C--------cC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIP------A--------HK 183 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~------~--------~~ 183 (408)
........... .....+++ ++++|++++ .++.|.+|++.....+..+. + +.
T Consensus 89 ~~~~~~~~~~~------------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 89 LHLLNTQKTMG------------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp EEEEEEEECSS------------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred EEEeeEeccCC------------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 33332222111 13667777 788777776 47899999997543332221 1 12
Q ss_pred CCceEEEEecCCCCEEE-EecCCCeEEEEeccccccCC----c-c------ceeeecccCCeEEEEecCCCCeEEEee-c
Q 015371 184 SDVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKG----R-A------NGVLMGHLEGITFIDSRRDGRYFISNG-K 250 (408)
Q Consensus 184 ~~v~~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~----~-~------~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 250 (408)
..+.+++|+ |++++++ +...++.|.+|++... .. + . ......+......++|+|+|+++++++ .
T Consensus 155 ~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 155 PHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPN--ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp CCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred CcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCC--CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 345789999 7887554 4555889999997521 11 1 1 112233455678999999999887776 5
Q ss_pred CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe
Q 015371 251 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 330 (408)
Q Consensus 251 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 330 (408)
++.|.+||+.+... ..+..+....... .....++|+|||++|+++
T Consensus 232 ~~~v~v~~~~~g~~--------------------------------~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 232 GGTVIAFRYADGML--------------------------------DEIQTVAADTVNA---QGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp TCEEEEEEEETTEE--------------------------------EEEEEEESCSSCC---CCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEecCCce--------------------------------EEeEEEecCCCCC---CCcccEEECCCCCEEEEE
Confidence 89999999875211 0111111111000 111345789999998776
Q ss_pred eCC--CeEEEEECC--CCc--eeEEEccCCCCeeeeeEeCCCCeEEeec-CCCcEEEEeeCC
Q 015371 331 SSD--NSVYIYDLV--SGA--QVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPG 385 (408)
Q Consensus 331 ~~d--g~i~vwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 385 (408)
..+ +.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++.|.+|++..
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 654 899999985 444 4444544 55788999999999888776 678999987753
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.94 E-value=3.4e-24 Score=185.26 Aligned_cols=292 Identities=13% Similarity=0.089 Sum_probs=191.1
Q ss_pred eeeecccCceeE-----EEEcCCCCeEEEEeC-CCc--EEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec
Q 015371 34 WKVDGMNSRVYT-----SQFSNDGSFFVAASQ-ESN--IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI 105 (408)
Q Consensus 34 ~~l~~h~~~v~~-----~~~s~~~~~l~t~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 105 (408)
..+..|...... .+|||||++||.++. ++. |.+||+.+++.... . ..+...+..+.|+||++.|+.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-t--~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-T--EGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-C--CSSCBCSSSCEECTTSSEEEEEET
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-e--eCCCCCccceEEcCCCCEEEEEeC
Confidence 456666655555 899999999999887 663 88888887754432 2 223323446789999999999999
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE--EEEEcCCCCEEEEE----------------------ec
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF--SVKFSTDGQELVAA----------------------GS 161 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~----------------------~~ 161 (408)
++.+++||+.+++...+...... .+. ...+++++++++.. ..
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAE--------------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTT--------------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred CCeEEEEECCCCcceeeeechhh--------------cccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 99999999998876544332211 122 23458899887743 23
Q ss_pred CCeEEEEECCCCcceeeecCcCCCceEEEEecC-CCCEEEEecCC------CeEEEEeccccccCCccceeeeccc--CC
Q 015371 162 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDD------SLCKVWDRRCFISKGRANGVLMGHL--EG 232 (408)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~--~~ 232 (408)
+..|++||+.+++.. .+..+...+..++|+ | +++.|+....+ ..|.++|+. +.....+..+. ..
T Consensus 167 ~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGEST-VILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEE-EEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTTEE
T ss_pred cceEEEEECCCCceE-EeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCCcc
Confidence 478999999988654 444567788999999 7 88888776653 367777753 33334444444 35
Q ss_pred eEEEEecCCCCeEEEeec-CC----eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccc
Q 015371 233 ITFIDSRRDGRYFISNGK-DQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 307 (408)
Q Consensus 233 i~~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
+..+.|+|||+.|+..+. ++ .|++||+.+... ..+..+.++.
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------------------------~~l~~~~~~~- 286 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------------------------RQLTSMPACS- 286 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------------------------EEEEEECCEE-
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------------------------EEEEcCCCce-
Confidence 778899999998766443 22 399999987321 1111222100
Q ss_pred eeeEEEEEeeccccCCCcEEEEe---------eCCCeEEEEECCCCceeEEEccCCC-----------CeeeeeEeCCCC
Q 015371 308 LRTLIRCYFSPEYSTAQKYIYTG---------SSDNSVYIYDLVSGAQVAKLDFHNA-----------PVRDCCWHPIYP 367 (408)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~ 367 (408)
..........|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+|||+
T Consensus 287 --~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~ 363 (388)
T 3pe7_A 287 --HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDK 363 (388)
T ss_dssp --EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred --eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCC
Confidence 000001112578889988854 4466899999988765 44544554 578899999999
Q ss_pred eEEeec-CCCcEEEEeeCC
Q 015371 368 MLISSS-WDCNIVRWEIPG 385 (408)
Q Consensus 368 ~l~s~~-~dg~v~iw~~~~ 385 (408)
.|+.++ .+|...+|.++-
T Consensus 364 ~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 364 QILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEEEEECTTSSCEEEEEEC
T ss_pred EEEEEecCCCceeEEEEEC
Confidence 776554 577777877653
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=7.2e-23 Score=172.97 Aligned_cols=281 Identities=9% Similarity=0.070 Sum_probs=178.7
Q ss_pred EecCCccE-EEeecCceEEEEEEecCc---eeeecccCceeEEEEcCCCCeEEEEeC-CCcEEEEEcCCCee-EEEeccc
Q 015371 8 NYSGRGRF-SAADSCHVLSRYLPVNGP---WKVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWK-IQKDIET 81 (408)
Q Consensus 8 ~~s~dg~~-~~~~~~~~~~~~~~~~~~---~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~-~~~~~~~ 81 (408)
.|++++.+ .++.........++.... ..+..+...+ +++|+|+|++|++++. ++.|.+||+.++.. ......
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE- 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-
Confidence 34555543 445554555555654322 2344455566 9999999997776655 88999999988765 332222
Q ss_pred ccceeeEEEEEeCCCCceEEEeecCc---EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 82 KALRWTITDTSLSPDQRFLVYASICA---IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
+..+..+++|+|++++|+++..++ .|.+||+.+++.... +.... ...+++|+|+|+++++
T Consensus 82 --~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~-------------~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 82 --GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IPIPY-------------DAVGIAISPNGNGLIL 144 (331)
T ss_dssp --CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE--EECCT-------------TEEEEEECTTSSCEEE
T ss_pred --CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE--EECCC-------------CccceEECCCCCEEEE
Confidence 222344499999999999665553 999999988765332 22111 3689999999987766
Q ss_pred Eec-CCe-EEEEECCCCccee----eecCcCCCceEEEEecCCCCE-EEEecCCCeEEEEeccccccCCcc---ceeeec
Q 015371 159 AGS-DNF-IYVYDLQANKCSL----RIPAHKSDVNTVCFADETGHL-IFSGSDDSLCKVWDRRCFISKGRA---NGVLMG 228 (408)
Q Consensus 159 ~~~-dg~-i~i~d~~~~~~~~----~~~~~~~~v~~l~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 228 (408)
++. ++. |.+|++.....+. ........+..++|+ |++++ ++++..++.|.+||+. .++. +..+..
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT 219 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC
Confidence 644 477 9999987543321 112234567999999 78875 4555678999999975 4444 555543
Q ss_pred ccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccc
Q 015371 229 HLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 307 (408)
Q Consensus 229 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
...+..++|+|+|++++++. .++.|.+||+.+..... +..+.....
T Consensus 220 -~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~--------------------------------~~~~~~~~~ 266 (331)
T 3u4y_A 220 -NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF--------------------------------VKSFGHGLL 266 (331)
T ss_dssp -SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE--------------------------------EEEEECCCC
T ss_pred -CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee--------------------------------ecccccccc
Confidence 46678899999999766554 57789999998733210 111111100
Q ss_pred e-eeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCCCc
Q 015371 308 L-RTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGA 345 (408)
Q Consensus 308 ~-~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~ 345 (408)
. .........++|+||+++|++++. ++.|.+||+.+..
T Consensus 267 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 267 IDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 0 000000023478999998876655 5799999997544
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=203.25 Aligned_cols=287 Identities=13% Similarity=0.073 Sum_probs=188.6
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec---------CcEEEEEEC
Q 015371 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---------CAIVNIVDV 114 (408)
Q Consensus 44 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~w~~ 114 (408)
..++|+|||+++++ +.|++|++||+.+++..............+.+++|||||++|++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 37899999965555 46999999999988654332211110013889999999999998876 689999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCCC--------
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD-------- 185 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-------- 185 (408)
.+++......+. . .+..++|+|||+.|+.+. ++.|++||+.+++..... .++...
T Consensus 98 ~~g~~~~~~~l~---~------------~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~ 161 (719)
T 1z68_A 98 SNGEFVRGNELP---R------------PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDW 161 (719)
T ss_dssp TTTEECCSSCCC---S------------SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCH
T ss_pred CCCccccceecC---c------------ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccc
Confidence 988651111111 1 478899999999999885 789999999888765432 222222
Q ss_pred ---------ceEEEEecCCCCEEEEecCCC----------------------------------eEEEEeccccccCCcc
Q 015371 186 ---------VNTVCFADETGHLIFSGSDDS----------------------------------LCKVWDRRCFISKGRA 222 (408)
Q Consensus 186 ---------v~~l~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~ 222 (408)
..+++|+ |+++.|++++.|. .|++||+. .+..
T Consensus 162 v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~----~~~~ 236 (719)
T 1z68_A 162 VYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT----YPAY 236 (719)
T ss_dssp HHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----CHHH
T ss_pred eeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----CCCc
Confidence 2589999 8999999887652 78899975 2222
Q ss_pred c--------eeeecccCCeEEEEecCCCCeEEEeecC----CeEEEEe----CCCCcCccccccccccccccceeecccc
Q 015371 223 N--------GVLMGHLEGITFIDSRRDGRYFISNGKD----QTTKLWD----IRKMSSNTTDNSRLRDYDWDYRWMEYPS 286 (408)
Q Consensus 223 ~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (408)
. ..+.+|...+..++|+||++++++.... ..|.+|| +.+........
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~----------------- 299 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE----------------- 299 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-----------------
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-----------------
Confidence 1 1234577789999999998877664432 2488888 65532111000
Q ss_pred cceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE--eeCCC--eEEEEECCCCceeEEEccCCCCeeeeeE
Q 015371 287 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDN--SVYIYDLVSGAQVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (408)
.....+...... .....+.|+|||+.|+. ...+| .|++||+.+++ ...+..+...+..+.+
T Consensus 300 -------------~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~ 364 (719)
T 1z68_A 300 -------------HIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFR 364 (719)
T ss_dssp -------------EEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEE
T ss_pred -------------cccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEE
Confidence 000122211100 00014578999996654 44454 57888887766 4566666667888887
Q ss_pred eCCCCeEEeecC-----CCcEEEEeeCC
Q 015371 363 HPIYPMLISSSW-----DCNIVRWEIPG 385 (408)
Q Consensus 363 ~~~~~~l~s~~~-----dg~v~iw~~~~ 385 (408)
+ +++.|+..+. ++.+++|.+..
T Consensus 365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 365 V-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp E-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred E-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 7 7776665554 48899998865
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=3.7e-23 Score=179.95 Aligned_cols=240 Identities=12% Similarity=0.048 Sum_probs=160.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec------------------CceeeecccCceeEEEEcCCCCeEE----EEeCC
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN------------------GPWKVDGMNSRVYTSQFSNDGSFFV----AASQE 61 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~------------------~~~~l~~h~~~v~~~~~s~~~~~l~----t~~~d 61 (408)
...+++++++.++++++...+ .++... .+.....|.+.|.+++|+|+|++|| +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGL-QIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEE-EEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCEE-EEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 457899999988887766553 332211 1111224567899999999999999 78889
Q ss_pred CcEEEEEcCCC--------eeEEEecccccceeeEEEEEeCCC-CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeee
Q 015371 62 SNIKVYNVDKN--------WKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLD 132 (408)
Q Consensus 62 g~i~iw~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (408)
+.|+|||+.+. +.+.......+|...|.+++|+|+ +.+|++++.||.|++||+.++... .....
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~--~~~~~----- 190 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV--CATLP----- 190 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE--EEEEC-----
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce--eeccC-----
Confidence 99999998754 222233445567789999999998 889999999999999999877432 12222
Q ss_pred eecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCc-------CCCceEEEEecCCCCEEEE-ecC
Q 015371 133 FSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-------KSDVNTVCFADETGHLIFS-GSD 204 (408)
Q Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~~-~~~ 204 (408)
|...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|+ ++..++++ ...
T Consensus 191 -------~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~-~~~~~l~~~~~~ 261 (434)
T 2oit_A 191 -------STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI-GTYVFAIVYAAA 261 (434)
T ss_dssp -------GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE-ETTEEEEEEEET
T ss_pred -------CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe-cCceEEEEEccC
Confidence 23379999999999999999999999999998 5545544333 3378999999 56655543 333
Q ss_pred CC------eEEEEeccccccC-Cccceeee-------cccCCeEEEEecCCCCeEEEeec-CCeEEEEeCC
Q 015371 205 DS------LCKVWDRRCFISK-GRANGVLM-------GHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIR 260 (408)
Q Consensus 205 dg------~i~iwd~~~~~~~-~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~ 260 (408)
+| .+++|+++..... ......+. +...+...+...++.+++++++. .+.|.+....
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 43 3899998732111 11111111 12222233444466666555544 4556766643
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=3e-23 Score=175.75 Aligned_cols=248 Identities=12% Similarity=0.071 Sum_probs=176.2
Q ss_pred ceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEEecccc--cceeeEEEEEeCCCCceEEEee------------cC
Q 015371 42 RVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYAS------------IC 106 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~------------~d 106 (408)
.+..++|+|+|++++ ++..++.|.+||+.+++......... .+...+..++|+|++++|+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 588999999998765 55567899999998886655433221 1223567899999999998886 57
Q ss_pred cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc
Q 015371 107 AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 186 (408)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 186 (408)
+.|.+||+.+++..... .... .+.+++|+|++++|+++ ++.|++||+.+++....+..+.. .
T Consensus 115 ~~i~v~d~~~~~~~~~~--~~~~-------------~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~ 176 (337)
T 1pby_B 115 TRVALYDAETLSRRKAF--EAPR-------------QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-E 176 (337)
T ss_dssp CEEEEEETTTTEEEEEE--ECCS-------------SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-T
T ss_pred ceEEEEECCCCcEEEEE--eCCC-------------CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-C
Confidence 99999999877653222 1111 36788999999988888 68899999999988776654431 1
Q ss_pred eEEEEecCCCCEEEEecC-CC-----------------------eEEEEeccccccCCcc-ceeeecccCCeEEEEecCC
Q 015371 187 NTVCFADETGHLIFSGSD-DS-----------------------LCKVWDRRCFISKGRA-NGVLMGHLEGITFIDSRRD 241 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~~~-dg-----------------------~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ 241 (408)
..+.|+ +++..++..+. ++ .|.+||+. .++. ...+..+...+.+++|+|+
T Consensus 177 ~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 177 AETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp TTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEECTT
T ss_pred CCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEECCC
Confidence 123677 66665544433 22 46888875 3322 2334456667889999999
Q ss_pred CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 242 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 242 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
+++++++ ++.|.+||+.+. +.+..+.... ....++|+
T Consensus 252 g~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~-------~~~~~~~s 288 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPH-------SYYSVNVS 288 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSS-------CCCEEEEC
T ss_pred CCEEEEe--CCeEEEEECCCC----------------------------------cCcceecCCC-------ceeeEEEC
Confidence 9998888 789999998762 2223332221 12344788
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEEccCCC
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 355 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (408)
|+|++|++++.++.|++||+.+++.+..+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999999999999999999999999888865533
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=7.4e-23 Score=174.03 Aligned_cols=266 Identities=14% Similarity=0.172 Sum_probs=169.7
Q ss_pred ecccCceeEEEEcCCCCeEEEEeC---CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEE
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w 112 (408)
..+...+..++|+|||+ |++++. ++.|++|++.++... .......+...+..++|+|++++|++++ .++.+.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 45667788999999999 555543 689999999776422 2222223344688899999999998887 67999999
Q ss_pred ECCC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC-CCccee--eecC-cCCCce
Q 015371 113 DVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSL--RIPA-HKSDVN 187 (408)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~v~ 187 (408)
++.. +........... .. .+........+.+++|+|+|+.+++...++.|.+|++. +++... .+.. ....+.
T Consensus 114 ~~~~~g~~~~~~~~~~~-~~--~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHS-GH--GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EECTTSCEEEEEEEECC-CC--CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EeCCCCCeeecceeecC-CC--CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 9953 333222222110 00 00011122358899999999955555568899999998 454322 1222 234678
Q ss_pred EEEEecCCCCEEE-EecCCCeEEEEeccccccCCc--cceeeeccc------CCeEEEEecCCCCeE-EEeecCCeEEEE
Q 015371 188 TVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGR--ANGVLMGHL------EGITFIDSRRDGRYF-ISNGKDQTTKLW 257 (408)
Q Consensus 188 ~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~------~~i~~~~~~~~~~~l-~~~~~d~~i~iw 257 (408)
.++|+ |++++++ +...++.|.+|+++. ..+. ....+.... ..+..++|+|+|++| ++...++.|.+|
T Consensus 191 ~~~~s-pdg~~l~v~~~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 191 HLVFS-PDGQYAFLAGELSSQIASLKYDT--QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EEEEC-TTSSEEEEEETTTTEEEEEEEET--TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred eEEEC-CCCCEEEEEeCCCCEEEEEEecC--CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 89999 7888554 467789999999762 1122 122222222 347889999999977 455568999999
Q ss_pred eCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCC-CeE
Q 015371 258 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSV 336 (408)
Q Consensus 258 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i 336 (408)
++..... ...+..+..+.. ....++|+|||++|++++.+ +.|
T Consensus 268 ~~~~~g~-------------------------------~~~~~~~~~~~~------~~~~~~~spdg~~l~v~~~~~~~v 310 (347)
T 3hfq_A 268 AVTADGH-------------------------------LTLIQQISTEGD------FPRDFDLDPTEAFVVVVNQNTDNA 310 (347)
T ss_dssp EECGGGC-------------------------------EEEEEEEECSSS------CCCEEEECTTSSEEEEEETTTTEE
T ss_pred EECCCCc-------------------------------EEEeEEEecCCC------CcCeEEECCCCCEEEEEEcCCCcE
Confidence 9874110 011222222211 12345789999988888764 899
Q ss_pred EEE--ECCCCcee
Q 015371 337 YIY--DLVSGAQV 347 (408)
Q Consensus 337 ~vw--d~~~~~~~ 347 (408)
.+| |..+++..
T Consensus 311 ~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 311 TLYARDLTSGKLS 323 (347)
T ss_dssp EEEEECTTTCCEE
T ss_pred EEEEEeCCCCeEE
Confidence 999 55566654
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=7.1e-23 Score=178.15 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=153.5
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe----------eEEEec--ccccceeeEEEEEeCCCCceEE----E
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----------KIQKDI--ETKALRWTITDTSLSPDQRFLV----Y 102 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----------~~~~~~--~~~~~~~~v~~~~~~~~~~~l~----~ 102 (408)
....++.+++++++.++++++.++ +++|+..... ...... ....+...|.+++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999988 9998864210 011000 0112344699999999999999 7
Q ss_pred eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeeecC
Q 015371 103 ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPA 181 (408)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 181 (408)
++.|+.|++||+.+........ .+.+.......+|...|.+++|+|+ +.+|++++.||.|++||++++.......+
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~ 190 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQ---KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP 190 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSS---CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred cCCCceEEEEEccccccCCcCC---cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence 8889999999986541000000 0000001112335558999999997 78999999999999999999877666677
Q ss_pred cCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec-------ccCCeEEEEecCCCCeEEEee-cCC-
Q 015371 182 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNG-KDQ- 252 (408)
Q Consensus 182 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~d~- 252 (408)
|...|.+++|+ +++++|++|+.||.|++||++ +.....+.. |...+.++.|++++.++++.+ .||
T Consensus 191 ~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 191 STVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp GGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred CCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 89999999999 889999999999999999975 222333322 234789999999887775533 333
Q ss_pred -----eEEEEeCCCC
Q 015371 253 -----TTKLWDIRKM 262 (408)
Q Consensus 253 -----~i~iwd~~~~ 262 (408)
.+++|++++.
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 3899999864
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.3e-22 Score=173.11 Aligned_cols=244 Identities=11% Similarity=0.063 Sum_probs=179.8
Q ss_pred eEEEEEeCCCCceEEEeec-------CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 87 TITDTSLSPDQRFLVYASI-------CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~-------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
.+..++|+|+++++++++. ++.|.+||..+++...... ... .+..++|+|++++++++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-------------~~~~~~~s~dg~~l~v~ 106 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDL-------------KPFGATINNTTQTLWFG 106 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESS-------------CCCSEEEETTTTEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCC-------------CcceEEECCCCCEEEEE
Confidence 5788999999998888773 5789999998876533322 111 36778999999966655
Q ss_pred e-cCCeEEEEECCCCcceeeecCcCCC---------ceEEEEecCCCCEEEEec--CCCeEEEEeccccccCCccceeee
Q 015371 160 G-SDNFIYVYDLQANKCSLRIPAHKSD---------VNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLM 227 (408)
Q Consensus 160 ~-~dg~i~i~d~~~~~~~~~~~~~~~~---------v~~l~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 227 (408)
+ .++.|.+||..+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||+. ..+....+.
T Consensus 107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~~~ 181 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTAIQ 181 (353)
T ss_dssp ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEEEC
T ss_pred ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEEec
Confidence 4 4799999999999887777654322 6889999 7777666665 47899999964 566666666
Q ss_pred cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccc
Q 015371 228 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 307 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
.+...+..+.|+|+++++++++.++.|.+||+.+.. ....+.....
T Consensus 182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~----------------------------------~~~~~~~~~~ 227 (353)
T 3vgz_A 182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK----------------------------------ILSRKKLLDD 227 (353)
T ss_dssp CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE----------------------------------EEEEEECCCS
T ss_pred CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe----------------------------------EEEEEEcCCC
Confidence 566668899999999999999999999999988732 2222221110
Q ss_pred eeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEE-eecCCCcEEEEeeCC
Q 015371 308 LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI-SSSWDCNIVRWEIPG 385 (408)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~~~~ 385 (408)
. .......++++|+++++++++. ++.|.+||..+++.+..+.... ...++|+|++++++ +...++.|.+||+.+
T Consensus 228 ~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 228 G--KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp S--SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred C--CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 0 0011233468888997777665 4899999999999888886543 26799999999554 455799999999977
Q ss_pred CCC
Q 015371 386 IGE 388 (408)
Q Consensus 386 ~~~ 388 (408)
++.
T Consensus 304 ~~~ 306 (353)
T 3vgz_A 304 YKV 306 (353)
T ss_dssp TEE
T ss_pred CeE
Confidence 543
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=6e-22 Score=169.33 Aligned_cols=280 Identities=13% Similarity=0.122 Sum_probs=176.9
Q ss_pred ccCceeEEEEcCCCCeEEEEeCC----CcEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEE
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQE----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d----g~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w 112 (408)
+...+..++|+|||++|++++.+ +.|.+|+++.. ..+........+...+..+++ ++++|++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788899999999999999875 79999998763 222222222222335667777 788777766 57899999
Q ss_pred ECCCCcee-eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCcc------e-------e
Q 015371 113 DVGSSARE-SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKC------S-------L 177 (408)
Q Consensus 113 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------~-------~ 177 (408)
++...... .......+.+... .....+...+.+++|+|+|+++++++. ++.|.+|++..... + .
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGP-DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCS-CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCC-CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 99754321 1111111111000 000112234688999999997776654 78999998875431 1 1
Q ss_pred eecCcCCCceEEEEecCCCCEEEEec-CCCeEEEEeccccccCCcc--ceee---ecccCCeEEEEecCCCCeEEEeecC
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRA--NGVL---MGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
....+...+..++|+ |+++++++++ .++.|.+||++ .+.. ...+ ..+......++|+|+|++|+++..+
T Consensus 205 ~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 122345567899999 8888776666 68999999975 2222 2222 2233456899999999988776654
Q ss_pred --CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEE
Q 015371 252 --QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 329 (408)
Q Consensus 252 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 329 (408)
+.|.+|++...... ...+..+.. . .....++|+|||++|++
T Consensus 280 ~~~~i~v~~~~~~~g~------------------------------~~~~~~~~~-g------~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 280 KADGVAIFKVDETNGT------------------------------LTKVGYQLT-G------IHPRNFIITPNGKYLLV 322 (361)
T ss_dssp SSCEEEEEEECTTTCC------------------------------EEEEEEEEC-S------SCCCEEEECTTSCEEEE
T ss_pred CCCEEEEEEEcCCCCc------------------------------EEEeeEecC-C------CCCceEEECCCCCEEEE
Confidence 88999998631100 011122221 1 11234478999999888
Q ss_pred ee-CCCeEEEE--ECCCCceeEEE-ccCCCCeeeeeEe
Q 015371 330 GS-SDNSVYIY--DLVSGAQVAKL-DFHNAPVRDCCWH 363 (408)
Q Consensus 330 ~~-~dg~i~vw--d~~~~~~~~~~-~~~~~~v~~~~~~ 363 (408)
++ .++.|.+| |..+++..... ..+...+.|+.|.
T Consensus 323 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 323 ACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 87 57899996 54566654433 2244578888886
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.92 E-value=2.4e-22 Score=171.73 Aligned_cols=288 Identities=11% Similarity=0.045 Sum_probs=179.6
Q ss_pred eEEEEeCC--CcEEEEEcC--CCeeEEEeccc-ccceeeEEEEEeCCCCceEEEeecCcEEEEEECC-CCceeeeeeeee
Q 015371 54 FFVAASQE--SNIKVYNVD--KNWKIQKDIET-KALRWTITDTSLSPDQRFLVYASICAIVNIVDVG-SSARESLANVTI 127 (408)
Q Consensus 54 ~l~t~~~d--g~i~iw~~~--~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~ 127 (408)
+|++|+.. +.|.+|+++ ++.. ...... ......+..++|+|++++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l-~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTC-KLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEE-EEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCE-EEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 35556543 468887764 3422 211111 0112257789999999999988887 99999996 554422211110
Q ss_pred eeeeeeecCCCCCccceEEEEEcCCCCE--EEEEe-------------cCCeEEEEECC-CCcceeeec----CcCCCce
Q 015371 128 HKGLDFSADGDEDEFGIFSVKFSTDGQE--LVAAG-------------SDNFIYVYDLQ-ANKCSLRIP----AHKSDVN 187 (408)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~v~ 187 (408)
. + .+.+++|+|+|++ +++++ .++.+.+|++. +++....+. .+...+.
T Consensus 82 ~-g------------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 82 G-G------------HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp C-S------------SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred C-C------------CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 0 0 1445889999995 44553 58999999997 455443333 2456789
Q ss_pred EEEEecCCCCEEEEec-CCCeEEEEeccccccCCcc--ceeee--cccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCC
Q 015371 188 TVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRA--NGVLM--GHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 261 (408)
+++|+ |++++++++. .++.|++||+.. .++. +..+. .|...+..++|+|+|+++++++. ++.|.+|++..
T Consensus 149 ~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 149 GMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 99999 8888777665 467999999741 2222 22232 23567899999999998887765 68999998753
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeee----cccceeeEEEEEeecc-ccCCCcEEEEeeCCC--
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK----GHSVLRTLIRCYFSPE-YSTAQKYIYTGSSDN-- 334 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~s~~~~~l~~~~~dg-- 334 (408)
........ ...+..+. ++............++ |+|||++|++++.+.
T Consensus 225 ~~g~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~ 278 (365)
T 1jof_A 225 ATHMPVYT--------------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF 278 (365)
T ss_dssp TTCCEEEE--------------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred CCCcEEEc--------------------------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence 11000000 00000010 1000000000234557 899999988776432
Q ss_pred ----eEEEEECC-CCceeE---EEccCCCCeeeeeEeC---CCCeEEeecCC-CcEEEEeeCCC
Q 015371 335 ----SVYIYDLV-SGAQVA---KLDFHNAPVRDCCWHP---IYPMLISSSWD-CNIVRWEIPGI 386 (408)
Q Consensus 335 ----~i~vwd~~-~~~~~~---~~~~~~~~v~~~~~~~---~~~~l~s~~~d-g~v~iw~~~~~ 386 (408)
.|.+|++. +++... ....+...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 279 ~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 566443 2334555678899999 89999988764 89999999764
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=1.7e-21 Score=165.82 Aligned_cols=276 Identities=10% Similarity=0.066 Sum_probs=184.3
Q ss_pred eeEecCCccEEEeecCceEEEEEEecCce---eeeccc-CceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEEecc
Q 015371 6 EVNYSGRGRFSAADSCHVLSRYLPVNGPW---KVDGMN-SRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~---~l~~h~-~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
.++++++++++++.........++..... .+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 46788899888877766666677654432 233222 2588999999998665 455689999999998866544332
Q ss_pred ccc---ceeeEEEEEeCCCCceEEEeecC------------cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceE
Q 015371 81 TKA---LRWTITDTSLSPDQRFLVYASIC------------AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIF 145 (408)
Q Consensus 81 ~~~---~~~~v~~~~~~~~~~~l~~~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (408)
... ....+..++|+|++++|++++.+ +.|.+||+.+++.......... ...+.
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------~~~~~ 151 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM------------PRQVY 151 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC------------CSSCC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC------------CCccc
Confidence 211 02247789999999999998865 8999999987543221111111 11478
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCC------------------------CceEEEEecCCCC----
Q 015371 146 SVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS------------------------DVNTVCFADETGH---- 197 (408)
Q Consensus 146 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~~~---- 197 (408)
+++|+|+|+ +++++ +.|.+||+.+++....+..+.. ....++++ +++.
T Consensus 152 ~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~ 227 (349)
T 1jmx_B 152 LMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPA 227 (349)
T ss_dssp CEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------C
T ss_pred ceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCcc
Confidence 899999999 66654 4499999999887776653320 12334444 2221
Q ss_pred -------EEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEeecCCeEEEEeCCCCcCccccc
Q 015371 198 -------LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDN 269 (408)
Q Consensus 198 -------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 269 (408)
++.....++.+++|++. .+...+..++++| ++++++++ ++.|.+||+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~------- 285 (349)
T 1jmx_B 228 TADLLYGYLSVDLKTGKTHTQEFA-------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR------- 285 (349)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEEE-------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-------
T ss_pred ccccceeEEEEeccCCcEEecccc-------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-------
Confidence 12233344555555532 2456788999999 99998888 889999999872
Q ss_pred cccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 015371 270 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (408)
+.+..+.... ....++|+|++++|++++.++.|++||+.+++.+..
T Consensus 286 ---------------------------~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 286 ---------------------------KLIKAANLDH-------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp ---------------------------EEEEEEECSS-------CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred ---------------------------eEEEEEcCCC-------CccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 2223332211 123457888999999888899999999999998888
Q ss_pred EccC
Q 015371 350 LDFH 353 (408)
Q Consensus 350 ~~~~ 353 (408)
+..+
T Consensus 332 ~~~~ 335 (349)
T 1jmx_B 332 IKLP 335 (349)
T ss_dssp EECS
T ss_pred eecC
Confidence 8654
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4.9e-23 Score=187.42 Aligned_cols=232 Identities=10% Similarity=0.061 Sum_probs=165.3
Q ss_pred eeeEEEEEeCCCCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--
Q 015371 85 RWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-- 161 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 161 (408)
..+|.+++|+|||+.||+++. +|.++||++.+++...+.. +. ...+..+.|+|| +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~---~~-----------~~~~~~~~~spd-~~l~~~~~~~ 85 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---EP-----------INSVLDPHYGVG-RVILVRDVSK 85 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS---SC-----------CSEECEECTTCS-EEEEEEECST
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec---cc-----------ccccccccCCCC-eEEEEeccCC
Confidence 347999999999999999887 9999999986665433221 11 125889999999 77776664
Q ss_pred -CCeEEEEECCC---CcceeeecCcCCCceEEEEecCCC-CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEE
Q 015371 162 -DNFIYVYDLQA---NKCSLRIPAHKSDVNTVCFADETG-HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 236 (408)
Q Consensus 162 -dg~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 236 (408)
+....+|.+.. +... .+.. ...+...+|+ +++ ..+++.+.++.+.+||+. .++... +..+.. .++
T Consensus 86 g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~----~g~~~~-l~~~~~--~~~ 155 (582)
T 3o4h_A 86 GAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGV-DTGEAVVFTGATEDRVALYALD----GGGLRE-LARLPG--FGF 155 (582)
T ss_dssp TSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEE-ECSSCEEEEEECSSCEEEEEEE----TTEEEE-EEEESS--CEE
T ss_pred CCcceEEEEEeccCCCccc-cccC-CCCceeeeeC-CCCCeEEEEecCCCCceEEEcc----CCcEEE-eecCCC--ceE
Confidence 34445544322 2222 3332 2234566888 444 344444444555699975 444333 333333 789
Q ss_pred EecCCCCeEEEeecC----CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEE
Q 015371 237 DSRRDGRYFISNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 312 (408)
Q Consensus 237 ~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
.|+|||++|++++.+ +.|++||+.+.. ...+..+..
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------~~~l~~~~~----- 195 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------LRVFDSGEG----- 195 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------CEEECCSSC-----
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------ceEeecCCC-----
Confidence 999999999988877 789999987622 233444432
Q ss_pred EEEeeccccCCCcEEEEeeCCC--eEEEEECCCCceeEEEccCCCCeeeee--------EeCCCCeEEeecCCCcEEEEe
Q 015371 313 RCYFSPEYSTAQKYIYTGSSDN--SVYIYDLVSGAQVAKLDFHNAPVRDCC--------WHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 313 ~~~~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~dg~v~iw~ 382 (408)
....++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.||.+++|+
T Consensus 196 -~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 196 -SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp -EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred -ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 235678999999999888888 8999999998887 7778888888888 999999899999999999999
Q ss_pred e
Q 015371 383 I 383 (408)
Q Consensus 383 ~ 383 (408)
+
T Consensus 274 ~ 274 (582)
T 3o4h_A 274 D 274 (582)
T ss_dssp T
T ss_pred E
Confidence 9
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=5.7e-21 Score=178.34 Aligned_cols=329 Identities=12% Similarity=0.060 Sum_probs=196.9
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec--C-ceeeecccCc-----eeEEEEcCCCCeEEEEeCC---------CcEEE
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN--G-PWKVDGMNSR-----VYTSQFSNDGSFFVAASQE---------SNIKV 66 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~--~-~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---------g~i~i 66 (408)
..+++|+|||++++++ +.....+... . ...+.+|... ...++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 3578999999999887 3333444432 2 2345566533 2447899999999998875 56779
Q ss_pred EEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCC-----CCc
Q 015371 67 YNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGD-----EDE 141 (408)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 141 (408)
||+.+++... ...+...+...+|||||+.||.+. ++.|++|++.+++...+.. .......+....+ +.-
T Consensus 97 ~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 97 YDLNKRQLIT----EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EETTTTEECC----SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTS
T ss_pred EECCCCcEEE----cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhc
Confidence 9999885332 223344689999999999999885 7899999998876433221 1111100000000 000
Q ss_pred cceEEEEEcCCCCEEEEEecCC------------------------------------eEEEEECCC---Cc--ceeeec
Q 015371 142 FGIFSVKFSTDGQELVAAGSDN------------------------------------FIYVYDLQA---NK--CSLRIP 180 (408)
Q Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~ 180 (408)
.....+.|||||++|+.++.|. .|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1124589999999999875321 588899988 73 222333
Q ss_pred ------CcCCCceEEEEecCCCCEEEEecC----CCeEEEEeccccccCCc------cceee--ecccCCeE-----EEE
Q 015371 181 ------AHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGR------ANGVL--MGHLEGIT-----FID 237 (408)
Q Consensus 181 ------~~~~~v~~l~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~------~~~~~--~~~~~~i~-----~~~ 237 (408)
+|...+..++|+ |++++++.... +..|.+||+. .++ ....+ .+|...+. .+.
T Consensus 251 ~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp CCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred CCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECC----CCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 377789999999 78886665432 3479999975 333 12222 44555544 788
Q ss_pred ecCCCCeEE-Eeec-CC--eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEE
Q 015371 238 SRRDGRYFI-SNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 313 (408)
Q Consensus 238 ~~~~~~~l~-~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
|+|||+.|+ ..+. +| .|++||+..... .....+.-. .. .
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----------------------------------~~lT~g~~~-v~--~ 368 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDC----------------------------------TFITKGTWE-VI--G 368 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSSC----------------------------------EESCCSSSC-EE--E
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCce----------------------------------EecccCCEE-EE--E
Confidence 999999876 5553 33 577888765221 111111111 11 1
Q ss_pred EEeeccccCCCcEE-EEeeC----CC--eEEEEECCCCceeEEEcc----CCCCeeeeeEeCCCCeEEeecC---CCcEE
Q 015371 314 CYFSPEYSTAQKYI-YTGSS----DN--SVYIYDLVSGAQVAKLDF----HNAPVRDCCWHPIYPMLISSSW---DCNIV 379 (408)
Q Consensus 314 ~~~~~~~s~~~~~l-~~~~~----dg--~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~---dg~v~ 379 (408)
... + |++.| ++++. .+ .|+..++..++....+.. ....+..+.|+|++++++.... -..+.
T Consensus 369 -~~~--~--d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~ 443 (740)
T 4a5s_A 369 -IEA--L--TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYT 443 (740)
T ss_dssp -EEE--E--CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEE
T ss_pred -EEE--E--eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEE
Confidence 111 2 24444 44443 23 455556554443334432 2356889999999996654332 24677
Q ss_pred EEeeCCCC
Q 015371 380 RWEIPGIG 387 (408)
Q Consensus 380 iw~~~~~~ 387 (408)
+++..+++
T Consensus 444 l~~~~~~~ 451 (740)
T 4a5s_A 444 LHSSVNDK 451 (740)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 77776553
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.89 E-value=3.4e-21 Score=179.83 Aligned_cols=294 Identities=12% Similarity=0.031 Sum_probs=180.9
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc--cceeeEEEEEeCCCCceEEEeecC---------cE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASIC---------AI 108 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~ 108 (408)
.....+++|+|||++++++ |++|++||+.+++......... ........++|||||++|+.++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 4457789999999999886 8999999999886543322211 111123457899999999998875 56
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee-cCcCCC--
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD-- 185 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-- 185 (408)
+.+||+.+++...+. .+ ...+...+|||||+.|+.+. ++.|++|++.+++..... .++...
T Consensus 94 ~~~~d~~~~~~~~l~---~~------------~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 94 YDIYDLNKRQLITEE---RI------------PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp EEEEETTTTEECCSS---CC------------CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred EEEEECCCCcEEEcc---cC------------CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee
Confidence 779999988754322 11 22589999999999999884 789999999887754322 222222
Q ss_pred ---------------ceEEEEecCCCCEEEEecCCC------------------------------------eEEEEecc
Q 015371 186 ---------------VNTVCFADETGHLIFSGSDDS------------------------------------LCKVWDRR 214 (408)
Q Consensus 186 ---------------v~~l~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~ 214 (408)
...+.|+ |+++.|+.++.|. .|++||+.
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~ 236 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred cCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence 2358999 8999888875332 46777764
Q ss_pred ccccCCc--cceeee------cccCCeEEEEecCCCCeEEEeec----CCeEEEEeCCCCcCccccccccccccccceee
Q 015371 215 CFISKGR--ANGVLM------GHLEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 282 (408)
Q Consensus 215 ~~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
... .+. ....+. +|...+..++|+|||+.++.... +..|.+||+.++......
T Consensus 237 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~-------------- 301 (740)
T 4a5s_A 237 SLS-SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC-------------- 301 (740)
T ss_dssp SCC-SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE--------------
T ss_pred CCC-CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce--------------
Confidence 100 021 222232 26677899999999996665433 336999998874310000
Q ss_pred cccccceeeccCCCcceeee--ecccceeeEEEEEeeccccCCCcEEE-EeeC-C--CeEEEEECCCCceeEEEccCCCC
Q 015371 283 EYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIY-TGSS-D--NSVYIYDLVSGAQVAKLDFHNAP 356 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~ 356 (408)
..+..+ ..+...... .....+.|+|||+.|+ ..+. + ..|++||+.+++.. .+......
T Consensus 302 --------------~~~~~l~~~~~~~~v~~-~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~ 365 (740)
T 4a5s_A 302 --------------LVARQHIEMSTTGWVGR-FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWE 365 (740)
T ss_dssp --------------CGGGCEEEECSSSCSSS-SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSC
T ss_pred --------------eEEEEeeeccCCceEcc-CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEE
Confidence 000111 112111100 0012467999999877 5554 3 46889998766554 44434555
Q ss_pred eeeeeEeCCCCe-EEeecC----CCcEEEEeeC
Q 015371 357 VRDCCWHPIYPM-LISSSW----DCNIVRWEIP 384 (408)
Q Consensus 357 v~~~~~~~~~~~-l~s~~~----dg~v~iw~~~ 384 (408)
|..+.+ ++++. ++++.. .+...||.+.
T Consensus 366 v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 366 VIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 665542 34554 444443 2345555543
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=1.2e-21 Score=169.82 Aligned_cols=291 Identities=11% Similarity=0.004 Sum_probs=181.0
Q ss_pred CceeEEEEcCCCCeEEEEeCC---CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 41 SRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
..+.+++|||||++|+..... ..|.+|++.+++... ... ........+.|+|||+.|+.++.++.+.+|++.++
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTE--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCC--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eec--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 347889999999998877543 368888988775432 222 11112233789999999999999999999999887
Q ss_pred ceeeeeeeeee---eeeeeecCCCCCcc--ceEEEEEcCCCCEEEEE-----ecCCeEEEEECCCCcceeeecCcCCCce
Q 015371 118 ARESLANVTIH---KGLDFSADGDEDEF--GIFSVKFSTDGQELVAA-----GSDNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
+...+...... .+..+......... ....+.|+|+++.++.+ ..+..|++||+.+++..... .+...+.
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~ 191 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLG 191 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEE
T ss_pred CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccc
Confidence 65443332110 00000000000000 00013567888877654 34678999999988755444 4677889
Q ss_pred EEEEecCCCCEEEEecCC------CeEEEEeccccccCCccceeeecc--cCCeEEEEecCCCCeEEEeecC-----CeE
Q 015371 188 TVCFADETGHLIFSGSDD------SLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRRDGRYFISNGKD-----QTT 254 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----~~i 254 (408)
.+.|+|.++..|+..+.+ ..|.+||+. .. ....+..+ ...+..+.|+|+|++|+..+.+ +.|
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GS-NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SC-CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECC----CC-ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 999993267766655443 357788853 22 22223222 2357789999999988777554 449
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEee--
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGS-- 331 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~-- 331 (408)
++||+.+.. ...+...... . +.|+| ||++++.++
T Consensus 267 ~~~d~~~g~-----------------------------------~~~l~~~~~~----~----~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 267 YKANPETLE-----------------------------------NEEVMVMPPC----S----HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp EEECTTTCC-----------------------------------EEEEEECCSE----E----EEEECSSSSEEEEEECC
T ss_pred EEEECCCCC-----------------------------------eEEeeeCCCC----C----CCccCCCCceEEEecCC
Confidence 999987622 1111111100 0 46788 899888754
Q ss_pred --------------CCCeEEEEECCCCceeEEEccCCC-----------CeeeeeEeCCCCeEEeecC-CCcEEEEeeC
Q 015371 332 --------------SDNSVYIYDLVSGAQVAKLDFHNA-----------PVRDCCWHPIYPMLISSSW-DCNIVRWEIP 384 (408)
Q Consensus 332 --------------~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~-dg~v~iw~~~ 384 (408)
.++.|++||+.+++.. .+..+.. .+..++|+|+|+.|+.++. ++...+|.+.
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887653 4444443 2677899999997776654 5665666554
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.89 E-value=1.8e-20 Score=173.30 Aligned_cols=321 Identities=14% Similarity=0.042 Sum_probs=195.8
Q ss_pred ceeeEecCCccEEEee--cCc---eEEEEEEecCceeeecccCcee---------EEEEc--CCCCe-EEEEeC-CCcEE
Q 015371 4 GREVNYSGRGRFSAAD--SCH---VLSRYLPVNGPWKVDGMNSRVY---------TSQFS--NDGSF-FVAASQ-ESNIK 65 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~--~~~---~~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~~~~~-l~t~~~-dg~i~ 65 (408)
-+.+++|+++.+.+.. ... .+|..........+..|...+. ...|+ |||++ |+.++. +..|.
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~ 105 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLY 105 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEE
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEE
Confidence 3578899888776665 222 2333323344567777877766 66666 99998 776654 45676
Q ss_pred EEEcC--C-CeeEEEecccc--cceeeEEEEEeCCCCceEEEeecC----------cEEEEEECCC------Cceeeeee
Q 015371 66 VYNVD--K-NWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASIC----------AIVNIVDVGS------SARESLAN 124 (408)
Q Consensus 66 iw~~~--~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~~w~~~~------~~~~~~~~ 124 (408)
+|++. . + ....+.... .+...+..++|+|||+.|++++.+ ..|++||+.+ ++...+..
T Consensus 106 ~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 184 (662)
T 3azo_A 106 AFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184 (662)
T ss_dssp EECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred EEcCCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence 67665 2 3 333322211 144578899999999999998876 5899999987 44322210
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC--------CeEEEEECC-CC---cceeeecCcCCCceEEEEe
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------NFIYVYDLQ-AN---KCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~l~~~ 192 (408)
.. ...+..++|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+.|+
T Consensus 185 --~~------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 185 --DA------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp --SC------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred --cC------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 11 1247788999999999988755 379999998 56 4444444457889999999
Q ss_pred cCCCCEEEEecCCC--eEEEEeccccccCCccceeeecccCC--------eEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 193 DETGHLIFSGSDDS--LCKVWDRRCFISKGRANGVLMGHLEG--------ITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 193 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
|+++++++++.++ .|.+||+. .++.......+... +..++|+|++++++++.. +.+++|.+...
T Consensus 251 -pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 251 -PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp -TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred -CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 7888888888888 55555542 23322222222221 467889999999999988 99999944321
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCC--eEEEEE
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--SVYIYD 340 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~vwd 340 (408)
...+..+..+.... ..++ +++++.-++++++.+. .|+++|
T Consensus 325 ---------------------------------~~~~~~l~~~~~~~---~~~~--s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 325 ---------------------------------SGELVDAAGPWTEW---AATL--TVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp ---------------------------------TTEEEECCSSCCEE---EEEE--EEETTEEEEEEEETTEEEEEEEEE
T ss_pred ---------------------------------CCcEEEecCCCCeE---EEEE--ecCCCEEEEEEcCCCCCCEEEEEE
Confidence 01233333332211 1111 2222233333444443 567778
Q ss_pred CCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 341 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
+.+++.......+...+....+.+.....+.+..+..|..|-+
T Consensus 367 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 367 TVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp TTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred CCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 7777765544555555555555554444555444446666654
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=4.4e-20 Score=156.84 Aligned_cols=282 Identities=11% Similarity=0.025 Sum_probs=184.8
Q ss_pred CCCeEEEEe------CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec----------CcEEEEEEC
Q 015371 51 DGSFFVAAS------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----------CAIVNIVDV 114 (408)
Q Consensus 51 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~~w~~ 114 (408)
+++++++.. .|+.|.+||..+++.+..... ...+ .++|+||+++++++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 556666543 367999999988866544322 2223 8999999999998863 678999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceee-ecCcCCCceEEEE
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLR-IPAHKSDVNTVCF 191 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~ 191 (408)
.+.+........... ..+......++++|||++|+++.. ++.|.+||+.+++.+.. +.. . ....+.+
T Consensus 89 ~t~~~~~~i~~~~~~--------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~ 158 (361)
T 2oiz_A 89 DKLTFEKEISLPPKR--------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIP 158 (361)
T ss_dssp TTCCEEEEEEECTTB--------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEE
T ss_pred cCCcEEEEEEcCccc--------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEE
Confidence 876653322211000 000113567899999999999875 57899999999988777 542 1 2233556
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccce------eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANG------VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
.|.....+++.+.||.+.+|++. ..++... .+.....++ .+.+++++..++..+.++.+.++|+......
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~---~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLG---EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEEC---TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred cCCCCeeEEEECCCCcEEEEEEC---CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 64455788888999999999864 1233221 111222222 2334667777777778899999998652211
Q ss_pred cccccccccccccceeecccccceeeccCCCcceeeeeccc----ceeeEEEEEeeccccCCCcEEEEeeC---------
Q 015371 266 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS--------- 332 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~--------- 332 (408)
. ...+.... ............+++|+++.++++..
T Consensus 235 ~--------------------------------~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~ 282 (361)
T 2oiz_A 235 V--------------------------------DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK 282 (361)
T ss_dssp E--------------------------------EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred e--------------------------------cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence 0 00000000 00000000011257788887776643
Q ss_pred --CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 333 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 333 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.+.|.+||+.+++.+.++..+. +.+++|+|+|++|++++. +.|.+||..++
T Consensus 283 ~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 283 FPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3489999999999999998776 999999999999998886 99999999887
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=9.6e-20 Score=154.77 Aligned_cols=269 Identities=14% Similarity=0.096 Sum_probs=178.5
Q ss_pred eeecccCceeEEEEcCCCCeEEEEe----------CCCcEEEEEcCCCeeEEEeccccc---ceeeEEEEEeCCCCceEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKA---LRWTITDTSLSPDQRFLV 101 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~ 101 (408)
.+..+..+ .++|+|||++|+++. .++.|.+||..+.+.+........ +......++++|||++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 34445454 899999999999886 256799999988766655433211 112456789999999999
Q ss_pred Eeec--CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCC-Ccce-
Q 015371 102 YASI--CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQA-NKCS- 176 (408)
Q Consensus 102 ~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~- 176 (408)
++.. ++.|.+||+.+.+..... +... ....+.+.|++ ..+++.+.||.+.++++.. ++..
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~-i~~~--------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~ 188 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDV-TAAA--------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS 188 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEE-GGGT--------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred EECCCCCCeEEEEECCCCcEEEEE-ecCC--------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence 8874 589999999987653210 2111 12235566755 5677788899999888865 4433
Q ss_pred -----eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec------c----cCCeEEEEecCC
Q 015371 177 -----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG------H----LEGITFIDSRRD 241 (408)
Q Consensus 177 -----~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~----~~~i~~~~~~~~ 241 (408)
..+.....++ .+.++ +++..++..+.++.+.++|+.. ........+.- + ......++++|+
T Consensus 189 ~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 189 QSRSKQMFSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSG--DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEECCCCSCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSS--SSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred eccccceEcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecC--CCceecccccccCccccccccccCCeeEEEEecC
Confidence 1222222222 22334 4566666677889999999741 11111111110 0 111223789999
Q ss_pred CCeEEEeec-----------CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 242 GRYFISNGK-----------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 242 ~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
++.++++.. .+.|.+||+.+ .+.+..+..+.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~---- 306 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD---- 306 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT----
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC----
Confidence 887776543 34799999987 34455555443
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC--ceeEEEccCCCCeeeeeEeCCCC
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNAPVRDCCWHPIYP 367 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 367 (408)
.+.++|+|||++|++++. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 307 ----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 344578899999998887 99999999999 99999877777888999999985
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.88 E-value=3.4e-20 Score=171.50 Aligned_cols=300 Identities=10% Similarity=0.028 Sum_probs=189.8
Q ss_pred eeeecccCceeEEEEcCCCCeEEEE--eCCCcEEEEEcCCCeeEEEecccccceeeEE---------EEEeC--CCCce-
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAA--SQESNIKVYNVDKNWKIQKDIETKALRWTIT---------DTSLS--PDQRF- 99 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~- 99 (408)
..+.+|...|..++|++++-+++.. +.++...||....+.....+.... ..+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP---WNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT---CCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC---ccccccccccCCccceeeeecCCCeE
Confidence 3467899999999999887777777 557889999965443443332222 2333 44455 99998
Q ss_pred EEEeec-CcEEEEEECC--C-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC----------CeE
Q 015371 100 LVYASI-CAIVNIVDVG--S-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----------NFI 165 (408)
Q Consensus 100 l~~~~~-dg~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i 165 (408)
|+.++. +..|.++++. + ++...+..... ..+...+..++|+|||+.|++++.+ ..|
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA----------VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCC----------STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCcc----------CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 776654 4566666665 2 33222211100 0022258899999999999998876 589
Q ss_pred EEEECCC------Ccceeeec-CcCCCceEEEEecCCCCEEEEecCC--------CeEEEEeccccccCC---ccceeee
Q 015371 166 YVYDLQA------NKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKG---RANGVLM 227 (408)
Q Consensus 166 ~i~d~~~------~~~~~~~~-~~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~---~~~~~~~ 227 (408)
++||+.+ ++. ..+. .+...+..++|+ |+++.|+.++.+ ..|.+||+. ..+ .......
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~---~~g~~~~~~~l~~ 238 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVT---EDGRFADTRTLLG 238 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEEC---TTSCEEEEEEEEE
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEEC---CCCcccccEEeCC
Confidence 9999987 554 4454 556778889999 899999877755 379999974 123 3333344
Q ss_pred cccCCeEEEEecCCCCeEEEeecCC--eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecc
Q 015371 228 GHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 305 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
++...+..+.|+|||++++++..++ .|.+||+.+.... .....+
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~----------------------------------~l~~~~ 284 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT----------------------------------QLCRRE 284 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE----------------------------------ESSCCS
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee----------------------------------eccccc
Confidence 4578899999999999888887788 5666665442110 000010
Q ss_pred cceeeE--EEEEeeccccCCCcEEEEeeCCCeEEEE--ECCCCceeEEEccCCCCeeee-eEeCCCCeEEeecCCCc--E
Q 015371 306 SVLRTL--IRCYFSPEYSTAQKYIYTGSSDNSVYIY--DLVSGAQVAKLDFHNAPVRDC-CWHPIYPMLISSSWDCN--I 378 (408)
Q Consensus 306 ~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~--v 378 (408)
...... .......+++|+++++++++. +.+++| |+.+++ +..+..|...+..+ +++.+.-++++++.+.. |
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 000000 000112356788999999998 998888 655554 67777787778776 55443334455555654 4
Q ss_pred EEEeeCCCC
Q 015371 379 VRWEIPGIG 387 (408)
Q Consensus 379 ~iw~~~~~~ 387 (408)
.+||+.+++
T Consensus 363 ~~~d~~~g~ 371 (662)
T 3azo_A 363 VELDTVTGR 371 (662)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 445554543
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.87 E-value=6.8e-19 Score=149.60 Aligned_cols=258 Identities=10% Similarity=0.148 Sum_probs=173.8
Q ss_pred CceeEEEEcCCCCeEEEEe---------CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---c-
Q 015371 41 SRVYTSQFSNDGSFFVAAS---------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---A- 107 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g- 107 (408)
..+..+++ ||+++|... .++.|.+|++.+++... + ..+..++|+|||+.|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 44677778 888887642 25679999998874322 2 258889999999999987754 3
Q ss_pred -EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC------------------------
Q 015371 108 -IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------------------------ 162 (408)
Q Consensus 108 -~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------ 162 (408)
.|.+|++.+++...+... . .+..+.|+|||+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~~---------------~-~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEA---------------K-NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE---------------S-EEEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred ceEEEEECCCCceEEEEcC---------------C-CccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 477788877654332221 1 17789999999999888643
Q ss_pred ---CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCC-------eEEEEeccccccCCccceeeecccCC
Q 015371 163 ---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS-------LCKVWDRRCFISKGRANGVLMGHLEG 232 (408)
Q Consensus 163 ---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~ 232 (408)
..|++||+.+++.+..+.. . .+..++|+ |++ +++++..++ ...+|.++ .++ ...+..+ ..
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~-~~ 218 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK-VS 218 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-ES
T ss_pred CccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-cc
Confidence 5799999998876455544 4 88999999 788 777776542 45666653 222 2333334 45
Q ss_pred eEEEEecCCCCeEEEeecC--------CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec
Q 015371 233 ITFIDSRRDGRYFISNGKD--------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 304 (408)
Q Consensus 233 i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
+..+ +|+|+.|+.++.+ ..|.+|| +. +.......
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~~~ 260 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGILDE 260 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESSTT
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEecccc
Confidence 5544 9999998877754 3577777 21 11111112
Q ss_pred ccceeeEEEEEe-eccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcE-EEEe
Q 015371 305 HSVLRTLIRCYF-SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI-VRWE 382 (408)
Q Consensus 305 ~~~~~~~~~~~~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v-~iw~ 382 (408)
+... +. .+.|+ |+ ++++++.++.+++| +.+++... +..+...|.+++|+| .++++++.++.. .+|.
T Consensus 261 ~~~~------~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 261 VDRG------VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp CCSE------EEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred CCcc------cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 2111 11 14577 78 88999999999999 87666544 434577899999999 677777777665 7887
Q ss_pred eC
Q 015371 383 IP 384 (408)
Q Consensus 383 ~~ 384 (408)
+.
T Consensus 329 ~~ 330 (347)
T 2gop_A 329 WD 330 (347)
T ss_dssp ES
T ss_pred eC
Confidence 76
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=1.5e-20 Score=162.41 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=146.3
Q ss_pred eEecCCccEEEeecC-ce--EEEEEEec--Cceee-ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 7 VNYSGRGRFSAADSC-HV--LSRYLPVN--GPWKV-DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 7 ~~~s~dg~~~~~~~~-~~--~~~~~~~~--~~~~l-~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
.+|||||++++.... .. ....++.. ....+ .+|...+..++|+|||+.|+.++.++.|++||+.+++.......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999997765443 22 12233322 22233 35556666789999999999999999999999998855433222
Q ss_pred cccceeeEEE--EEeCCCCceEEEe----------------------ecCcEEEEEECCCCceeeeeeeeeeeeeeeecC
Q 015371 81 TKALRWTITD--TSLSPDQRFLVYA----------------------SICAIVNIVDVGSSARESLANVTIHKGLDFSAD 136 (408)
Q Consensus 81 ~~~~~~~v~~--~~~~~~~~~l~~~----------------------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (408)
.. ..+.. ..++|+++.++.. ..+..|.+||+.+++...+.. ...
T Consensus 121 -~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~------ 188 (388)
T 3pe7_A 121 -PA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---ENQ------ 188 (388)
T ss_dssp -CT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---ESS------
T ss_pred -hh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---CCc------
Confidence 22 12332 3458999988743 234689999998876543322 111
Q ss_pred CCCCccceEEEEEcC-CCCEEEEEecC------CeEEEEECCCCcceeeecCcC--CCceEEEEecCCCCEEEEec-CCC
Q 015371 137 GDEDEFGIFSVKFST-DGQELVAAGSD------NFIYVYDLQANKCSLRIPAHK--SDVNTVCFADETGHLIFSGS-DDS 206 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~l~~~~-~dg 206 (408)
.+..+.|+| ||+.|+.+..+ ..|+++|...++.. .+..+. ..+..++|+ |+++.|+..+ .++
T Consensus 189 ------~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 189 ------WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWV-PDGSALVYVSYLKG 260 (388)
T ss_dssp ------CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEEC-TTSSCEEEEEEETT
T ss_pred ------cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceEC-CCCCEEEEEecCCC
Confidence 478999999 99998887653 37888888766543 343333 257788999 7887665433 222
Q ss_pred ----eEEEEeccccccCCc--cceeeecccCC---eEEEEecCCCCeEEEe---------ecCCeEEEEeCCC
Q 015371 207 ----LCKVWDRRCFISKGR--ANGVLMGHLEG---ITFIDSRRDGRYFISN---------GKDQTTKLWDIRK 261 (408)
Q Consensus 207 ----~i~iwd~~~~~~~~~--~~~~~~~~~~~---i~~~~~~~~~~~l~~~---------~~d~~i~iwd~~~ 261 (408)
.|.+||+. .++ .+..+.++... ...+.|+|||+.|+.. ..+..|++||+.+
T Consensus 261 ~~~~~l~~~d~~----~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 261 SPDRFIYSADPE----TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CCCEEEEEECTT----TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CCcceEEEEecC----CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 39999975 332 22222221100 1123689999987754 4466899999887
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=7.6e-20 Score=156.27 Aligned_cols=243 Identities=12% Similarity=0.055 Sum_probs=158.6
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEe---cCceeeeccc--CceeEEEEcCCCCe--EEEEe-------------CCCc
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPV---NGPWKVDGMN--SRVYTSQFSNDGSF--FVAAS-------------QESN 63 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~---~~~~~l~~h~--~~v~~~~~s~~~~~--l~t~~-------------~dg~ 63 (408)
...++|+|||+++++.+.. ....+.. .....+..|. +.+.+++|+|||++ ++++. .++.
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 4578999999977665544 3333332 2222222222 34677999999994 55553 6899
Q ss_pred EEEEEcCC-CeeEEEeccc-ccceeeEEEEEeCCCCceEEEeec-CcEEEEEECC-CCceeeeeeeeeeeeeeeecCCCC
Q 015371 64 IKVYNVDK-NWKIQKDIET-KALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVG-SSARESLANVTIHKGLDFSADGDE 139 (408)
Q Consensus 64 i~iw~~~~-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 139 (408)
+.+|++.. ++........ ..+...+.+++|+|||++|+++.. ++.|++|++. +++.......... .
T Consensus 121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----------~ 190 (365)
T 1jof_A 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----------D 190 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----------S
T ss_pred EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----------C
Confidence 99999974 4332222111 112346889999999998887654 6799999998 5654322222110 0
Q ss_pred CccceEEEEEcCCCCEEEEEec-CCeEEEEECC--CCccee------eecC----cCC------CceEEE-EecCCCCEE
Q 015371 140 DEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQ--ANKCSL------RIPA----HKS------DVNTVC-FADETGHLI 199 (408)
Q Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~------~~~~----~~~------~v~~l~-~~~~~~~~l 199 (408)
+...+..++|+|+|+++++++. ++.|.+|++. +++... .+.. |.. .+..++ |+ |++++|
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-pdG~~l 269 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-FSGKYM 269 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-TTSSEE
T ss_pred CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-CCCCEE
Confidence 1125889999999999988775 6899999765 454321 2221 222 478999 99 889888
Q ss_pred EEecCCC------eEEEEeccccccCCccce---eeecccCCeEEEEecC---CCCeEEEeecC-CeEEEEeCCC
Q 015371 200 FSGSDDS------LCKVWDRRCFISKGRANG---VLMGHLEGITFIDSRR---DGRYFISNGKD-QTTKLWDIRK 261 (408)
Q Consensus 200 ~~~~~dg------~i~iwd~~~~~~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~~~~~d-~~i~iwd~~~ 261 (408)
++++.+. .|.+|++.. .++... ....+......++|+| +|++|++++.+ +.|.+|++..
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~---~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRD---CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECT---TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEECCCCCCCCCCeEEEEEECC---CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 7766432 899999741 233322 1333445567889999 89999988764 8999999875
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=6.3e-19 Score=148.19 Aligned_cols=246 Identities=11% Similarity=0.106 Sum_probs=174.5
Q ss_pred eeEEEEEeCCCCceEEEeecC------------------------cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCc
Q 015371 86 WTITDTSLSPDQRFLVYASIC------------------------AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDE 141 (408)
Q Consensus 86 ~~v~~~~~~~~~~~l~~~~~d------------------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (408)
+.+.+++++|+|+++++...+ +.|.+||..+++...... ..+.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------------~~~~ 90 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-------------KNLF 90 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-------------TTTC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-------------CCcc
Confidence 368999999999988887766 479999988776532111 0112
Q ss_pred cceEEEEEcCCCCEEEEEecCCeEEEEECCCCc-ceeee---------cCcCCCceEEEEecCCCCEEEEec-CCCeEEE
Q 015371 142 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRI---------PAHKSDVNTVCFADETGHLIFSGS-DDSLCKV 210 (408)
Q Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~i 210 (408)
..+..++++++|+.+++...++.|++||..... .+..+ ..+-.....++++|.++.++++.+ .++.|++
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 258899999999988887778999999986542 34444 234456889999943888888886 6999999
Q ss_pred EeccccccCCccceeeec----------ccCCeEEEEecCC-CCeEEEeecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 211 WDRRCFISKGRANGVLMG----------HLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 211 wd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
||. .+..+..+.. +......++++|+ +.++++...++.|++||..++
T Consensus 171 ~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G----------------- 228 (329)
T 3fvz_A 171 FSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK----------------- 228 (329)
T ss_dssp ECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-----------------
T ss_pred EcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-----------------
Confidence 994 4455544432 2344889999998 777777778899999998752
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC------CCcEEEEeeCCCeEEEEECCCCceeEEEc--
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST------AQKYIYTGSSDNSVYIYDLVSGAQVAKLD-- 351 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-- 351 (408)
+.+..+........ .+.++++| +|+..++...+..|++||..+++.+..+.
T Consensus 229 -----------------~~~~~~~~~~~~~~----~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~ 287 (329)
T 3fvz_A 229 -----------------EFVREIKHASFGRN----VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV 287 (329)
T ss_dssp -----------------CEEEEECCTTTTTC----EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS
T ss_pred -----------------cEEEEEeccccCCC----cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC
Confidence 22222221111011 11223344 34444445556789999999999998883
Q ss_pred -cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 352 -FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 352 -~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
.+...+..++++|+|.++++...++.|++|++....
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 566779999999999888888899999999997643
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=6.8e-19 Score=148.64 Aligned_cols=276 Identities=10% Similarity=0.038 Sum_probs=181.7
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
..|.+++|++++..++..+.++.++.|. +....... .+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS---KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE---SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEe---ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4578899999988888778888999993 22333222 22235788999999997778888899999999877653
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC----CeEEEEECCCCcceeeec--CcCCCceEEEEecC
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIP--AHKSDVNTVCFADE 194 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~ 194 (408)
.... .. ...+.+++++++++++++...+ +.|.+||..+++....+. .+...+.+++++ +
T Consensus 80 ~~~~--~~------------~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d-~ 144 (333)
T 2dg1_A 80 RPFV--SH------------KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-S 144 (333)
T ss_dssp EEEE--CS------------SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-T
T ss_pred EEee--CC------------CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC-C
Confidence 3221 11 1258999999999877776655 689999998776543332 244678999999 7
Q ss_pred CCCEEEEecC------CCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEE-EeecCCeEEEEeCCCCcCccc
Q 015371 195 TGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI-SNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 195 ~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~ 267 (408)
+++++++... .+.|..+|.. ..+ ...+......+..++|+|+++.|+ +.+.++.|.+||+........
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPD----FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTT----SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCC----CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence 8887776654 3456666632 222 223333445678999999998654 445678999999864110000
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
... ......+.++ .....++++++|+++++...++.|.+||. +++.+
T Consensus 220 ~~~-------------------------~~~~~~~~~~-------~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 220 PFG-------------------------ATIPYYFTGH-------EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI 266 (333)
T ss_dssp EEE-------------------------EEEEEECCSS-------SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred ccc-------------------------ceEEEecCCC-------CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEE
Confidence 000 0000001111 01223467788998888778899999998 57777
Q ss_pred EEEccCCC------CeeeeeEeCCCCeEEeecCC
Q 015371 348 AKLDFHNA------PVRDCCWHPIYPMLISSSWD 375 (408)
Q Consensus 348 ~~~~~~~~------~v~~~~~~~~~~~l~s~~~d 375 (408)
..+..+.. .+.+++|+|+++.|+.++.+
T Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 77754433 68999999998766655544
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=1e-17 Score=138.12 Aligned_cols=245 Identities=13% Similarity=0.153 Sum_probs=171.8
Q ss_pred eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE-cCCCCEEEEEec-C
Q 015371 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF-STDGQELVAAGS-D 162 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~-d 162 (408)
-..+.+++++++++++++...++.|.+||...... ..+... .....+...+..+++ .+++..+++... +
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~---~~~~~~------~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK---FQFGEC------GKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE---EEECCB------SSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE---EEeccc------CCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 34688999999999888888899999999874322 111110 011122335889999 467766655533 7
Q ss_pred CeEEEEECCCCcceeeec-CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee--cccCCeEEEEec
Q 015371 163 NFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDSR 239 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 239 (408)
+.|.+|| .+++.+..+. .+...+.++++. ++++++++...++.|.+||. .+.....+. .+...+..++++
T Consensus 100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-----NGNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp CEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-----TSCEEEEEECTTTCSSEEEEEEC
T ss_pred CEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcC-----CCCEEEEeCCCCccCCcEEEEEC
Confidence 8999999 5666666553 244578999999 78888888888899999995 334444443 344578999999
Q ss_pred CCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecc
Q 015371 240 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 319 (408)
Q Consensus 240 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (408)
++++++++...++.|++||... ..+..+...... .....++
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~----~~p~~i~ 213 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGIT----NYPIGVG 213 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTS----CSEEEEE
T ss_pred CCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCcc----CCCcEEE
Confidence 9999888878899999999754 222222221100 1123446
Q ss_pred ccCCCcEEEEeeCCC-eEEEEECCCCceeEEEccCCC--CeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 320 YSTAQKYIYTGSSDN-SVYIYDLVSGAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 320 ~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+|+++++ +.|+.|++|++...
T Consensus 214 ~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 214 INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 788899888887776 9999995 6777777765433 4779999999987777 57999999998653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=9.3e-18 Score=138.40 Aligned_cols=247 Identities=12% Similarity=0.122 Sum_probs=171.0
Q ss_pred ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc---ccceeeEEEEEe-CCCCceEEEeec-CcEEEE
Q 015371 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET---KALRWTITDTSL-SPDQRFLVYASI-CAIVNI 111 (408)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~~l~~~~~-dg~i~~ 111 (408)
.++-..+.+++++++++++++...++.|.+|+.+ +......... ..+...+..+++ .++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4666789999999999988888889999999977 4343333211 123346889999 567776666543 789999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec--CcCCCceEE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTV 189 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l 189 (408)
|+.. ++... .+.. .+...+..++++++|+.+++...++.|.+||.. ++....+. .+...+..+
T Consensus 105 ~d~~-g~~~~--~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 105 YNQY-GQFVR--KFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp ECTT-SCEEE--EECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred ECCC-CcEEE--EecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence 9943 43321 1111 011247899999999877777778999999964 55555553 344568999
Q ss_pred EEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc--cCCeEEEEecCCCCeEEEeecCC-eEEEEeCCCCcCcc
Q 015371 190 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSNT 266 (408)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~ 266 (408)
+++ ++++++++...++.|++||. .+..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 170 ~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g----- 238 (286)
T 1q7f_A 170 VVN-DKQEIFISDNRAHCVKVFNY-----EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----- 238 (286)
T ss_dssp EEC-SSSEEEEEEGGGTEEEEEET-----TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-----
T ss_pred EEC-CCCCEEEEECCCCEEEEEcC-----CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-----
Confidence 999 78888888888999999995 33444444333 36788999999999888887776 999999643
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCc
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 345 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 345 (408)
+.+..+..+.... ....++++|+|+++++ +.|+.|++|++....
T Consensus 239 ------------------------------~~~~~~~~~~~~~----~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 239 ------------------------------QLISALESKVKHA----QCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp ------------------------------CEEEEEEESSCCS----CEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred ------------------------------CEEEEEcccCCCC----cceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 2233333222111 1234567788987777 579999999986543
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=1.4e-19 Score=156.85 Aligned_cols=232 Identities=9% Similarity=-0.001 Sum_probs=147.3
Q ss_pred ceeeEecCCccEEEeecCc---eEEEEEEec--CceeeecccCce-eEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEE
Q 015371 4 GREVNYSGRGRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 77 (408)
..+++|||||++++..... .....++.. ....+..+...+ ..+.|+|||++|+.++.++.|++|++.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 3567899999986653221 122333332 233444444443 3488999999999999999999999988754322
Q ss_pred ecccccceeeEEE-------------------EEeCCCCceEEEe-----ecCcEEEEEECCCCceeeeeeeeeeeeeee
Q 015371 78 DIETKALRWTITD-------------------TSLSPDQRFLVYA-----SICAIVNIVDVGSSARESLANVTIHKGLDF 133 (408)
Q Consensus 78 ~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (408)
...... .... +.|+|+++.++.. ..+..|.+||+.+++...+.. ..
T Consensus 118 ~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---~~---- 187 (396)
T 3c5m_A 118 YTVDEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---DT---- 187 (396)
T ss_dssp EECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---ES----
T ss_pred Eecccc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---CC----
Confidence 211111 1111 4678888877755 356789999998876543321 11
Q ss_pred ecCCCCCccceEEEEEcC-CCCEEEEEecC------CeEEEEECCCCcceeeecCc-CCCceEEEEecCCCCEEEEecCC
Q 015371 134 SADGDEDEFGIFSVKFST-DGQELVAAGSD------NFIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDD 205 (408)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~~~~~d 205 (408)
..+..+.|+| +++.|+..+.+ ..|++||+..++........ ...+..++|+ |+++.|+.++.+
T Consensus 188 --------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~ 258 (396)
T 3c5m_A 188 --------AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI-PDGSAMAYVSYF 258 (396)
T ss_dssp --------SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC-TTSSCEEEEEEE
T ss_pred --------cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC-CCCCEEEEEecC
Confidence 1488899999 78877776543 46899998766543333311 2357788999 788876666443
Q ss_pred -----CeEEEEeccccccCCccceeeecccCCeEEEEecC-CCCeEEEee----------------cCCeEEEEeCCC
Q 015371 206 -----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNG----------------KDQTTKLWDIRK 261 (408)
Q Consensus 206 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~d~~i~iwd~~~ 261 (408)
+.|.+||+. .++... +.... ... +.|+| +|+++++++ .+..|++||+.+
T Consensus 259 ~~~~~~~l~~~d~~----~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 259 KGQTDRVIYKANPE----TLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp TTTCCEEEEEECTT----TCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred CCCccceEEEEECC----CCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 459999974 333222 21111 233 88999 999888754 246799999876
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.84 E-value=2.6e-17 Score=153.09 Aligned_cols=284 Identities=9% Similarity=0.020 Sum_probs=185.9
Q ss_pred CCCCeEEEEeCCC-c--EEEEEc--CCCeeEEEecc----cccceeeEEEEEeCCCCceEEEeecCc-----EEEEEECC
Q 015371 50 NDGSFFVAASQES-N--IKVYNV--DKNWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVG 115 (408)
Q Consensus 50 ~~~~~l~t~~~dg-~--i~iw~~--~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~w~~~ 115 (408)
|+|++++....++ . -.+|-. ..+.. ..++. ...+...+..++|||||++|+.+..++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 8898887654332 1 134444 33322 22211 223444688999999999999776543 89999999
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe----------------EEEEECCCCcce--e
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF----------------IYVYDLQANKCS--L 177 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~--~ 177 (408)
+++...... ... .+..++|+|||+.|+.++.++. |++|++.+++.. .
T Consensus 160 tg~~~~~~~---~~~------------~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~ 224 (710)
T 2xdw_A 160 GAKELPDVL---ERV------------KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL 224 (710)
T ss_dssp TTEEEEEEE---EEE------------CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE
T ss_pred CCCCCcccc---cCc------------ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE
Confidence 887643211 111 2567999999999999887765 999999887632 2
Q ss_pred eec--CcCCCceEEEEecCCCCEEEEecC-----CCeEEEEeccccc---cCCccceeeecccCCeEEEEecCCCCeEEE
Q 015371 178 RIP--AHKSDVNTVCFADETGHLIFSGSD-----DSLCKVWDRRCFI---SKGRANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 178 ~~~--~~~~~v~~l~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
.+. .|...+..+.|+ +++++|+.++. +..|.+||+.... ........+..+...+.. .|+|+|+.|+.
T Consensus 225 v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~ 302 (710)
T 2xdw_A 225 CAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTF 302 (710)
T ss_dssp EECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred EeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEE
Confidence 222 345567899999 88888887664 5689999975200 011135556666666655 48888988776
Q ss_pred eecC----CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC
Q 015371 248 NGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323 (408)
Q Consensus 248 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (408)
.+.. +.|.+||+.+... .....+..+..... +..+.++++
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~----~~~~~~~~~ 346 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKDV----LEWVACVRS 346 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSCE----EEEEEEETT
T ss_pred EECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCCe----EEEEEEEcC
Confidence 6653 3599999876310 01122222221111 122345566
Q ss_pred CcEEEEeeCCCe--EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEe----ecCCCcEEEEeeCCCC
Q 015371 324 QKYIYTGSSDNS--VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS----SSWDCNIVRWEIPGIG 387 (408)
Q Consensus 324 ~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~dg~v~iw~~~~~~ 387 (408)
+.++++...++. |++||+.+++.+..+..+.+.+..++++|+++.++. ....+.|+.||+.+++
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 788888888884 677787788888888888888999999999885552 2345899999998765
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.2e-17 Score=140.45 Aligned_cols=255 Identities=11% Similarity=0.091 Sum_probs=172.9
Q ss_pred cCceeEEEEcCCCCeEEEEeCC------------------------CcEEEEEcCCCeeEEEecccccceeeEEEEEeCC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQE------------------------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 95 (408)
-+.+.+++++|+|+++++...+ +.|.+||..+++...... ..+-..+..++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--KNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--TTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--CCccCCceEEEECC
Confidence 4679999999999999888777 479999998776544322 22333688999999
Q ss_pred CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEe-cCCeEEEEECCCC
Q 015371 96 DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAG-SDNFIYVYDLQAN 173 (408)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~ 173 (408)
+++++++...++.|++|+...... ....+.... .......+...+..++++| ++..+++.+ .++.|++|+ .++
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~---~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEG-PLLILGRSM---QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSC-CSEEESBTT---BCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred CCCEEEEECCCCEEEEEeCCCCeE-EEEEecccC---CCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 999888888889999999865421 111111000 0000112233588999999 787777765 589999999 567
Q ss_pred cceeeecC----------cCCCceEEEEecCC-CCEEEEecCCCeEEEEeccccccCCccceeee--cccCCeEEEEecC
Q 015371 174 KCSLRIPA----------HKSDVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDSRR 240 (408)
Q Consensus 174 ~~~~~~~~----------~~~~v~~l~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~ 240 (408)
+.+..+.. +-.....++++ ++ +.++++...++.|++||.. .++.+..+. .+...+..++++|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d-~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALV-PHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEEEET
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEE-CCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceeeecC
Confidence 66666632 22348899999 55 8888888899999999963 466666553 4556788999998
Q ss_pred ------CCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 241 ------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 241 ------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+++..++...+..|++||..+. +.+..+..... ....
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g----------------------------------~~~~~~~~~~~---~~~~ 293 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSSG----------------------------------EIIDVFKPVRK---HFDM 293 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTTC----------------------------------CEEEEECCSSS---CCSS
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCCC----------------------------------eEEEEEcCCCC---ccCC
Confidence 3333333344558999998763 33333321100 0122
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
...++++|+|.++++...++.|++|++..
T Consensus 294 p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 34557888998888888899999999753
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=1.3e-16 Score=142.12 Aligned_cols=278 Identities=12% Similarity=0.037 Sum_probs=188.7
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC--CCceeeeeeeee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG--SSARESLANVTI 127 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~--~~~~~~~~~~~~ 127 (408)
|.+.++++...+++|.++|..+++.+..+.... .+..+.|+||++++++++.++.|.+||+. +.+. ...+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--v~~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--eEEEec
Confidence 445667777888999999999986665543322 46689999999999999999999999996 4433 333332
Q ss_pred eeeeeeecCCCCCccceEEEEEc----CCCCEEEEEec-CCeEEEEECCCCcceeeecCc-----------CCCceEEEE
Q 015371 128 HKGLDFSADGDEDEFGIFSVKFS----TDGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-----------KSDVNTVCF 191 (408)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~l~~ 191 (408)
.. ....++|+ |||+++++++. ++.|.++|..+.+.+..+... ...+..+..
T Consensus 239 G~-------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 239 GS-------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp CS-------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CC-------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 22 36789999 69999988876 589999999999888776421 125778888
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCcccccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~ 270 (408)
++....+++....+|.|.++|.... ....+..+ ........+.|+|++++++++. .++.|.++|+.+.+
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~--~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k------- 375 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDL--NNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK------- 375 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCS--SEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-------
T ss_pred cCCCCEEEEEecCCCeEEEEecCCC--ccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-------
Confidence 8555666777778899999996411 11111222 2334567889999999887665 57889999998732
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeec-ccceeeEEEEEeeccccCC-CcEEEEee-CCCeEEEEECCC----
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTA-QKYIYTGS-SDNSVYIYDLVS---- 343 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~-~~~l~~~~-~dg~i~vwd~~~---- 343 (408)
.+..+.. ...........+ ++|+ +...+++. .++.|.++|..+
T Consensus 376 ---------------------------l~~~i~vgg~~Phpg~g~~~---~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 376 ---------------------------LVAIEDTGGQTPHPGRGANF---VHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp ---------------------------EEEEEECSSSSBCCTTCEEE---EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred ---------------------------EEEEEeccCcCCCCccceee---ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 2222211 000000000011 3455 44444443 468999999987
Q ss_pred ---CceeEEEccCCCCeeeeeEeCCCCeEEeecC-------CCcEEEEeeCCC
Q 015371 344 ---GAQVAKLDFHNAPVRDCCWHPIYPMLISSSW-------DCNIVRWEIPGI 386 (408)
Q Consensus 344 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg~v~iw~~~~~ 386 (408)
.+.+.++......-..+..+|++++|..... .+.|.++|+.+.
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6678888755444345788999998877552 469999999876
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=1.5e-17 Score=140.46 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=158.1
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 84 (408)
.+++|++++..++........+.+.......+.++...+.+++|+|+|++++++..++.|.+||.++++...... .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~ 85 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---SH 85 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---CS
T ss_pred ceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee---CC
Confidence 578888888755433222222233444445677777888999999999988888888999999988764433221 12
Q ss_pred eeeEEEEEeCCCCceEEEeecC----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 85 RWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
...+.+++++|+++++++...+ +.|.+||..++.......... +...+.+++++|+|+.+++..
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS------------TAYCIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS------------SCCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc------------cCCcccceEECCCCCEEEEec
Confidence 3469999999999987777666 689999988765432211000 112588999999998776654
Q ss_pred c------CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE-EEecCCCeEEEEeccccccCCccce--------e
Q 015371 161 S------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANG--------V 225 (408)
Q Consensus 161 ~------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~--------~ 225 (408)
. .+.|+.+|..+++... +......+..++|+ ++++.+ ++.+.++.|.+||++. .+.... .
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~---~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALS-TDEKVLWVTETTANRLHRIALED---DGVTIQPFGATIPYY 228 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT---TSSSEEEEEEEEEEE
T ss_pred cccccCCCceEEEEeCCCCEEEE-eecCCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecC---CCcCcccccceEEEe
Confidence 3 3567777766554333 32334457899999 777744 5556688999999741 122111 1
Q ss_pred eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 226 LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 226 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
+.++ ..+..++++++|+++++...++.|.+||..
T Consensus 229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 1122 367889999999988887778899999974
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.82 E-value=1.4e-17 Score=154.44 Aligned_cols=281 Identities=11% Similarity=0.010 Sum_probs=178.7
Q ss_pred cCCCCeEEEEeCCC---cEEEEEcC--CCeeEEEecc----cccceeeEEEEEeCCCCceEEEe-----ecCcEEEEEEC
Q 015371 49 SNDGSFFVAASQES---NIKVYNVD--KNWKIQKDIE----TKALRWTITDTSLSPDQRFLVYA-----SICAIVNIVDV 114 (408)
Q Consensus 49 s~~~~~l~t~~~dg---~i~iw~~~--~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~~w~~ 114 (408)
+|+|++++....++ .-.+|-.. .+. ...+.. ..+|...+..++|||||++||.+ +.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 48899888776543 34455543 332 222222 12345579999999999999944 33468999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe-------------EEEEECCCCcc----ee
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF-------------IYVYDLQANKC----SL 177 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~----~~ 177 (408)
.+++.......... ....++|+|||+.|+.++.+.. |++|++.+++. +.
T Consensus 155 ~tg~~~~~~~~~~~--------------~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 155 DSGEWSKVDVIEGG--------------KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp TTCCBCSSCCBSCC--------------TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CCCCCcCCcccCcc--------------cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 98875311111100 1257899999999999988765 99999988763 22
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCCC----eEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee---c
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDDS----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG---K 250 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~ 250 (408)
....+...+..+.|+ +++++|+.++.++ .|.+|+.. .+ ....+..+...+....+ ++|++++... .
T Consensus 221 ~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~ 293 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAP 293 (695)
T ss_dssp CCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTCT
T ss_pred ecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCCC
Confidence 233455678899999 8888887777665 56666532 22 34455556666666666 5666444433 2
Q ss_pred CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe
Q 015371 251 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 330 (408)
Q Consensus 251 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 330 (408)
++.|.+||+.+... .....+..+.....+ ..++++ ++.++++.
T Consensus 294 ~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~l----~~~~~~-~~~lv~~~ 336 (695)
T 2bkl_A 294 RQRVFEVDPAKPAR--------------------------------ASWKEIVPEDSSASL----LSVSIV-GGHLSLEY 336 (695)
T ss_dssp TCEEEEEBTTBCSG--------------------------------GGCEEEECCCSSCEE----EEEEEE-TTEEEEEE
T ss_pred CCEEEEEeCCCCCc--------------------------------cCCeEEecCCCCCeE----EEEEEE-CCEEEEEE
Confidence 57899999876321 001122211111111 122344 57788899
Q ss_pred eCCCeEEEEECC-CCceeEEEccC-CCCeeeeeEeCCCCeEE----eecCCCcEEEEeeCCCCC
Q 015371 331 SSDNSVYIYDLV-SGAQVAKLDFH-NAPVRDCCWHPIYPMLI----SSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 331 ~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~----s~~~dg~v~iw~~~~~~~ 388 (408)
..|+..++|.+. +++....+..+ .+.|..++++|+++.|+ +....+.|++||+.+++.
T Consensus 337 ~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 337 LKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 999988877654 46666666655 66788899999998666 334568999999987653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.82 E-value=1.7e-17 Score=154.23 Aligned_cols=250 Identities=15% Similarity=0.138 Sum_probs=163.4
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCC-----cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE----
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQES-----NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---- 108 (408)
+|...+..++|||||++||.+..++ .|++||+.+++....... ...+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~----~~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc----CcccceEEEEeCCCEEEEEEECCccccc
Confidence 3445688999999999999875543 899999999865543221 113567999999999999887765
Q ss_pred ------------EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-----CCeEEEEECC
Q 015371 109 ------------VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQ 171 (408)
Q Consensus 109 ------------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~ 171 (408)
|++|++.++.......... ..+...+..+.|+|||++|+.++. +..|++||+.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF----------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC----------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 9999998765321111111 112224778999999999988775 5689999997
Q ss_pred C------Cc-ceeeecCcCCCceEEEEecCCCCEEEEecC----CCeEEEEeccccccCCccceeeecccC--CeEEEEe
Q 015371 172 A------NK-CSLRIPAHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDS 238 (408)
Q Consensus 172 ~------~~-~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~ 238 (408)
+ +. ....+..+...+.. .|+ +++..|+..+. ++.|.+||+... .......+..|.. .+..+.|
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~~~~~~~ 343 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDP--EESKWKVLVPEHEKDVLEWVAC 343 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTSC--CGGGCEEEECCCSSCEEEEEEE
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCCCC--CcccceeccCCCCCCeEEEEEE
Confidence 6 43 34555556655555 477 56666555443 236999997521 1112344555544 6778899
Q ss_pred cCCCCeEEEeecCCe--EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEe
Q 015371 239 RRDGRYFISNGKDQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 316 (408)
Q Consensus 239 ~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
++++.++++...++. |.+||+.+ ++.+..+..+. ..+.
T Consensus 344 ~~~~~lv~~~~~~g~~~l~~~~~~~----------------------------------g~~~~~l~~~~------~~v~ 383 (710)
T 2xdw_A 344 VRSNFLVLCYLHDVKNTLQLHDLAT----------------------------------GALLKIFPLEV------GSVV 383 (710)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTT----------------------------------CCEEEEECCCS------SEEE
T ss_pred EcCCEEEEEEEECCEEEEEEEECCC----------------------------------CCEEEecCCCC------ceEE
Confidence 887888888888885 55566644 12233333332 1223
Q ss_pred eccccCCCcEEEEee----CCCeEEEEECCCCc
Q 015371 317 SPEYSTAQKYIYTGS----SDNSVYIYDLVSGA 345 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~ 345 (408)
.+.++|+++.++... ..+.|+.||+.+++
T Consensus 384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 345677787665332 35789999998877
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.81 E-value=1.3e-17 Score=154.71 Aligned_cols=250 Identities=12% Similarity=0.026 Sum_probs=160.9
Q ss_pred cccCceeEEEEcCCCCeEEE-----EeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE----
Q 015371 38 GMNSRVYTSQFSNDGSFFVA-----ASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---- 108 (408)
+|...+..++|||||++||. |+.+.+|++||+.+++..... ..... ....++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 45567999999999999994 344568999999988643110 11111 1257899999999999988765
Q ss_pred ---------EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC----eEEEEECCCCcc
Q 015371 109 ---------VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN----FIYVYDLQANKC 175 (408)
Q Consensus 109 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~ 175 (408)
|++|++.++.......... ..+...+..+.|+|||++|+.++.++ .|++++..+++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~- 263 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHER----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD- 263 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECC----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-
T ss_pred cccCCCCCEEEEEECCCCchhceEEEec----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-
Confidence 9999998776321111111 11223578999999999998887766 78888776654
Q ss_pred eeeecCcCCCceEEEEecCCCCEEEEec---CCCeEEEEeccccccCCcc--ceeeecc--cCCeEEEEecCCCCeEEEe
Q 015371 176 SLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRA--NGVLMGH--LEGITFIDSRRDGRYFISN 248 (408)
Q Consensus 176 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~l~~~ 248 (408)
...+..+...+....+. .++ +++.+. .++.|.+||+. .+.. ...+..+ ...+..++++ ++.++++.
T Consensus 264 ~~~l~~~~~~~~~~~~~-~g~-l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~ 336 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHAW-KDR-FYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEY 336 (695)
T ss_dssp CEEEEECSSCCEEEEEE-TTE-EEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEE
T ss_pred eEEeecCCCceEEEEec-CCc-EEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEE
Confidence 34444455566666664 444 555554 35789999975 2221 2333333 4457888888 67788888
Q ss_pred ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEE
Q 015371 249 GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 328 (408)
Q Consensus 249 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 328 (408)
..|+..++|.+... +.....+..+. ...+..++++|+++.++
T Consensus 337 ~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~-----~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 337 LKDATSEVRVATLK---------------------------------GKPVRTVQLPG-----VGAASNLMGLEDLDDAY 378 (695)
T ss_dssp EETTEEEEEEEETT---------------------------------CCEEEECCCSS-----SSEECCCBSCTTCSEEE
T ss_pred EECCEEEEEEEeCC---------------------------------CCeeEEecCCC-----CeEEEEeecCCCCCEEE
Confidence 88998888865420 11122222111 01233456778887776
Q ss_pred Eee----CCCeEEEEECCCCce
Q 015371 329 TGS----SDNSVYIYDLVSGAQ 346 (408)
Q Consensus 329 ~~~----~dg~i~vwd~~~~~~ 346 (408)
... ..+.|++||+.+++.
T Consensus 379 ~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 379 YVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTEEEEEEEEETTTCCE
T ss_pred EEEcCCCCCCEEEEEECCCCcE
Confidence 332 357899999988764
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=3.1e-15 Score=124.16 Aligned_cols=283 Identities=10% Similarity=0.060 Sum_probs=188.9
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
+..+...+.+++++++|+++++...++.|.+|+.. +. ...... ......+.++++++++..+++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPL-PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecC-CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 34456789999999999988777667899999987 43 222221 1122468999999999988877768889999876
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceee-ecCcCCCceEEEEecC
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADE 194 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~ 194 (408)
++.... ... .....+..+++.+++..+++...++.|.+||. +++.... .......+..+++. +
T Consensus 87 -g~~~~~-~~~------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~ 150 (299)
T 2z2n_A 87 -GIIKEY-TLP------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-S 150 (299)
T ss_dssp -SCEEEE-ECS------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-T
T ss_pred -CcEEEE-eCC------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-C
Confidence 322111 110 01125889999999987777666889999998 5543322 23345678999998 7
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
+++++++...++.|..||. .++.... .......+..+++.++++++++...++.|..||. +..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------- 214 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-----SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------- 214 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-----TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC----------
T ss_pred CCCEEEEeCCCCEEEEEcC-----CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc----------
Confidence 8888887777889999995 2222221 2334456889999999997777666888999997 421
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE--c
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL--D 351 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~ 351 (408)
+..+...... .....++++++|++.++...++.|..||. +++. ..+ .
T Consensus 215 -------------------------~~~~~~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~ 263 (299)
T 2z2n_A 215 -------------------------ITEFKIPTPN----ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ 263 (299)
T ss_dssp -------------------------EEEEECSSTT----CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS
T ss_pred -------------------------EEEEECCCCC----CCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC
Confidence 1111100000 11234467778887666667889999998 4543 333 3
Q ss_pred cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 352 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.+...+.++++ +++.++++.+ .+.|..++..+.
T Consensus 264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 44567899999 8888777665 567777777653
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.80 E-value=5.1e-15 Score=131.99 Aligned_cols=329 Identities=10% Similarity=0.022 Sum_probs=203.5
Q ss_pred CCccEEEeecCceEEEEEEecCceeee--cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcC--CCeeEEEeccccccee
Q 015371 11 GRGRFSAADSCHVLSRYLPVNGPWKVD--GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD--KNWKIQKDIETKALRW 86 (408)
Q Consensus 11 ~dg~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~ 86 (408)
|++.+.++........+++......+. .....+..+.|||||+++++++.|+.|.+||+. +.+.+..... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~--- 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GS--- 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CS---
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CC---
Confidence 334455555555555566654432221 223457799999999999999999999999995 6555544332 22
Q ss_pred eEEEEEeC----CCCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCC-CCC-ccceEEEEEcCCCCEEEEE
Q 015371 87 TITDTSLS----PDQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADG-DED-EFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 87 ~v~~~~~~----~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~l~~~ 159 (408)
....++|+ |||+++++++. ++.+.++|..+.+........... ... ..| ...+..+..++++..+++.
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-----~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-----YDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-----TTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-----cccccccCCCceEEEEEcCCCCEEEEE
Confidence 36789999 69999887765 589999998887654332221110 000 000 1147788888876655544
Q ss_pred -ecCCeEEEEECCCCccee--eecCcCCCceEEEEecCCCCEEEEec-CCCeEEEEeccccccCCccceeeec-----cc
Q 015371 160 -GSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMG-----HL 230 (408)
Q Consensus 160 -~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-----~~ 230 (408)
...|.|.++|..+.+... .+. ......++.|+ +++++++++. .++.|.++|+. +++....+.- |.
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCC
T ss_pred ecCCCeEEEEecCCCccceeeeee-ccccccCceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCC
Confidence 456999999987654222 222 34456788999 7788766554 67899999975 4444444332 33
Q ss_pred CCeEEEEecCCCCeE-EEee-cCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccce
Q 015371 231 EGITFIDSRRDGRYF-ISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 308 (408)
Q Consensus 231 ~~i~~~~~~~~~~~l-~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
+.-..+ ++|++..+ +++. .++.|.++|......... ..+.+..+......
T Consensus 390 g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~---------------------------~~kvv~~i~~~g~g 441 (567)
T 1qks_A 390 GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN---------------------------AWKILDSFPALGGG 441 (567)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT---------------------------BTSEEEEEECSCSC
T ss_pred ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc---------------------------cCEEEEEEecCCCC
Confidence 222222 57875544 4443 468999999876221100 01233444332210
Q ss_pred eeEEEEEeeccccCCCcEEEEeeC-------CCeEEEEECCCC-----ce-eEEEc--------cCCCCeeeeeEeCCCC
Q 015371 309 RTLIRCYFSPEYSTAQKYIYTGSS-------DNSVYIYDLVSG-----AQ-VAKLD--------FHNAPVRDCCWHPIYP 367 (408)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~-----~~-~~~~~--------~~~~~v~~~~~~~~~~ 367 (408)
...+..+|+++++.+... .++|.++|+.+. .. ...+. .....+..+.|+|+|+
T Consensus 442 ------~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 515 (567)
T 1qks_A 442 ------SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT 515 (567)
T ss_dssp ------CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred ------CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence 112246889999988663 358999999876 21 13332 1235788999999999
Q ss_pred eEEeec-----CCCcEEEEeeCCCCC
Q 015371 368 MLISSS-----WDCNIVRWEIPGIGE 388 (408)
Q Consensus 368 ~l~s~~-----~dg~v~iw~~~~~~~ 388 (408)
.+..+. .++.|.|+|..+.+.
T Consensus 516 ~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 516 EVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEEEEeecCCCCCCcEEEEECCCceE
Confidence 666552 379999999888654
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.80 E-value=2.7e-16 Score=130.29 Aligned_cols=248 Identities=9% Similarity=0.062 Sum_probs=167.9
Q ss_pred eeeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEE
Q 015371 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 112 (408)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...... +...+.+++++|+++++++...++.|.+|
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~---~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH---PSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES---SCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC---CCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 44556667788999999998 7888888999999998876 332222 23468999999999988777667899999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE----Ee-------------cCCeEEEEECCCCcc
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA----AG-------------SDNFIYVYDLQANKC 175 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~ 175 (408)
|..+++........... ....+..++++|+|+++++ ++ ..+.|+.++.. ++
T Consensus 96 d~~~g~~~~~~~~~~~~----------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~- 163 (296)
T 3e5z_A 96 REPGGEWESIADSFEGK----------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT- 163 (296)
T ss_dssp CSTTCCEEEEECEETTE----------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-
T ss_pred cCCCCcEEEEeeccCCC----------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-
Confidence 99777654332111000 0113678999999987776 33 13467777765 44
Q ss_pred eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcc---ceeeecccCCeEEEEecCCCCeEEEeecCC
Q 015371 176 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA---NGVLMGHLEGITFIDSRRDGRYFISNGKDQ 252 (408)
Q Consensus 176 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 252 (408)
...+..+......++|+ ++++.+++.+.++.|.+||+.. .+.. ...+..+...+..++++++|+++++. ++
T Consensus 164 ~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~ 237 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD 237 (296)
T ss_dssp EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC
Confidence 33444556677899999 8888888888889999999741 2222 22223345567789999999866665 78
Q ss_pred eEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccc-cCCCcEEEEee
Q 015371 253 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY-STAQKYIYTGS 331 (408)
Q Consensus 253 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~ 331 (408)
.|.+||... +.+..+..+.. ..+++| +|+++.|++++
T Consensus 238 ~v~~~~~~g-----------------------------------~~~~~~~~~~~-------~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 238 GVHVLTPDG-----------------------------------DELGRVLTPQT-------TSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp EEEEECTTS-----------------------------------CEEEEEECSSC-------CCEEEEESTTSCEEEEEE
T ss_pred eEEEECCCC-----------------------------------CEEEEEECCCC-------ceeEEEECCCCCEEEEEc
Confidence 899999753 33344443332 122245 57888888888
Q ss_pred CCCeEEEEECCCCcee
Q 015371 332 SDNSVYIYDLVSGAQV 347 (408)
Q Consensus 332 ~dg~i~vwd~~~~~~~ 347 (408)
.+ .+..++.++.+..
T Consensus 276 ~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 276 ST-EFWSIETNVRGLE 290 (296)
T ss_dssp TT-EEEEEECSCCBCC
T ss_pred CC-eEEEEEccccccc
Confidence 76 4666677666543
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=2.6e-16 Score=133.61 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=123.4
Q ss_pred CceeEEEEcCCCCeEEEEeCC---C--cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC---------
Q 015371 41 SRVYTSQFSNDGSFFVAASQE---S--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--------- 106 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 106 (408)
..+..++|||||++||.++.+ + .|.+|++.+++.... .. ... +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-LE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE-EE---ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE-Ec---CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 568899999999999987654 2 378888877644322 11 122 8899999999999988642
Q ss_pred ------------------cEEEEEECCCCce-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC----
Q 015371 107 ------------------AIVNIVDVGSSAR-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN---- 163 (408)
Q Consensus 107 ------------------g~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---- 163 (408)
..|.+||+.+++. ..+.. . .+..+.|+|+| .++++..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~----------------~~~~~~~spdg-~~~~~~~~~~~~~ 195 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P----------------RFSSGIWHRDK-IVVNVPHREIIPQ 195 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E----------------TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C----------------CcccccCCCCe-EEEEEeccccccc
Confidence 5788999987765 22221 1 27788999999 777775432
Q ss_pred -----eEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCC--------CeEEEEeccccccCCccceeeeccc
Q 015371 164 -----FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 164 -----~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
.|+++| +++. ..+..+ ..+..+ + |+++.|+.++.+ ..|.+|| .++.......+.
T Consensus 196 ~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d------~~~~~~l~~~~~ 262 (347)
T 2gop_A 196 YFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD------GKEVMGILDEVD 262 (347)
T ss_dssp SSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC------SSCEEESSTTCC
T ss_pred ccccccEEEeC--CCce-EEeccC-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC------CCceEeccccCC
Confidence 455556 5543 334334 444444 6 788877766643 3677777 223333334556
Q ss_pred CCeEE-EEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 231 EGITF-IDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 231 ~~i~~-~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
..+.. +.|+ ++ ++++++.++.+++| +.+
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred cccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 67776 8999 88 88899999999999 763
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=6.6e-16 Score=127.91 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=159.3
Q ss_pred eEEEEEeCCCCc-eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeE
Q 015371 87 TITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 165 (408)
Q Consensus 87 ~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 165 (408)
...+++|+|+++ .++++..++.|..|+..++ ... +.... ..+.+++++++|+++++...++.|
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~---~~~~~------------~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSP---EMHPS------------HHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEE---EESSC------------SSEEEEEECTTCCEEEEETTTTEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEE---EECCC------------CCcceeeECCCCcEEEEecCCCeE
Confidence 467899999998 6777888899999999876 322 11111 258899999999977776667899
Q ss_pred EEEECCCCcceeeecC----cCCCceEEEEecCCCCEEEE----ecC-------------CCeEEEEeccccccCCccce
Q 015371 166 YVYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFS----GSD-------------DSLCKVWDRRCFISKGRANG 224 (408)
Q Consensus 166 ~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~ 224 (408)
.+||..+++....... ....+..++++ ++++++++ |+. .+.|..++. . ....
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----~-g~~~ 165 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----D-GTLS 165 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----T-SCEE
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECC-----C-CCEE
Confidence 9999988775433321 12356789999 78888887 331 345555553 2 2334
Q ss_pred eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeec
Q 015371 225 VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 304 (408)
Q Consensus 225 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
.+..+......++|+|+++.+++.+.++.|.+||+....... .....+..
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------------------------------~~~~~~~~ 215 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------------------------------YQGVHFTV 215 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------------------------------EEEEEECC
T ss_pred EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------------------------------CCCeEeeC
Confidence 445566778899999999988777778999999986210000 00011100
Q ss_pred ccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeE-eCCCCeEEeecCCCcEEEEee
Q 015371 305 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW-HPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~v~iw~~ 383 (408)
.. .....++++++|++.++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|+.++.++ +.-++.
T Consensus 216 ~~------~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~ 284 (296)
T 3e5z_A 216 EP------GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIET 284 (296)
T ss_dssp SS------SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEEC
T ss_pred CC------CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEc
Confidence 11 111234677889866666 7889999975 888888887777 999999 58888888877663 334444
Q ss_pred CC
Q 015371 384 PG 385 (408)
Q Consensus 384 ~~ 385 (408)
.+
T Consensus 285 ~~ 286 (296)
T 3e5z_A 285 NV 286 (296)
T ss_dssp SC
T ss_pred cc
Confidence 33
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.77 E-value=2.8e-16 Score=128.44 Aligned_cols=242 Identities=7% Similarity=-0.013 Sum_probs=161.2
Q ss_pred eEEEEEeCCCCceEE-EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeE
Q 015371 87 TITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 165 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 165 (408)
...+++++++++.++ +...++.|.+|+..+....... . . ....+.+++++++++.+++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~-~------------~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-F-N------------GLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-C-C------------SCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-e-C------------CcCCcceeEECCCCCEEEEcC-CCEE
Confidence 578899999998766 4467889999987654332111 0 0 111477899999998555544 8899
Q ss_pred EEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeE
Q 015371 166 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 245 (408)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 245 (408)
.+||................+..+++. ++++++++...++.|.+|+.. ..............+..++++++++++
T Consensus 90 ~~~d~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp EEECTTCSCCEECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred EEEeCCCceEeeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCCCEE
Confidence 999987654332222233578899999 788888887788999999843 222222122233467889999999977
Q ss_pred EEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCc
Q 015371 246 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 325 (408)
Q Consensus 246 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (408)
++...++.|.+||...... ........ .....++++++|.
T Consensus 165 v~~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~------~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQ----------------------------------VVLPFTDI------TAPWGIAVDEAGT 204 (270)
T ss_dssp EEEGGGTEEEEECTTTCCE----------------------------------EECCCSSC------CSEEEEEECTTCC
T ss_pred EEECCCCEEEEEecCCCce----------------------------------EeecccCC------CCceEEEECCCCC
Confidence 7777788999999775211 00000000 1123346778887
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 326 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
++++...++.|.+||............+...+.+++++++|+++++...++.|+++++...+.
T Consensus 205 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 777777788999999866544332223335689999999999888888999999999876543
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.77 E-value=7.7e-15 Score=124.62 Aligned_cols=288 Identities=10% Similarity=-0.051 Sum_probs=182.3
Q ss_pred EEcCCCCeEEEEeC--CC---cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee----------cCcEEEE
Q 015371 47 QFSNDGSFFVAASQ--ES---NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNI 111 (408)
Q Consensus 47 ~~s~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~ 111 (408)
...|+++++.+... .. +|.++|..+++.+..+.... .. .++++||+++++++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~----~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC----CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 44578887777653 22 78999999887655433222 22 899999999999886 3678999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceee-ecCcCCCceE
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLR-IPAHKSDVNT 188 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~ 188 (408)
||..+.+............ + ........+.|+|||++|+++.. ++.|.++| .+++.+.. +... . +
T Consensus 102 iD~~t~~~~~~i~~~~~~~--~-----~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~ 169 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPR--F-----DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---C 169 (373)
T ss_pred EECCCCcEEEEEECCCccc--c-----ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---e
Confidence 9998765533222210000 0 00012457899999999999874 47899999 99988777 5432 1 2
Q ss_pred EEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-----cccCC-eEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 189 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLEG-ITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
+.+.|.....+++.+.||.+.++|. .++...... ....+ .....+.+++..++..+.++.+.+.|+...
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-----~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-----AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-----CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 4455455567778888999999995 222221111 11112 123455666655554457788999998652
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeeccc----ceeeEEEEEeeccccCCCcEEEEeeC------
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS------ 332 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~------ 332 (408)
.... +..+.... .............++|+++.+++...
T Consensus 245 ~~~v--------------------------------~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 245 GATN--------------------------------KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred cceE--------------------------------eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 1100 00110000 00000001112357888888877653
Q ss_pred ----CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEeec-CCCcEEEEeeCCCCCC
Q 015371 333 ----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 389 (408)
Q Consensus 333 ----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~v~iw~~~~~~~~ 389 (408)
.+.|.++|..+++.+.++.. ......++|+|||+ +++++. .++.|.++|+.+.+..
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 35799999999999998863 34688999999999 777776 5899999999887654
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.77 E-value=2.1e-14 Score=119.21 Aligned_cols=280 Identities=10% Similarity=0.020 Sum_probs=186.1
Q ss_pred cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCC
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 117 (408)
.....+.+++++++|+++++...++.|.+|+.. +... ... .......+.++++.++++.+++...++.|..+|.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE-VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE-CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 345678999999999988877778899999987 4322 221 12222468899999999877776667889999987 4
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee-eecCcCCCceEEEEecCCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~ 196 (408)
+.... .... ....+..+++.++++.+++...++.|..+|.. ++... .+......+..+++. +++
T Consensus 93 ~~~~~-~~~~------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~g 157 (300)
T 2qc5_A 93 GFTEY-PLPQ------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SDN 157 (300)
T ss_dssp CEEEE-ECSS------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred CeEEe-cCCC------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CCC
Confidence 43211 1110 01258899999999877776667899999987 55432 233345678999998 778
Q ss_pred CEEEEecCCCeEEEEeccccccCCccce-eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccc
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 275 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 275 (408)
++.++...++.|..+|.. +.... ....+...+..+.+.+++++.++....+.|..||... .
T Consensus 158 ~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~------------ 219 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E------------ 219 (300)
T ss_dssp SEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C------------
T ss_pred CEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c------------
Confidence 877777778899999852 22222 1223445688999999998777766677899998732 1
Q ss_pred cccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeE-EEccCC
Q 015371 276 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA-KLDFHN 354 (408)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~ 354 (408)
...+...... .....++++++|++.++...++.|..||. +++... .+....
T Consensus 220 -----------------------~~~~~~~~~~----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 271 (300)
T 2qc5_A 220 -----------------------ISEYDIPTPN----ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTEN 271 (300)
T ss_dssp -----------------------EEEEECSSTT----CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTT
T ss_pred -----------------------EEEEECCCCC----CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccC
Confidence 0011000000 11234467778887776666789999998 454332 223345
Q ss_pred CCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 355 APVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
..+.+++++++|+++++.. . .|..++..
T Consensus 272 ~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 272 AEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 6689999999998766655 4 67777653
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.76 E-value=7.7e-16 Score=143.77 Aligned_cols=278 Identities=10% Similarity=0.016 Sum_probs=174.9
Q ss_pred cCCCCeEEEEeCCCc---EEEEEcCC----CeeEEEecc----cccceeeEEEEEeCCCCceEEEeecC-----cEEEEE
Q 015371 49 SNDGSFFVAASQESN---IKVYNVDK----NWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASIC-----AIVNIV 112 (408)
Q Consensus 49 s~~~~~l~t~~~dg~---i~iw~~~~----~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w 112 (408)
+|+|++++....++. -.+|.... +.....++. ..++...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999887655433 55665532 222222211 12233468899999999999987654 469999
Q ss_pred ECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe--------------EEEEECCCCcce--
Q 015371 113 DVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF--------------IYVYDLQANKCS-- 176 (408)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~~-- 176 (408)
|+.+++..... .... .+..++|+|| +.|+.++.++. |++|++.++...
T Consensus 195 dl~tg~~~~~~---~~~~------------~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 258 (741)
T 1yr2_A 195 GVADGKPLADE---LKWV------------KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ 258 (741)
T ss_dssp ETTTCCEEEEE---EEEE------------ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE
T ss_pred ECCCCCCCCcc---CCCc------------eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE
Confidence 99988763321 1110 1357899999 98888876543 899999776532
Q ss_pred eeec--CcCCCceEEEEecCCCCEEEEecCCC-----eEEEEeccccccCC--ccceeeecccCCeEEEEecCCCCeEEE
Q 015371 177 LRIP--AHKSDVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKG--RANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 177 ~~~~--~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
..+. .+...+..+.|+ +++++|+..+.++ .|.+||+. .+ .....+..+...+.... +|+|+.|+.
T Consensus 259 lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~ 332 (741)
T 1yr2_A 259 PVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQLWF 332 (741)
T ss_dssp EEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTEEEE
T ss_pred EEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCEEEE
Confidence 2222 233458899999 8898888776544 89999975 22 21445555555555553 488988887
Q ss_pred eecC----CeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCC
Q 015371 248 NGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 323 (408)
Q Consensus 248 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (408)
.+.+ +.|.+||+.+.. . .....+..+... . ..+.++ +
T Consensus 333 ~s~~~~~~~~l~~~d~~~~~-~-------------------------------~~~~l~~~~~~~--l----~~~~~~-~ 373 (741)
T 1yr2_A 333 VSGDGAPLKKIVRVDLSGST-P-------------------------------RFDTVVPESKDN--L----ESVGIA-G 373 (741)
T ss_dssp EECTTCTTCEEEEEECSSSS-C-------------------------------EEEEEECCCSSE--E----EEEEEE-B
T ss_pred EECCCCCCCEEEEEeCCCCc-c-------------------------------ccEEEecCCCCe--E----EEEEEE-C
Confidence 7653 459999986521 0 001111122111 1 111233 4
Q ss_pred CcEEEEeeCCCeEEEEECC-CCceeEEEcc-CCCCeeeeeEeCCCCeEE----eecCCCcEEEEeeCCCC
Q 015371 324 QKYIYTGSSDNSVYIYDLV-SGAQVAKLDF-HNAPVRDCCWHPIYPMLI----SSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----s~~~dg~v~iw~~~~~~ 387 (408)
+.++++...|+..++|.+. +++....+.. +.+.|..++++|+++.|+ +....+.|++||+.+++
T Consensus 374 ~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 374 NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6778888889887776554 4666666654 356788999999988665 33456899999997754
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=5.6e-16 Score=126.58 Aligned_cols=242 Identities=8% Similarity=0.036 Sum_probs=160.8
Q ss_pred ceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 42 RVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
...+++++++|++++ +...++.|.+|+..+..... .. ......+.+++++++++.+++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--LP-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--CC-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--Ee-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 688999999999777 44677899999876543221 11 11223577899999998666555 889999998765432
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 200 (408)
... .. ....+..++++++|+.+++...++.|.+|+..+.............+.++++. +++++++
T Consensus 101 ~~~---~~-----------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v 165 (270)
T 1rwi_B 101 VLP---FD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYV 165 (270)
T ss_dssp ECC---CC-----------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCEEE
T ss_pred eee---cC-----------CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCEEE
Confidence 111 00 01248899999999877766678899999866554333222333467899999 7888888
Q ss_pred EecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccce
Q 015371 201 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 280 (408)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 280 (408)
+...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 166 ~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------------- 225 (270)
T 1rwi_B 166 TDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------------- 225 (270)
T ss_dssp EEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC----------------
T ss_pred EECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc----------------
Confidence 87778899999964 2222222223336788999999998777777788999999865211
Q ss_pred eecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 281 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
....... ......++++++|+++++...++.|+++++...+.
T Consensus 226 -------------------~~~~~~~-----~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 -------------------TVLPFTG-----LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -------------------EECCCCS-----CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -------------------eeeccCC-----CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1100000 01223446778899888888899999999876543
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=2e-15 Score=122.80 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=139.2
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
.+++|++++.|+.|++||.++++.+.+...... ..+.++.++|+|++|+ +.++.|..||. +++.... +....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~--~~~~~- 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN--IAAPA- 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE--EECCT-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE--EcCCC-
Confidence 467899999999999999989987766544321 2477889999999888 45778999998 5654332 22211
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEec-CCeEEEEECCCCcceeeec------CcCCCceEEEEecCCCCEEEEec
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIP------AHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
...+.++.+.++|+.+++.+. ++.|..+|. +++.+..+. .+......+++. ++++++++..
T Consensus 76 ----------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~~ 143 (276)
T 3no2_A 76 ----------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVPLF 143 (276)
T ss_dssp ----------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEET
T ss_pred ----------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEEEec
Confidence 114788999999999998877 778888886 676665553 122244556777 8899999999
Q ss_pred CCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 204 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.++.|..||. .++.+..+... ....++...+++++++++..++.|..+|..+
T Consensus 144 ~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 144 ATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp TTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred CCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 9999999994 37777776654 4556778889999999998888999999886
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=1.1e-15 Score=124.26 Aligned_cols=213 Identities=14% Similarity=0.066 Sum_probs=156.8
Q ss_pred CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc
Q 015371 96 DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 175 (408)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 175 (408)
.++.|++++.++.|.+||.++++....... +. ...+.++.++|+|+.++ +.++.|..||. +++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~~-----------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--EK-----------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC--CT-----------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--Cc-----------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE
Confidence 467899999999999999988876433322 21 01478899999999887 34788999999 8888
Q ss_pred eeeecCc-CCCceEEEEecCCCCEEEEecC-CCeEEEEeccccccCCccceeee------cccCCeEEEEecCCCCeEEE
Q 015371 176 SLRIPAH-KSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLM------GHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 176 ~~~~~~~-~~~v~~l~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~ 247 (408)
+..+..+ ...+.++.+. ++++++++.+. ++.|..+|. .++.+..+. .+......+.+.++|+++++
T Consensus 68 ~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp EEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred EEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 8888764 3468888998 89999998877 777777773 455544443 12234556678899999999
Q ss_pred eecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEE
Q 015371 248 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 327 (408)
Q Consensus 248 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 327 (408)
...++.|..||... +.+..+..... .+.....++|+++
T Consensus 142 ~~~~~~v~~~d~~G-----------------------------------~~~w~~~~~~~-------~~~~~~~~~g~~~ 179 (276)
T 3no2_A 142 LFATSEVREIAPNG-----------------------------------QLLNSVKLSGT-------PFSSAFLDNGDCL 179 (276)
T ss_dssp ETTTTEEEEECTTS-----------------------------------CEEEEEECSSC-------CCEEEECTTSCEE
T ss_pred ecCCCEEEEECCCC-----------------------------------CEEEEEECCCC-------ccceeEcCCCCEE
Confidence 99999999999763 33344433211 1122345789999
Q ss_pred EEeeCCCeEEEEECCCCceeEEEccCC------CCeeeeeEeCCCCeEEee
Q 015371 328 YTGSSDNSVYIYDLVSGAQVAKLDFHN------APVRDCCWHPIYPMLISS 372 (408)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~ 372 (408)
+++..++.|..+|..+|+.+.++..+. ..+..++..++|.++++.
T Consensus 180 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 180 VACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 999989999999999999998886432 227788888999987776
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=1.6e-15 Score=141.61 Aligned_cols=203 Identities=13% Similarity=0.092 Sum_probs=131.3
Q ss_pred cccCceeEEEEcCCCCeEEEEeCC-----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcE----
Q 015371 38 GMNSRVYTSQFSNDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---- 108 (408)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCccccc
Confidence 344478899999999999987643 469999999986543211 1112357899999 98988876543
Q ss_pred ----------EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC-----eEEEEECCCC
Q 015371 109 ----------VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQAN 173 (408)
Q Consensus 109 ----------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 173 (408)
|++|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.++
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFAT----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECC----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEecc----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 8889987665321111111 11122478899999999998887654 8999999876
Q ss_pred --cceeeecCcCCCceEEEEecCCCCEEEEecC----CCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEE
Q 015371 174 --KCSLRIPAHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 247 (408)
Q Consensus 174 --~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 247 (408)
+....+..+...+.... + ++++.|+..+. ++.|.+||+.... ......+..+...+..+.+. ++.++++
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-D-GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-E-EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred CCcccEEecCCCCceEEEE-e-ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 41344544554555543 4 56666666654 4459999975210 22333344444556677777 5667788
Q ss_pred eecCCeEEEEeCC
Q 015371 248 NGKDQTTKLWDIR 260 (408)
Q Consensus 248 ~~~d~~i~iwd~~ 260 (408)
...|+..++|.+.
T Consensus 380 ~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 380 YIHDAKSQVLAFD 392 (741)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 8889987777654
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.74 E-value=5.2e-15 Score=124.11 Aligned_cols=260 Identities=8% Similarity=-0.001 Sum_probs=172.2
Q ss_pred CCCcEEEEEcCCCeeEEEeccc---ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecC
Q 015371 60 QESNIKVYNVDKNWKIQKDIET---KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSAD 136 (408)
Q Consensus 60 ~dg~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (408)
.+++|.++|.++++........ .........+.+. +++.+++...++.|.+||..+++..... ....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--~~~~------- 84 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--TGFT------- 84 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--ECCS-------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--CCCC-------
Confidence 3789999999988654332110 1111245677774 4555566666899999999988763322 2111
Q ss_pred CCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeecCcC-----CCceEEEEecCCCCEEEEec-CCCeEE
Q 015371 137 GDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFADETGHLIFSGS-DDSLCK 209 (408)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~~~~-~dg~i~ 209 (408)
....++++++++ ++++. .++.|.+||..+++....+.... .....+++. ++.++++.. .++.|.
T Consensus 85 ------~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 85 ------SPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRIL 155 (328)
T ss_dssp ------SEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEE
T ss_pred ------CCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEE
Confidence 478899989884 55555 78999999999998776665322 145677773 444454444 488999
Q ss_pred EEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC----------CeEEEEeCCCCcCccccccccccccccc
Q 015371 210 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD----------QTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
++|+. ..+....+.. ......+.++|+|++++++..+ +.|.++|..+.
T Consensus 156 viD~~----t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----------------- 213 (328)
T 3dsm_A 156 KIDTE----TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----------------- 213 (328)
T ss_dssp EEETT----TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----------------
T ss_pred EEECC----CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-----------------
Confidence 99965 4555555543 2345688899999977776654 78999998762
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEE--EccCCCCe
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK--LDFHNAPV 357 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~v 357 (408)
+....+..... .....++++|+++.|+++.. .|.+||..+++.... +..+....
T Consensus 214 -----------------~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p 269 (328)
T 3dsm_A 214 -----------------TVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKY 269 (328)
T ss_dssp -----------------EEEEEEECCTT-----CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCE
T ss_pred -----------------eEEEEEecCCC-----CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCce
Confidence 22222221100 11234578888998888765 899999988875421 22224578
Q ss_pred eeeeEeC-CCCeEEee----cCCCcEEEEeeC
Q 015371 358 RDCCWHP-IYPMLISS----SWDCNIVRWEIP 384 (408)
Q Consensus 358 ~~~~~~~-~~~~l~s~----~~dg~v~iw~~~ 384 (408)
..++++| ++.++++. ..++.|.+||..
T Consensus 270 ~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 270 YGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 8999999 55566665 578999999987
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.74 E-value=2.6e-15 Score=125.51 Aligned_cols=294 Identities=12% Similarity=0.014 Sum_probs=185.8
Q ss_pred EEEEcCCCCeEEEEeC-----CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee----------cCcEE
Q 015371 45 TSQFSNDGSFFVAASQ-----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIV 109 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i 109 (408)
.....|+++.+++... ++.|.+.|..+.+.+..+..... + . ++++||+++++++. .++.|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 3456789998888765 67999999999877766544333 3 4 99999999998776 36789
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCce
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
.+||..+.+..........+.. ........+.++|||++++++.. ++.|.++|+.+++.+.++....
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~-------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---- 180 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRF-------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---- 180 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCC-------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----
T ss_pred EEEECCCCeEEEEEECCCcccc-------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----
Confidence 9999998876433322110000 00012556899999999998874 6899999999999888885322
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc----cCCeE-EEEec-CCCCeEEEeecCCeEEEEeCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----LEGIT-FIDSR-RDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+....|.....+++.+.||++.+.++.. .++.......+ ..++. ...|. ++|++++ .+.+|.+.+.|+..
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLAKVAFGT---EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS 256 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCS---SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT
T ss_pred cceeecCCCceeEEECCCCCEEEEECCC---CCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCC
Confidence 1223345667777888899999988742 12221111111 12221 23453 6776554 45589999999876
Q ss_pred CcCccccccccccccccceeecccccceeeccCCCcceeeeeccc-ceeeEEEEEeeccccCCCcEEEEeeC--------
Q 015371 262 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSS-------- 332 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~-------- 332 (408)
...... ..+..+.... ............+++++++.++....
T Consensus 257 ~~~~v~-----------------------------~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 257 GDAKFL-----------------------------PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp SSCEEC-----------------------------CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred Ccceee-----------------------------cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 321100 0000000000 00000000001245667777777643
Q ss_pred --CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEe-ecCCCcEEEEeeCCCCC
Q 015371 333 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLIS-SSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 333 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~dg~v~iw~~~~~~~ 388 (408)
.+.|.++|+.+++.+..+.. ...+..+++++|++ +|++ ...++.|.++|..+++.
T Consensus 308 ~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 308 TASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp SCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 25799999999999998864 24688999999997 6665 45689999999987654
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=2.5e-14 Score=119.91 Aligned_cols=258 Identities=8% Similarity=-0.010 Sum_probs=167.3
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
.....+.+. +++++++...++.|.+||..+++.+..... ...+..++++++++..++...++.|.+||..+.+..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 446777775 355566666678999999999877665522 235788999999854444447899999999887654
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe--cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 198 (408)
........ .........+++ ++..++++. .++.|.++|..+++.+..+.. ......++++ +++++
T Consensus 119 ~~i~~g~~---------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~-~dG~l 185 (328)
T 3dsm_A 119 GYIECPDM---------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMD-KYNKM 185 (328)
T ss_dssp EEEECTTC---------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEEC-TTSEE
T ss_pred EEEEcCCc---------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEc-CCCCE
Confidence 32221110 000112445666 344555555 488999999999988777764 3446788898 78887
Q ss_pred EEEecCC----------CeEEEEeccccccCCccceeeecc-cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccc
Q 015371 199 IFSGSDD----------SLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 199 l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
++++..+ +.|.++|.. ..+....+... ......++++|+++.|.++.. .|.+||..+......
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred EEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence 7777655 789999964 45555444322 236889999999998887654 899999876332100
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC-CCcEEEEe----eCCCeEEEEECC
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTG----SSDNSVYIYDLV 342 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~----~~dg~i~vwd~~ 342 (408)
..+... ......++++| ++.+.++. ..++.|.+||..
T Consensus 260 --------------------------------~~~~~~------~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 260 --------------------------------PFLEFR------DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp --------------------------------CSBCCC------SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred --------------------------------eeecCC------CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 000000 01233446777 45555555 568899999987
Q ss_pred CCceeEEEccCCCCeeeeeE
Q 015371 343 SGAQVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~ 362 (408)
++.+.++.. ......++|
T Consensus 302 -g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 302 -GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp -CCEEEEEEE-EESEEEEEE
T ss_pred -CCEEEEEEe-ccCcceEEE
Confidence 888888763 223344555
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=2.3e-13 Score=112.78 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=158.2
Q ss_pred ceeeEecCCccEEEeec-CceEEEEEEecCceeee--cccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVD--GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~ 80 (408)
.+++++.++|.+..+.. ...+..+-+......+. .+...+.+++++++|.++++...++.|..|+.... .....
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~- 93 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYT- 93 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEE-
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEe-
Confidence 56889999998776654 33343333332222222 34577999999999998888777888999997632 22221
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
.......+..+++.+++..+++...++.|..||. +++..... ... ....+..+++.+++...++..
T Consensus 94 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-~~~------------~~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 94 LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE-LPN------------KGSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE-CSS------------TTCCEEEEEECTTSCEEEEET
T ss_pred CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec-CCC------------CCCCCceEEEcCCCCEEEEeC
Confidence 1112336889999999988877777889999998 44332111 100 112588999999998777666
Q ss_pred cCCeEEEEECCCCcceee-ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce-eeecccCCeEEEEe
Q 015371 161 SDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDS 238 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~ 238 (408)
.++.|..||. +++.... +......+..+++. +++++.++...++.|.+||. .+.... ....+...+.++.+
T Consensus 160 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 160 QNNAIGRITE-SGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-----SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-----TCCEEEEECSSTTCCEEEEEE
T ss_pred CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-----CCcEEEEECCCCCCCceeEEE
Confidence 6789999998 6654432 33345568899998 77888777777889999995 222211 12334567899999
Q ss_pred cCCCCeEEEeecCCeEEEEeCC
Q 015371 239 RRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 239 ~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
+++|+++++...++.|..||..
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCCEEEeccCCceEEEECCC
Confidence 9999977766577899999973
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.72 E-value=2.4e-14 Score=119.67 Aligned_cols=248 Identities=9% Similarity=0.073 Sum_probs=162.2
Q ss_pred eEEEEEeCCCCceEEE-------eecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEE
Q 015371 87 TITDTSLSPDQRFLVY-------ASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVA 158 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~ 158 (408)
...+++|++++..+++ ...++.|.+||..+++...... ... ..+...+..++++++ ++ +++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~---------~~~~~~~~~i~~~~~~g~-l~v 87 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEV---------NGYGGIPAGCQCDRDANQ-LFV 87 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEE---------TTEECCEEEEEECSSSSE-EEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-ccc---------CCCCCCCceEEEecCCCc-EEE
Confidence 4678899999987777 5778899999987776532211 000 001125889999999 65 444
Q ss_pred EecCCeEEEEECCCCcceee-ecC----cCCCceEEEEecCCCCEEEEecCC---------------CeEEEEecccccc
Q 015371 159 AGSDNFIYVYDLQANKCSLR-IPA----HKSDVNTVCFADETGHLIFSGSDD---------------SLCKVWDRRCFIS 218 (408)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~ 218 (408)
++..+.|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||.
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 160 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT----- 160 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----
T ss_pred EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECC-----
Confidence 4445579999988 664433 211 12458899999 788887777655 56767763
Q ss_pred CCccceeeecccCCeEEEEec----CCCCeEEEe-ecCCeEEEEeCCC-CcCccccccccccccccceeecccccceeec
Q 015371 219 KGRANGVLMGHLEGITFIDSR----RDGRYFISN-GKDQTTKLWDIRK-MSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
.++. ..+..+......++++ |+++.++.+ ..++.|.+||+.. .....
T Consensus 161 ~g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~-------------------------- 213 (314)
T 1pjx_A 161 DGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-------------------------- 213 (314)
T ss_dssp TSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--------------------------
T ss_pred CCCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc--------------------------
Confidence 2222 2233344567889999 999765544 5678999999752 10000
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEe
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLIS 371 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s 371 (408)
......+..+.. .....++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++++
T Consensus 214 ---~~~~~~~~~~~~-----~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 214 ---KKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp ---EEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred ---ceEEEECCCCCC-----CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence 001111111100 1122346778898888887889999999987887777777777899999999999 5556
Q ss_pred ecCCCcEEEEeeCCCC
Q 015371 372 SSWDCNIVRWEIPGIG 387 (408)
Q Consensus 372 ~~~dg~v~iw~~~~~~ 387 (408)
...++.|..|++....
T Consensus 286 ~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 286 EHENNAVWKFEWQRNG 301 (314)
T ss_dssp ETTTTEEEEEECSSCB
T ss_pred eCCCCeEEEEeCCCCC
Confidence 6667899999987643
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.70 E-value=1.7e-14 Score=123.01 Aligned_cols=289 Identities=10% Similarity=-0.000 Sum_probs=182.6
Q ss_pred CCCCeEEEEeCC-----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee----------cCcEEEEEEC
Q 015371 50 NDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDV 114 (408)
Q Consensus 50 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~w~~ 114 (408)
++++++++.... +.|.++|..+.+.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 467766666542 6999999999977766554433 3 799999999998876 3678999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCceEEEEe
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 192 (408)
.+.+......+...... ........+.++|||++++++.. ++.|.+.|+.+++.+..+.... +....
T Consensus 157 ~t~~vv~~I~v~g~~r~-------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~ 225 (426)
T 3c75_H 157 VTFLPIADIELPDAPRF-------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIF 225 (426)
T ss_dssp TTCCEEEEEEETTCCCC-------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEE
T ss_pred CCCcEEEEEECCCcccc-------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeec
Confidence 98876433322100000 00002456899999999999874 5789999999999888776421 12233
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCccce----eeecccCCe-EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccc
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGRANG----VLMGHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
|.....+++.+.||.+.+.+.. .++... .+.....++ ..+.+.+++..++.....+.+.+.|+........
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~ 301 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR 301 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred cCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe
Confidence 2334566666777877777752 222221 111111111 2356788888877777889999999865221100
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeeccc-ceeeEEEEEeeccccCCCcEEEEeeC----------CCeE
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSS----------DNSV 336 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i 336 (408)
. ......... ............+++|+++.+++... ++.|
T Consensus 302 ~-----------------------------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 302 A-----------------------------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp C-----------------------------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred e-----------------------------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 0 000000000 00000000011256777887776542 3579
Q ss_pred EEEECCCCceeEEEccCCCCeeeeeEeCCCC-eEEeec-CCCcEEEEeeCCCCC
Q 015371 337 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGE 388 (408)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~v~iw~~~~~~~ 388 (408)
.++|..+.+.+.++... .....++|+||++ +++++. .++.|.++|+.+.+.
T Consensus 353 sVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 353 VVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 99999999999988642 3588899999999 888877 589999999988764
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=1.5e-13 Score=114.93 Aligned_cols=294 Identities=15% Similarity=0.105 Sum_probs=179.2
Q ss_pred EecCCccEEEeecC-----ceEEEEEEecCcee---eecccCceeEEEEcCCCCeEEEEe----------CCCcEEEEEc
Q 015371 8 NYSGRGRFSAADSC-----HVLSRYLPVNGPWK---VDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKVYNV 69 (408)
Q Consensus 8 ~~s~dg~~~~~~~~-----~~~~~~~~~~~~~~---l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~ 69 (408)
...||++.+..... ......++...... +..-..+ .++++|||++|+++. .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 44688876554432 23444555444332 2222333 499999999988775 3578999999
Q ss_pred CCCeeEEEeccccc----ceeeEEEEEeCCCCceEEEeec--CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccc
Q 015371 70 DKNWKIQKDIETKA----LRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFG 143 (408)
Q Consensus 70 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (408)
.+.+.+..+....+ .......++|+|||++++++.. ++.|.++|+.+.+.........
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---------------- 180 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---------------- 180 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------------
Confidence 99876665533210 0113446899999999998864 6899999999987644332211
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCC-CcceeeecC----cCCCce-EEEEecCCCCEEEEecCCCeEEEEeccccc
Q 015371 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPA----HKSDVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFI 217 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~----~~~~v~-~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (408)
. ...+....+.+++.+.||.+.+.++.+ ++....... ...++. ...|.++++++++ .+.+|.|.+.|+..
T Consensus 181 ~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~-- 256 (386)
T 3sjl_D 181 C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS-- 256 (386)
T ss_dssp E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT--
T ss_pred c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCC--
Confidence 1 112222445566667778777777765 443221111 112222 2466656776655 45589999999741
Q ss_pred cCCccceeee----------cccCCeEEEEecCCCCeEEEeec----------CCeEEEEeCCCCcCccccccccccccc
Q 015371 218 SKGRANGVLM----------GHLEGITFIDSRRDGRYFISNGK----------DQTTKLWDIRKMSSNTTDNSRLRDYDW 277 (408)
Q Consensus 218 ~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 277 (408)
........+. -..+....+.++++++.+..... .++|.+.|+.+.
T Consensus 257 ~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--------------- 321 (386)
T 3sjl_D 257 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------------- 321 (386)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------------
T ss_pred CcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------------
Confidence 1111222221 01233445777899888777643 246889998873
Q ss_pred cceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCc-EEEEe-eCCCeEEEEECCCCceeEEEccCCC
Q 015371 278 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTG-SSDNSVYIYDLVSGAQVAKLDFHNA 355 (408)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (408)
+.+..+... ...+++.+++|++ +|++. ..++.|.++|..+++.+.++..- +
T Consensus 322 -------------------kv~~~i~vg-------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~ 374 (386)
T 3sjl_D 322 -------------------ERLAKFEMG-------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-G 374 (386)
T ss_dssp -------------------CEEEEEEEE-------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-C
T ss_pred -------------------eEEEEEECC-------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-C
Confidence 333333221 2356678999997 66665 45899999999999999998743 3
Q ss_pred CeeeeeEeCC
Q 015371 356 PVRDCCWHPI 365 (408)
Q Consensus 356 ~v~~~~~~~~ 365 (408)
.-+.|.+++|
T Consensus 375 ~p~~l~~s~d 384 (386)
T 3sjl_D 375 HGPQVITTAD 384 (386)
T ss_dssp SSCCEEEECC
T ss_pred CCceeEECCc
Confidence 3455677765
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.65 E-value=2.9e-13 Score=116.65 Aligned_cols=199 Identities=11% Similarity=0.080 Sum_probs=136.2
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc--EEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~w~~~~~~ 118 (408)
.....++|+++++++++...++.|++||.+++..... ..... ... ++|+|+++.|+++..++ .|.+++.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~~~~~---~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-HPGFK---GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-EETCC---BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-eccCC---CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 4678999999999888877789999999987644332 22211 233 99999999998888765 78888876544
Q ss_pred eeeee-eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceee----ecCcCCCc--eEEEE
Q 015371 119 RESLA-NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR----IPAHKSDV--NTVCF 191 (408)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~l~~ 191 (408)
..... .... .....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|
T Consensus 206 ~~~~~g~~~~-----------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 206 APTRIGQLGS-----------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp CEEEEEECCT-----------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred eeEEeeeccc-----------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 31111 0000 0112477899999555666677788999999987753322 22222222 39999
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc---------------cCCeEEEEecCCCCeEEEee-cCCeEE
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---------------LEGITFIDSRRDGRYFISNG-KDQTTK 255 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~d~~i~ 255 (408)
+|.++.++++-..++.|+.|+.. +. ...+.++ -.....++++++|+++++-. .++.|+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 94467788888888999999963 22 2222222 23478999999999888877 788999
Q ss_pred EEeCCC
Q 015371 256 LWDIRK 261 (408)
Q Consensus 256 iwd~~~ 261 (408)
.||+.+
T Consensus 349 ~~~~~~ 354 (409)
T 3hrp_A 349 KLDILD 354 (409)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999765
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=3.6e-12 Score=105.64 Aligned_cols=234 Identities=8% Similarity=-0.045 Sum_probs=156.3
Q ss_pred cceeeEecCCccEEEeec-CceEEEEEEecCcee--eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec
Q 015371 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 79 (408)
..+++++.++|.+..+.. ...+..+-+...... +..+...+.+++++++|+++++...++.|..||.. +... ...
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~ 98 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYP 98 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Eec
Confidence 456788999998766654 333433332212111 22334679999999999988877667889999987 4332 221
Q ss_pred ccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE
Q 015371 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 159 (408)
Q Consensus 80 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (408)
.......+.++++.++++++++...++.|..++.. ++..... ... ....+..+++.++++..++.
T Consensus 99 -~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~------------~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 99 -LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPN------------KGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp -CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-CSS------------TTCCEEEEEECTTSSEEEEE
T ss_pred -CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-CCC------------CCCCceeEEECCCCCEEEEe
Confidence 11122368899999999887777667889999886 4432111 110 11258899999999866655
Q ss_pred ecCCeEEEEECCCCcceee-ecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce-eeecccCCeEEEE
Q 015371 160 GSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFID 237 (408)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~ 237 (408)
..++.|..+|. +++.... ...+...+..+++. +++++.++....+.|.+||.. +.... ....+...+.+++
T Consensus 164 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTT-----GEISEYDIPTPNARPHAIT 236 (300)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEE
T ss_pred cCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCC-----CcEEEEECCCCCCCceEEE
Confidence 55788999998 5544332 22344578899998 788888777777889999952 22222 1223456788999
Q ss_pred ecCCCCeEEEeecCCeEEEEeCC
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
+.++|++.++...++.|..||..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999977776667899999873
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=5.6e-13 Score=111.33 Aligned_cols=235 Identities=11% Similarity=0.096 Sum_probs=153.8
Q ss_pred cceeeEecCCccEEEe-------ec-CceEEEEEEe-cCceeeec-----ccCceeEEEEcCC-CCeEEEEeCCCcEEEE
Q 015371 3 VGREVNYSGRGRFSAA-------DS-CHVLSRYLPV-NGPWKVDG-----MNSRVYTSQFSND-GSFFVAASQESNIKVY 67 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~-------~~-~~~~~~~~~~-~~~~~l~~-----h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw 67 (408)
....++|+++|++..+ +. ...+..+-+. .....+.. +...+.+++++++ |+++++.. ...|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 4578999999987766 33 3333333222 22222322 5678999999999 76555554 4469999
Q ss_pred EcCCCeeEEEe-ccc--ccceeeEEEEEeCCCCceEEEeecC---------------cEEEEEECCCCceeeeeeeeeee
Q 015371 68 NVDKNWKIQKD-IET--KALRWTITDTSLSPDQRFLVYASIC---------------AIVNIVDVGSSARESLANVTIHK 129 (408)
Q Consensus 68 ~~~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~~w~~~~~~~~~~~~~~~~~ 129 (408)
+.+ ++. ... ... ......+.+++++++++++++...+ +.|..|+.. ++.... ....
T Consensus 98 d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~---~~~~ 171 (314)
T 1pjx_A 98 QTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV---DTAF 171 (314)
T ss_dssp ETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE---EEEE
T ss_pred eCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe---ccCC
Confidence 987 533 222 111 1112358899999999887776554 566667654 332211 1111
Q ss_pred eeeeecCCCCCccceEEEEEc----CCCCEEEEE-ecCCeEEEEECC-CCc-----ceeeecCcC-CCceEEEEecCCCC
Q 015371 130 GLDFSADGDEDEFGIFSVKFS----TDGQELVAA-GSDNFIYVYDLQ-ANK-----CSLRIPAHK-SDVNTVCFADETGH 197 (408)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~l~~~~~~~~ 197 (408)
. ....++++ ++++.++++ ..++.|.+||.. +++ ....+..+. ..+..+++. ++++
T Consensus 172 ~------------~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~ 238 (314)
T 1pjx_A 172 Q------------FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNN 238 (314)
T ss_dssp S------------SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCC
T ss_pred C------------CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-CCCC
Confidence 1 36788999 999766655 457899999986 443 222333333 567889999 7888
Q ss_pred EEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeE-EEeecCCeEEEEeCCC
Q 015371 198 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRK 261 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 261 (408)
++++...++.|.+||.+ .++....+..+...+.+++++|+++.| ++...++.|..|++..
T Consensus 239 l~v~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPD----GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEETTTEEEEECTT----CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCEEEEEcCC----CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88887788899999963 355555666666789999999999954 4555568899999875
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.65 E-value=2.8e-13 Score=116.76 Aligned_cols=240 Identities=13% Similarity=0.153 Sum_probs=159.2
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC--e
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--F 164 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~ 164 (408)
....++|+++++++++...++.|++||..++........ .. ... ++|+++++.|+++..++ .
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~-------------~~~-ia~~~~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FK-------------GGK-PAVTKDKQRVYSIGWEGTHT 195 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CC-------------BCB-CEECTTSSEEEEEBSSTTCE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CC-------------CCc-eeEecCCCcEEEEecCCCce
Confidence 578899999999777777779999999987765433221 11 233 89999999999888765 8
Q ss_pred EEEEECCCCcceeee----cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee----eecccCCe--E
Q 015371 165 IYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV----LMGHLEGI--T 234 (408)
Q Consensus 165 i~i~d~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i--~ 234 (408)
|.+++...+.....+ ......+.+++++|.++.+++ +..++.|+.||.. ....... ..++...- .
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSSCC
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECC----CCCEEEEecccccCCCCCCccc
Confidence 999998766543333 224567789999933555444 6778899999964 2221111 11222222 3
Q ss_pred EEEecCC-CCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccc-------
Q 015371 235 FIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS------- 306 (408)
Q Consensus 235 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 306 (408)
.++|+|+ +.++++-..++.|+.|+..... ..+.++.
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------------------------------------~~~~g~~~~~g~~d 314 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGEC------------------------------------EWFCGSATQKTVQD 314 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCCE------------------------------------EEEEECTTCCSCBC
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCCE------------------------------------EEEEeCCCCCCcCC
Confidence 8999995 6666666678889999876410 0000000
Q ss_pred --ceeeEEEEEeeccccCCCcEEEEee-CCCeEEEEECCCCceeEEEccC---------------CCCeeeeeEeCCCCe
Q 015371 307 --VLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFH---------------NAPVRDCCWHPIYPM 368 (408)
Q Consensus 307 --~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~ 368 (408)
...........++++++|+++++-. .++.|+.|++.+++. .++.++ -.....+++++++.+
T Consensus 315 g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l 393 (409)
T 3hrp_A 315 GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY 393 (409)
T ss_dssp EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence 0000011234457888899777777 789999999877764 444333 135788999999888
Q ss_pred EEeecCCCcEEEEeeC
Q 015371 369 LISSSWDCNIVRWEIP 384 (408)
Q Consensus 369 l~s~~~dg~v~iw~~~ 384 (408)
+++-..++.|+.++++
T Consensus 394 yVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 394 WIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEESTTCEEEEEEEC
T ss_pred EEEECCCCeEEEEEeC
Confidence 8888888899988763
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.64 E-value=4.5e-12 Score=107.61 Aligned_cols=243 Identities=10% Similarity=-0.031 Sum_probs=152.5
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEEcCCCeeEEEeccc-ccc---eeeEEEEEeCCCCceEEEeec--CcE
Q 015371 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIET-KAL---RWTITDTSLSPDQRFLVYASI--CAI 108 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-~~~---~~~v~~~~~~~~~~~l~~~~~--dg~ 108 (408)
.+++||||++|+++. .++.|.+||..+.+.+...... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999885 3678999999887655544322 000 113457899999999998874 478
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCcceeeec-----Cc
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIP-----AH 182 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~ 182 (408)
|.++| .+++.... .+... .++.+.|++ ..+++.+.||.+.++|. +++...... ..
T Consensus 150 v~viD-~t~~~~~~-~i~~~----------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 150 VGLVV-QGGSSDDQ-LLSSP----------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA 210 (373)
T ss_pred EEEEE-CCCCEEeE-EcCCC----------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC
Confidence 99999 88765322 01111 123444554 34556667899999999 776653321 11
Q ss_pred CCCc-eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec----------ccCCeEEEEecCCCCeEEEeec-
Q 015371 183 KSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYFISNGK- 250 (408)
Q Consensus 183 ~~~v-~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~- 250 (408)
..++ ....+. +++..++..+..+.+.+.|+... .......+.- .......+.++|+++.+.+...
T Consensus 211 ~~p~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 211 AQNLLTQPAQA-NKSGRIVWPVYSGKILQADISAA--GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred CcceeecceeE-ecCCEEEEEcCCceEEEEeccCC--cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence 1221 234555 33334333346788999997411 1111122211 1122444778999887777543
Q ss_pred ---------CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeecccc
Q 015371 251 ---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 321 (408)
Q Consensus 251 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 321 (408)
++.|.++|+.+ .+.+..+.... ..+.+.|+
T Consensus 288 ~~~~~~~~~~~~V~VID~~t----------------------------------~~vv~~i~~g~-------~p~~i~~s 326 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLV----------------------------------GQTSSQISLGH-------DVDAISVA 326 (373)
T ss_pred CCcccccCCCCeEEEEECCC----------------------------------CEEEEEEECCC-------CcCeEEEC
Confidence 35799999877 23334433221 23556789
Q ss_pred CCCc-EEEEee-CCCeEEEEECCCCceeEEE
Q 015371 322 TAQK-YIYTGS-SDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 322 ~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~ 350 (408)
|||+ +++++. .++.|.++|+.+++.+..+
T Consensus 327 ~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 327 QDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999 777776 4899999999999998884
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.64 E-value=1.2e-13 Score=127.88 Aligned_cols=205 Identities=13% Similarity=0.130 Sum_probs=132.5
Q ss_pred cccCceeEEEEcCCCCeEEEEe-----CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc-----
Q 015371 38 GMNSRVYTSQFSNDGSFFVAAS-----QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA----- 107 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----- 107 (408)
+|...+..++|||||++||.+. ....|++||+.+++.+.... .. .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KD--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 4566789999999999998542 23579999999986543311 11 113568999 999999888774
Q ss_pred --------EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec----CCeEEEEECCCCc-
Q 015371 108 --------IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQANK- 174 (408)
Q Consensus 108 --------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~- 174 (408)
.|++|++.+............. .+......+.|+|||++|+.... ...|+++|+.++.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIP---------AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSG---------GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCC---------CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 4999998876532221111110 01113678899999998876543 3589999998764
Q ss_pred ceeeecCcCCCceEEEEecCCCCEEEEecCC---CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC
Q 015371 175 CSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 175 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
....+..+....... +++.++.+++....+ +.|..+|+... .......+..|...+. .|+++++.|+....+
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP--GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC--CGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC--CccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 344555555555554 553455555555543 57888887521 1112345666666665 888999988776654
Q ss_pred C---eEEEEeCCC
Q 015371 252 Q---TTKLWDIRK 261 (408)
Q Consensus 252 ~---~i~iwd~~~ 261 (408)
+ .|++||+..
T Consensus 347 ~g~~~l~~~d~~g 359 (693)
T 3iuj_A 347 DATARVEQFDYEG 359 (693)
T ss_dssp TTEEEEEEECTTS
T ss_pred CCeeEEEEEECCC
Confidence 4 688888764
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.62 E-value=1.1e-12 Score=108.37 Aligned_cols=227 Identities=10% Similarity=0.071 Sum_probs=145.4
Q ss_pred EEEEEeCCCCc-eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 88 ITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 88 v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
..+..|+|++. .+++...++.|..||..++..... ... ..+.+++++++|++++ +. ++.|.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---~~~-------------~~~~~i~~~~dG~l~v-~~-~~~l~ 76 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---TMD-------------APVSSVALRQSGGYVA-TI-GTKFC 76 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---ECS-------------SCEEEEEEBTTSSEEE-EE-TTEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---eCC-------------CceEEEEECCCCCEEE-EE-CCeEE
Confidence 45678999654 555556688999999987654221 111 1588999999999444 44 57899
Q ss_pred EEECCCCcceeeecC----cCCCceEEEEecCCCCEEEEecCC---------CeEEEEeccccccCCccceeeecccCCe
Q 015371 167 VYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDD---------SLCKVWDRRCFISKGRANGVLMGHLEGI 233 (408)
Q Consensus 167 i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~i 233 (408)
+||.++++....... ....++.+++. ++++++++...+ ..-.+|.+. ..+. ...+..+....
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d---~~g~-~~~~~~~~~~p 151 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLF---PDHH-VKKYFDQVDIS 151 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEEC---TTSC-EEEEEEEESBE
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEE---CCCC-EEEEeeccccc
Confidence 999988764432221 12347889998 788876654321 233455442 1222 22233344566
Q ss_pred EEEEecCCCCeEE-EeecCCeEEEEeCC--CCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceee
Q 015371 234 TFIDSRRDGRYFI-SNGKDQTTKLWDIR--KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 310 (408)
Q Consensus 234 ~~~~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
..++|+|+++.|+ +.+.++.|..||+. ++... . .+.+..+....
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~--~---------------------------~~~~~~~~~~~---- 198 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS--N---------------------------RRSVYKLEKEE---- 198 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE--E---------------------------EEEEEECCGGG----
T ss_pred cceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc--C---------------------------cEEEEECCCCC----
Confidence 8999999998664 45557889999874 21100 0 01111111111
Q ss_pred EEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEe-CCCCeEEee
Q 015371 311 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLISS 372 (408)
Q Consensus 311 ~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~ 372 (408)
.....++++++|++.++...++.|.+||..+++.+..+..+...+++++|. |+++.|+.+
T Consensus 199 --~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 199 --QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp --CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred --CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 112234677889888887778899999998899999998777789999998 888755443
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=3.2e-13 Score=114.02 Aligned_cols=283 Identities=6% Similarity=-0.050 Sum_probs=169.2
Q ss_pred CceeEEEEcCCCCeEEEEe--CCCcEEEEEcCCCeeEEEec----ccccceeeEEEEEeCCCCceEEEeec-----CcEE
Q 015371 41 SRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDI----ETKALRWTITDTSLSPDQRFLVYASI-----CAIV 109 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 109 (408)
..+..++++|+|+++++.. .++.++||.+.++. +.... ....+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 23436677765443 32211 11223457999999999886665443 5789
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE-e---cCCeEEEEECCCCcceeeecCcCCC
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-G---SDNFIYVYDLQANKCSLRIPAHKSD 185 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (408)
.+||+.+++......+... ...+...+..+++++++..++.+ . .++.|.+||+.+++....+..|...
T Consensus 96 ~~~d~~tg~~~~~~~~~~~--------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~ 167 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPP--------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI 167 (343)
T ss_dssp EEEETTTTEEEEEEECCTT--------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred EEEECCCCeEEEEEECChh--------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence 9999988764332222100 00112246889999865555444 3 5789999999988766666544221
Q ss_pred ce-EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC-eEEEEeCCCCc
Q 015371 186 VN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMS 263 (408)
Q Consensus 186 v~-~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~ 263 (408)
.. ...+. .++..+.+.+.++.++.|. ..+..++++|+++.|+++..++ .+..++.....
T Consensus 168 ~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~ 228 (343)
T 2qe8_A 168 APEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS 228 (343)
T ss_dssp SCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT
T ss_pred ccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc
Confidence 11 13333 4565666666677665553 2357899999999888877665 44444432100
Q ss_pred CccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC
Q 015371 264 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 343 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 343 (408)
........ + ...+... ++. .....++++++|+++++...++.|.+||..+
T Consensus 229 ~~~~~~~~-------------------~----~~~~~~~-g~~------g~pdgia~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 229 NLQLTDAE-------------------L----GSKIERY-SEK------PICDGISIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp CTTCCHHH-------------------H----HTTCEEE-EEC------CSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred CCCCChhh-------------------h----hcceEec-ccC------CCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence 00000000 0 0000000 110 0112346778899999988899999999856
Q ss_pred CceeEEEcc-CCCCeeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 344 GAQVAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 344 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
++....... +...+++++|.+++.++++.+..+.+.+|
T Consensus 279 G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 279 RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 664333322 24568899999999888877655555433
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=3.4e-14 Score=119.38 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=127.4
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCee--------EEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--------IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.++.+++++...++++|+.++ +++|++++... ... .....+.. |+.++| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 699999999999999999985 77799764320 111 01112344 999999 99999998 889999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
+.+..... ....++ .++.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+
T Consensus 113 v~sl~~~~--~~~~~~------------~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS- 171 (388)
T 1xip_A 113 LEELSEFR--TVTSFE------------KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT- 171 (388)
T ss_dssp SSSTTCEE--EEEECS------------SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC-
T ss_pred chhhhccC--ccceee------------cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc-
Confidence 98765322 122221 14777777654 38888999999999999877543 45689999999
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCcc--ceee------e---cccCCeEEEEecCCCCeEEEe
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVL------M---GHLEGITFIDSRRDGRYFISN 248 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~ 248 (408)
+++ ++.|..||++++|+.. .... ...+ . +|...|.++.|.+++.++++-
T Consensus 172 pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 777 6789999999999864 2222 2333 2 367889999999999888763
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.58 E-value=2.3e-13 Score=114.42 Aligned_cols=167 Identities=8% Similarity=0.045 Sum_probs=123.2
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEec-------------CceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcC
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVN-------------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~ 70 (408)
-..|++++...++++++...+.. +... .+.....+.. |+.++| |+++|+++ .++.|++||+.
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v-~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVV-GELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEE-EEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEE-EEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 35688999988887777665543 4322 1223445777 999999 89999999 78999999987
Q ss_pred CCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc
Q 015371 71 KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS 150 (408)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (408)
+........ .+..++.++.+.+.. ++++..||.+.+||+.++.... ... .|.+++|+
T Consensus 115 sl~~~~~~~---~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~------~~~------------~Vs~v~WS 171 (388)
T 1xip_A 115 ELSEFRTVT---SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ------LAQ------------NVTSFDVT 171 (388)
T ss_dssp STTCEEEEE---ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE------EEE------------SEEEEEEC
T ss_pred hhhccCccc---eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc------ccC------------CceEEEEc
Confidence 754333222 233367787776543 8888999999999998776532 111 59999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCcc--eeee------c---CcCCCceEEEEecCCCCEEEE
Q 015371 151 TDGQELVAAGSDNFIYVYDLQANKC--SLRI------P---AHKSDVNTVCFADETGHLIFS 201 (408)
Q Consensus 151 ~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~------~---~~~~~v~~l~~~~~~~~~l~~ 201 (408)
|+| ++.|..||.+++|+...++. ...+ . +|...|.++.|. +++.++++
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl-~~~~flv~ 230 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL-SPQDFLAV 230 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES-SSSEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe-cCCeEEEE
Confidence 999 67788999999999877764 4445 2 367889999999 77777765
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.56 E-value=3.2e-12 Score=106.07 Aligned_cols=226 Identities=11% Similarity=0.007 Sum_probs=145.1
Q ss_pred eeeEecCCcc-EEEeec-CceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc-
Q 015371 5 REVNYSGRGR-FSAADS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET- 81 (408)
Q Consensus 5 ~~~~~s~dg~-~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~- 81 (408)
....|+|+|+ ++.++. ...+.++.+......+..+...+..++++++|+++++...++.|.+|+.+ +. .......
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~~~ 125 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVGRY 125 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEecc
Confidence 4678999998 334433 33444444433344566677889999999999977766566789999976 42 2222111
Q ss_pred cc-ceeeEEEEEeCCCCceEEE----eec-------------CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccc
Q 015371 82 KA-LRWTITDTSLSPDQRFLVY----ASI-------------CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFG 143 (408)
Q Consensus 82 ~~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (408)
.. ....+.++++.|+|+++++ +.. .+.|..+|..+++..... .. . .
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~-~------------~ 189 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL-D------------H 189 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE-S------------S
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC-C------------C
Confidence 11 1124678999999998876 332 256777776555543322 11 1 3
Q ss_pred eEEEEEcCCCCEEEEEecC------CeEEEEECCCCcce--eee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 144 IFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCS--LRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
...++|+||++.|+++... +.|++|++..+... ..+ .........+++. +++++. ++..+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lw-v~~~~-gv~~~~~- 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLW-SSSGT-GVCVFDS- 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEE-ECCSS-EEEEECT-
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEE-EecCC-cEEEECC-
Confidence 6789999999988887665 68999998754311 111 1123456778888 788844 44444 4999984
Q ss_pred ccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEe
Q 015371 215 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 258 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 258 (408)
.++.+..+..+. .+..++|.++++.|..++.++ +..++
T Consensus 266 ----~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 ----DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ----TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ----CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 455555555444 588899999998888877654 44443
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=2.6e-11 Score=100.11 Aligned_cols=225 Identities=9% Similarity=0.054 Sum_probs=143.9
Q ss_pred ceeeEecCC-ccEEEeecC-ceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc-
Q 015371 4 GREVNYSGR-GRFSAADSC-HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE- 80 (408)
Q Consensus 4 ~~~~~~s~d-g~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~- 80 (408)
.....|+++ +.+..++.. ..+.++-+.........+...+.+++++++|+++++ . ++.|.+||.+++........
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecC
Confidence 346788885 445555443 334444333333333445678999999999995554 4 45799999887643221111
Q ss_pred cccceeeEEEEEeCCCCceEEEeecC---------cEEEEEECCCC-ceeeeeeeeeeeeeeeecCCCCCccceEEEEEc
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASIC---------AIVNIVDVGSS-ARESLANVTIHKGLDFSADGDEDEFGIFSVKFS 150 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (408)
.......+..++++|+|+++++.... ..-.+|.+... +... ...... ....++|+
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~------------~pngi~~s 157 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVD------------ISNGLDWS 157 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEES------------BEEEEEEC
T ss_pred CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eeeccc------------cccceEEc
Confidence 11123468999999999976654321 23355555432 2211 111111 36789999
Q ss_pred CCCCEEEEE-ecCCeEEEEEC--CCCcce-----eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcc
Q 015371 151 TDGQELVAA-GSDNFIYVYDL--QANKCS-----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 222 (408)
Q Consensus 151 ~~~~~l~~~-~~dg~i~i~d~--~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (408)
|+++.|+.+ +.++.|.+|++ .++... ..+..+...+..+++. +++++.++...++.|..||.. .++.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~----tG~~ 232 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPV----TGKR 232 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTT----TCCE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCC----CceE
Confidence 999877555 45789999987 455431 2223344567899998 788888887778899999953 5777
Q ss_pred ceeeecccCCeEEEEec-CCCCeEEEeec
Q 015371 223 NGVLMGHLEGITFIDSR-RDGRYFISNGK 250 (408)
Q Consensus 223 ~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 250 (408)
+..+..+...+++++|. |+++.|.+++.
T Consensus 233 ~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 77777777789999998 88876665554
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.55 E-value=1.8e-12 Score=119.92 Aligned_cols=242 Identities=13% Similarity=0.081 Sum_probs=153.4
Q ss_pred ceeeEEEEEeCCCCceEEEee-----cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE
Q 015371 84 LRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 158 (408)
Q Consensus 84 ~~~~v~~~~~~~~~~~l~~~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (408)
+...+..++|||||++||.+. ....|++||+.+++.... .+... ....++|+ |++.|+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~--------------k~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDV--------------KFSGISWL-GNEGFFY 190 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEE--------------ESCCCEEE-TTTEEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCc--------------eeccEEEe-CCCEEEE
Confidence 344688899999999998543 235799999999875332 11111 13567899 9999998
Q ss_pred EecCC-------------eEEEEECCCCcc--eeee--cC-cCCCceEEEEecCCCCEEEEecC----CCeEEEEecccc
Q 015371 159 AGSDN-------------FIYVYDLQANKC--SLRI--PA-HKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCF 216 (408)
Q Consensus 159 ~~~dg-------------~i~i~d~~~~~~--~~~~--~~-~~~~v~~l~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 216 (408)
++.+. .|++|++.++.. ...+ .. |......+.|+ +++++|+.... +..|.++|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~- 268 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQ- 268 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTS-
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCC-
Confidence 88774 499999987653 2222 33 44557889999 88887754432 35899999752
Q ss_pred ccCCccceeeecccCCeEEEEecCCCCeEEEeec-C---CeEEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 217 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-D---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
.......+..+....... +++++..|+..+. + +.|..+|+.+...
T Consensus 269 --~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------------------------- 317 (693)
T 3iuj_A 269 --ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---------------------------- 317 (693)
T ss_dssp --TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----------------------------
T ss_pred --CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----------------------------
Confidence 122345556666666555 5666665554443 2 5788888876321
Q ss_pred cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC-CC--eEEEEECCCCceeEEEc-cCCCCeeeeeEeCCCCe
Q 015371 293 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DN--SVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPM 368 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 368 (408)
.....+..+.... . .++++++.|+.... ++ .|++||+..+ ....+. ...+.+..+.++++++.
T Consensus 318 ----~~~~~l~~~~~~~--~------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 318 ----AHWRDLIPERQQV--L------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp ----GGCEEEECCCSSC--E------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSC
T ss_pred ----cccEEEecCCCCE--E------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCE
Confidence 1112233332211 1 35566777776655 44 6899998744 445554 34456788889988886
Q ss_pred EEeecCC----CcEEEEeeCCCC
Q 015371 369 LISSSWD----CNIVRWEIPGIG 387 (408)
Q Consensus 369 l~s~~~d----g~v~iw~~~~~~ 387 (408)
|+....+ +.|+.||+.+++
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEecCCCCCCEEEEEECCCCe
Confidence 6554333 789999987654
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.54 E-value=2.1e-11 Score=103.99 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=152.7
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEEcCCCeeEEEeccc-cc---ceeeEEEEEeCCCCceEEEeec--CcE
Q 015371 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIET-KA---LRWTITDTSLSPDQRFLVYASI--CAI 108 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~--dg~ 108 (408)
.++++|||++|+++. .++.|.++|..+.+.+..+... .. .......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999988875 3678999999998766554322 00 0112446899999999998874 578
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCC-CEEEEEecCCeEEEEECCCCccee----eecCcC
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSL----RIPAHK 183 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~ 183 (408)
|.+.|+.+.+......... . ....|++ ..+++.+.||.+.+.+..+++... .+....
T Consensus 202 VsVID~~t~kvv~~I~v~g----------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~ 263 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD----------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED 263 (426)
T ss_dssp EEEEETTTTEEEEEEECCS----------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred EEEEECCCCeEEEEEEcCC----------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence 9999999887643322211 1 1222322 344555566666666665444331 122112
Q ss_pred CCc-eEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee----------cccCCeEEEEecCCCCeEEEeec--
Q 015371 184 SDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----------GHLEGITFIDSRRDGRYFISNGK-- 250 (408)
Q Consensus 184 ~~v-~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~-- 250 (408)
.++ ..+.+. +++..++..+..+.+.+.|+... .......+. ........+.++|+++.+++...
T Consensus 264 ~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~--~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 264 ELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAE--GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp SCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSS--CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred CceeeEeeec-CCCCEEEEEeCCCcEEEEeccCC--ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 222 234567 66666666677889999997411 000111110 01122223688999887766542
Q ss_pred --------CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccC
Q 015371 251 --------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 322 (408)
Q Consensus 251 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (408)
++.|.+.|+.+. +.+..+... ...+.+.|+|
T Consensus 341 ~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~sp 379 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINVSQ 379 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEECC
T ss_pred ccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEEcc
Confidence 357999998872 333333211 2356668999
Q ss_pred CCc-EEEEee-CCCeEEEEECCCCceeEEE
Q 015371 323 AQK-YIYTGS-SDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 323 ~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~ 350 (408)
||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999 888887 5899999999999999887
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.54 E-value=1.4e-11 Score=102.30 Aligned_cols=207 Identities=8% Similarity=-0.018 Sum_probs=131.6
Q ss_pred CceeeecccCceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEE
Q 015371 32 GPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (408)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 110 (408)
...++..+........|+|+|+ ++++...++.|..|+.. +. ...... +...+..++++++|+++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEEE
Confidence 3445666667788999999998 56677778899999974 32 222222 223588999999999776655667899
Q ss_pred EEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEE----Eec-------------CCeEEEEECCCC
Q 015371 111 IVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA----AGS-------------DNFIYVYDLQAN 173 (408)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~ 173 (408)
+|+.. ++........ ... ....+..+++.++|+..++ |.. .+.|+.+|..++
T Consensus 111 ~~~~~-g~~~~~~~~~--~~~--------~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRY--AGK--------RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp EECTT-SCEEEEECEE--TTE--------ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred EECCC-CCEEEEEecc--CCC--------ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 99976 4432221111 000 0113678999999987775 331 256888888777
Q ss_pred cceeeecCcCCCceEEEEecCCCCEEEEecCC------CeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEE
Q 015371 174 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDD------SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFI 246 (408)
Q Consensus 174 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 246 (408)
+..... .......++|+ ++++.|+.+... +.|.+|++.... ......+ .........+.+.++|++.
T Consensus 180 ~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw- 253 (305)
T 3dr2_A 180 PLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW- 253 (305)
T ss_dssp CCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-
T ss_pred cEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-
Confidence 654433 44566889999 888877766554 789999975211 0000111 1123345678899999944
Q ss_pred EeecCCeEEEEeCCC
Q 015371 247 SNGKDQTTKLWDIRK 261 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~ 261 (408)
++..+ .|.+|+...
T Consensus 254 v~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 254 SSSGT-GVCVFDSDG 267 (305)
T ss_dssp ECCSS-EEEEECTTS
T ss_pred EecCC-cEEEECCCC
Confidence 44444 499998753
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.53 E-value=7e-11 Score=98.88 Aligned_cols=221 Identities=11% Similarity=0.012 Sum_probs=138.5
Q ss_pred eeeEecCCcc-EEEeecC-ceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc
Q 015371 5 REVNYSGRGR-FSAADSC-HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (408)
Q Consensus 5 ~~~~~s~dg~-~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 82 (408)
....|+|++. ++.++.. ..+..+-+.........+...+.+++++|+|+++++. .+ .|.+||..+++... .....
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~-~~~~~ 128 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-HAELE 128 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-EECSS
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE-EeeCC
Confidence 4678999744 4444433 3333333322222222345689999999999877765 44 49999987764322 21111
Q ss_pred --cceeeEEEEEeCCCCceEEEeec------CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC
Q 015371 83 --ALRWTITDTSLSPDQRFLVYASI------CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ 154 (408)
Q Consensus 83 --~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (408)
.....+.+++++|+|+++++... .+.|..++ +++.... ..... ....++|+|+++
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~---~~~~~------------~~~~i~~s~dg~ 191 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL---FADIS------------IPNSICFSPDGT 191 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE---EEEES------------SEEEEEECTTSC
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe---eCCCc------------ccCCeEEcCCCC
Confidence 11236899999999987665432 24555555 3433221 11111 367899999998
Q ss_pred EEEEEe-cCCeEEEEECC--CC-cc-----eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCcccee
Q 015371 155 ELVAAG-SDNFIYVYDLQ--AN-KC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 225 (408)
Q Consensus 155 ~l~~~~-~dg~i~i~d~~--~~-~~-----~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 225 (408)
.++.+. .++.|.+||+. ++ +. ...+......+..+++. +++++.++...++.|..||. .++....
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~-----~g~~~~~ 265 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-----DGNHIAR 265 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-----TCCEEEE
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECC-----CCCEEEE
Confidence 776654 46899999986 55 32 11222234556788988 78887777767788999995 3455566
Q ss_pred eecccCCeEEEEec-CCCCeEEEeecC
Q 015371 226 LMGHLEGITFIDSR-RDGRYFISNGKD 251 (408)
Q Consensus 226 ~~~~~~~i~~~~~~-~~~~~l~~~~~d 251 (408)
+..+...+++++|. ++++.|++++..
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECCCCCcEEEEEecCCCCEEEEEecC
Confidence 66666679999998 888766555443
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=1.2e-12 Score=109.82 Aligned_cols=269 Identities=7% Similarity=-0.114 Sum_probs=164.2
Q ss_pred cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee----------cCcEEEEEECCCCceeeeeeeeeeeeee
Q 015371 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDVGSSARESLANVTIHKGLD 132 (408)
Q Consensus 63 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (408)
+|.+.|..+++.+..+..... + .+.++||+++++++. .++.|.+||..+.+............
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 788999999977776554443 4 699999999999886 36889999999987644333210000
Q ss_pred eecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEE--EECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeE
Q 015371 133 FSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYV--YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 208 (408)
Q Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 208 (408)
+.. ......++++|||++++++.. +..|.+ +|..+ +..+... +. ....|.....+++.+.||.+
T Consensus 120 ~~~-----g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 120 FSV-----GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp CCB-----SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSC
T ss_pred ccc-----CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCE
Confidence 000 002557899999999999875 467888 88876 3444321 11 12233444566777788988
Q ss_pred EEEecccccc-CCccce----eeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeec
Q 015371 209 KVWDRRCFIS-KGRANG----VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 283 (408)
Q Consensus 209 ~iwd~~~~~~-~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
.+.|+..... .++... .+.-...+. . .+++..++..+. +.+.+.|+......
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~------------------ 244 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT------------------ 244 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE------------------
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce------------------
Confidence 8888642000 011110 111112233 3 566666666666 89999998642110
Q ss_pred ccccceeeccCCCcceeeeeccc----ceeeEEEEEeeccccCCCcEEEEeeC-C--------CeEEEEECCCCceeEEE
Q 015371 284 YPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS-D--------NSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~ 350 (408)
.+..+.... .............++||++.++++.. + +.+.++|+.+++.+..+
T Consensus 245 --------------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 245 --------------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp --------------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred --------------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 000000000 00000000000247788888887643 2 35679999999998888
Q ss_pred ccCCCCeeeeeEeCCCC-eEEeec-CCCcEEEEeeCCCCC
Q 015371 351 DFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGE 388 (408)
Q Consensus 351 ~~~~~~v~~~~~~~~~~-~l~s~~-~dg~v~iw~~~~~~~ 388 (408)
.... ....++|+||++ ++++.. .++.|.++|+.+.+.
T Consensus 311 ~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 311 SNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 6443 588999999998 556666 599999999987653
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.53 E-value=4.6e-11 Score=99.95 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=140.6
Q ss_pred EEEEEeCCCCc-eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 88 ITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 88 v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.....|+|++. .+++...++.|..||..+++.... ... ..+.++.++++|+++++. . ..|.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---~~~-------------~~v~~i~~~~dg~l~v~~-~-~gl~ 112 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH---ALP-------------FMGSALAKISDSKQLIAS-D-DGLF 112 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---ECS-------------SCEEEEEEEETTEEEEEE-T-TEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE---ECC-------------CcceEEEEeCCCeEEEEE-C-CCEE
Confidence 44578999754 555666778999999987654321 111 148899999999866654 3 4599
Q ss_pred EEECCCCcceeeecC----cCCCceEEEEecCCCCEEEEecCC----CeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 167 VYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 167 i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
+||..+++....... ....+.+++++ ++++++++...+ +...+|.+. .++. ..+..+......++|
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~----~g~~-~~~~~~~~~~~~i~~ 186 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGKV-TKLFADISIPNSICF 186 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTEE-EEEEEEESSEEEEEE
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe----CCcE-EEeeCCCcccCCeEE
Confidence 999988765432221 12357889999 788876654321 234444432 1222 222233445678999
Q ss_pred cCCCCeEEEe-ecCCeEEEEeCC--CC-cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEE
Q 015371 239 RRDGRYFISN-GKDQTTKLWDIR--KM-SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 314 (408)
Q Consensus 239 ~~~~~~l~~~-~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+|+++.++.+ +.++.|.+||+. ++ .... .+.+..+..... .
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~~------~ 231 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIKG------G 231 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSSS------E
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCCC------C
Confidence 9999876554 457889999986 31 1000 000111111110 1
Q ss_pred EeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEe-CCCCeEEee
Q 015371 315 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLISS 372 (408)
Q Consensus 315 ~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~ 372 (408)
...++++++|++.++...++.|.+||. +++.+..+..+...+++++|+ ++++.|+.+
T Consensus 232 p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 232 MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 123356778887777767789999998 677778887777789999998 888755443
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.46 E-value=4.4e-10 Score=96.27 Aligned_cols=268 Identities=9% Similarity=-0.030 Sum_probs=162.6
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccc------eeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL------RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
++..+++++.++.|..+|..+++.+......... ...+.+. ...++..+++++.++.+..+|..+++......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3567888888899999999988766554332110 1122211 11245677888889999999999887643332
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCc-----eEEEEecCCCCEE
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGHLI 199 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l 199 (408)
..... ...++ . .+..+++++.++.|..+|.++++.+.......... ...... +..+
T Consensus 131 ~~~~~----------~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v 191 (376)
T 3q7m_A 131 VAGEA----------LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAA 191 (376)
T ss_dssp CSSCC----------CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEE
T ss_pred CCCce----------EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEE
Confidence 21110 00011 1 13478888889999999999998887765432211 222332 4567
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccC-------CeEEEEecC--CCCeEEEeecCCeEEEEeCCCCcCcccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-------GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNS 270 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 270 (408)
++++.++.+..+|.. .++.......... .+..+...| .+..++.++.++.+..+|.++++
T Consensus 192 ~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~------- 260 (376)
T 3q7m_A 192 VVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ------- 260 (376)
T ss_dssp EECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-------
T ss_pred EEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-------
Confidence 888889999999964 4554444332110 000011111 24567777789999999988732
Q ss_pred ccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEE
Q 015371 271 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (408)
.+....... .. .+.. ++..++.++.++.|..+|..+++.+...
T Consensus 261 ---------------------------~~w~~~~~~----~~----~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 261 ---------------------------IMWKRELGS----VN----DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ---------------------------EEEEECCCC----EE----EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ---------------------------EEeeccCCC----CC----CceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 121111111 00 1111 2567888888999999999999988776
Q ss_pred cc-CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 351 DF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 351 ~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.. ....+...... +..|+.++.+|.|+.+|..+++.
T Consensus 304 ~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 304 SDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp CTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcE
Confidence 52 22333444443 45788888899999999888754
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.46 E-value=4.8e-11 Score=109.48 Aligned_cols=309 Identities=10% Similarity=0.088 Sum_probs=178.3
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEeccccccee--------eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW--------TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
+..|++++.++.|.-+|..+++.+.+......... ....+++ ++..+++++.|+.+..+|..+++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777788999999999987776543221100 0011222 4667888889999999999998775433
Q ss_pred eee-eeeeeeeecCCCCCccceEE-EEEcCCCCEEEEEec------CCeEEEEECCCCcceeeecCcCCC----------
Q 015371 124 NVT-IHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD---------- 185 (408)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~---------- 185 (408)
... .... ...+.. ... .+..+++++. ++.|+.+|.++++.+..+......
T Consensus 155 ~~~~~~~~----------~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~ 222 (677)
T 1kb0_A 155 NTFEGQKG----------SLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESM 222 (677)
T ss_dssp ETTTTCCS----------SCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred cCCcCcCc----------CcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccc
Confidence 321 0000 000110 011 1345555553 689999999999988766432211
Q ss_pred ----------------------ceEEEEecCCCCEEEEecCCC-------------------eEEEEeccccccCCccce
Q 015371 186 ----------------------VNTVCFADETGHLIFSGSDDS-------------------LCKVWDRRCFISKGRANG 224 (408)
Q Consensus 186 ----------------------v~~l~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~ 224 (408)
...+++. ++..+++.++.++ .|..+|.+ +++.+-
T Consensus 223 ~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~W 297 (677)
T 1kb0_A 223 KRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYKW 297 (677)
T ss_dssp HHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEE
T ss_pred ccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEEE
Confidence 1357787 6777888877664 48888864 566555
Q ss_pred eeec--cc-------CCeEEEEecCCC---CeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeec
Q 015371 225 VLMG--HL-------EGITFIDSRRDG---RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 292 (408)
Q Consensus 225 ~~~~--~~-------~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (408)
.+.. |. .....+....+| ..++.++.+|.++++|.++++......... ..|... +. .....+.
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~~~~~-~d--~~g~~~~ 372 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP--VNWASG-YD--KHGKPIG 372 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEE-EC--TTSCEEE
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc--cCcccc-cC--CCCceee
Confidence 4432 21 122223334467 678999999999999999876543321111 001000 00 0000000
Q ss_pred cC----CCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC------------------------------------
Q 015371 293 HP----HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------------------------------------ 332 (408)
Q Consensus 293 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------------------------------------ 332 (408)
.+ .+.....+.+..... .-..++++|++.++++...
T Consensus 373 ~~~~~~~~~~~~~~P~~~G~~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 448 (677)
T 1kb0_A 373 IAAARDGSKPQDAVPGPYGAH----NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA 448 (677)
T ss_dssp CGGGGCTTSCEECSSCTTCSS----CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred ccccCcCCCccEECcCccccc----CCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccc
Confidence 00 000000000000000 0012345666666655432
Q ss_pred -------CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 333 -------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 333 -------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
.|.|..||+.+++.+-++. +..++....+...+.+++.++.||.+++||..+++..
T Consensus 449 ~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 449 EPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp SCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999888876 3445666667778888888999999999999987653
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.45 E-value=3.4e-11 Score=110.69 Aligned_cols=312 Identities=8% Similarity=0.052 Sum_probs=175.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEeccccccee-------eE-EEEEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW-------TI-TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~v-~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
+..+++++.++.|+-+|..+++.+.+......... .+ ..+.. .+..+++++.|+.+..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55677788889999999999987776533211100 00 01112 3567888889999999999999875433
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe------cCCeEEEEECCCCcceeeecCcC--------------
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLRIPAHK-------------- 183 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~-------------- 183 (408)
........ .......++ + .++ .+++++ .+|.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~----~~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 148 DTRADHKR----SYTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp ECCSCTTS----CCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred cCcCCCCC----CccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 32100000 000000011 1 144 455553 26899999999999877664210
Q ss_pred -----------------CCceEEEEecCCCCEEEEecCCCe-------------------EEEEeccccccCCccceeee
Q 015371 184 -----------------SDVNTVCFADETGHLIFSGSDDSL-------------------CKVWDRRCFISKGRANGVLM 227 (408)
Q Consensus 184 -----------------~~v~~l~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~ 227 (408)
.....+++. ++..+++.++.++. |..+|.+ +++.+-.+.
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W~~~ 292 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVWHYQ 292 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEEEEE
T ss_pred cccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeEeee
Confidence 111257788 67778888887764 8899965 666665554
Q ss_pred c--cc-------CCeEEEEecCCCC---eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeec---
Q 015371 228 G--HL-------EGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK--- 292 (408)
Q Consensus 228 ~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 292 (408)
. |. ..........+|+ .++.++.+|.++++|.++++......... ..|....... ....+.
T Consensus 293 ~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~~~~--~~~pi~~~~ 368 (689)
T 1yiq_A 293 TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP--QSWTKGMDMK--TGRPILDEE 368 (689)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEEEETT--TTEEEECHH
T ss_pred cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc--cccccccCcc--CCCcccchh
Confidence 3 21 1222223333565 78899999999999998876543221111 1111100000 000000
Q ss_pred ----cCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC------------------------------------
Q 015371 293 ----HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------------------------------------ 332 (408)
Q Consensus 293 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------------------------------------ 332 (408)
.+..+......+..... .-..++++|+..++++...
T Consensus 369 ~~~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 444 (689)
T 1yiq_A 369 NAAYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAE 444 (689)
T ss_dssp HHCTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHH
T ss_pred hccccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccc
Confidence 00000000000000000 0001234444444444311
Q ss_pred ---------CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 333 ---------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 333 ---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
+|.|+.||+.+++.+-++..+. ++..-.+...+.+++.++.||.|+.||..+++..
T Consensus 445 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 445 GLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp HHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4789999999999988886543 3444466677889999999999999999988764
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.44 E-value=4.8e-09 Score=89.78 Aligned_cols=262 Identities=11% Similarity=0.044 Sum_probs=158.6
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKG 130 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (408)
++..+++++.++.|..+|..+++............ ..... .+..+++++.++.+..+|..+++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~---~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL---SRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC---SCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE---cCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 45677888889999999999887665443322111 11111 24577788889999999998887643332211100
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCC----------c-eEEEEecCCCCEE
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD----------V-NTVCFADETGHLI 199 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------v-~~l~~~~~~~~~l 199 (408)
.. .. ....... +..+++++.++.|..+|..+++.+......... + ..... .+..+
T Consensus 177 ---~~--~~----~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v 242 (376)
T 3q7m_A 177 ---SL--RG----ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVV 242 (376)
T ss_dssp -------CC----CCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEE
T ss_pred ---ee--cC----CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEE
Confidence 00 00 0111111 346888888999999999999887766432110 1 11112 24567
Q ss_pred EEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccc
Q 015371 200 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 279 (408)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 279 (408)
+.++.++.+..+|.+ .++...... ......+.. ++..++.++.++.+..+|..+++.
T Consensus 243 ~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~--------------- 299 (376)
T 3q7m_A 243 FALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT--------------- 299 (376)
T ss_dssp EEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE---------------
T ss_pred EEEecCcEEEEEECC----CCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE---------------
Confidence 778889999999964 455443332 233444444 366788888899999999887432
Q ss_pred eeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeee
Q 015371 280 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 359 (408)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (408)
+.......... ...+.. .+..|++++.+|.|+++|..+++.+.........+..
T Consensus 300 -------------------~w~~~~~~~~~-----~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~ 353 (376)
T 3q7m_A 300 -------------------LWTQSDLLHRL-----LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQT 353 (376)
T ss_dssp -------------------EEEECTTTTSC-----CCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCS
T ss_pred -------------------EEeecccCCCc-----ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCccee
Confidence 11111000000 000111 2567888899999999999999988877654444433
Q ss_pred -eeEeCCCCeEEeecCCCcEEEEe
Q 015371 360 -CCWHPIYPMLISSSWDCNIVRWE 382 (408)
Q Consensus 360 -~~~~~~~~~l~s~~~dg~v~iw~ 382 (408)
.... +..|+.++.+|.|+.|+
T Consensus 354 ~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 354 EPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCEEE--CCEEEEEeCCCEEEEEe
Confidence 2332 45677888999999986
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=1.5e-10 Score=106.48 Aligned_cols=322 Identities=9% Similarity=0.014 Sum_probs=172.8
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC---CCceEEEee------cCcEEEEEECCCCceee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQRFLVYAS------ICAIVNIVDVGSSARES 121 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------~dg~i~~w~~~~~~~~~ 121 (408)
++..+++++.|+.|..+|..+++.+.......... ....+..+| ++. +++++ .+|.|..||..+++...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 35678888899999999999998776654320100 011112222 444 44443 36899999999998754
Q ss_pred eeeeeeee-eeee-------e-cCCC--------CCccceEEEEEcCCCCEEEEEecCCe-------------------E
Q 015371 122 LANVTIHK-GLDF-------S-ADGD--------EDEFGIFSVKFSTDGQELVAAGSDNF-------------------I 165 (408)
Q Consensus 122 ~~~~~~~~-~~~~-------~-~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~-------------------i 165 (408)
........ ...+ . .... ........++++|++.++++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 33211100 0000 0 0000 00011235788888888998887763 9
Q ss_pred EEEECCCCcceeeecC--cC-------CCceEEEEecCCCC---EEEEecCCCeEEEEeccccccCCccceeeeccc---
Q 015371 166 YVYDLQANKCSLRIPA--HK-------SDVNTVCFADETGH---LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--- 230 (408)
Q Consensus 166 ~i~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 230 (408)
..+|..+|+.+..++. |. .++...... .++. .++.++.+|.++++|.+ +++.+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEecccccccccc
Confidence 9999999998887753 21 111111222 2444 78899999999999965 444432111000
Q ss_pred -------------------------C-----------CeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccc
Q 015371 231 -------------------------E-----------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 274 (408)
Q Consensus 231 -------------------------~-----------~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 274 (408)
. .-..++++|+..++++...+....++.............. ..
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~-~~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM-YQ 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS-CC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc-cc
Confidence 0 0113678888888888776655555544321000000000 00
Q ss_pred ccccceeec------------ccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 275 YDWDYRWME------------YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 275 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
......... .......+....++.+-....+... +...++..+.+++.|+.||.++.||.+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-------~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-------NGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-------CCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-------cCccceECCCEEEEECCCCcEEEEECC
Confidence 000000000 0011111222223333333322211 111233357899999999999999999
Q ss_pred CCceeEEEccCCCC-eeeeeEeCCCC-eEEeecC--------------------CCcEEEEeeCCCC
Q 015371 343 SGAQVAKLDFHNAP-VRDCCWHPIYP-MLISSSW--------------------DCNIVRWEIPGIG 387 (408)
Q Consensus 343 ~~~~~~~~~~~~~~-v~~~~~~~~~~-~l~s~~~--------------------dg~v~iw~~~~~~ 387 (408)
+|+.+.+++...+. -.-+.|..+|+ ++++.+. .+.+.+|.+....
T Consensus 505 tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~ 571 (689)
T 1yiq_A 505 TGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA 571 (689)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred CCccceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence 99999888754332 23467778888 4443321 2367888887644
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.40 E-value=8.1e-13 Score=112.40 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=111.7
Q ss_pred CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc
Q 015371 96 DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 175 (408)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 175 (408)
++..+++++.||.|+.||..+++....... . ++.+..+..++..+++++.||.|+.||.++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----D------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----C------------CSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----C------------CceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 577899999999999999999877543332 1 233333445677778778899999999999987
Q ss_pred eeeecCcCCC-ce-EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCe
Q 015371 176 SLRIPAHKSD-VN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 253 (408)
Q Consensus 176 ~~~~~~~~~~-v~-~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 253 (408)
+..+..+... +. +..+ ..+..+++++.++.++.||.+ +++.+..+..+. ...++|++..+++++.|+.
T Consensus 72 ~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~ 141 (369)
T 2hz6_A 72 LTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT 141 (369)
T ss_dssp SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEE
T ss_pred eeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecCCE
Confidence 7665433211 11 1111 135578888899999999965 566555554433 2345668888999999999
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCC---cEEEEe
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ---KYIYTG 330 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~ 330 (408)
|+.||.++++.. ..+... ....+.++++. ..++++
T Consensus 142 v~a~d~~tG~~~----------------------------------W~~~~~--------~~~~~~~~~~~~~~~~v~~~ 179 (369)
T 2hz6_A 142 ITMYDTKTRELR----------------------------------WNATYF--------DYAASLPEDDVDYKMSHFVS 179 (369)
T ss_dssp EECCCSSSSSCC----------------------------------CEEEEE--------EECCBCCCCCTTCCCCEEEE
T ss_pred EEEEECCCCCEE----------------------------------EeEecc--------cccCccccCCccccceEEEE
Confidence 999999874322 111110 01222333322 567778
Q ss_pred eCCCeEEEEECCCCceeEEEccCCCCee-eeeEeCCCC
Q 015371 331 SSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYP 367 (408)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~ 367 (408)
+.||.|+.||..+++.+..... ..++. ...+++++.
T Consensus 180 ~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 180 NGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp ETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred CCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 8999999999999998877763 34443 344555654
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.40 E-value=4.5e-11 Score=100.49 Aligned_cols=269 Identities=13% Similarity=0.112 Sum_probs=162.1
Q ss_pred ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
+...+.++...+++.+ ..++.+ +..+|. +++.......... ......+. +..|.+++.++.+..+|.. ++
T Consensus 58 ~~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~~---~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKKA---IVSDFTIF--EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC--------CCEEEE--TTEEEEECTTSEEEEECTT-SC
T ss_pred CCCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCCC---cccCceEE--CCEEEEEecCCEEEEEcCC-CC
Confidence 3445677778777764 444444 888885 4433222111111 11122222 4557778888999999987 54
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCE
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 198 (408)
...... .... .+.++...+++. +++++.++.|..+|.. ++....+......+.++... .++.+
T Consensus 128 ~~~~~~--~~~~------------~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~l 190 (330)
T 3hxj_A 128 EKWRFK--TKKA------------IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGTI 190 (330)
T ss_dssp EEEEEE--CSSC------------CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCCE
T ss_pred EEEEEc--CCCc------------eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCEE
Confidence 322211 1111 245556666776 6667778999999998 77766666556667777776 56665
Q ss_pred EEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccccc
Q 015371 199 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 278 (408)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 278 (408)
.+ ++ +.|..+| . .+............+.++...+++. |..++.++.+..+|...
T Consensus 191 ~v-~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g----------------- 244 (330)
T 3hxj_A 191 YF-GS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG----------------- 244 (330)
T ss_dssp EE-ES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-----------------
T ss_pred EE-Ee--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-----------------
Confidence 54 44 7888898 3 4444444444456677888888776 55566678888887432
Q ss_pred ceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCee
Q 015371 279 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 358 (408)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (408)
..+..+...... ...+.+.+++ .|..++.+|.|..+|. +++.+..+......+.
T Consensus 245 ------------------~~~~~~~~~~~~------~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~ 298 (330)
T 3hxj_A 245 ------------------TEKWRFKTGKRI------ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIA 298 (330)
T ss_dssp ------------------CEEEEEECSSCC------CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCS
T ss_pred ------------------CEeEEeeCCCCc------cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCcccc
Confidence 112222111100 0112233334 5777888889999995 7877777765666778
Q ss_pred eeeEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 359 DCCWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 359 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
++...+++. |..++.+|.+++...+..+
T Consensus 299 ~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 299 TPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 888878776 4557889999998776543
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=2.5e-11 Score=102.41 Aligned_cols=233 Identities=13% Similarity=0.037 Sum_probs=143.7
Q ss_pred eEEEEEeCCCCceEEEee--cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---
Q 015371 87 TITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--- 161 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 161 (408)
.+..++++|+|+.+++.. .++.++||.+.+++.. .+.... .....+...+..++++++++++++-..
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~-----~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQS-----GNAIITFDTVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCC-----SSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcc-----cCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence 688899999999888754 2343566666533321 111100 112234457999999999876555433
Q ss_pred --CCeEEEEECCCCcceeeecC------cCCCceEEEEecCCCCEEEEec---CCCeEEEEeccccccCCccceeeeccc
Q 015371 162 --DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHL 230 (408)
Q Consensus 162 --dg~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 230 (408)
++.|.+||+.+++.+..+.. +...+..+++.+.++..+++.. .++.|.+||+. .++....+.+|.
T Consensus 90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~~~ 165 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQGYP 165 (343)
T ss_dssp TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTTCT
T ss_pred CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecCCC
Confidence 57899999998886665532 2245689999944455556655 67899999964 444444444432
Q ss_pred CCeE-EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccccee
Q 015371 231 EGIT-FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 309 (408)
Q Consensus 231 ~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
.... ...+.++|..+.+.+.++.+..|...
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~------------------------------------------------- 196 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG------------------------------------------------- 196 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCC-------------------------------------------------
T ss_pred cccccccceeECCEEEEeccCCCceeceecc-------------------------------------------------
Confidence 2110 12344456555555666665444211
Q ss_pred eEEEEEeeccccCCCcEEEEeeCCC-eEEEEECC---CCc-----eeE--EEccCCCCeeeeeEeCCCCeEEeecCCCcE
Q 015371 310 TLIRCYFSPEYSTAQKYIYTGSSDN-SVYIYDLV---SGA-----QVA--KLDFHNAPVRDCCWHPIYPMLISSSWDCNI 378 (408)
Q Consensus 310 ~~~~~~~~~~~s~~~~~l~~~~~dg-~i~vwd~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v 378 (408)
...++++||++.|+.+..++ .++.++.. .+. ... ...++......++++++|.++++...++.|
T Consensus 197 -----~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V 271 (343)
T 2qe8_A 197 -----VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAI 271 (343)
T ss_dssp -----EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEE
T ss_pred -----cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeE
Confidence 12347888999888887765 55555532 111 000 111334456789999999999998889999
Q ss_pred EEEeeCC
Q 015371 379 VRWEIPG 385 (408)
Q Consensus 379 ~iw~~~~ 385 (408)
.+||..+
T Consensus 272 ~~~d~~~ 278 (343)
T 2qe8_A 272 GVITSAD 278 (343)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999833
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=4.7e-10 Score=102.98 Aligned_cols=320 Identities=10% Similarity=0.027 Sum_probs=171.4
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEeccc-ccc-eeeEEEEEeCC--CCceEEEeec------CcEEEEEECCCCcee
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIET-KAL-RWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARE 120 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~--~~~~l~~~~~------dg~i~~w~~~~~~~~ 120 (408)
++..+++++.|+.|..+|..+++.+...... ... ...+. -.| .+..+++++. ++.|+.+|..+++..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~---~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTIT---GAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccc---cCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 3567888889999999999999877665433 100 00111 111 2345555543 689999999998875
Q ss_pred eeeeeeeeee-eee--------ecCCC---------CCccceEEEEEcCCCCEEEEEecCC-------------------
Q 015371 121 SLANVTIHKG-LDF--------SADGD---------EDEFGIFSVKFSTDGQELVAAGSDN------------------- 163 (408)
Q Consensus 121 ~~~~~~~~~~-~~~--------~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg------------------- 163 (408)
.......... ..+ ..... ........+++++++..++.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 4333211110 000 00000 0001123578888888888887654
Q ss_pred eEEEEECCCCcceeeecC--cC-------CCceEEEEecCCC---CEEEEecCCCeEEEEeccccccCCccceeeeccc-
Q 015371 164 FIYVYDLQANKCSLRIPA--HK-------SDVNTVCFADETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL- 230 (408)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 230 (408)
.|..+|..+++.+..++. |. ....-+... .++ ..++.++.+|.+.++|.+ +++.+.......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPV 358 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCC
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEecccccccc
Confidence 599999999998877653 21 112222222 355 689999999999999965 455544332110
Q ss_pred ----------CCe------------------------EEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc--cccccccc
Q 015371 231 ----------EGI------------------------TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT--TDNSRLRD 274 (408)
Q Consensus 231 ----------~~i------------------------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~ 274 (408)
.++ ..++++|++.++++...+-...++......... ........
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 000 146788888888877665444444332100000 00000000
Q ss_pred ccccceeec-c------cccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 275 YDWDYRWME-Y------PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 275 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
..+...... . ......+....++.+-.+.... ..+...++.++.+++.++.||.+++||.++++.+
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-------CCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 000000000 0 0001111111222222222111 0112234445788889999999999999999999
Q ss_pred EEEccCCC-CeeeeeEeCCCCe-EEeecC----------------CCcEEEEeeCC
Q 015371 348 AKLDFHNA-PVRDCCWHPIYPM-LISSSW----------------DCNIVRWEIPG 385 (408)
Q Consensus 348 ~~~~~~~~-~v~~~~~~~~~~~-l~s~~~----------------dg~v~iw~~~~ 385 (408)
..+....+ .-.-+.|..+|+. ++..+. .+.+..|.+..
T Consensus 512 w~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 512 WEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 99874432 2234566788874 443222 46889999874
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.37 E-value=2.8e-10 Score=99.46 Aligned_cols=245 Identities=17% Similarity=0.133 Sum_probs=153.4
Q ss_pred CCCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE-c-CCCCEEEEEe-----------
Q 015371 95 PDQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF-S-TDGQELVAAG----------- 160 (408)
Q Consensus 95 ~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~----------- 160 (408)
+||+++.+... ++.|.+.|+.+.+...+..++... .+..+++ + |+++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~-------------~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK-------------GIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC-------------SEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC-------------CCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 37888877654 567999999998876544443322 3778887 5 8999998885
Q ss_pred -------cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCC---------------e-----------
Q 015371 161 -------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS---------------L----------- 207 (408)
Q Consensus 161 -------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg---------------~----------- 207 (408)
.++.+.+.|.++.+...++.--. ....++++ ++++++++.+.+. .
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 24689999999998888776423 45778888 7888888877553 2
Q ss_pred ------------EEEEeccccccCCcc-ceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCccccccccc
Q 015371 208 ------------CKVWDRRCFISKGRA-NGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 208 ------------i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
|.+.|.+.. .+.. +..+. -.....++.++|||+++++++ .+.+|.++|+.+........
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~---- 316 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKE--ASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---- 316 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGG--GCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC----
T ss_pred eccCCCeeEECcEEEEeCccc--CCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc----
Confidence 444443310 0122 22222 223456789999999776655 47889999998632100000
Q ss_pred cccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCC----------
Q 015371 274 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS---------- 343 (408)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------- 343 (408)
+ .+..........- ...+..+|+++|....+.-.|+.|.+||+.+
T Consensus 317 -----------------l-~~~~~v~~~v~vG-------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 317 -----------------A-DPRSAVVAEPELG-------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp -----------------C-CGGGGEEECCBCC-------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred -----------------c-CcccceEEEcCCC-------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 0 0000111111111 1234447899995445566799999999977
Q ss_pred CceeEEEccCCCC-----eeeeeEeCCCCeEEeec---CCCcE----------EEEeeCCC
Q 015371 344 GAQVAKLDFHNAP-----VRDCCWHPIYPMLISSS---WDCNI----------VRWEIPGI 386 (408)
Q Consensus 344 ~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~---~dg~v----------~iw~~~~~ 386 (408)
.+.+.++..|-.+ -..+..+|||++|+++. .|..+ .++|+.++
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 5667777655432 13346789999988863 34431 77888544
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.35 E-value=3.9e-13 Score=114.38 Aligned_cols=183 Identities=9% Similarity=-0.005 Sum_probs=107.9
Q ss_pred CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccC
Q 015371 152 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 231 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 231 (408)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+. .++.++++++.||.|+.||.. .++.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence 567899999999999999999999888875 455555555 567778888999999999964 4444433332211
Q ss_pred -CeE-EEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccccee
Q 015371 232 -GIT-FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 309 (408)
Q Consensus 232 -~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
.+. +..+. ++..+++++.|+.++.||.++++. +..+..+..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~----------------------------------~w~~~~~~~-- 123 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK----------------------------------QQTLSSAFA-- 123 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE----------------------------------EEEecCCCc--
Confidence 110 01111 345677888899999999988433 222222110
Q ss_pred eEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCC---CeEEeecCCCcEEEEeeCCC
Q 015371 310 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY---PMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 310 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~v~iw~~~~~ 386 (408)
..++|++..+++++.|+.|+.||.++++.+..+..+. ....+++++. ..+++++.||.|+.||..++
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1233467889999999999999999998776654321 2334444432 45777888999999999877
Q ss_pred CC
Q 015371 387 GE 388 (408)
Q Consensus 387 ~~ 388 (408)
+.
T Consensus 194 ~~ 195 (369)
T 2hz6_A 194 DV 195 (369)
T ss_dssp CE
T ss_pred cE
Confidence 65
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=5.3e-11 Score=99.90 Aligned_cols=249 Identities=10% Similarity=0.025 Sum_probs=150.3
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEEcCCCeeEEEecccccc----eeeEEEEEeCCCCceEEEeec--CcE
Q 015371 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKAL----RWTITDTSLSPDQRFLVYASI--CAI 108 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~ 108 (408)
.++++||+++++++. .++.|.+||..+.+.+..+...... ......++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999886 3678999999998777665432100 013456899999999998875 457
Q ss_pred EEE--EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-EEEEEecCCeEEEEECCC-----Cccee---
Q 015371 109 VNI--VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQA-----NKCSL--- 177 (408)
Q Consensus 109 i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-----~~~~~--- 177 (408)
+.+ +|..+ . ..+... .. ..+.|+++ .+++.+.||.+.+.|+++ ++...
T Consensus 149 v~V~~iD~~t--v---~~i~v~--------------~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t 207 (368)
T 1mda_H 149 AGLSVPGASD--D---QLTKSA--------------SC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp EEEEETTTEE--E---EEEECS--------------SC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred EEEEEEchhh--c---eEEECC--------------Cc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee
Confidence 888 88765 1 111110 01 11234332 344455678888888876 43321
Q ss_pred -eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeec----------ccCCeEEEEecCCCCeEE
Q 015371 178 -RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYFI 246 (408)
Q Consensus 178 -~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~ 246 (408)
.+.....+. . . +++..++..+. +.+.+.|+.. ........+.- .......+.++|+++.++
T Consensus 208 ~~i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~--~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly 279 (368)
T 1mda_H 208 GAQNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPA--AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279 (368)
T ss_dssp TTSCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCS--SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred eeeeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCC--CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence 122222333 3 5 44555555555 8999999641 01111111110 111222267999999887
Q ss_pred Eeec---------CCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 247 SNGK---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 247 ~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
++.. ++.+.++|+.+. +.+..+... ...+.
T Consensus 280 V~~~~~~~~~~~~~~~~~ViD~~t~----------------------------------~vv~~i~vg-------~~p~g 318 (368)
T 1mda_H 280 ILTVEHSRSCLAAAENTSSVTASVG----------------------------------QTSGPISNG-------HDSDA 318 (368)
T ss_dssp EEEEECSSCTTSCEEEEEEEESSSC----------------------------------CEEECCEEE-------EEECE
T ss_pred EEeccccCcccccCCCEEEEECCCC----------------------------------eEEEEEECC-------CCcce
Confidence 6543 235669999873 223332211 13455
Q ss_pred ccccCCCcE-EEEee-CCCeEEEEECCCCceeEEEccCCCCeeeeeEeC
Q 015371 318 PEYSTAQKY-IYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 364 (408)
Q Consensus 318 ~~~s~~~~~-l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (408)
+.++|||++ +++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 319 i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 678899985 55555 489999999999999999975443 45566654
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.34 E-value=8.7e-09 Score=87.04 Aligned_cols=247 Identities=11% Similarity=0.054 Sum_probs=142.7
Q ss_pred CCCceEEEe-ecCcEEEEEECCCC--ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC------CeE
Q 015371 95 PDQRFLVYA-SICAIVNIVDVGSS--ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFI 165 (408)
Q Consensus 95 ~~~~~l~~~-~~dg~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i 165 (408)
++.++|++. ..++.|.++|+.+. +.+....+... .+ ... ........+...|+| .++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~-~~-~~~---~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE-EV-KKV---SGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH-HH-HHH---HCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh-hc-ccc---cCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 778877754 46788999999744 22222222100 00 000 000135667888999 66666555 789
Q ss_pred EEEECCCCcceeeecCcCC---CceEEEEecCCCCEEEEec-------------------CCCeEEEEeccccccCCccc
Q 015371 166 YVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS-------------------DDSLCKVWDRRCFISKGRAN 223 (408)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~ 223 (408)
.++|.++.+.+.++..... .-..+-|+ |+++.+++.. .+.+|.+||+. ..+..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~----~~k~~ 241 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR----KRKRI 241 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT----TTEEE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC----CCcEe
Confidence 9999999998888863222 23457788 7888888874 36899999975 44555
Q ss_pred eeeecc--cCCeEEEEe--cCCCCeEEEeec------CCeEEEEeCCCCcCccccccccccccccceeecccccceeecc
Q 015371 224 GVLMGH--LEGITFIDS--RRDGRYFISNGK------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 293 (408)
Q Consensus 224 ~~~~~~--~~~i~~~~~--~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (408)
..+... ......+.| +|+++++.+++. +++|.+|....+.- .... .+..
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~--~~~~-------------------vIdi 300 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW--NAEK-------------------VIEI 300 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE--EEEE-------------------EEEE
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce--eEEE-------------------EEeC
Confidence 555432 123344545 999998877764 56787776543110 0000 0000
Q ss_pred CCCcceeeeecccc-eeeEEEEEeeccccCCCcEEEEeeC-CCeEEEEECCC---CceeEEEccCC--------------
Q 015371 294 PHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVS---GAQVAKLDFHN-------------- 354 (408)
Q Consensus 294 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~vwd~~~---~~~~~~~~~~~-------------- 354 (408)
+..+....+..-.. ....-.....+.+|+||++|.++.. .+.|.+||+.. .+.+..+....
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ 380 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT 380 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence 00000000000000 0000012334468899999988876 68999999863 34555553221
Q ss_pred CCeeeeeEeCCCCeEEeec
Q 015371 355 APVRDCCWHPIYPMLISSS 373 (408)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~ 373 (408)
+.-..++++|||++|+++.
T Consensus 381 ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEcCCCCEEEEEc
Confidence 1357899999999888877
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=2.4e-09 Score=90.37 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=127.1
Q ss_pred EEc--CCCCeEEEE-eCCCcEEEEEcCCC----eeEEEec--cc--ccceeeEEEEEeCCCCceEEEeecC------cEE
Q 015371 47 QFS--NDGSFFVAA-SQESNIKVYNVDKN----WKIQKDI--ET--KALRWTITDTSLSPDQRFLVYASIC------AIV 109 (408)
Q Consensus 47 ~~s--~~~~~l~t~-~~dg~i~iw~~~~~----~~~~~~~--~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i 109 (408)
.++ +++++|+.. ..++.|.++|+.+. +....+. .. .........+..+|+| .++++..+ |.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 788887765 56788999998654 2222221 00 1111245677889999 66665555 689
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-------------------cCCeEEEEEC
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-------------------SDNFIYVYDL 170 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~ 170 (408)
.++|..+.+........... ..--..+.|+|+++.+++.. ....|.+||+
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~-----------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGD-----------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp EEECTTTCCEEEECCSBCTT-----------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred EEEECCCCeEEEEEccCCCC-----------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 99999988764433221110 01134578899999888874 3689999999
Q ss_pred CCCcceeeecCc--CCCceEEEE--ecCCCCEEEEec------CCCeEEEEeccccccCCccceee--ec----------
Q 015371 171 QANKCSLRIPAH--KSDVNTVCF--ADETGHLIFSGS------DDSLCKVWDRRCFISKGRANGVL--MG---------- 228 (408)
Q Consensus 171 ~~~~~~~~~~~~--~~~v~~l~~--~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~--~~---------- 228 (408)
.+++.+.++... ......+.| + |+++++++++ .+++|.+|.... ........+ ..
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCcccccccccc
Confidence 998877777542 123455655 7 7888777776 456787766431 011111110 00
Q ss_pred ------ccCCeEEEEecCCCCeEEEeec-CCeEEEEeCCC
Q 015371 229 ------HLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 261 (408)
Q Consensus 229 ------~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 261 (408)
-......|.+++||++|.++.. .+.|.+||+..
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0245678999999998877765 67899999864
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.28 E-value=5.9e-10 Score=93.63 Aligned_cols=261 Identities=13% Similarity=0.098 Sum_probs=156.9
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeee
Q 015371 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (408)
..++.+..++. |..++.++.|..|| .+++...... .....+.++...+++.. .+++.+ +..+|. +++....
T Consensus 22 ~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 22 DSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFK---SGEIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSC---GGGEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGG
T ss_pred ccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEe---cCCCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEE
Confidence 34455656665 56677788899999 7775544322 22235677777777764 444444 777775 3332111
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEe
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 202 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~ 202 (408)
...... ......+. +..+.+++.++.|..+|.. ++...........+.++... +++. ++.+
T Consensus 93 --~~~~~~------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~vg 153 (330)
T 3hxj_A 93 --FDTKKA------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IYVG 153 (330)
T ss_dssp --SCC-----------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EEEE
T ss_pred --EECCCC------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EEEE
Confidence 111111 11122222 4467888888999999988 77666665555566777765 5555 6667
Q ss_pred cCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceee
Q 015371 203 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 282 (408)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
+.++.|..+|. . ++...........+.++...+++.+++.. +.+..+| .+.
T Consensus 154 t~~~~l~~~d~----~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g-------------------- 204 (330)
T 3hxj_A 154 SNDNYLYAINP----D-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG-------------------- 204 (330)
T ss_dssp CTTSEEEEECT----T-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS--------------------
T ss_pred cCCCEEEEECC----C-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC--------------------
Confidence 78899999995 2 44444454445566777777777755544 7789998 442
Q ss_pred cccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeeeE
Q 015371 283 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 362 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (408)
.......... ..+.++..+++| .|..++.++.|..+| .+++.+..+......+..+..
T Consensus 205 --------------~~~~~~~~~~------~~~~~~~~~~~g-~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~ 262 (330)
T 3hxj_A 205 --------------TEKWNFYAGY------WTVTRPAISEDG-TIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVI 262 (330)
T ss_dssp --------------CEEEEECCSS------CCCSCCEECTTS-CEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEE
T ss_pred --------------cEEEEEccCC------cceeceEECCCC-eEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceE
Confidence 1111111111 112333445555 466677788899898 467776666655555566677
Q ss_pred eCCCCeEEeecCCCcEEEEee
Q 015371 363 HPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 363 ~~~~~~l~s~~~dg~v~iw~~ 383 (408)
.+++. |..++.+|.|..+|.
T Consensus 263 ~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 263 GNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp CTTSC-EEEECTTCEEEEECT
T ss_pred cCCCe-EEEecCCCCEEEECC
Confidence 66664 556677888888885
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.27 E-value=5.4e-08 Score=78.85 Aligned_cols=251 Identities=9% Similarity=0.048 Sum_probs=146.9
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeE----EEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEECCCCceeeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTI 127 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~ 127 (408)
.+|..+.. +.|+.++++..... .... ......+..++|++++..|+.+. .++.|..++..+........ .
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~--~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFL--HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--Q 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEE--EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--T
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeee--cCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--C
Confidence 45555553 47888888765321 1111 11123578999999766666554 56899999987654321110 0
Q ss_pred eeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC--
Q 015371 128 HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-- 204 (408)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-- 204 (408)
. ......+++++++..|+.+. ..+.|.++++..................++++|.++.++++...
T Consensus 77 ~------------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 77 D------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp T------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred C------------CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 0 11478899999766666554 46789999986543222222222467899999334554454433
Q ss_pred CCeEEEEeccccccCCccceeee-cccCCeEEEEecCCCCeEE-EeecCCeEEEEeCCCCcCccccccccccccccceee
Q 015371 205 DSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFI-SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 282 (408)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
.+.|..+++. +.....+. ........++++++++.|. +-...+.|..+|+....
T Consensus 145 ~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~------------------- 200 (267)
T 1npe_A 145 NPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG------------------- 200 (267)
T ss_dssp SCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-------------------
T ss_pred CcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-------------------
Confidence 4688888864 22222221 2234578899999876554 44456789999986511
Q ss_pred cccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCC-CCeeeee
Q 015371 283 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCC 361 (408)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~ 361 (408)
.......... . ..++.. ++.++++...++.|.++|..+++.+..+.... .....++
T Consensus 201 ---------------~~~~~~~~~~---P----~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~ 257 (267)
T 1npe_A 201 ---------------RRKVLEGLQY---P----FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257 (267)
T ss_dssp ---------------EEEEEECCCS---E----EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEE
T ss_pred ---------------eEEEecCCCC---c----eEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceee
Confidence 0011111110 0 111222 24444444456899999999999988886443 2477888
Q ss_pred EeCCCC
Q 015371 362 WHPIYP 367 (408)
Q Consensus 362 ~~~~~~ 367 (408)
+.|++.
T Consensus 258 ~~~~~~ 263 (267)
T 1npe_A 258 IALSQC 263 (267)
T ss_dssp EECSCC
T ss_pred ecCccC
Confidence 888764
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.24 E-value=4.4e-07 Score=85.65 Aligned_cols=325 Identities=8% Similarity=0.052 Sum_probs=182.6
Q ss_pred eeeEecCCccEEEeecCceEEEEEEecCcee-e--ecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccc
Q 015371 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWK-V--DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (408)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-l--~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 81 (408)
.++...++|.+.+......+..+-+...... + ..+...|.++...+++.+.+ |+.++-+.+|+..++.........
T Consensus 176 ~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 176 ASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp EEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCT
T ss_pred EEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCC
Confidence 3555566676555433223333332222111 1 12346789998888887555 444434899998776433221110
Q ss_pred ----ccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 82 ----KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 82 ----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
.-....|.++...++|.+.+ |+.+ -+.+|+..+............ ........|.++...++|. |.
T Consensus 255 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~-------~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 255 SNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVE-------NGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp TCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTS-------TTSCSSSCEEEEEECTTSC-EE
T ss_pred CCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCC-------CCCCCCCcEEEEEEeCCcC-EE
Confidence 11234699999998887655 4445 478899876654322111000 0011123699999998886 66
Q ss_pred EEecCCeEEEEECCCCcceeeec------CcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee----
Q 015371 158 AAGSDNFIYVYDLQANKCSLRIP------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---- 227 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---- 227 (408)
+|+.++-|..++..++....... -....|.++... .+++ |..|+.++-|..||.. .........
T Consensus 325 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQEDE 398 (795)
T ss_dssp EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC---
T ss_pred EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCCCC
Confidence 67777778999876554221111 123468888877 5555 5567777778999853 222211111
Q ss_pred ----cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeee
Q 015371 228 ----GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 303 (408)
Q Consensus 228 ----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
-....|.++...++++.|..|+.++-|..||..+... ..+.
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-----------------------------------~~~~ 443 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-----------------------------------ENFN 443 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-----------------------------------EEEC
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-----------------------------------EEee
Confidence 1235788999888888566777777799999876321 1111
Q ss_pred cccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEc------cCCCCeeeeeEeCCCCeEEeecCCCc
Q 015371 304 GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD------FHNAPVRDCCWHPIYPMLISSSWDCN 377 (408)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~ 377 (408)
..... .....++++...++|.+.+ |+.+ .+.+||..+++...... .....|.++...+++.+.+.+. +-
T Consensus 444 ~~~~~-l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~G 518 (795)
T 4a2l_A 444 QRNSQ-LVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EG 518 (795)
T ss_dssp TTTSC-CSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SC
T ss_pred cCCCC-cCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--Cc
Confidence 00000 0001122333445566444 4444 48899987765432211 1235789999999988666554 45
Q ss_pred EEEEeeCCC
Q 015371 378 IVRWEIPGI 386 (408)
Q Consensus 378 v~iw~~~~~ 386 (408)
|..|+..+.
T Consensus 519 l~~~~~~~~ 527 (795)
T 4a2l_A 519 LSVFKQEGL 527 (795)
T ss_dssp EEEEEEETT
T ss_pred eEEEeCCCC
Confidence 888887653
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.21 E-value=5.1e-07 Score=85.24 Aligned_cols=285 Identities=7% Similarity=0.066 Sum_probs=167.9
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc----cccceeeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
...|.++...++|.+.+ |+.+ -|.+|+..++........ ..-....|.++...++|... .|+.++-|..++..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCC
Confidence 35699999999887554 5555 489999876643222111 11123469999999988754 46666668888765
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC--------cCCCce
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--------HKSDVN 187 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~ 187 (408)
+............. ......|.++...++|. |.+|+.++-|..|+..+++....... ....|.
T Consensus 339 ~~~~~~~~~~~~~~--------~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 339 RNRFKNIRNIPYKN--------SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp GGSSEEECCCTTSS--------SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred cccceEEcCCCCCC--------CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 54332211110000 01123589999888886 66677777799999877654332211 235688
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-----cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
++... +++++|..|+.++-|..+|.+ .++ ...+. .....|.++...++|.+.+. +.+ -+.+||..+.
T Consensus 410 ~i~~d-~~g~~lWigt~~~Gl~~~d~~----~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 410 AVYVD-EKKSLVYIGTHAGGLSILHRN----SGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQR 481 (795)
T ss_dssp EEEEE-TTTTEEEEEETTTEEEEEETT----TCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTT
T ss_pred EEEEc-CCCCEEEEEeCcCceeEEeCC----CCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCC
Confidence 99887 677756777777789999854 222 22221 13457899998888875554 444 4888987652
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeeccc-ceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEEC
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 341 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~ 341 (408)
.. ..+.... ........+.++...++|.+.+ |+. +.|..||.
T Consensus 482 ~~-----------------------------------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~ 524 (795)
T 4a2l_A 482 SF-----------------------------------TTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQ 524 (795)
T ss_dssp EE-----------------------------------EECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEE
T ss_pred eE-----------------------------------EEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeC
Confidence 11 1110000 0000001122233455666544 444 45888998
Q ss_pred CCCceeEEEc-------cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCC
Q 015371 342 VSGAQVAKLD-------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 385 (408)
Q Consensus 342 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 385 (408)
.+++. .+. .+...|.++...++|.+.+++. . -|..||..+
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~ 571 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD 571 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence 77655 332 1345788999999988665543 3 577777654
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=7.2e-09 Score=95.09 Aligned_cols=310 Identities=9% Similarity=0.074 Sum_probs=169.4
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEeccccccee-------eE-EEEEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW-------TI-TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~v-~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
+..+++++.++.|.-+|..+++.+.+......... .+ ..+++ .+..+++++.++.+..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45677777888999999999887766533211100 00 11122 3567888888999999999998875443
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec------CCeEEEEECCCCcceeeecCcC--------------
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHK-------------- 183 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-------------- 183 (408)
....... .......++ + .++ .++++.. +|.|+.+|.++|+.+..+....
T Consensus 144 ~~~~~~~-----~~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 212 (668)
T 1kv9_A 144 QTTDPAK-----PYSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELRE 212 (668)
T ss_dssp ECSCTTS-----SCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred ccCCCCC-----cceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccc
Confidence 3211000 000000111 1 134 4555543 5899999999999887764210
Q ss_pred -----------------CCceEEEEecCCCCEEEEecCCCe-------------------EEEEeccccccCCccceeee
Q 015371 184 -----------------SDVNTVCFADETGHLIFSGSDDSL-------------------CKVWDRRCFISKGRANGVLM 227 (408)
Q Consensus 184 -----------------~~v~~l~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~ 227 (408)
.....+++. +...+++.++.++. |..+|.+ +++.+-.+.
T Consensus 213 ~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~~~ 287 (668)
T 1kv9_A 213 AAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWHYQ 287 (668)
T ss_dssp HHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEEEE
T ss_pred ccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeEee
Confidence 011246777 66778888877763 8888864 566655544
Q ss_pred c--cc-------CCeEEEEecCCCC---eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccC-
Q 015371 228 G--HL-------EGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP- 294 (408)
Q Consensus 228 ~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (408)
. |. .+.....+..+|+ .++.++.+|.++++|..+++......... ..|...... .....+...
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~--~~g~p~~~~~ 363 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDL--ATGRPVEAPG 363 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECT--TTCCEEECTT
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--ccccccccc--ccCCcccccc
Confidence 3 21 2233333334665 68899999999999998876542211111 011100000 000000000
Q ss_pred ---CCcceeeeecccceeeEEEEEeeccccCCCcEEE------------------------------------EeeCCCe
Q 015371 295 ---HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY------------------------------------TGSSDNS 335 (408)
Q Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~------------------------------------~~~~dg~ 335 (408)
..+....+.+..... .-..++++|+..+++ ....+|.
T Consensus 364 ~~~~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~ 439 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA 439 (668)
T ss_dssp TTCSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE
T ss_pred ccccCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce
Confidence 000000000000000 000012222222222 2224588
Q ss_pred EEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 336 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
|..||+.+++.+-+...+ .+.....+...+.+++.++.||.|+.||..+++.
T Consensus 440 l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 440 LLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 999999999988777643 3344445556678888999999999999988765
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.16 E-value=2.1e-08 Score=79.55 Aligned_cols=200 Identities=8% Similarity=-0.006 Sum_probs=129.7
Q ss_pred eEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcC-CCceEEEEecCCCCEEEEecCCCeEEEEeccccccCC
Q 015371 144 IFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 220 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (408)
...+.|++++.+.++.+. ++.|.++|+.+++.+..+.... .....+++. ++.+.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence 578999998744444333 5799999999999888765322 223456665 34555666678999999964 55
Q ss_pred ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCccee
Q 015371 221 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 300 (408)
Q Consensus 221 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
+.+..+..... ....+++||+.++++..++.|.++|..+.+ .+.
T Consensus 97 ~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~----------------------------------v~~ 140 (266)
T 2iwa_A 97 SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK----------------------------------LIK 140 (266)
T ss_dssp EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC----------------------------------EEE
T ss_pred cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc----------------------------------EEE
Confidence 66666643211 123355678877777678899999988732 222
Q ss_pred eeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-------------CCCeeeeeEeCCCC
Q 015371 301 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIYP 367 (408)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~ 367 (408)
.+.-..... .......+.+. +|...+....++.|.+.|..+++.+..+... ....+.++|+|+++
T Consensus 141 ~I~Vg~~~~-p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 141 KHNVKYNGH-RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp EEECEETTE-ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EEEECCCCc-ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 222111000 00011122333 4665555556789999999999998888632 13468999999987
Q ss_pred -eEEeecCCCcEEEEeeCCCC
Q 015371 368 -MLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 368 -~l~s~~~dg~v~iw~~~~~~ 387 (408)
+++++...+.|.+-++....
T Consensus 219 ~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 219 RIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCCeEEEEEEeccc
Confidence 66677788999999997754
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.15 E-value=7.1e-08 Score=80.51 Aligned_cols=208 Identities=13% Similarity=0.083 Sum_probs=123.2
Q ss_pred eecccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc-----------------cceeeEEEEEeCC-CC
Q 015371 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK-----------------ALRWTITDTSLSP-DQ 97 (408)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~ 97 (408)
+.+.-....+++++++|++++++..++.|..|+..++... ...... .....+..+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 3343345677899999998888888899999988765322 111000 1112578899998 55
Q ss_pred ceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEec---------------
Q 015371 98 RFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGS--------------- 161 (408)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~--------------- 161 (408)
+ |+++...+.+..+|..++............ .......+++.+ +|+..++-..
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~----------~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHATQLATSVDGV----------PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEECEEEESEETTE----------ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred c-EEEEECCCCEEEEeCCCCEEEEecccCCCC----------cccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 5 555544555788887654332221110000 011367899999 8875554322
Q ss_pred --CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE-EecCCCeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 162 --DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 162 --dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
++.|..+|..+++...... .......++++ ++++.|+ +-+.++.|..|++.... .+. ...+....+ ...+++
T Consensus 162 ~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~-~~~-~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPK-KGT-AEVLVKIPN-PGNIKR 236 (322)
T ss_dssp CCCEEEEEEETTTTEEEEEEE-EESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTT-TTC-EEEEEECSS-EEEEEE
T ss_pred CCCceEEEEeCCCCEEEEecc-CCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCc-CCc-cceEEeCCC-CCCeEE
Confidence 3679999987765433222 22445789999 7777554 44667899999975211 011 111111223 678899
Q ss_pred cCCCCeEEEeec----------CCeEEEEeCC
Q 015371 239 RRDGRYFISNGK----------DQTTKLWDIR 260 (408)
Q Consensus 239 ~~~~~~l~~~~~----------d~~i~iwd~~ 260 (408)
.++|++.++... .+.|..+|..
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 999987666544 3556666643
No 244
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.14 E-value=8.5e-08 Score=86.13 Aligned_cols=198 Identities=10% Similarity=0.068 Sum_probs=115.7
Q ss_pred CCeEEEEeC-CCcEEEEEc-CCCeeEEEecccccce--------eeEEEEEeCCCCce----EEEeecCcEEEEEECCCC
Q 015371 52 GSFFVAASQ-ESNIKVYNV-DKNWKIQKDIETKALR--------WTITDTSLSPDQRF----LVYASICAIVNIVDVGSS 117 (408)
Q Consensus 52 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~----l~~~~~dg~i~~w~~~~~ 117 (408)
+..+++++. ++.|.-+|. .+++.+.+........ .....++++|.+.. +++++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666776 788999999 8887776553322110 00122445444444 888888999999999998
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe------cCCeEEEEECCCCcceeeecCcCCC------
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLRIPAHKSD------ 185 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~------ 185 (408)
+............ .......++ + .++ .+++++ .+|.|+.+|.++++.+.++......
T Consensus 142 ~~~W~~~~~~~~~-----~~~~~ssP~----v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~ 210 (599)
T 1w6s_A 142 ETVWKVENSDIKV-----GSTLTIAPY----V-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA 210 (599)
T ss_dssp CEEEEEECCCGGG-----TCBCCSCCE----E-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred CEEEeecCCCCCc-----cceeecCCE----E-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence 8754433221100 000000011 1 144 455555 3799999999999988766432111
Q ss_pred -------------------------------c-eEEEEecCCCCEEEEecCCC----------------eEEEEeccccc
Q 015371 186 -------------------------------V-NTVCFADETGHLIFSGSDDS----------------LCKVWDRRCFI 217 (408)
Q Consensus 186 -------------------------------v-~~l~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~~ 217 (408)
+ ..+++. +...+++.+..++ .|.-+|.+
T Consensus 211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~--- 286 (599)
T 1w6s_A 211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD--- 286 (599)
T ss_dssp TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT---
T ss_pred cccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC---
Confidence 0 134555 5566777776553 78888864
Q ss_pred cCCccceeeeccc----------CCeEEEEec-CCC---CeEEEeecCCeEEEEeCCCCcCcc
Q 015371 218 SKGRANGVLMGHL----------EGITFIDSR-RDG---RYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 218 ~~~~~~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
+++.+-.++... .++. +... .+| ..++.++.+|.++++|.++++...
T Consensus 287 -TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 287 -TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp -TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred -CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 555554443321 1121 2222 467 467778899999999998866543
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.14 E-value=5e-08 Score=87.71 Aligned_cols=307 Identities=11% Similarity=0.031 Sum_probs=162.3
Q ss_pred CCeEEEEeC-CCcEEEEEc-CCCeeEEEecccccce-ee-------EEEEEeCCCCceEEEeecCcEEEEEECCCCceee
Q 015371 52 GSFFVAASQ-ESNIKVYNV-DKNWKIQKDIETKALR-WT-------ITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (408)
Q Consensus 52 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~-~~-------v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (408)
+..++.++. ++.|.-+|. .+++.+.+........ .. -..++. .+..+++++.++.+..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 788999999 8887776543322110 00 001122 35678888889999999999988754
Q ss_pred eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec------CCeEEEEECCCCcceeeecCcCCC----------
Q 015371 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD---------- 185 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~---------- 185 (408)
......+.. .......++ .. ++ .+++++. ++.|+.+|.++++.+.++......
T Consensus 140 ~~~~~~~~~-----~~~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~ 208 (571)
T 2ad6_A 140 EVEVCDPKV-----GSTLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EEECCCGGG-----TCBCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EecCCCCCc-----cceeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence 433221100 000000111 11 34 5666654 789999999999988766432110
Q ss_pred ----------------------------ceEEEEecCCCCEEEEecCC----------------CeEEEEeccccccCCc
Q 015371 186 ----------------------------VNTVCFADETGHLIFSGSDD----------------SLCKVWDRRCFISKGR 221 (408)
Q Consensus 186 ----------------------------v~~l~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~ 221 (408)
...+++. +....++.++.+ +.|..+|.+ +++
T Consensus 209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----tG~ 283 (571)
T 2ad6_A 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----TGM 283 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----TCC
T ss_pred cccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----CCc
Confidence 0235666 445566655532 358888864 555
Q ss_pred cceeeec--c--------cCCeEEEEecCCCC---eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccc
Q 015371 222 ANGVLMG--H--------LEGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 288 (408)
Q Consensus 222 ~~~~~~~--~--------~~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (408)
.+-.+.. | ..++ -+....+|+ .++.++.+|.+.++|..+++......... ...|... +.
T Consensus 284 ~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~-~~~w~~~-~d----- 355 (571)
T 2ad6_A 284 AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP-AVNVFKK-VD----- 355 (571)
T ss_dssp EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST-TCCSEEE-EC-----
T ss_pred EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC-Ccccccc-cc-----
Confidence 5544432 1 1122 122234674 57778889999999998865433221100 0000000 00
Q ss_pred eeeccCCCcceeeeec--c-cceeeEEEE-------EeeccccCCCcEEEEee---------------------------
Q 015371 289 RRLKHPHDQSLATYKG--H-SVLRTLIRC-------YFSPEYSTAQKYIYTGS--------------------------- 331 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~--~-~~~~~~~~~-------~~~~~~s~~~~~l~~~~--------------------------- 331 (408)
...+.++..... . ......... -..++++|+..++++..
T Consensus 356 ----~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 356 ----LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp ----TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ----ccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 000000000000 0 000000000 01123444444444332
Q ss_pred ----------CCCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCCC
Q 015371 332 ----------SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 389 (408)
Q Consensus 332 ----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 389 (408)
.+|.|..||..+++.+-++... ..+........+..++.++.||.|+.||..+++..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 3578999999999988777532 33444444444567777899999999999887653
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=6.3e-08 Score=88.89 Aligned_cols=165 Identities=10% Similarity=0.085 Sum_probs=97.0
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeec------CcEEEEEECCCCceeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARESLA 123 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~~w~~~~~~~~~~~ 123 (408)
+..++.++.|+.|..+|..+++.+.......... ...+.-+| .+..++++.. +|.|..+|..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~--~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK--PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS--SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC--cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888889999999999998776654321100 00011112 1334555543 589999999998875443
Q ss_pred eeeeee-eeee-------e-cCCC--------CCccceEEEEEcCCCCEEEEEecCC-------------------eEEE
Q 015371 124 NVTIHK-GLDF-------S-ADGD--------EDEFGIFSVKFSTDGQELVAAGSDN-------------------FIYV 167 (408)
Q Consensus 124 ~~~~~~-~~~~-------~-~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg-------------------~i~i 167 (408)
...... ...+ . .... ........+++.++...++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 321100 0000 0 0000 0001123468888888888887665 4999
Q ss_pred EECCCCcceeeecC--cC-------CCceEEEEecCCCC---EEEEecCCCeEEEEeccccccCCccc
Q 015371 168 YDLQANKCSLRIPA--HK-------SDVNTVCFADETGH---LIFSGSDDSLCKVWDRRCFISKGRAN 223 (408)
Q Consensus 168 ~d~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 223 (408)
+|..+++.+..++. |. .+.....+. .+++ .++.++.+|.+.++|.+ +++.+
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l 337 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLI 337 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEE
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEe
Confidence 99999998887753 22 222222222 3454 68899999999999964 45544
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.11 E-value=9.9e-08 Score=83.67 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=128.5
Q ss_pred EEEEcC-----CCCeEEEEeC-CCcEEEEEcCCCeeEEEecccccceeeEEEEEe-C-CCCceEEEee------------
Q 015371 45 TSQFSN-----DGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSL-S-PDQRFLVYAS------------ 104 (408)
Q Consensus 45 ~~~~s~-----~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------ 104 (408)
..+.|. ||++|..... +..|.+.|+.+.+....+....+. .+..+++ + |+++++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 355665 8888887755 567999999998765533222111 4777887 5 9999998884
Q ss_pred ------cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC---------------
Q 015371 105 ------ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--------------- 163 (408)
Q Consensus 105 ------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------- 163 (408)
.++.+.+.|.++.+......... . ...++++|+|+++++.+.+.
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~-------------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG--N-------------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS--C-------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC--C-------------ccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 34579999998776533322211 1 34467888888888777442
Q ss_pred -----------------------eEEEEECCC--Ccc-eeeecCcCCCceEEEEecCCCCEEEEe-cCCCeEEEEecccc
Q 015371 164 -----------------------FIYVYDLQA--NKC-SLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCF 216 (408)
Q Consensus 164 -----------------------~i~i~d~~~--~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg~i~iwd~~~~ 216 (408)
.|.+.|..+ ++. +..+.. .....++.++ ||+++++++ ..+.+|.++|+...
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECccc
Confidence 367777776 433 334432 3456789999 788766554 46889999998632
Q ss_pred cc-------CCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 217 IS-------KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 217 ~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.. ....+.....-......++|+|+|...++...|++|..||+..
T Consensus 310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 10 0011111112335678899999995555666799999999875
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.08 E-value=8.5e-08 Score=80.03 Aligned_cols=250 Identities=7% Similarity=-0.034 Sum_probs=144.3
Q ss_pred EEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCC------CCccceEEEEEcC-CCCEEEEEe
Q 015371 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGD------EDEFGIFSVKFST-DGQELVAAG 160 (408)
Q Consensus 88 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~-~~~~l~~~~ 160 (408)
..+++|.++++.+.++..++.|..|+..++.............. ....+. .....+..+++.+ ++ .|+++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNK-AFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCH-HHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccc-cccccccchhccccCCCCceEEEcCCCC-cEEEEE
Confidence 55688999998788888889999998876544321110000000 000000 0011377899997 55 466665
Q ss_pred cCCeEEEEECCCCcceeee---cC-cCCCceEEEEecC-CCCEEEEecC-----------------CCeEEEEecccccc
Q 015371 161 SDNFIYVYDLQANKCSLRI---PA-HKSDVNTVCFADE-TGHLIFSGSD-----------------DSLCKVWDRRCFIS 218 (408)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~---~~-~~~~v~~l~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~~ 218 (408)
..+.|..+|..+++..... .+ .......+++. + ++++.++-.. ++.|..+|..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~---- 173 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS---- 173 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT----
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC----
Confidence 5566888987765432211 11 12346789998 6 7777666432 3678888842
Q ss_pred CCccceeeecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCc
Q 015371 219 KGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 297 (408)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
.+.. ..+.........++++|+++.|..+ ...+.|..|++..... .
T Consensus 174 ~~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--------------------------------~ 220 (322)
T 2fp8_A 174 TKET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--------------------------------G 220 (322)
T ss_dssp TTEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--------------------------------T
T ss_pred CCEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--------------------------------C
Confidence 2222 2222223445679999999866554 5568899999875210 0
Q ss_pred ceeeeecccceeeEEEEEeeccccCCCcEEEEeeC----------CCeEEEEECCCCceeEEEccCC----CCeeeeeEe
Q 015371 298 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----------DNSVYIYDLVSGAQVAKLDFHN----APVRDCCWH 363 (408)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~ 363 (408)
....+..... ...++++++|++.++... .+.|..+|. .++.+..+.... ..++.+++
T Consensus 221 ~~~~~~~~~g-------P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 221 TAEVLVKIPN-------PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp CEEEEEECSS-------EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-
T ss_pred ccceEEeCCC-------CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-
Confidence 0011110000 122356777886666544 467888986 577777775432 34666776
Q ss_pred CCCCeEEeecCCCcEEEEeeCCC
Q 015371 364 PIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 364 ~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.+++++++....+.|..+++...
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC---
T ss_pred eCCEEEEeecCCCceEEEecccc
Confidence 46667777667889999998643
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=2.1e-07 Score=73.87 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=130.5
Q ss_pred ceeEEEEcCCCCeEEEEeC--CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCc
Q 015371 42 RVYTSQFSNDGSFFVAASQ--ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSA 118 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~ 118 (408)
....++|++|+.+.++.+. ++.|++.|+.+++.+......... ....+++. ++.|. +.-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~--fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY--FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC--CEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc--ceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 3578999998765555543 578999999999766654322211 12234554 44454 44567899999998876
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcC-----CCceEEEEec
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFAD 193 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~ 193 (408)
........ .. ....+++|++.++++..++.|.++|.++.+.+..+.... ..++.+.|.
T Consensus 98 v~~~i~~g--~~--------------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 98 NIKNFTHQ--MK--------------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EEEEEECC--SS--------------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEEECC--CC--------------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 64332221 00 012355688888888788999999999988877775322 246788887
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecc-------------cCCeEEEEecCCCCe-EEEeecCCeEEEEeC
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRY-FISNGKDQTTKLWDI 259 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~ 259 (408)
++.+.+....++.|.+.|.. +++.+..+.-. ....+.++++|+++. ++++...+.+...++
T Consensus 161 -dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 46666666668899999965 66666665431 135689999999875 555666788988888
Q ss_pred CC
Q 015371 260 RK 261 (408)
Q Consensus 260 ~~ 261 (408)
..
T Consensus 236 ~~ 237 (266)
T 2iwa_A 236 HL 237 (266)
T ss_dssp EE
T ss_pred ec
Confidence 76
No 250
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.08 E-value=1e-06 Score=69.55 Aligned_cols=209 Identities=10% Similarity=0.138 Sum_probs=133.4
Q ss_pred eeecccCceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
.+.|-.+.+..++|+|++..|+ +...++.|...|.. +..+... ...+. .....+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3456667899999999876555 56778888888887 5444433 22221 2477788889888777665678899998
Q ss_pred CCCCce-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC---CCcceeee-------cCc
Q 015371 114 VGSSAR-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---ANKCSLRI-------PAH 182 (408)
Q Consensus 114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~-------~~~ 182 (408)
+..... ....... +.............++|+|+++.|+++.......+|.+. ....+..+ ..+
T Consensus 98 v~~~~~i~~~~~~~------~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 98 LTPNSEVKILKKIK------IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp ECTTCCEEEEEEEE------CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred cCCCCeeeeeeeec------cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 876542 1111111 100011223458899999999888888776555555543 11111111 113
Q ss_pred CCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc---------cCCeEEEEecCCCCeEEEeecCCe
Q 015371 183 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---------LEGITFIDSRRDGRYFISNGKDQT 253 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~d~~ 253 (408)
...+.++++.|..+.+++....+..+..+|.. ++.+..+.-. -..-..|++.++|++.++ ++.+.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~ 245 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR 245 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce
Confidence 34678999998888899999999999999963 4443333221 135689999999985555 66666
Q ss_pred EEEEe
Q 015371 254 TKLWD 258 (408)
Q Consensus 254 i~iwd 258 (408)
++.+.
T Consensus 246 ~y~f~ 250 (255)
T 3qqz_A 246 FYRFT 250 (255)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.08 E-value=1.7e-08 Score=92.82 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=74.3
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec-CcEEEE
Q 015371 45 TSQFSN-DGSFFVAASQES-----------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNI 111 (408)
Q Consensus 45 ~~~~s~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~ 111 (408)
++++.+ ++++++.|+.+. .+.+||..++.-.........+.....++++.++++.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 888888887543 5889998876322111111111112334677889999999884 458999
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cC-----CeEEEEECCCCcc
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SD-----NFIYVYDLQANKC 175 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~ 175 (408)
||..+.+-.......... .-.+++..++++.++.|+ .+ ..+.+||..+++.
T Consensus 270 yd~~t~~W~~~~~~~~~R-------------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCcCCceeECCCCCccc-------------cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 999876543332211111 123455667899888888 33 5699999987653
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=1.3e-06 Score=70.55 Aligned_cols=197 Identities=10% Similarity=0.014 Sum_probs=120.1
Q ss_pred CceeEEEEcCCCCeEEEE-eCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~ 118 (408)
..+..++|++++..|..+ ..++.|..++.+..... ..... .......++++|++..|+.+ ...+.|.+++.+...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQ--DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECT--TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEEC--CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 457899999976655554 45688999998765322 22211 11257889999976655554 456789999987543
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCCcceeee-cCcCCCceEEEEecC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADE 194 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~ 194 (408)
...... .. ......++++|++..|+.+.. .+.|..+++.... ...+ .........+++++.
T Consensus 113 ~~~~~~--~~------------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~ 177 (267)
T 1npe_A 113 RRVLFD--TG------------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAF 177 (267)
T ss_dssp CEEEEC--SS------------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETT
T ss_pred EEEEEE--CC------------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCC
Confidence 221111 00 014678999997666666654 3688888876433 2222 222346789999933
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.+.++++-...+.|.++|+.. ........ .......++.. ++.++++....+.|..+|..+
T Consensus 178 ~~~lyv~d~~~~~I~~~~~~g----~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 178 SSQLCWVDAGTHRAECLNPAQ----PGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTE----EEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEECCCCEEEEEecCC----CceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 455556666778999999741 12122222 22334566654 344444444568899999876
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=3.2e-06 Score=79.64 Aligned_cols=292 Identities=9% Similarity=0.049 Sum_probs=162.6
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec-----------ccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI-----------ETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
...|.++...++|.+ ..|+..+-|.+++..+........ ...-....|.++...++|.+ -.|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCe
Confidence 356999999888864 556664558899987653221111 01112346999999888874 45665666
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee---cCcCCC
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI---PAHKSD 185 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~ 185 (408)
|..++..+............ ..........|.++...++|. |.+|+.++-|..+|..++...... ......
T Consensus 335 l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 408 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQ-----MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNS 408 (781)
T ss_dssp EEEECSSCCSCEEEC----C-----CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSB
T ss_pred EEEeCCCCCcceeeccCccc-----cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcc
Confidence 88888765543222110000 000001123589998888776 666776667899998755432211 112356
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee---cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
|.++... +++. |..|+.++-+..+|.+ .++ ...+. .....|.++...+++.+. .++. +-|..+|..+.
T Consensus 409 v~~i~~d-~~g~-lWigt~~~Gl~~~~~~----~~~-~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 409 VLCSLKD-SEGN-LWFGTYLGNISYYNTR----LKK-FQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASK 479 (781)
T ss_dssp EEEEEEC-TTSC-EEEEETTEEEEEECSS----SCE-EEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSS
T ss_pred eEEEEEC-CCCC-EEEEeccCCEEEEcCC----CCc-EEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCC
Confidence 8888876 5555 4456666778888853 222 22221 134678889888877744 4444 55888987653
Q ss_pred cCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC
Q 015371 263 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~ 342 (408)
..... ......... ...+.++...++|.+ ..|+.++-+..||..
T Consensus 480 ~~~~~--------------------------------~~~~~~~~~---~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 480 KVIHH--------------------------------YDTSNSQLL---ENFVRSIAQDSEGRF-WIGTFGGGVGIYTPD 523 (781)
T ss_dssp SCCEE--------------------------------ECTTTSSCS---CSCEEEEEECTTCCE-EEEESSSCEEEECTT
T ss_pred eEEec--------------------------------ccCcccccc---cceeEEEEEcCCCCE-EEEEcCCCEEEEeCC
Confidence 21100 000000000 011222334455664 445554448889876
Q ss_pred CCceeEEEcc----CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 343 SGAQVAKLDF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 343 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
+++. ..+.. ....|.++...++|.+.+++. +|.|..||..+.
T Consensus 524 ~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 524 MQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp CCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred CCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 6543 33321 235688999888888666554 666588877654
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=7.8e-06 Score=77.02 Aligned_cols=282 Identities=9% Similarity=-0.017 Sum_probs=160.6
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEec------ccccceeeEEEEEeCCCCceEEEeecCcEEEEEE
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI------ETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 113 (408)
...|.++...++|. |..|+.++-|..++........... ...-....|.++...+++.+. .|+.++-+..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 46799999999887 5566666678999876542221111 011122369999998887754 556556688888
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec--CcCCCceEEEE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCF 191 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~ 191 (408)
..+....... ... ......|.++...+++. |.+|+.++-|..+|..+++...... .....|.++..
T Consensus 390 ~~~~~~~~~~---~~~--------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 457 (781)
T 3v9f_A 390 NGKRVAIYNK---ENR--------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE 457 (781)
T ss_dssp TTEEEEECC----------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE
T ss_pred CCCCeEEEcc---CCC--------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE
Confidence 7654332211 000 11123688998887776 5557766779999987765432221 13467888887
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc-----cCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 266 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 266 (408)
. +++. |..|+. +-|..+|.. ........... ...|.++...++|.+.+ ++.++-+..||..+..
T Consensus 458 d-~~g~-lwigt~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~--- 526 (781)
T 3v9f_A 458 D-KNKK-IWIGTH-AGVFVIDLA----SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL--- 526 (781)
T ss_dssp C-TTSE-EEEEET-TEEEEEESS----SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE---
T ss_pred C-CCCC-EEEEEC-CceEEEeCC----CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe---
Confidence 6 5555 444555 568888854 22222211111 35788999988887544 4543447778876521
Q ss_pred ccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce
Q 015371 267 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (408)
...+...... ....+.++...++|.+. .|+.+|.|..||..+++.
T Consensus 527 --------------------------------~~~~~~~~~l--~~~~i~~i~~d~~g~lW-i~T~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 527 --------------------------------VRKFNQYEGF--CSNTINQIYRSSKGQMW-LATGEGLVCFPSARNFDY 571 (781)
T ss_dssp --------------------------------EEEECTTTTC--SCSCEEEEEECTTSCEE-EEETTEEEEESCTTTCCC
T ss_pred --------------------------------EEEccCCCCC--CCCeeEEEEECCCCCEE-EEECCCceEEECCCCCcE
Confidence 1111110000 00112223344556644 444566558899876653
Q ss_pred eEEEcc----CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 347 VAKLDF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 347 ~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
..+.. ....|.++...++|.+.+++ .+| |..++..
T Consensus 572 -~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~ 610 (781)
T 3v9f_A 572 -QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITS 610 (781)
T ss_dssp -EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETT
T ss_pred -EEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECC
Confidence 33322 13467888888888866654 444 5556654
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=1.7e-07 Score=73.41 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=120.8
Q ss_pred eeEEEEcCCCCeEEEEeCCC--cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCce
Q 015371 43 VYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSAR 119 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~ 119 (408)
...+.|+ ++.++.+.+.+| .|+++|+++++.+........ .......++++.|... -.++.+.++|..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~----~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR----YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT----CCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc----cceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 4788998 677777777765 899999999977666543221 2222222234455444 4588999999998876
Q ss_pred eeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCc--C---CCceEEEEecC
Q 015371 120 ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH--K---SDVNTVCFADE 194 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~l~~~~~ 194 (408)
........ ....++++++.|+.+..++.|.++|.++.+.+..+... . ..++.+.|.
T Consensus 120 ~~ti~~~~-----------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-- 180 (262)
T 3nol_A 120 VRSFNYDG-----------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-- 180 (262)
T ss_dssp EEEEECSS-----------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEEEECCC-----------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--
Confidence 44333221 11233357787888777889999999999888776542 1 334568886
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCccceeeecc------------cCCeEEEEecCCCCeEEEeecC
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------------LEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~d 251 (408)
++.+.+....+..|.+.|.+ +++.+..+... ....+.|+++|+++.|.+.+..
T Consensus 181 ~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 56666666678899999965 55555554321 2356899999998877777653
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=2.8e-06 Score=76.43 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=93.4
Q ss_pred EEEcCCCCe----EEEEeCCCcEEEEEcCCCeeEEEeccccc-ceeeEEE-EEeCCCCceEEEee------cCcEEEEEE
Q 015371 46 SQFSNDGSF----FVAASQESNIKVYNVDKNWKIQKDIETKA-LRWTITD-TSLSPDQRFLVYAS------ICAIVNIVD 113 (408)
Q Consensus 46 ~~~s~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~------~dg~i~~w~ 113 (408)
++++|.+.. ++.++.|+.+.-+|..+++.+.+...... ....+.+ ... .++ .+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence 456544444 88888899999999999977765432211 0001110 011 134 455554 378999999
Q ss_pred CCCCceeeeeeeeeeee-eeeec-----------------CCCCC-----ccce-EEEEEcCCCCEEEEEecC-------
Q 015371 114 VGSSARESLANVTIHKG-LDFSA-----------------DGDED-----EFGI-FSVKFSTDGQELVAAGSD------- 162 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~~-----------------~~~~~-----~~~i-~~~~~~~~~~~l~~~~~d------- 162 (408)
..+++............ ..+.+ ..... ...+ ..+++.++...++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 99988754333221110 00000 00000 0001 134566677777777655
Q ss_pred ---------CeEEEEECCCCcceeeecCcCCC------ceE---EEEecCCC---CEEEEecCCCeEEEEecc
Q 015371 163 ---------NFIYVYDLQANKCSLRIPAHKSD------VNT---VCFADETG---HLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 163 ---------g~i~i~d~~~~~~~~~~~~~~~~------v~~---l~~~~~~~---~~l~~~~~dg~i~iwd~~ 214 (408)
+.|..+|.++++.+..++..... ... +.....++ ..++.++.+|.+.++|.+
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 38999999999988776532211 111 12111345 567888999999999965
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.96 E-value=2.9e-07 Score=72.05 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCEEEEEecCC--eEEEEECCCCcceeeecCcCCCce--EEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 144 IFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRIPAHKSDVN--TVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~--~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
...+.|+ ++.+..+.+.+| .|+++|+++++.+..+... .... .++.. ++.+.+..-.++.+.+||.. +
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t 116 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----N 116 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECc----c
Confidence 5678888 666666666665 8999999999988887543 3333 35554 34455555568899999964 6
Q ss_pred CccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce
Q 015371 220 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 299 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
.+.+..+.... ....+.++++.|+.+..++.|.++|..+.+. +
T Consensus 117 ~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v----------------------------------~ 159 (262)
T 3nol_A 117 LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP----------------------------------V 159 (262)
T ss_dssp CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSE----------------------------------E
T ss_pred CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeE----------------------------------E
Confidence 66666665432 2233345677777776678899999887332 2
Q ss_pred eeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC------------CCCeeeeeEeCCCC
Q 015371 300 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH------------NAPVRDCCWHPIYP 367 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~ 367 (408)
..+......... .....+.+. +|+..+....++.|.+.|.++++.+..+... ..-.+.++|+|+++
T Consensus 160 ~~I~V~~~g~~~-~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 160 RTITVTAHGEEL-PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EEEECEETTEEC-CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEEEeccCCccc-cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 222111000000 000001222 4766666667889999999999998888532 12458899999888
Q ss_pred eEEeec
Q 015371 368 MLISSS 373 (408)
Q Consensus 368 ~l~s~~ 373 (408)
.|+.++
T Consensus 238 ~lfVTG 243 (262)
T 3nol_A 238 RLFVTG 243 (262)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 555554
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.94 E-value=1.7e-06 Score=77.95 Aligned_cols=198 Identities=11% Similarity=0.054 Sum_probs=110.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceee------EEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT------ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT 126 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 126 (408)
..+++++.++.|.-+|..+++.+.+.......... -..++. .+..+++++.++.+.-+|..+++........
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 34555555344889999888777665432211000 011112 3566778888999999999999875443322
Q ss_pred eeeeeeeecCCCCCccceEEEEEc-CCCC-EEEEEec------CCeEEEEECCCCcceeeecCcCCC-------------
Q 015371 127 IHKGLDFSADGDEDEFGIFSVKFS-TDGQ-ELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD------------- 185 (408)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~------------- 185 (408)
.... .. .....++ +.=. .+++ .+++++. ++.|+.+|.++++.+.........
T Consensus 147 ~~~~-~~----~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g 219 (582)
T 1flg_A 147 DHGA-GY----TMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG 219 (582)
T ss_dssp CGGG-TC----BCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred CCCc-Cc----ccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence 2110 00 0000111 1101 1233 5666543 789999999999877654321100
Q ss_pred ----------------------------ceEEEEecCCCCEEEEecC--------------------C----CeEEEEec
Q 015371 186 ----------------------------VNTVCFADETGHLIFSGSD--------------------D----SLCKVWDR 213 (408)
Q Consensus 186 ----------------------------v~~l~~~~~~~~~l~~~~~--------------------d----g~i~iwd~ 213 (408)
-..+++. +...+++.+.. | +.|.-+|.
T Consensus 220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d-~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD-AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE-TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred ccccccCCCccccccccccccccCCccccCCceEc-CCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 0234566 45556665552 2 57888886
Q ss_pred cccccCCccceeeec--cc--------CCeEEEEec-CCCC---eEEEeecCCeEEEEeCCCCcCc
Q 015371 214 RCFISKGRANGVLMG--HL--------EGITFIDSR-RDGR---YFISNGKDQTTKLWDIRKMSSN 265 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~~ 265 (408)
+ +++.+-.++. |. .++. +... .+|+ .++.++.+|.++++|.++++..
T Consensus 299 ~----TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 299 S----SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp T----TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred C----CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 4 5665555432 21 1221 2221 4674 7888999999999999886654
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.92 E-value=1.1e-05 Score=67.72 Aligned_cols=197 Identities=8% Similarity=0.037 Sum_probs=119.9
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSA 118 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~ 118 (408)
.+..+|.+..++. +|+.+. ...|+..++..... ........ .+..++|++....|+.+ ...+.|..+++....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~-~~~~~~~~---~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-TLLLNNLE---NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCE-EEEECSCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCee-EEeecCCC---ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 3455677766644 444443 34588888765432 22222222 47889999866666655 456889999987664
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 197 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 197 (408)
......... .....+++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|.++.
T Consensus 107 ~~~~~~~~~--------------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 107 VEEVVSTGL--------------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp CEEEECSSC--------------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred ceEEEeCCC--------------CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 322211100 135678888755555544 44678999998755433333333456789999955666
Q ss_pred EEEEecCC-CeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCC
Q 015371 198 LIFSGSDD-SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 261 (408)
Q Consensus 198 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 261 (408)
++++-..+ +.|..+++. +.....+ .........++++|++..|..+ ...+.|..+|+..
T Consensus 173 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 66666555 788888864 2222222 2223456899999866655544 4567788888764
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.92 E-value=4.1e-06 Score=69.16 Aligned_cols=234 Identities=9% Similarity=0.018 Sum_probs=129.9
Q ss_pred ceeeEecCCccEEEee-cCceEEEEEEecCceeeecccCceeEEEEcCCCCeEEEEeCCC--cEEEEEcCCCeeEEEecc
Q 015371 4 GREVNYSGRGRFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIE 80 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~ 80 (408)
...++++++|++..++ ....+.++-+...........+.+..++++++|+++++..... .|..++..+++.. ....
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~ 112 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLT 112 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEe
Confidence 3568899999877665 3344444433333222223345788999999999766654332 3666666665432 2221
Q ss_pred cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
... ......++..+++..+++-..++.|..+|..++....... ... ... ............+ +++++.|+++.
T Consensus 113 ~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~-~~~--~~~-~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 113 LPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE-HPM--LAR-SNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp CTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE-CGG--GSC-SSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred CCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEE-CCc--ccc-ccccCCCCcCCCc--CcCCCEEEEEe
Confidence 111 1123444555555545554458888888876542211100 000 000 0000011124445 77887776664
Q ss_pred -cCCeEEEEECCC-Ccc--eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccce--eeecccCCeE
Q 015371 161 -SDNFIYVYDLQA-NKC--SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGIT 234 (408)
Q Consensus 161 -~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~i~ 234 (408)
..+.|..+++.. ++. ...+. .......+++. ++++++++....+.|.++|. .++... .+.......+
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd-~dG~l~va~~~~~~V~~~~~-----~G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFD-VEGNLYGATHIYNSVVRIAP-----DRSTTIIAQAEQGVIGST 258 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEB-TTCCEEEECBTTCCEEEECT-----TCCEEEEECGGGTCTTEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEEC-CCCCEEEEeCCCCeEEEECC-----CCCEEEEeecccccCCce
Confidence 467999999874 321 11111 12356788998 78888877777889999984 233321 2222235688
Q ss_pred EEEec---CCCCeEEEeecCC
Q 015371 235 FIDSR---RDGRYFISNGKDQ 252 (408)
Q Consensus 235 ~~~~~---~~~~~l~~~~~d~ 252 (408)
+++|. |+++.|+++...+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 7877776665443
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.91 E-value=2.4e-07 Score=72.52 Aligned_cols=180 Identities=11% Similarity=0.046 Sum_probs=120.3
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCcee
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARE 120 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~ 120 (408)
....+.|+ ++.+.++.+.+|.|+++|+++++.+... ..... --..+++. ++.|. ....++.+.++|..+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~--FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI--FAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC--CEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc--ceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 34688887 4667777788899999999999777665 22210 11224443 44444 4456889999999988765
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcC-----CCceEEEEecCC
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFADET 195 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~ 195 (408)
....... .-..++ ++++.|+.+..++.|.++|.++.+.+..+.... ..++.|.|. +
T Consensus 130 ~ti~~~~---------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--d 190 (268)
T 3nok_A 130 RTTRYSG---------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--N 190 (268)
T ss_dssp EEEECSS---------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred EEEeCCC---------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--C
Confidence 4333221 112333 567888888778999999999998887775322 245678886 5
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecc-------------cCCeEEEEecCCCCeEEEeec
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYFISNGK 250 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~ 250 (408)
+.+.+....+..|.+.|.+ +++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 191 G~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6666666678899999965 55555554421 235689999998776666554
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.91 E-value=5.3e-06 Score=68.54 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=115.8
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-c-EEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-A-IVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-~i~~w~~~~~~ 118 (408)
.....++|+++|+++++-..++.|..|+.+... ....... ..+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~~~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEeCC---CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 457789999999977777678899999876542 2222222 258889999999966554332 2 46667766665
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc-eee---------ecCcCCCceE
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLR---------IPAHKSDVNT 188 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~---------~~~~~~~v~~ 188 (408)
.......... .....++..+++..+++-..++.|+++|..+++. +.. ....-.....
T Consensus 107 ~~~~~~~~~~-------------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 107 VETLLTLPDA-------------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp EEEEEECTTC-------------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred EEEEEeCCCc-------------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 4332221110 0123444455554444444588999999875421 110 0011123445
Q ss_pred EEEecCCCC-EEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCC
Q 015371 189 VCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 189 l~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 260 (408)
+ + +++. ++++-...+.|..+|+... ........+. .......+++.++|+++++....+.|.++|..
T Consensus 174 i--s-~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 174 L--K-RFGNFLYVSNTEKMLLLRIPVDST-DKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp E--E-EETTEEEEEETTTTEEEEEEBCTT-SCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred c--C-cCCCEEEEEeCCCCEEEEEEeCCC-CCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 5 5 4554 5556666789999997520 0001111111 11345678899999887777777889999864
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.89 E-value=4.5e-07 Score=70.98 Aligned_cols=181 Identities=9% Similarity=0.011 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCce--EEEEecCCCCEEEEecCCCeEEEEeccccccCCc
Q 015371 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN--TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 221 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (408)
...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ - ..... .+++. .+.+....-.++.+.+||.. +.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~----Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGM----PPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETT----TTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECC----cCc
Confidence 5677887 4566667777889999999999988877 2 33333 35554 45566666678999999964 666
Q ss_pred cceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceee
Q 015371 222 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 301 (408)
Q Consensus 222 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
.+..+...... ..++ ++++.|+.+..++.|.++|..+.+. +..
T Consensus 128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v----------------------------------~~~ 170 (268)
T 3nok_A 128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFAL----------------------------------VGA 170 (268)
T ss_dssp EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCE----------------------------------EEE
T ss_pred EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeE----------------------------------EEE
Confidence 66666543222 3333 5677777777788999999887332 222
Q ss_pred eecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-------------CCCeeeeeEeCCCCe
Q 015371 302 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIYPM 368 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~ 368 (408)
+.-....... .....+.+. +|++.+....+..|.+.|.++++.+..+... ..-.+.++|+|+++.
T Consensus 171 I~V~~~g~~v-~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 171 VQVKLRGQPV-ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EECEETTEEC-CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEeCCCCccc-ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 2111100000 000011222 5766666656889999999999998887532 135688999998774
Q ss_pred -EEee
Q 015371 369 -LISS 372 (408)
Q Consensus 369 -l~s~ 372 (408)
++||
T Consensus 249 lfVTG 253 (268)
T 3nok_A 249 IFMTG 253 (268)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 4554
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.87 E-value=4.8e-06 Score=74.96 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=90.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccc------eeeEEEEEeC-CCCc-eEEEeec------CcEEEEEECCCC
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKAL------RWTITDTSLS-PDQR-FLVYASI------CAIVNIVDVGSS 117 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~~-~~~~-~l~~~~~------dg~i~~w~~~~~ 117 (408)
+..++.++.|+.|.-+|..+++.+......... ..++ +.=. .+++ .+++++. ++.|.-+|..++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 456778888999999999999777654332210 0111 1100 1233 5556543 789999999988
Q ss_pred ceeeeeeeeee-----eeeeeecC---C----CC---------------CccceEEEEEcCCCCEEEEEec---------
Q 015371 118 ARESLANVTIH-----KGLDFSAD---G----DE---------------DEFGIFSVKFSTDGQELVAAGS--------- 161 (408)
Q Consensus 118 ~~~~~~~~~~~-----~~~~~~~~---~----~~---------------~~~~i~~~~~~~~~~~l~~~~~--------- 161 (408)
+.......... ........ . .. ....-..+++.|+..+++++..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 76543221100 00000000 0 00 0000123567777777776653
Q ss_pred -----------C----CeEEEEECCCCcceeeecC--cCC----CceEEEE-ec--CCC---CEEEEecCCCeEEEEecc
Q 015371 162 -----------D----NFIYVYDLQANKCSLRIPA--HKS----DVNTVCF-AD--ETG---HLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 162 -----------d----g~i~i~d~~~~~~~~~~~~--~~~----~v~~l~~-~~--~~~---~~l~~~~~dg~i~iwd~~ 214 (408)
| +.|..+|..+++.+..++. |.. .+....+ .. .++ ..++.++.+|.++++|.+
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999998887743 321 1112112 11 245 478889999999999964
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.87 E-value=1.4e-06 Score=78.37 Aligned_cols=303 Identities=8% Similarity=-0.037 Sum_probs=149.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC--CCceEEEeec------CcEEEEEECCCCceeeee
Q 015371 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARESLA 123 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~~w~~~~~~~~~~~ 123 (408)
+..++.++.|+.+..+|..+++.+.......... . ..+.-+| .+..+++++. ++.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV-G-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-T-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc-c-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5577888889999999999987776543221100 0 0111122 1334555544 789999999998765433
Q ss_pred eeeeee-eeeeec-----------------CCC------CCccceEEEEEcCCCCEEEEEecC----------------C
Q 015371 124 NVTIHK-GLDFSA-----------------DGD------EDEFGIFSVKFSTDGQELVAAGSD----------------N 163 (408)
Q Consensus 124 ~~~~~~-~~~~~~-----------------~~~------~~~~~i~~~~~~~~~~~l~~~~~d----------------g 163 (408)
...... .....+ ... ........+++.++...++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 322110 000000 000 000001235566766667666532 3
Q ss_pred eEEEEECCCCcceeeecCc--CC----CceEEEEe--cCCC---CEEEEecCCCeEEEEeccccccCCccceeeeccc--
Q 015371 164 FIYVYDLQANKCSLRIPAH--KS----DVNTVCFA--DETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-- 230 (408)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~--~~----~v~~l~~~--~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 230 (408)
.|..+|..+++.+..++.. .. .+....+. +.++ ..++.++.+|.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCCc
Confidence 6999999999988776532 11 11222221 1355 367788999999999964 444433322110
Q ss_pred -----------CCe--------------------------EEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccc
Q 015371 231 -----------EGI--------------------------TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 273 (408)
Q Consensus 231 -----------~~i--------------------------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 273 (408)
.++ ..++++|+..++++...+....++............ .
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~---~ 425 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF---V 425 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC---C
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc---c
Confidence 011 235678888888777665444444332210000000 0
Q ss_pred cccccceee------cccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 274 DYDWDYRWM------EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 274 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
...+..... ........+....++.+-.+..... .+...+...+..++.++.||.|+.+|.++++.+
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-------CCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-------ccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 000000000 0000011111112222222221110 011112223667788999999999999999999
Q ss_pred EEEccCCCC-eeeeeEeCCCCeEE
Q 015371 348 AKLDFHNAP-VRDCCWHPIYPMLI 370 (408)
Q Consensus 348 ~~~~~~~~~-v~~~~~~~~~~~l~ 370 (408)
.+++..... -.-+.+..+++.++
T Consensus 499 w~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 499 WNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEeCCCCcEeeeEEEEECCEEEE
Confidence 888644321 12234556776443
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=3.3e-06 Score=73.13 Aligned_cols=154 Identities=7% Similarity=0.051 Sum_probs=94.9
Q ss_pred ceeEEEEcC-CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-----cEEEEEECC
Q 015371 42 RVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVG 115 (408)
Q Consensus 42 ~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~ 115 (408)
....++++| ++..|..+...+.|+.+|++.+.. ..... .......++|+++++.|+++... ..+...+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 467899998 455566665557899999877643 22222 22258899999999977666542 133334432
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeeec-CcCCCceEEEEec
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFAD 193 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~ 193 (408)
+.......+... .....++++| ++..+++-..++.|..++...+....... ........++|+
T Consensus 214 -g~~~~~~~l~~~-------------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~- 278 (430)
T 3tc9_A 214 -SGFKVITELTKG-------------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH- 278 (430)
T ss_dssp -GTSCSEEEEEEC-------------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC-
T ss_pred -CceeeeeeeccC-------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc-
Confidence 222111111111 1366788999 66655555567899999998765422221 122456889999
Q ss_pred CCCC-EEEEecCCCeEEEEecc
Q 015371 194 ETGH-LIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 194 ~~~~-~l~~~~~dg~i~iwd~~ 214 (408)
++++ ++++-...+.|..++..
T Consensus 279 pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 279 PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEeCC
Confidence 7787 55666677889998864
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.84 E-value=8.2e-07 Score=82.90 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=114.1
Q ss_pred ceeEEEEc-CCCCeEEEEeC-CC----cEEEEEcCCC-eeEEEecccccceeeEEEEEeCCCCceEEEeecC-----cEE
Q 015371 42 RVYTSQFS-NDGSFFVAASQ-ES----NIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIV 109 (408)
Q Consensus 42 ~v~~~~~s-~~~~~l~t~~~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i 109 (408)
.+...+|| |||++||.+.. +| +|+++|+.++ +.+.. ........++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 99999886533 22 4999999887 53211 111124468999999988877664 367
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec---CCeEEEEECCCCc--c--eeeecCc
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANK--C--SLRIPAH 182 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~--~--~~~~~~~ 182 (408)
.++++.++.......+... .......+.|+|||++|+..+. ...|+++|+.++. . .......
T Consensus 250 ~~~~lgt~~~~~~lv~~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEH-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318 (751)
T ss_dssp EEEETTSCGGGCEEEEECC-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred EEEECCCCchhcEEEEecC-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC
Confidence 8888876542211111100 0113567899999999887664 3578999998752 2 2223334
Q ss_pred CCCceEEEEecCCCCEEEEecCC--C--eEEEEeccccccCCcccee-eecccC--CeEEEEecCCCCeEEEeecCCe--
Q 015371 183 KSDVNTVCFADETGHLIFSGSDD--S--LCKVWDRRCFISKGRANGV-LMGHLE--GITFIDSRRDGRYFISNGKDQT-- 253 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~d~~-- 253 (408)
.....++.|+ .++.+++....+ + .|..+|+. ....... +..+.. .+..+.+. .+.++++...++.
T Consensus 319 ~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~ 392 (751)
T 2xe4_A 319 KGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTR 392 (751)
T ss_dssp TTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEE
T ss_pred CCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEE
Confidence 4555666665 455555555444 3 55556643 1112222 333333 34455554 2344555666775
Q ss_pred EEEEeC
Q 015371 254 TKLWDI 259 (408)
Q Consensus 254 i~iwd~ 259 (408)
|.++|+
T Consensus 393 l~~~dl 398 (751)
T 2xe4_A 393 IWTMMA 398 (751)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 455564
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.84 E-value=1.3e-06 Score=81.64 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=104.1
Q ss_pred eeeEec-CCccEEEee-----cCceEEEEEEecCc-eeeecc-cCceeEEEEcCCCCeEEEEeCC-----CcEEEEEcCC
Q 015371 5 REVNYS-GRGRFSAAD-----SCHVLSRYLPVNGP-WKVDGM-NSRVYTSQFSNDGSFFVAASQE-----SNIKVYNVDK 71 (408)
Q Consensus 5 ~~~~~s-~dg~~~~~~-----~~~~~~~~~~~~~~-~~l~~h-~~~v~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~ 71 (408)
...+|| |||++++-. ........++.... ..+..+ ......++|+|||+.|+....| ..|+++++.+
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 457899 999976632 22233445554332 222211 2224578999999988877655 3588888876
Q ss_pred CeeE-EEecccccceeeEEEEEeCCCCceEEEeec---CcEEEEEECCCCceee-eeeeeeeeeeeeecCCCCCccceEE
Q 015371 72 NWKI-QKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARES-LANVTIHKGLDFSADGDEDEFGIFS 146 (408)
Q Consensus 72 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 146 (408)
+... ........ ......+.|+|||++|+..+. ...|.++|+.++.... ...+.. .......+
T Consensus 257 ~~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-----------~~~~~~~s 324 (751)
T 2xe4_A 257 LQSEDVCLYEEHN-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-----------REKGVRYD 324 (751)
T ss_dssp CGGGCEEEEECCC-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-----------CCTTCCEE
T ss_pred CchhcEEEEecCC-CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-----------CCCCceEE
Confidence 5321 11111111 123567899999999887653 3468888887652111 011100 01113455
Q ss_pred EEEcCCCCEEEEEe-cC----CeEEEEECCCCcceee-ecCcCC--CceEEEEecCCCCEEEEecCCCeEEEEe
Q 015371 147 VKFSTDGQELVAAG-SD----NFIYVYDLQANKCSLR-IPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWD 212 (408)
Q Consensus 147 ~~~~~~~~~l~~~~-~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~~l~~~~~dg~i~iwd 212 (408)
+.|+. +..|+..+ .+ ..|..+++.++..... +..+.. .+..+.+. .+.++++...++..++|-
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 55544 44444443 33 3788888765322222 222333 34455554 456677777788655554
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.82 E-value=6e-06 Score=64.12 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=119.3
Q ss_pred CceeEEEEcCCCCeEEEEeCC--CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVAASQE--SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
.....+.|++ +.++.+.+.+ ..|+.+|+.+++.+.........- -..+++. .++.....-.++.+.++|..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 4466889986 5666666665 489999999997766553322210 1123333 23444445568999999999887
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcC-----CCceEEEEec
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFAD 193 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~ 193 (408)
......... .-..+ .++++.|+.+..++.|.++|.++.+.+.++.... ..++.|.|.
T Consensus 97 ~~~ti~~~~---------------~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 97 PRARFRYPG---------------EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp EEEEEECSS---------------CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEEeCCC---------------CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 644333221 11233 3567778888778999999999998887775422 345677775
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeec-------------ccCCeEEEEecCCCCeEEEeec
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------------HLEGITFIDSRRDGRYFISNGK 250 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~ 250 (408)
++.+++....+..|.+.|.+ +++.+..+.. ...-.+.|+++|+++.|.+.+.
T Consensus 159 -~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 56666666667899999965 5555554431 1235689999998877766664
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.82 E-value=2.5e-05 Score=66.66 Aligned_cols=195 Identities=8% Similarity=0.041 Sum_probs=116.6
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCcee
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARE 120 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~ 120 (408)
.-.|.+..++ .+|+.+. ...|+..++...... ...... ..+..++|.+.+..|+.+ ...+.|..++.......
T Consensus 78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~-~~~~~~---~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT-LLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCE-EEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCcccc-ceeEeec-CccceeeccCCCcEE-EEecCC---CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 3445555553 3444443 356888888765322 222222 247889999866656544 45678999998766432
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 199 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 199 (408)
....... .....+++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|.++.++
T Consensus 152 ~~~~~~~--------------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 152 EVVSTGL--------------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp EEECSSC--------------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEeCCC--------------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEE
Confidence 2211100 024568888755555544 4467899988875543333343345678999995556666
Q ss_pred EEecCC-CeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEE-eecCCeEEEEeCCC
Q 015371 200 FSGSDD-SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRK 261 (408)
Q Consensus 200 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~ 261 (408)
++-... +.|..+++. +.....+ .........|+++|++..|.. -...+.|..+|+..
T Consensus 218 ~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 218 WTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 665555 788888863 2222222 223345689999986665544 44567788888764
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.80 E-value=1.8e-05 Score=66.49 Aligned_cols=200 Identities=7% Similarity=-0.046 Sum_probs=120.9
Q ss_pred cCceeEEEEcCCCCeEEEE-eCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECCCC
Q 015371 40 NSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSS 117 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~ 117 (408)
...+..++|++.+..|... ...+.|..++++...... ..... ......+++.+.+..|+ +-...+.|.+.+++..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-EEeCC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 3457899999766555544 456789999987653222 11111 11356788887555554 4455678999998765
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-C-CeEEEEECCCCcceeeecCcCCCceEEEEecCC
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 195 (408)
........ . ......+++.|.+..|+.+.. . +.|..+++........+...-.....|+++|.+
T Consensus 149 ~~~~l~~~-~-------------l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 149 HRKVLLWQ-S-------------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp SCEEEECT-T-------------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred ceEEEEeC-C-------------CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence 43222110 0 113678999996666665543 4 789999886543332223234457899999556
Q ss_pred CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+.+.++-+..+.|..+|+. .......+.........+++. .+.++++-...+.|..++..+
T Consensus 215 ~~lY~aD~~~~~I~~~~~d----G~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 215 RRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp TEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCEEEEEeCC----CCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 6666666677889999964 111122222233456677773 455666666677888887544
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.80 E-value=5.6e-06 Score=64.30 Aligned_cols=185 Identities=14% Similarity=0.050 Sum_probs=113.7
Q ss_pred ceEEEEEcCCCCEEEEEecC--CeEEEEECCCCcceeeecCcCCC-ceEEEEecCCCCEEEEecCCCeEEEEeccccccC
Q 015371 143 GIFSVKFSTDGQELVAAGSD--NFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 219 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (408)
-...+.|++ +.+..+.+.. +.|+.+|+++++.+..+...... -..++.. ++.+....-.++.+.+||.. +
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----t 94 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----T 94 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----c
Confidence 366888886 5555555554 48999999999988877543221 1345554 35556666678999999964 6
Q ss_pred CccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcce
Q 015371 220 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 299 (408)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
.+.+.++.....+ ..++ ++++.|+.+..++.|.++|..+.+. +
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~----------------------------------~ 137 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQ----------------------------------V 137 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCE----------------------------------E
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeE----------------------------------E
Confidence 6666666543322 3443 5666666666688999999887432 2
Q ss_pred eeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccC-------------CCCeeeeeEeCCC
Q 015371 300 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIY 366 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~ 366 (408)
..+.-....... .....+.+. +|+..+....+..|.+.|.++++.+..+... ..-.+.++++|++
T Consensus 138 ~~I~V~~~g~~~-~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~ 215 (243)
T 3mbr_X 138 GSIKVTAGGRPL-DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH 215 (243)
T ss_dssp EEEECEETTEEC-CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred EEEEEccCCccc-ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence 222111000000 000001111 4666666656789999999999998887521 1246889999987
Q ss_pred CeEEeec
Q 015371 367 PMLISSS 373 (408)
Q Consensus 367 ~~l~s~~ 373 (408)
+.|+.++
T Consensus 216 ~~lfVTG 222 (243)
T 3mbr_X 216 DRLFVTG 222 (243)
T ss_dssp TEEEEEE
T ss_pred CEEEEEC
Confidence 7554443
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=1.2e-05 Score=68.57 Aligned_cols=202 Identities=7% Similarity=-0.041 Sum_probs=122.3
Q ss_pred cccCceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECC
Q 015371 38 GMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVG 115 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~ 115 (408)
.....+..++|++.+..|. +-...+.|+.++++...... ..... ......+++.+.+..|+ +-...+.|.+.+++
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~~~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EECSS--CSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EEeCC--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 3345688999997655555 44566789999987653222 21111 11345688887555554 44456788888876
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-C-CeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
......... .. ......+++.|.+..|+.+.. . +.|..+++............-.....|+++|
T Consensus 190 g~~~~~l~~--~~------------l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~ 255 (386)
T 3v65_B 190 GAHRKVLLW--QS------------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY 255 (386)
T ss_dssp SCSCEEEEC--SS------------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG
T ss_pred CCceEEeec--CC------------CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC
Confidence 543222211 00 114688999987766666544 3 6899998865433333333344578999996
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.++.+.++-+..+.|..+|+. .......+.........+++ ..+.++++-...+.|..+|..+
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~d----G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 256 AGRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp GGTEEEEEETTTTEEEEECTT----SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEECCCCEEEEEeCC----CCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence 566666676777889999964 12222222223345677777 3455666666678888888544
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=6.1e-06 Score=71.46 Aligned_cols=154 Identities=10% Similarity=0.081 Sum_probs=97.4
Q ss_pred eEEEEEeCC-CCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC---
Q 015371 87 TITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--- 162 (408)
Q Consensus 87 ~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 162 (408)
....++++| ++..|.++...+.|+.+|+.+........ . ......++|++++++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~-------------~~~P~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--G-------------LSKVRTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--C-------------CSCEEEEEECTTSSEEEEEECCSCT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--C-------------CCCcceEEEeCCCCEEEEEeCCCCc
Confidence 457789998 46667776665889999988765433322 1 1147899999999977777642
Q ss_pred -C-eEEEEECCCCcce--eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-cccCCeEEEE
Q 015371 163 -N-FIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFID 237 (408)
Q Consensus 163 -g-~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~ 237 (408)
. .+..++. .+... ..+. .......+++.|.++.++++-..++.|..++.. ......... +.......++
T Consensus 203 ~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~gia 276 (430)
T 3tc9_A 203 DRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFHIQ 276 (430)
T ss_dssp TSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEEEE
T ss_pred ccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCcceeEE
Confidence 1 3444443 33222 2222 234467888984478888777788899999964 222211111 1223467899
Q ss_pred ecCCCCe-EEEeecCCeEEEEeCCC
Q 015371 238 SRRDGRY-FISNGKDQTTKLWDIRK 261 (408)
Q Consensus 238 ~~~~~~~-l~~~~~d~~i~iwd~~~ 261 (408)
++|++++ +++-...+.|..++...
T Consensus 277 ~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 277 FHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999994 45555677899987653
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.75 E-value=5.5e-05 Score=62.98 Aligned_cols=278 Identities=8% Similarity=0.028 Sum_probs=141.7
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecc-cccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE-TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
...+.+|.|.+++..+|+ +.+|.| +...+.++.-..... .......+.++.|.+ +..++ ++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 346999999888887775 456654 333344432222211 111233688899986 44444 455664433 222222
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCccee-eecCcCCCceEEEEecCCCC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGH 197 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~ 197 (408)
. -...... ......+..+.+.+++..++++ .+|.|+.- ...++.-. ........+..+.+. +++.
T Consensus 110 t--W~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~-~~~~ 175 (327)
T 2xbg_A 110 S--WSQIPLD---------PKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRS-PSGE 175 (327)
T ss_dssp S--CEECCCC---------TTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEEC-TTSC
T ss_pred C--ceECccc---------cCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEc-CCCc
Confidence 1 0110000 0001135677777777655554 45654332 22233222 223345678899998 6677
Q ss_pred EEEEecCCCeEEEEeccccccCCcccee-eecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCcccccccccccc
Q 015371 198 LIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 276 (408)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 276 (408)
+++.+...+..+-.|- .+..-.. -......+..+.+.+++..+ .++.+|.+++.+.....
T Consensus 176 ~~~~g~~G~~~~S~d~-----gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~------------- 236 (327)
T 2xbg_A 176 YVAVSSRGSFYSTWEP-----GQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE------------- 236 (327)
T ss_dssp EEEEETTSSEEEEECT-----TCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE-------------
T ss_pred EEEEECCCcEEEEeCC-----CCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC-------------
Confidence 7776655444444441 1111111 12345678889999888755 44567877766422100
Q ss_pred ccceeecccccceeeccCCCcceeeeecc--cceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEcc--
Q 015371 277 WDYRWMEYPSYARRLKHPHDQSLATYKGH--SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-- 352 (408)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 352 (408)
....+... .... .++.+.+.+++.+++++. +|.| ++....++.-..+..
T Consensus 237 ---------------------tW~~~~~~~~~~~~----~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~ 289 (327)
T 2xbg_A 237 ---------------------NWGELLSPLRRNSV----GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK 289 (327)
T ss_dssp ---------------------EECCCBCTTSSCCS----CEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT
T ss_pred ---------------------eeEeccCCcccCCc----ceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC
Confidence 00000000 0000 112223455566666654 6666 445555655554442
Q ss_pred -CCCCeeeeeEeCCCCeEEeecCCCcEEEEee
Q 015371 353 -HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 383 (408)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~ 383 (408)
....+.++.|.+++ .++.++.+|.|.-++-
T Consensus 290 ~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 290 KVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 34568889997554 4666678898776653
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.71 E-value=2.7e-05 Score=67.46 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=111.9
Q ss_pred CceeEEEEcCC--CCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCc-----EEEEEE
Q 015371 41 SRVYTSQFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNIVD 113 (408)
Q Consensus 41 ~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~w~ 113 (408)
.....++|+|+ +..|..+...+.|+.++..++... ..... ......++++++++ |+++...+ .+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~---~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTN---IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCC---CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecC---CCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 34678999985 444555544488999998776433 32221 22588999999999 55444321 122222
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcceeee-c-CcCCCceEEE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-P-AHKSDVNTVC 190 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~l~ 190 (408)
...... ....... ......++++| ++.+.++-..++.|+.+|..++.....+ . +....-..++
T Consensus 214 ~~~~~~-~~~~~~~-------------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia 279 (433)
T 4hw6_A 214 RASGFT-ERLSLCN-------------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIV 279 (433)
T ss_dssp GGGTTC-CEEEEEE-------------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEE
T ss_pred CCCCee-ccccccc-------------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEE
Confidence 221111 0000100 01356788999 6654444445788999999877652222 1 1122234699
Q ss_pred EecCCCC-EEEEecCCCeEEEEeccccccCCcc--ceeeec---------------ccCCeEEEEe---------cCCCC
Q 015371 191 FADETGH-LIFSGSDDSLCKVWDRRCFISKGRA--NGVLMG---------------HLEGITFIDS---------RRDGR 243 (408)
Q Consensus 191 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~---------------~~~~i~~~~~---------~~~~~ 243 (408)
|+ ++++ ++++-...+.|+.++... ..+.. ...+.+ .-.....+++ .+++.
T Consensus 280 ~d-pdG~~LYvad~~~~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ 356 (433)
T 4hw6_A 280 WH-PTGDWAYIIYNGKHCIYRVDYNR--ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD 356 (433)
T ss_dssp EC-TTSSEEEEEETTTTEEEEEEBCT--TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred Ee-CCCCEEEEEeCCCCEEEEEeCCC--CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence 99 7777 555666678899988541 11111 111111 1123566888 66777
Q ss_pred eEEEeecCCeEEEEeC
Q 015371 244 YFISNGKDQTTKLWDI 259 (408)
Q Consensus 244 ~l~~~~~d~~i~iwd~ 259 (408)
++++-...+.|+.++.
T Consensus 357 lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 357 FYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEETTTTEEEEECT
T ss_pred EEEEECCCCEEEEECC
Confidence 7776666778888874
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=5.4e-05 Score=59.69 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=98.5
Q ss_pred eeeEEEEEeCCCCceEE-EeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC
Q 015371 85 RWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 163 (408)
Q Consensus 85 ~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (408)
...+..++|+|+++.|+ +...++.|...|.. ++......+.... ....+++.+++.++++.-.++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~-------------D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVK-------------DLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCS-------------SEEEEEECSTTEEEEEETTTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCC-------------ChHHeEEeCCCEEEEEECCCC
Confidence 34699999999866555 56678888888987 4443322222111 377888888887666655678
Q ss_pred eEEEEECCCCcce---eee------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee-------
Q 015371 164 FIYVYDLQANKCS---LRI------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM------- 227 (408)
Q Consensus 164 ~i~i~d~~~~~~~---~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------- 227 (408)
.+.++++.....+ ... .........|+|. +.++.|+++.+.....+|.++. ......+....
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQ 169 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHT
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcc-cccCCceeeecchhhccc
Confidence 8999987654321 111 1234557899999 6666666666655556666531 11111122221
Q ss_pred cccCCeEEEEecCCCCe-EEEeecCCeEEEEeCCC
Q 015371 228 GHLEGITFIDSRRDGRY-FISNGKDQTTKLWDIRK 261 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~ 261 (408)
.+...+.+++++|.... ++.......+..+|...
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 12345788999996554 44555567788888765
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.69 E-value=1.9e-05 Score=68.39 Aligned_cols=235 Identities=11% Similarity=0.095 Sum_probs=132.7
Q ss_pred cceeeEecCC---ccEEEeecCceEEEEEE-ecCceeeecccCceeEEEEcCCCCeEEEEeCC---C-cEEEEEcCCCee
Q 015371 3 VGREVNYSGR---GRFSAADSCHVLSRYLP-VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---S-NIKVYNVDKNWK 74 (408)
Q Consensus 3 ~~~~~~~s~d---g~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g-~i~iw~~~~~~~ 74 (408)
....|+++|+ |.+..++....+.++-+ ......+.+.......++++++|+++++.... . .+...+......
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 4568899985 66655554444444443 22233444445668999999999954444311 1 133333222211
Q ss_pred EEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCCCce-eeeeeeeeeeeeeeecCCCCCccceEEEEEcCC
Q 015371 75 IQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSAR-ESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD 152 (408)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (408)
...... .......++++| ++.+.++-..++.|+.++..++.. ........ ......++|+|+
T Consensus 220 ~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-------------~~~~~~ia~dpd 283 (433)
T 4hw6_A 220 ERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-------------KGSNFHIVWHPT 283 (433)
T ss_dssp CEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-------------CSSCEEEEECTT
T ss_pred cccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-------------CCCcccEEEeCC
Confidence 001111 111356688999 565555555678899998876554 21111100 002346999999
Q ss_pred CCEEEEEe-cCCeEEEEECC--CCcce--eeecC---------------cCCCceEEEE---------ecCCCCEEEEec
Q 015371 153 GQELVAAG-SDNFIYVYDLQ--ANKCS--LRIPA---------------HKSDVNTVCF---------ADETGHLIFSGS 203 (408)
Q Consensus 153 ~~~l~~~~-~dg~i~i~d~~--~~~~~--~~~~~---------------~~~~v~~l~~---------~~~~~~~l~~~~ 203 (408)
+++|+.+. ..+.|+.++.. ++... ..+.+ .-.....+++ . .+++++++-.
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~ 362 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDR 362 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEEC
Confidence 99666665 46789998865 23211 11111 1123567888 4 6777777777
Q ss_pred CCCeEEEEeccccccCCccceeeecc------------------cCCeEEEEec-CCCCeEEEeecCCeEEEEeCC
Q 015371 204 DDSLCKVWDRRCFISKGRANGVLMGH------------------LEGITFIDSR-RDGRYFISNGKDQTTKLWDIR 260 (408)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~ 260 (408)
.++.|+.++. .+. +..+.+. -.....|++. +++.++++-..++.|+.++++
T Consensus 363 ~n~~I~~~~~-----~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 363 DSHTVRVLTP-----EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEECT-----TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEECC-----CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7889999884 222 2222111 1236789999 667666666667788887754
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.68 E-value=0.00012 Score=62.81 Aligned_cols=205 Identities=9% Similarity=-0.059 Sum_probs=122.1
Q ss_pred eeecccCceeEEEEcCCCCeEEEE-eCCCcEEEEEcCCCe---eEEEecccccceeeEEEEEeCCCCceEE-EeecCcEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIV 109 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 109 (408)
.+......+..++|++.+..|..+ ...+.|+.++++... ....... ........+++.+.+..|+ +-...+.|
T Consensus 106 ~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 106 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeE
Confidence 344455678999999866555554 456788888886521 1111111 1112577889988544444 44567889
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCce
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
.+.+++......+.... ......|++.|.+.+|+.+.. .+.|...++........+...-....
T Consensus 184 ~~~~~~g~~~~~l~~~~--------------~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~ 249 (400)
T 3p5b_L 184 SVADTKGVKRKTLFREN--------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 249 (400)
T ss_dssp EEECTTTCSEEEEEECS--------------SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEEeCCCCceEEEEeCC--------------CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence 99988765433222111 113778999997666766653 37899999865443333333335678
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-e--cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-M--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.|++++.++.+.++-...+.|..+|+. +.....+ . .......++++. .+.++++-...+.|..+|..+
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-----SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCC-----CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC
Confidence 999995555555565667889999974 2222222 1 122345567763 345556666677788888655
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.67 E-value=9.9e-05 Score=61.10 Aligned_cols=201 Identities=9% Similarity=-0.049 Sum_probs=120.3
Q ss_pred ccCceeEEEEcCCCCeEEE-EeCCCcEEEEEcCCC---eeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEE
Q 015371 39 MNSRVYTSQFSNDGSFFVA-ASQESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVD 113 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t-~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~ 113 (408)
....+..++|++++..|.. -..++.|..++++.. ......... . ......+++.+.+..|+ +-...+.|.+.+
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-C-CCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 3456789999987655554 455688999998751 122222111 1 11356788887555554 445678999999
Q ss_pred CCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC--CeEEEEECCCCcceeee-cCcCCCceEEE
Q 015371 114 VGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--NFIYVYDLQANKCSLRI-PAHKSDVNTVC 190 (408)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~v~~l~ 190 (408)
............. ......+++.|.+..|+.+... +.|...++... ....+ ...-.....|+
T Consensus 106 ~~g~~~~~~~~~~--------------~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla 170 (316)
T 1ijq_A 106 TKGVKRKTLFREN--------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGIT 170 (316)
T ss_dssp TTSSSEEEEEECT--------------TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEE
T ss_pred CCCCceEEEEECC--------------CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEE
Confidence 8765432221100 1146789999876666666543 68988888543 33333 22335678999
Q ss_pred EecCCCCEEEEecCCCeEEEEeccccccCCccceeee---cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 191 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
+++.++.+.++-+..+.|..+|+. +.....+. ........+++. .+.++++-...+.|..+|..++
T Consensus 171 ~d~~~~~lY~~D~~~~~I~~~d~d-----g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 171 LDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETT-----SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EeccCCEEEEEECCCCeEEEEecC-----CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 995455566666677899999974 22222221 122345677775 4566666666788998887553
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=4.1e-05 Score=66.50 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=93.0
Q ss_pred ceeEEEEcCC-C-CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEe-------CCCCceEEEeecCc-----
Q 015371 42 RVYTSQFSND-G-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL-------SPDQRFLVYASICA----- 107 (408)
Q Consensus 42 ~v~~~~~s~~-~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg----- 107 (408)
....|+|+|. . +++++-...+.|++.|++++..................++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999983 4 44444444467888888776433222121112235889999 99999777665543
Q ss_pred --EEEEEECCC-Cceee-e--eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE-EEecCCeEEEEECC-------CC
Q 015371 108 --IVNIVDVGS-SARES-L--ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDNFIYVYDLQ-------AN 173 (408)
Q Consensus 108 --~i~~w~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~-------~~ 173 (408)
.|.+++... +.... . ..+.... ....++++|++..|+ +-..++.|+.+|+. ++
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-------------~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-------------QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEES-------------CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred CceEEEEecCCCCceeecccceeeccCC-------------CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 255555333 12110 0 1111111 256788899555555 45567889999987 55
Q ss_pred cc-----------eee-ec-CcCCCceEEEEecCCCCE-EEEecCCCeEEEEecc
Q 015371 174 KC-----------SLR-IP-AHKSDVNTVCFADETGHL-IFSGSDDSLCKVWDRR 214 (408)
Q Consensus 174 ~~-----------~~~-~~-~~~~~v~~l~~~~~~~~~-l~~~~~dg~i~iwd~~ 214 (408)
.. ... +. ........|+|+ ++++. +++-+....|+.++..
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence 43 111 11 123456899999 78884 5555677889987753
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.66 E-value=3.1e-06 Score=77.88 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=71.2
Q ss_pred EEEeCC-CCceEEEeecCc-----------EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 90 DTSLSP-DQRFLVYASICA-----------IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 90 ~~~~~~-~~~~l~~~~~dg-----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
.+++.+ +++.++.|+.+. .+.+||..+.+........... .....++++..+++.++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-----------~~~~~~~~~~~~g~lyv 258 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-----------DMFCPGISMDGNGQIVV 258 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-----------CCSSCEEEECTTSCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC-----------CCccccccCCCCCCEEE
Confidence 456667 888888876532 6888998887654333221111 11244567788999999
Q ss_pred EEec-CCeEEEEECCCCcceeeecCcCCC-ceEEEEecCCCCEEEEec-CC-----CeEEEEecc
Q 015371 158 AAGS-DNFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGS-DD-----SLCKVWDRR 214 (408)
Q Consensus 158 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~~~~-~d-----g~i~iwd~~ 214 (408)
+|+. +..+.+||..+++....-..+... -.+++.. +++++++.|+ .+ ..+.+||..
T Consensus 259 ~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 259 TGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp ECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 8884 468999999876543322212222 2344554 5888999988 34 468999964
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.54 E-value=0.00023 Score=58.89 Aligned_cols=184 Identities=7% Similarity=-0.004 Sum_probs=109.3
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCC----ceeeeeeeeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSS----ARESLANVTIH 128 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~----~~~~~~~~~~~ 128 (408)
+|+.+.. ..|+..++.+...... .... ..+..++|++++..|+.+ ..++.|..+++.+. ..... ....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~-~~~~---~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~ 75 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSL-IPNL---RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRD 75 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEE-ECSC---SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSS
T ss_pred EEEEECC-CeEEEEECCCcceEeh-hcCC---CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCC
Confidence 4444443 4688999887643322 2211 257889999876656555 45688999998752 11111 1000
Q ss_pred eeeeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCC-C
Q 015371 129 KGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-S 206 (408)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g 206 (408)
......+++.+.+..|+.+ ...+.|.++++........+.........+++.|.++.++++.... +
T Consensus 76 ------------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 76 ------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA 143 (316)
T ss_dssp ------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred ------------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCC
Confidence 0135678888755555544 5578999999875443333333345678999995456555555443 7
Q ss_pred eEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCC
Q 015371 207 LCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 261 (408)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 261 (408)
.|...++. +.....+ ...-.....+++++++..|..+ ...+.|..+|+..
T Consensus 144 ~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 144 KIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 88888863 2322222 2233567899999877665544 4567899999864
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.53 E-value=0.00033 Score=60.06 Aligned_cols=187 Identities=7% Similarity=-0.026 Sum_probs=110.8
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEECCCCce--eeeeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSAR--ESLANVTIHK 129 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~--~~~~~~~~~~ 129 (408)
.+|+.+. ...|+..+++....... ... ...+..++|++.+..|..+. ..+.|+.+++..... .........
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~-~~~---~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~- 157 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSL-IPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD- 157 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEE-ECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-
T ss_pred ceeEEec-cceeEEEccCCcceeEe-ccc---cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-
Confidence 3455444 35788888876533222 221 22588999998766666554 567888888865321 000111100
Q ss_pred eeeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecC-CCe
Q 015371 130 GLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSL 207 (408)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~ 207 (408)
......+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|..+.++++-.. .+.
T Consensus 158 -----------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 158 -----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp -----------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred -----------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE
Confidence 1146788898855555544 457899999987655444444344567899999545555555433 477
Q ss_pred EEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCC
Q 015371 208 CKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 261 (408)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 261 (408)
|...++. +.....+ ...-.....|++++++..|..+ ...+.|..+|+..
T Consensus 227 I~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 227 IKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 8888863 3222222 2233567899999877766555 4467788888765
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.49 E-value=0.00031 Score=57.99 Aligned_cols=187 Identities=6% Similarity=-0.005 Sum_probs=109.0
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCceeeeeeeeeeeeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTIHKGLD 132 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (408)
+|+.+. ...|+..+++.......... . ....+.++.|.+.+..|..+ ...+.|..++...............
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l---- 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVV-G-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---- 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEE-E-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC----
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEe-c-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC----
Confidence 344443 45789999876531111111 1 11257789999865555544 4567899999876532111100000
Q ss_pred eecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec-CCCeEEE
Q 015371 133 FSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKV 210 (408)
Q Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~i 210 (408)
.....+++.+.+..|+.+ ...+.|.++++........+.........+++.|..+.++++-. ..+.|..
T Consensus 79 ---------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 79 ---------LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIER 149 (318)
T ss_dssp ---------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEE
T ss_pred ---------CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEE
Confidence 035678888755555544 45688999998754433333334456789999954555555542 3578888
Q ss_pred EeccccccCCccceee-ecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCC
Q 015371 211 WDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 261 (408)
Q Consensus 211 wd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 261 (408)
.++. +.....+ ...-.....+++++++..|..+ +..+.|..+|+..
T Consensus 150 ~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 150 AGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 8863 2222222 2223456899999866655544 4567899998764
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00049 Score=59.87 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=98.3
Q ss_pred eEEEEEeCC-CCceEEEeec-CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE-------cCCCCEEE
Q 015371 87 TITDTSLSP-DQRFLVYASI-CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF-------STDGQELV 157 (408)
Q Consensus 87 ~v~~~~~~~-~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~ 157 (408)
....|+|+| +...|+++.. .+.|++.|+.++....+..... ........++| ++++..|+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-----------~~~~~p~~ia~~~~~~~~d~~G~~ly 208 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-----------IPTNRIRSIAFNKKIEGYADEAEYMI 208 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-----------SSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-----------cccCCCcEEEEeecccccCCCCCEEE
Confidence 366899998 4555555544 4678889988876654432211 01114789999 99999777
Q ss_pred EEecCC-------eEEEEECCC-Ccce-----eeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccc---cCCc
Q 015371 158 AAGSDN-------FIYVYDLQA-NKCS-----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI---SKGR 221 (408)
Q Consensus 158 ~~~~dg-------~i~i~d~~~-~~~~-----~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~ 221 (408)
++...+ .|.+++... +... ..+.. ......++++|.++.++++-..++.|..+|+.... ..+.
T Consensus 209 vad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 209 VAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp EEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred EEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 776543 366776443 2322 12222 23456788885577888888889999999975100 0111
Q ss_pred c-----------cee-e-ecccCCeEEEEecCCCCe-EEEeecCCeEEEEeCC
Q 015371 222 A-----------NGV-L-MGHLEGITFIDSRRDGRY-FISNGKDQTTKLWDIR 260 (408)
Q Consensus 222 ~-----------~~~-~-~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~ 260 (408)
. ... + .+.......++|+|+|++ +++-.....|+.++..
T Consensus 288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1 111 1 122344678999999995 4444556778886654
No 287
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.48 E-value=0.00028 Score=56.79 Aligned_cols=267 Identities=7% Similarity=0.105 Sum_probs=161.5
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED 140 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (408)
+.+|.|-|+.+...+.+..... + +.-.+|..+.||.-. ...+.++|+++........+ .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A--d----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~--~e----------- 107 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA--D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TD----------- 107 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC--S----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC--SS-----------
T ss_pred CCEEEEEECCCCCCcccccccc--c----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec--CC-----------
Confidence 3478888988765443222111 1 233588888888765 78999999998866433332 22
Q ss_pred ccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCc----CCCceEEEEecCCCCEEEEecC-------CCeE
Q 015371 141 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAH----KSDVNTVCFADETGHLIFSGSD-------DSLC 208 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~v~~l~~~~~~~~~l~~~~~-------dg~i 208 (408)
+|..=.|-.+.. |+..+ +..|+-|+++.. .+.+.+..| ...|..-..+ ++.++++..+- .|.+
T Consensus 108 --~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 108 --DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp --CEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEEE
T ss_pred --ccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC-CCCCEEEEEeEeccCCccceeE
Confidence 377777876554 44443 578999999753 455555433 2455555666 66776654432 4678
Q ss_pred EEEeccccccCCccceeeecccCCeEEEEecCC---CCeEEEeec---CCeEEEEeCCCC-cCcccccccccccccccee
Q 015371 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGK---DQTTKLWDIRKM-SSNTTDNSRLRDYDWDYRW 281 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 281 (408)
.+|.. ..+.-+.+.+|......+.+..+ .++++.+.. .+.+++.++... ........
T Consensus 183 QLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k----------- 246 (365)
T 2xzh_A 183 QLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK----------- 246 (365)
T ss_dssp EEEET-----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC-----------
T ss_pred EEEee-----cccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc-----------
Confidence 89985 56666778888776655544322 123343333 257889888552 11111100
Q ss_pred ecccccceeeccCCCcceeee-ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeee
Q 015371 282 MEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 360 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (408)
+.+..+ ........ ..++..|+.-..+..-+.-|.|++||++++.++..-+-....|..-
T Consensus 247 ---------------k~vdi~fppea~~DF----PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~t 307 (365)
T 2xzh_A 247 ---------------KAVDVFFPPEAQNDF----PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 307 (365)
T ss_dssp ---------------EEEEECCCTTCTTCC----EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ---------------ccceeeCCccccCCc----eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEe
Confidence 011111 11111111 1122344556788888899999999999999999888777788766
Q ss_pred eEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 361 CWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 361 ~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
+-+....-++.....|.|.--.+++..
T Consensus 308 a~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 308 APHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cccCCCCcEEEEcCCCEEEEEEECccc
Confidence 666555556666788888887777643
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.47 E-value=0.0009 Score=62.32 Aligned_cols=186 Identities=7% Similarity=-0.039 Sum_probs=107.9
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCcee--eeeeeeeeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARE--SLANVTIHKG 130 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~--~~~~~~~~~~ 130 (408)
+|+.+. ...|+..++....... +... ...+..++|.+....|+.+ ...+.|+.+++...... ....+...
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~-l~~~---~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-- 469 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTS-LIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-- 469 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEE-EECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--
T ss_pred cccccc-ccceeEeeccCCccee-eecC---CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC--
Confidence 444443 3468888876553222 2221 1257789999865555544 45678888888653210 01111100
Q ss_pred eeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCC-CeE
Q 015371 131 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-SLC 208 (408)
Q Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i 208 (408)
......|++.+.+..|+.+. ..+.|.+.++........+...-.....|++.|..+.++++-..+ +.|
T Consensus 470 ----------l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 470 ----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred ----------CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence 11366788888776666554 468999999975543333333445688999995556555554333 778
Q ss_pred EEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEe-ecCCeEEEEeCCC
Q 015371 209 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 261 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 261 (408)
...++. +.....+ .........|++.+.+..|+.+ ...+.|...++..
T Consensus 540 ~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 540 KKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 888863 3333333 2333567899999766655554 4456788888765
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.46 E-value=0.00039 Score=57.41 Aligned_cols=230 Identities=11% Similarity=-0.012 Sum_probs=133.6
Q ss_pred eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCccee
Q 015371 99 FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSL 177 (408)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 177 (408)
+|+.+. ...|+..++............... .+..+.|.+.+..|+.+ ...+.|..+++..+....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~-------------~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~ 71 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLE-------------DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ 71 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEE-------------EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCC-------------ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE
Confidence 344433 467899999876421112222222 36789999865555555 456889999987664222
Q ss_pred -eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEee--cCCe
Q 015371 178 -RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG--KDQT 253 (408)
Q Consensus 178 -~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~--~d~~ 253 (408)
.+...-.....+++.+..++++++-...+.|.++++. +.....+ .........+++.|.+..|.... ..+.
T Consensus 72 ~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~ 146 (318)
T 3sov_A 72 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 146 (318)
T ss_dssp EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence 2222234567899985567777777778899999964 2222222 23445678999998766555544 2467
Q ss_pred EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEe-eC
Q 015371 254 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-SS 332 (408)
Q Consensus 254 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~ 332 (408)
|...++... ....+.... ......+++++++..|..+ +.
T Consensus 147 I~r~~~dG~-----------------------------------~~~~~~~~~-----l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 147 IERAGMDGS-----------------------------------SRFIIINSE-----IYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEEEETTSC-----------------------------------SCEEEECSS-----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCC-----------------------------------CeEEEEECC-----CCCccEEEEeccCCEEEEEECC
Confidence 777776541 111111000 0112334677655555554 45
Q ss_pred CCeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 333 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+.|..+|+........+...-.....+++.. +.++.+-...+.|..++..+++.
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 68899999864333223332344566777754 34555555678888888865543
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.44 E-value=0.0004 Score=56.50 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=110.7
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEe-CCCcEEEEEcCCCeeEEEeccc----ccceeeEEEEEe---CCCCceEEEeec
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIET----KALRWTITDTSL---SPDQRFLVYASI 105 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~---~~~~~~l~~~~~ 105 (408)
..+....-.--+++|.+....|..++ ..++|..|+...+......... ......+..+.| .|+++++++...
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 34445555666889988655566555 7899999998755332222211 111224688999 688777775431
Q ss_pred -------------CcEEEEEECC---CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-CeEEEE
Q 015371 106 -------------CAIVNIVDVG---SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-NFIYVY 168 (408)
Q Consensus 106 -------------dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~ 168 (408)
+..+..+|+. +++......+...... +.............++..++|+..++++.. +.|...
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~-~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE-FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH-HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc-ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 5779999998 6655433332211000 000000001148899999999988888888 888887
Q ss_pred ECCCCcceeee------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 169 DLQANKCSLRI------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 169 d~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
+.... ....+ .......+.|++. |++++|++....|.+..+|++
T Consensus 165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 165 SADGK-TVSTFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CTTSC-CEEEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred eCCCC-EEeeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence 76543 22222 1122346799999 788877777669999999976
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.43 E-value=0.00098 Score=62.10 Aligned_cols=207 Identities=10% Similarity=-0.046 Sum_probs=121.8
Q ss_pred eeecccCceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCe---eEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEE
Q 015371 35 KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIV 109 (408)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 109 (408)
.+......+..++|++.+..|+ +-...+.|+.+++.... ....... ........|++.+.++.|+.+ ...+.|
T Consensus 418 ~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 418 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 3444456688999998555444 44556788888886531 1111111 111246678888877555544 457899
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCce
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
.+.++.......+.... ......|++.|.+.+|+.+.. .+.|.+.++........+...-....
T Consensus 496 ~v~~ldG~~~~~l~~~~--------------l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 496 SVADTKGVKRKTLFREN--------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561 (791)
T ss_dssp EEEETTSSSEEEEEECT--------------TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred EEEeCCCCeEEEEEeCC--------------CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence 99998765543222111 113778999997666766653 26899999865444333343345788
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-ec--ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCc
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 263 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 263 (408)
.|++.+..+.++++-...+.|...++. +.....+ .. ......+|++.. +.++++-...+.|...|..++.
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~d-----G~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecC-----CCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 999995566666665667789999864 2222222 21 123345666642 3445555556778877765543
No 292
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.34 E-value=0.00053 Score=57.61 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=118.6
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecCceeee------cccCceeEEEEcCC---CCeEEEE-eC---C----CcEE
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD------GMNSRVYTSQFSND---GSFFVAA-SQ---E----SNIK 65 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~v~~~~~s~~---~~~l~t~-~~---d----g~i~ 65 (408)
..+.++|.|||+++.+.....+..+ .......+. ........|+++|+ +..|..+ +. + ..|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~-d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLI-SPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEE-CSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEE-eCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 4578999999998888766555555 222212221 12356889999997 4444443 32 2 5677
Q ss_pred EEEcCCC------ee-EEEecc-cccceeeEEEEEeCCCCceEEEeecC-------------cEEEEEECCCCce-----
Q 015371 66 VYNVDKN------WK-IQKDIE-TKALRWTITDTSLSPDQRFLVYASIC-------------AIVNIVDVGSSAR----- 119 (408)
Q Consensus 66 iw~~~~~------~~-~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~~w~~~~~~~----- 119 (408)
.|+.... .. +..... ...| ....++|.|||.+.++.+.. |.|.-++.+..-.
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7776653 11 111011 1122 34679999999866664321 3444444432100
Q ss_pred --eeeeeeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecCC----eEEEEECCCCc------------------
Q 015371 120 --ESLANVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDN----FIYVYDLQANK------------------ 174 (408)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~------------------ 174 (408)
..+.. ..+. ....++|+| ++. |+++.... .|.+.. .+.
T Consensus 187 ~~~~i~a-~G~r-------------np~Gla~d~~~g~-l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 187 PNSPIWS-YGHR-------------NPQGIDWHRASGV-MVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVD 249 (354)
T ss_dssp TTCCEEE-ECCS-------------CCCEEEECTTTCC-EEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCcEEE-EccC-------------CcceEEEeCCCCC-EEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcC
Confidence 00000 0111 256789999 555 44443321 243332 111
Q ss_pred ceeeecCcCCCceEEEEec------CCCCEEEEecCCCeEEEEeccccccCCccc--eee-ecccCCeEEEEecCCCCeE
Q 015371 175 CSLRIPAHKSDVNTVCFAD------ETGHLIFSGSDDSLCKVWDRRCFISKGRAN--GVL-MGHLEGITFIDSRRDGRYF 245 (408)
Q Consensus 175 ~~~~~~~~~~~v~~l~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~-~~~~~~i~~~~~~~~~~~l 245 (408)
++..+.........++|.. .++.++++....+.|...++.. .+... ..+ .+....+..+++.|||.+.
T Consensus 250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~~rp~~v~~~pDG~ly 326 (354)
T 3a9g_A 250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD---NMEVRKISTFFKNVFGRLRDVVIDDDGGIL 326 (354)
T ss_dssp CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG---GGCEEEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC---CCcccceeeeccCCCCCeeEEEECCCCcEE
Confidence 1122211234567888841 4567777777777888888642 11111 122 2224578999999999866
Q ss_pred EEee
Q 015371 246 ISNG 249 (408)
Q Consensus 246 ~~~~ 249 (408)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6653
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.33 E-value=1.6e-05 Score=73.39 Aligned_cols=178 Identities=7% Similarity=-0.013 Sum_probs=100.8
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee-cCcEEEEEECCCC----ceeeeeeeeeeeeeeeec
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSS----ARESLANVTIHKGLDFSA 135 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~----~~~~~~~~~~~~~~~~~~ 135 (408)
...|+..++....... ..... ..+..++|.+.+..|+.+. ..+.|+.+++.+. ...... ...
T Consensus 385 ~~~I~~id~~~~~~~~-~~~~~---~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--~~~------- 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS-LIPNL---RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRD------- 451 (699)
T ss_dssp TTC-CEECTTSCCEEC-CSCCC---TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--CSC-------
T ss_pred ccceEEEeCCCCccee-eeccC---cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--eCC-------
Confidence 3568888877653322 22111 1466789998777676654 4578888888751 111110 000
Q ss_pred CCCCCccceEEEEEcCCCCEEEEE-ecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCC-CeEEEEec
Q 015371 136 DGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-SLCKVWDR 213 (408)
Q Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~iwd~ 213 (408)
......|++.+.+..|+.+ ...+.|.++++........+.........|++.|..+.++++-... +.|..+++
T Consensus 452 -----~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 452 -----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp -----C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred -----CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 0124567887654445444 4467899999875543333333335568899984455555544333 67888776
Q ss_pred cccccCCccceee-ecccCCeEEEEecCCCCeE-EEeecCCeEEEEeCCC
Q 015371 214 RCFISKGRANGVL-MGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRK 261 (408)
Q Consensus 214 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 261 (408)
. +.....+ .........|+++|++..| ++-...+.|..+++..
T Consensus 527 d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 527 N-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp S-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred C-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 3 2222222 1223445789999876544 4445567899988764
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.32 E-value=0.001 Score=55.89 Aligned_cols=267 Identities=7% Similarity=0.106 Sum_probs=163.9
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED 140 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (408)
+.+|.|-|+.++..+.+..... -+.-.+|..+.||.-. ...+.++|+++........+ ..
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A------dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e----------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA------DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TD----------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC------SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SS-----------
T ss_pred CCeEEEEECCCCCcceeccccc------ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CC-----------
Confidence 3478889988765443222111 1234688888887765 78999999998865333332 22
Q ss_pred ccceEEEEEcCCCCEEEEEecCCeEEEEECCCC-cceeeecCc----CCCceEEEEecCCCCEEEEec-------CCCeE
Q 015371 141 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSLC 208 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~v~~l~~~~~~~~~l~~~~-------~dg~i 208 (408)
+|..=.|-.+.. |+..+ +..|+-|++... .+...+..| ...|..-..+ ++.++++..+ -.|.+
T Consensus 107 --~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 107 --DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp --CCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEEEE
T ss_pred --CceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccceE
Confidence 366667765554 44443 578999999743 455555433 2455555666 6777766433 24678
Q ss_pred EEEeccccccCCccceeeecccCCeEEEEecCCC---CeEEEeec---CCeEEEEeCCCC-cCcccccccccccccccee
Q 015371 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNGK---DQTTKLWDIRKM-SSNTTDNSRLRDYDWDYRW 281 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 281 (408)
.+|.. ..+.-+.+.+|......+.+..+. .+++.+.. .+.+++.++... ........
T Consensus 182 QLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k----------- 245 (494)
T 1bpo_A 182 QLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK----------- 245 (494)
T ss_dssp EEEES-----TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC-----------
T ss_pred EEeec-----cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc-----------
Confidence 89985 566667788887777666554221 23444433 278999988653 11111100
Q ss_pred ecccccceeeccCCCcceeee-ecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeee
Q 015371 282 MEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 360 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (408)
+.+..+ ........ ..++..|+.-..+..-+.-|.|++||++++.++..-+-...+|..-
T Consensus 246 ---------------k~vdv~fppe~~~DF----Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 246 ---------------KAVDVFFPPEAQNDF----PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp ---------------EEEECCCCTTSTTCC----EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ---------------eeeeeeCCcccccCc----eeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence 001111 11111111 1122345556788888999999999999999998888777788777
Q ss_pred eEeCCCCeEEeecCCCcEEEEeeCCCC
Q 015371 361 CWHPIYPMLISSSWDCNIVRWEIPGIG 387 (408)
Q Consensus 361 ~~~~~~~~l~s~~~dg~v~iw~~~~~~ 387 (408)
+-+....-++.....|.|.--.+++..
T Consensus 307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 307 APHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCCCCcEEEEccCceEEEEEEcccc
Confidence 776666666667788988887776643
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.27 E-value=0.00055 Score=56.21 Aligned_cols=193 Identities=12% Similarity=0.200 Sum_probs=116.1
Q ss_pred CCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecC---CCC---EEEEecC---CCeEEEEeccccccCCcc
Q 015371 152 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE---TGH---LIFSGSD---DSLCKVWDRRCFISKGRA 222 (408)
Q Consensus 152 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~---~~~---~l~~~~~---dg~i~iwd~~~~~~~~~~ 222 (408)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|. .+. ++++... +++|.+|++. .....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD---p~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID---GKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC---TTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC---CCCCc
Confidence 3455666667889999999 7888888763 56777776620 111 2333333 5789999763 11222
Q ss_pred ceeeec------cc-CCeEEEEe--cCC-CC-eEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceee
Q 015371 223 NGVLMG------HL-EGITFIDS--RRD-GR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 291 (408)
Q Consensus 223 ~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
+..+.. .. ..+..+++ +|. ++ ++++...+|.+..|++........
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------------------ 168 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------------------ 168 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------------------
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------------------
Confidence 333311 11 45667777 664 43 677888899999999854111000
Q ss_pred ccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECC-----CCceeEEEc-cC-CCCeeeeeE--
Q 015371 292 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-----SGAQVAKLD-FH-NAPVRDCCW-- 362 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~-~~-~~~v~~~~~-- 362 (408)
..+.++.+..... ...|+ ..+....|+.+-++..|..++.+ +++.+..+. ++ ...+..|++
T Consensus 169 ---~~~lVR~f~lgsq---~Egcv----vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 169 ---SGKKVRAFKMNSQ---TEGMA----ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp ---EEEEEEEEECSSC---EEEEE----EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred ---cceEEEEecCCCC---cceEE----EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 0233445444332 22333 44457889999998778888865 345555552 22 246888887
Q ss_pred eCCCC-eEEeec-CCCcEEEEeeC
Q 015371 363 HPIYP-MLISSS-WDCNIVRWEIP 384 (408)
Q Consensus 363 ~~~~~-~l~s~~-~dg~v~iw~~~ 384 (408)
.++++ +|++++ .++...+||..
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 45556 565555 57789999986
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.0013 Score=54.72 Aligned_cols=224 Identities=9% Similarity=0.006 Sum_probs=113.4
Q ss_pred ceeeEecCCccEEEeecCceEEEEEEecCceeeec-----ccCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDG-----MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
.++|.+.+++...+.+....+.+..+....++... ....+.++.|++ +..++ ++.++.|.. ..+.++.-...
T Consensus 38 ~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~ 114 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQI 114 (327)
T ss_dssp EEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEEC
T ss_pred EEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceEC
Confidence 35677776676655555444433333333332221 244688999986 44444 455664433 33334333322
Q ss_pred cccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCC-CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEE
Q 015371 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 157 (408)
Q Consensus 79 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (408)
.........+..+.+.+++..++++ .+|.| |.... ++. -....... ...+..+.+.+++.+++
T Consensus 115 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~t-W~~~~~~~------------~~~~~~~~~~~~~~~~~ 178 (327)
T 2xbg_A 115 PLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKN-WQALVQEA------------IGVMRNLNRSPSGEYVA 178 (327)
T ss_dssp CCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSS-EEEEECSC------------CCCEEEEEECTTSCEEE
T ss_pred ccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCC-CEEeecCC------------CcceEEEEEcCCCcEEE
Confidence 2211122246777777777666655 45543 22222 221 11111111 12488899999888776
Q ss_pred EEecCCeEEEEECCCCcceeee-cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeee----cccCC
Q 015371 158 AAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----GHLEG 232 (408)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~ 232 (408)
++. +|.++.-+-..++.-..+ ......+..+.+. +++.++ .++.+|.+++.+.. .++.-..+. .+...
T Consensus 179 ~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~G~~~~s~~D----~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 179 VSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFT-PDGRLW-MIVNGGKIAFSDPD----NSENWGELLSPLRRNSVG 251 (327)
T ss_dssp EET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEEC-TTSCEE-EEETTTEEEEEETT----EEEEECCCBCTTSSCCSC
T ss_pred EEC-CCcEEEEeCCCCCceeECCCCCCCccceeEEC-CCCCEE-EEeCCceEEEecCC----CCCeeEeccCCcccCCcc
Confidence 664 455544331112211111 2345678889988 666655 44557887776311 111111111 12245
Q ss_pred eEEEEecCCCCeEEEeecCCeE
Q 015371 233 ITFIDSRRDGRYFISNGKDQTT 254 (408)
Q Consensus 233 i~~~~~~~~~~~l~~~~~d~~i 254 (408)
+..+.+.+++..++++. +|.+
T Consensus 252 ~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EEEEEESSSSCEEEEES-TTCE
T ss_pred eEEEEecCCCEEEEEeC-CCeE
Confidence 88899988777666554 6655
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.25 E-value=0.0026 Score=57.80 Aligned_cols=192 Identities=14% Similarity=0.042 Sum_probs=107.2
Q ss_pred ceeeEecCCccE-EEee-cCceEEEEEEecC--ce-eeecccCceeEEEEcCCCCeEE-EEeCCCcEEEEEcCCCeeEEE
Q 015371 4 GREVNYSGRGRF-SAAD-SCHVLSRYLPVNG--PW-KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQK 77 (408)
Q Consensus 4 ~~~~~~s~dg~~-~~~~-~~~~~~~~~~~~~--~~-~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~ 77 (408)
...|+|.+.+.. ..++ ....+.+...... .. .+..--.....+++.+.+..|+ +-...+.|.+.+++..... .
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~ 120 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-V 120 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-E
Confidence 456788875443 3333 3344444433322 12 2223235688999999655555 4456788999998764322 2
Q ss_pred ecccccceeeEEEEEeCCCCceEEEeec--CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCE
Q 015371 78 DIETKALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQE 155 (408)
Q Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (408)
... ..-.....|++.|.+..|..+.. .+.|...+++......+.... -.....|++++++..
T Consensus 121 l~~--~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~--------------~~~P~Glald~~~~~ 184 (619)
T 3s94_A 121 LFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE--------------IYWPNGLTLDYEEQK 184 (619)
T ss_dssp EEC--SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS--------------CSSEEEEEEETTTTE
T ss_pred EEe--CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC--------------CCCCcEEEEEccCCE
Confidence 221 11124678999997666665543 457777777654432222111 114788999997777
Q ss_pred EEEEec-CCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 156 LVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 156 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
|+.+.. .+.|...|+..........+.......|++. .+ .++++-..++.|...|..
T Consensus 185 LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~-~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 185 LYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-ED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEEEETTTCCEEEESSSCCEEC---------CCCEEES-SS-EEEEECTTTCSEEEEESS
T ss_pred EEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe-CC-EEEEecCCCCEEEEEECC
Confidence 776654 5789999986544333222222334577776 43 566666677888888854
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.21 E-value=0.00086 Score=54.56 Aligned_cols=161 Identities=9% Similarity=0.092 Sum_probs=105.3
Q ss_pred EEEEEeCCCCceEEEee-cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEE---cCCCCEEEEEec--
Q 015371 88 ITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKF---STDGQELVAAGS-- 161 (408)
Q Consensus 88 v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~-- 161 (408)
..+++|.+....+..++ ..+.|..|+...+..... .+.... . . ......+..|.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s---~--~-g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS---S--N-GDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC---C--S-SCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc---c--c-CCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 44578988655565555 789999999875543322 221100 0 0 001123678999 688777665432
Q ss_pred -----------CCeEEEEECC---CCcceeeec--C-----------cCCCceEEEEecCCCCEEEEecCC-CeEEEEec
Q 015371 162 -----------DNFIYVYDLQ---ANKCSLRIP--A-----------HKSDVNTVCFADETGHLIFSGSDD-SLCKVWDR 213 (408)
Q Consensus 162 -----------dg~i~i~d~~---~~~~~~~~~--~-----------~~~~v~~l~~~~~~~~~l~~~~~d-g~i~iwd~ 213 (408)
+..|..+|+. +++.+.... . -......++.. ++++..++++.. +.|...+.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEEEeC
Confidence 6789999998 777665442 1 11247889998 889999988888 88777774
Q ss_pred cccccCCccceeee------cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 214 RCFISKGRANGVLM------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 214 ~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
. ++....+. ......+.|+++|+|+.|++...+|.+..+|++.
T Consensus 167 d-----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 D-----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp T-----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred C-----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3 22222221 1122467999999999888887799999999874
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.19 E-value=0.0012 Score=55.40 Aligned_cols=237 Identities=8% Similarity=-0.005 Sum_probs=116.3
Q ss_pred cceeeEecCCccEEEeecCceEEEEEEecCceee------ecccCceeEEEEcCC---CCeEEEE-eCC-----CcEEEE
Q 015371 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKV------DGMNSRVYTSQFSND---GSFFVAA-SQE-----SNIKVY 67 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l------~~h~~~v~~~~~s~~---~~~l~t~-~~d-----g~i~iw 67 (408)
..+.++|.|||+++.++....+..+- ......+ .........|+|+|+ +..|..+ ... ..|..+
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 35789999999988877665554443 2221111 122456889999998 4455444 322 568888
Q ss_pred EcCCCe-----eEEEeccc-ccceeeEEEEEeCCCCceEEEeecC-------------cEEEEEECCCCceeeeeeeee-
Q 015371 68 NVDKNW-----KIQKDIET-KALRWTITDTSLSPDQRFLVYASIC-------------AIVNIVDVGSSARESLANVTI- 127 (408)
Q Consensus 68 ~~~~~~-----~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~~w~~~~~~~~~~~~~~~- 127 (408)
+...+. .+...... .........++|.|||.+.++.+.. |.|.-++.+.. ......+..
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~~~ 189 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFLGR 189 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTTTC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCcccCC
Confidence 876431 11111110 1111134679999999766654321 45555554321 000000000
Q ss_pred --eeeeeeecCCCCCccceEEEEEcC-CCCEEEEEec-CCeE------EEEECCCCc------------------ceeee
Q 015371 128 --HKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGS-DNFI------YVYDLQANK------------------CSLRI 179 (408)
Q Consensus 128 --~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i------~i~d~~~~~------------------~~~~~ 179 (408)
.....+.. ++ .....++|+| ++. |+++.. ...+ .+.-+..+. +...+
T Consensus 190 ~~~~~~i~a~---G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 190 RGARPEVYSL---GH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTSCTTEEEE---CC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCccEEEE---cC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 00000000 00 1256788999 555 444433 2221 122222222 11122
Q ss_pred cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC--CccceeeecccCCeEEEEecCCCCeEEEee
Q 015371 180 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK--GRANGVLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 180 ~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
. +......++|. ++.++++....+.|...++...... ......+......+..+++.|||.++++..
T Consensus 265 ~-~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 P-QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp T-TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred C-CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2 22345677874 5677777667778888776421100 000122222235788999999998666643
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.17 E-value=0.0038 Score=56.70 Aligned_cols=205 Identities=10% Similarity=-0.024 Sum_probs=119.2
Q ss_pred ccCceeEEEEcCCCCeEEEEe-CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCC
Q 015371 39 MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGS 116 (408)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~ 116 (408)
.-..+..++|++.+..|..+. ..+.|..++++............ ......+++.+.+..|+.+ ...+.|.+.++..
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~--~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG--LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC--CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 345578999999766666554 46778888887542212222211 1257889999866655544 4678999999976
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCceEEEEecC
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 194 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~ 194 (408)
.....+.. .. -.....|++.|.+.+|+.+.. .+.|...++............-.....|++.+.
T Consensus 116 ~~~~~l~~-~~-------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~ 181 (619)
T 3s94_A 116 SLRKVLFW-QE-------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE 181 (619)
T ss_dssp CSCEEEEC-SS-------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred CCEEEEEe-CC-------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEcc
Confidence 54332221 00 113668999997666666653 467887887644333333333456789999955
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcC
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 264 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 264 (408)
++.+.++-...+.|..+|+.. ........+......++++..+ ..+++-...+.|...|..++..
T Consensus 182 ~~~LY~aD~~~~~I~~~~~dG----~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLDG----TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TTEEEEEETTTCCEEEESSSC----CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCEEEEEeCCCCeEEEecCCC----CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 566666666778899998741 1111111112222346666654 4555555677888888876543
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.15 E-value=0.0014 Score=53.72 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCceEEEee-cC-----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-----Ce
Q 015371 96 DQRFLVYAS-IC-----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NF 164 (408)
Q Consensus 96 ~~~~l~~~~-~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~ 164 (408)
++..++.|+ .+ ..+.+||..+.+-......+.... ....+. .++..++.|+.+ ..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~~~~~~--~~~~l~v~GG~~~~~~~~~ 79 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR------------YVASVS--LHDRIYVIGGYDGRSRLSS 79 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB------------SCEEEE--ETTEEEEECCBCSSCBCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc------------cccEEE--ECCEEEEEcCCCCCccCce
Confidence 455666666 32 357888887765433322211110 111222 256677777754 46
Q ss_pred EEEEECCCCc---ceee--ecCcCCCceEEEEecCCCCEEEEecCCC-----eEEEEeccccccCCccceeeecccCCeE
Q 015371 165 IYVYDLQANK---CSLR--IPAHKSDVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKGRANGVLMGHLEGIT 234 (408)
Q Consensus 165 i~i~d~~~~~---~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 234 (408)
+.+||..+.+ -... +..... -.+++. .++.+++.|+.++ .+.+||+.. .....+..+......-.
T Consensus 80 ~~~~d~~~~~~~~W~~~~~~p~~r~-~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 80 VECLDYTADEDGVWYSVAPMNVRRG-LAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQTAREGAG 154 (301)
T ss_dssp EEEEETTCCTTCCCEEECCCSSCCB-SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECSSCCBSCE
T ss_pred EEEEECCCCCCCeeEECCCCCCCcc-ceeEEE--ECCEEEEEcccCCCcccceEEEEcCCC--CeEEECCCCCCCcccce
Confidence 8999998766 3222 221111 122333 2567777776543 577888641 11111111111111112
Q ss_pred EEEecCCCCeEEEeecC-----CeEEEEeCCC
Q 015371 235 FIDSRRDGRYFISNGKD-----QTTKLWDIRK 261 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 261 (408)
.+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 155 ~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 155 LVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 2222 56777777654 3477777765
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.12 E-value=0.0022 Score=52.68 Aligned_cols=192 Identities=13% Similarity=0.207 Sum_probs=111.2
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCC----CCce--EEEee--c--CcEEEEEECC--CCc
Q 015371 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP----DQRF--LVYAS--I--CAIVNIVDVG--SSA 118 (408)
Q Consensus 51 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~~~--~--dg~i~~w~~~--~~~ 118 (408)
...+++.....+-+.+||+ +++.++.... + .++.+..-| .++. |+.++ . +++|++|++. +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g---~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--G---KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--S---CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--C---CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455666667788999999 6656655422 1 344444433 2332 33333 3 5789999874 333
Q ss_pred eeeeeee--eeeeeeeeecCCCCCccceEEEEE--cCC-CC-EEEEEecCCeEEEEECC-------CCcceeeecCcCCC
Q 015371 119 RESLANV--TIHKGLDFSADGDEDEFGIFSVKF--STD-GQ-ELVAAGSDNFIYVYDLQ-------ANKCSLRIPAHKSD 185 (408)
Q Consensus 119 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~ 185 (408)
....... +.... ...+..+++ ++. ++ ++++...+|.+..|++. +.+.+.++.. .+.
T Consensus 113 l~~i~~~~~pv~t~----------~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq 181 (355)
T 3amr_A 113 LQSMTDPDHPIATA----------INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQ 181 (355)
T ss_dssp EEECSCTTSCEECC----------CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSC
T ss_pred eeeccccccCcCCC----------CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCC
Confidence 2222110 00000 013566666 664 43 68888889999999883 2344555653 457
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEecccccc-CCccceeee-cc-cCCeEEEEe--cCCCC-eEEEee-cCCeEEEEe
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLM-GH-LEGITFIDS--RRDGR-YFISNG-KDQTTKLWD 258 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~-~~~i~~~~~--~~~~~-~l~~~~-~d~~i~iwd 258 (408)
+..+... +....|+.+-++.-|..++.+.... ....+.... ++ ...+..|++ .++++ +|++++ .++...+||
T Consensus 182 ~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 182 TEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred cceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 8888888 7777888898886665555431110 122333321 22 246788887 45555 566555 577899999
Q ss_pred CC
Q 015371 259 IR 260 (408)
Q Consensus 259 ~~ 260 (408)
.+
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.10 E-value=2.2e-05 Score=72.35 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=114.8
Q ss_pred CceeEEEEcCCCCeEEEE-eCCCcEEEEEcCCC---eeEEEecccccceeeEEEEEeCCCCceEE-EeecCcEEEEEECC
Q 015371 41 SRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVG 115 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~ 115 (408)
..+..++|++.+..|+.+ ...+.|+.+++... ........ .. ......|++.+.+..|+ +-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-SC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-CC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 457789999877666655 34578999988751 11111111 11 11345678886554444 44456789999887
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCceEEEEec
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 193 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 193 (408)
......+.... ......+++.|.+.+|+.+.. .+.|.++++........+...-...+.|+++|
T Consensus 484 g~~~~~l~~~~--------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~ 549 (699)
T 1n7d_A 484 GVKRKTLFREQ--------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 549 (699)
T ss_dssp SCCEEEECCCS--------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECT
T ss_pred CCceEEEEeCC--------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEec
Confidence 65432221110 013567889987666666543 26788887754332222222234567899995
Q ss_pred CCCCEEEEecCCCeEEEEeccccccCCccceeee---cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 194 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
..+.++++-+..+.|..+++. +.....+. ........|++..+ .++++....+.|..+|..++
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSS-----SSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred cCCEEEEEecCCCeEEEEccC-----CCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 566777777778899999974 22222221 11223345555543 45566666788998887653
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.02 E-value=0.0046 Score=51.92 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=61.5
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC---CCEEEEEecC-
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSD- 162 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d- 162 (408)
....++|.|+|++++ +...|.|.+++ +++......... ..........++++|+ +..|+++...
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v---------~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSV---------YHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCC---------CCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceE---------eecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 467899999998544 56679999998 333222221110 0011225789999998 5566655442
Q ss_pred -----CeEEEEECCCCc-----ce-eeec---CcCCCceEEEEecCCCCEEEEec
Q 015371 163 -----NFIYVYDLQANK-----CS-LRIP---AHKSDVNTVCFADETGHLIFSGS 203 (408)
Q Consensus 163 -----g~i~i~d~~~~~-----~~-~~~~---~~~~~v~~l~~~~~~~~~l~~~~ 203 (408)
+.|..++...+. .+ ..+. ........|+|. +++.+.++.+
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 678888876432 11 1132 111234689999 7887766643
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.02 E-value=0.0026 Score=52.10 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=92.0
Q ss_pred CCCeEEEEe-CC-----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-----cEEEEEECCCCc-
Q 015371 51 DGSFFVAAS-QE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSA- 118 (408)
Q Consensus 51 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~- 118 (408)
++.+++.|+ .+ ..+.+||..++.-.. .............+. .++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445566665 22 368889887763221 111111111111222 256777777754 358889988766
Q ss_pred --eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-----CeEEEEECCCCcceeeecCcCC-CceEEE
Q 015371 119 --RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLRIPAHKS-DVNTVC 190 (408)
Q Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~v~~l~ 190 (408)
-........... ....+.+ +++.++.|+.+ ..+.+||..+.+-...-..... .-.+++
T Consensus 91 ~~W~~~~~~p~~r~------------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 156 (301)
T 2vpj_A 91 GVWYSVAPMNVRRG------------LAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV 156 (301)
T ss_dssp CCCEEECCCSSCCB------------SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred CeeEECCCCCCCcc------------ceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE
Confidence 333222111110 1122222 56777777643 4688999887653322111111 112233
Q ss_pred EecCCCCEEEEecCC-----CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-----CeEEEEeCC
Q 015371 191 FADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIR 260 (408)
Q Consensus 191 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 260 (408)
. .++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 157 ~--~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 157 V--ASGVIYCLGGYDGLNILNSVEKYDPHT--GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp E--ETTEEEEECCBCSSCBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred E--ECCEEEEECCCCCCcccceEEEEeCCC--CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC
Confidence 3 256777777764 3578888641 111111111111111122222 56777777764 357888876
Q ss_pred C
Q 015371 261 K 261 (408)
Q Consensus 261 ~ 261 (408)
+
T Consensus 231 ~ 231 (301)
T 2vpj_A 231 T 231 (301)
T ss_dssp T
T ss_pred C
Confidence 5
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.98 E-value=0.0046 Score=50.65 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=35.4
Q ss_pred CCcEEEEeeCC-----CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCC-----cEEEEeeCCC
Q 015371 323 AQKYIYTGSSD-----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC-----NIVRWEIPGI 386 (408)
Q Consensus 323 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~~~~~ 386 (408)
++++++.|+.+ ..+.+||..+.+-...-.........-+...++++++.|+.++ .+.+||+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 46777777654 3689999977643322111111111112223567777777653 4888887653
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.92 E-value=0.012 Score=53.51 Aligned_cols=228 Identities=9% Similarity=-0.022 Sum_probs=134.7
Q ss_pred eEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCccee
Q 015371 99 FLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSL 177 (408)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~ 177 (408)
+|+.+ ....|+..++++........+.... .+..++|++.+..|+.+. .++.|+.+++.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~-------------~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~ 73 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVK-------------EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH 73 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCS-------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCC-------------ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE
Confidence 44444 4678999999865432222221111 377899999766666554 47899999987654443
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceee-ecccCCeEEEEecCCCCeEEEee--cCCeE
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG--KDQTT 254 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~--~d~~i 254 (408)
.+.........|++.+..++++++-...+.|.+.++. +.....+ ...-.....+++.|....|.... ..+.|
T Consensus 74 v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 74 VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 3433334678899985567777777778899999974 2222222 23345678999998655554443 24567
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CC
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SD 333 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d 333 (408)
...++.... ...+... . .....+++++++..|+.+. ..
T Consensus 149 ~r~~~dG~~-----------------------------------~~~l~~~--~----~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 149 DRAAMDGSE-----------------------------------RTTLVPN--V----GRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EEEETTSCS-----------------------------------CEEEECS--C----SSEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCc-----------------------------------eEEEECC--C----CCcceEEEccccCEEEEEECCC
Confidence 777765411 1111110 0 1122335666555555554 46
Q ss_pred CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 334 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
+.|..+|+..... ..+...-.....+++.. +.++++-...+.|...|..+++.
T Consensus 188 ~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 188 NLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 7899999865433 33333334456788765 44555555578888888665543
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.91 E-value=0.0063 Score=49.85 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=90.0
Q ss_pred CCeEEEEeCC----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-----cEEEEEECCCCceeee
Q 015371 52 GSFFVAASQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESL 122 (408)
Q Consensus 52 ~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~ 122 (408)
+.+++.|+.+ ..+..||..+..-. ...........-..+.+ ++..++.|+.+ ..+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWH-QVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEe-EcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555533 35788888776322 21111111111111222 67777777754 3578888887764433
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC-----eEEEEECCCCcceeeecCc-CCCceEEEEecCCC
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRIPAH-KSDVNTVCFADETG 196 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~~~~~ 196 (408)
........ .-..+.+ +++.++.|+.++ .+.+||+.+.+-...-... ...-.+++.. ++
T Consensus 93 ~~~p~~r~------------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 156 (302)
T 2xn4_A 93 ANMRDRRS------------TLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG 156 (302)
T ss_dssp CCCSSCCB------------SCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred CCCCcccc------------ceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC
Confidence 32221111 1122222 567777777553 5888998876533221111 1111223332 56
Q ss_pred CEEEEecCC-------CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC-----eEEEEeCCC
Q 015371 197 HLIFSGSDD-------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRK 261 (408)
Q Consensus 197 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~ 261 (408)
.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATT--NEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCC--CcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 677777653 3478888641 111111111111111122222 567777777643 577888765
No 309
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.90 E-value=0.0066 Score=49.92 Aligned_cols=145 Identities=11% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCceEEEeecC----cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec----C-----
Q 015371 96 DQRFLVYASIC----AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----D----- 162 (408)
Q Consensus 96 ~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d----- 162 (408)
++..++.|+.+ ..+.+||..+.+-......+.... .- +++. -++..++.|+. +
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~~-~~~~-~~~~lyv~GG~~~~~~~~~~~ 89 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS------------GL-AGCV-VGGLLYAVGGRNNSPDGNTDS 89 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB------------SC-EEEE-ETTEEEEECCEEEETTEEEEC
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc------------cc-eEEE-ECCEEEEECCCcCCCCCCeec
Confidence 56666666632 357888887776543322211110 11 1222 25666777765 2
Q ss_pred CeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCC-----CeEEEEeccccccCCccceeeecccCCeEE
Q 015371 163 NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
..+.+||..+.+-... +...... .+++. -++.+++.|+.+ ..+.+||+.. .....+..+......-..
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNR-IGVGV--IDGHIYAVGGSHGCIHHNSVERYEPER--DEWHLVAPMLTRRIGVGV 164 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBT-CEEEE--ETTEEEEECCEETTEECCCEEEEETTT--TEEEECCCCSSCCBSCEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccc-cEEEE--ECCEEEEEcCCCCCcccccEEEECCCC--CeEeECCCCCccccceEE
Confidence 4688999887653322 1111111 22333 256777777654 3577888641 111111111111111122
Q ss_pred EEecCCCCeEEEeecC-----CeEEEEeCCC
Q 015371 236 IDSRRDGRYFISNGKD-----QTTKLWDIRK 261 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 261 (408)
+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 165 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 165 AVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 222 56777777654 3477777765
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.88 E-value=0.024 Score=55.46 Aligned_cols=193 Identities=11% Similarity=0.030 Sum_probs=101.4
Q ss_pred cCceeEEEEcCC------CCeEEEEeC-CCcEEEEEcCCCeeEEEecccc-cceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 40 NSRVYTSQFSND------GSFFVAASQ-ESNIKVYNVDKNWKIQKDIETK-ALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 40 ~~~v~~~~~s~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
...|.|+++.|. ++++|.|.. |++++|+++++.+.+....... .....|.-+.+ ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence 568999999863 478999986 9999999998765443322211 11123333334 34567888999998876
Q ss_pred EECC--CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEE
Q 015371 112 VDVG--SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 189 (408)
Q Consensus 112 w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l 189 (408)
+.++ ++........... ..++.-..+...+..-+.+..+....++.-+ ++.... .-....+..+
T Consensus 632 ~~~d~~tg~l~d~r~~~LG------------~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~ 697 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLG------------TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYM 697 (1158)
T ss_dssp EEECTTTCCEEEEEEEECC------------SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEE
T ss_pred EEEcCCCCccccceeEEcC------------CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceE
Confidence 6654 3333211111110 1134444444444333333334544455433 322211 1122234444
Q ss_pred -EEecCC-CCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC
Q 015371 190 -CFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 251 (408)
Q Consensus 190 -~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 251 (408)
.|+... .+-++..+ ++.++|..+... ..-....+ .-...+..++++|+.+.++.+..+
T Consensus 698 ~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 698 CPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTV-PLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp EEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred eccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEe
Confidence 344211 23444444 455999887521 11222222 234678899999988877766543
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.84 E-value=0.0084 Score=49.21 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=54.2
Q ss_pred ceEEEeec--CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC----CeEEEEECC
Q 015371 98 RFLVYASI--CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQ 171 (408)
Q Consensus 98 ~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~ 171 (408)
..++.|+. ...+.+||..+.+-......+.... .-..+. -++..++.|+.+ ..+.+||..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~ 78 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR------------DAACVF--WDNVVYILGGSQLFPIKRMDCYNVV 78 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB------------SCEEEE--ETTEEEEECCBSSSBCCEEEEEETT
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccc------------eeEEEE--ECCEEEEEeCCCCCCcceEEEEeCC
Confidence 34555554 3468889988776543332221111 122222 266677777754 678999998
Q ss_pred CCcceeeecCcCCCc-eEEEEecCCCCEEEEecCC------CeEEEEecc
Q 015371 172 ANKCSLRIPAHKSDV-NTVCFADETGHLIFSGSDD------SLCKVWDRR 214 (408)
Q Consensus 172 ~~~~~~~~~~~~~~v-~~l~~~~~~~~~l~~~~~d------g~i~iwd~~ 214 (408)
+.+-...-....... .+++. .++.+++.|+.+ ..+.+||+.
T Consensus 79 ~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 79 KDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 775433211111111 22222 356777777765 458888864
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.81 E-value=0.0034 Score=61.09 Aligned_cols=269 Identities=7% Similarity=0.099 Sum_probs=153.0
Q ss_pred CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCC
Q 015371 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDED 140 (408)
Q Consensus 61 dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (408)
..+|.|-|+.++..+.+... . --+.-.+|..+.||.-. ..++.|+|+++........+ ..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi--~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~--~e----------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TD----------- 106 (1630)
T ss_pred CceEEEEECCCCCCcccccc--c----chhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc--CC-----------
Confidence 34788888887654422111 1 11234678888777654 78999999988765333222 22
Q ss_pred ccceEEEEEcCCCCEEEEEecCCeEEEEECCC-CcceeeecCc----CCCceEEEEecCCCCEEEEec-------CCCeE
Q 015371 141 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSLC 208 (408)
Q Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~~l~~~~-------~dg~i 208 (408)
+|..=.|-.+.. |+..+ +..|+.|++.. ..+...+..| ...|..-..+ ++.++++..+ -.|.+
T Consensus 107 --~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 107 --DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred --CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCccccee
Confidence 366667765554 44333 57799999964 3444444444 3456666666 6667666432 35889
Q ss_pred EEEeccccccCCccceeeecccCCeEEEEec--CC-CCeEEEeec---CCeEEEEeCCCC-cCcccccccccccccccee
Q 015371 209 KVWDRRCFISKGRANGVLMGHLEGITFIDSR--RD-GRYFISNGK---DQTTKLWDIRKM-SSNTTDNSRLRDYDWDYRW 281 (408)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 281 (408)
.+|.. ..+..+.+.||......+... +. ...++.+.. .+.++|.++... ........
T Consensus 182 QLyS~-----er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k----------- 245 (1630)
T 1xi4_A 182 QLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK----------- 245 (1630)
T ss_pred eeeec-----ccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc-----------
Confidence 99986 445556677777666555443 11 223333222 368999888653 11111000
Q ss_pred ecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCceeEEEccCCCCeeeee
Q 015371 282 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 361 (408)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (408)
+.+..+-.. ........++..|+.-..+..-+.-|.|++||+.++.++..-+-...+|...+
T Consensus 246 ---------------k~~~~~~~~---~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~ 307 (1630)
T 1xi4_A 246 ---------------KAVDVFFPP---EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 307 (1630)
T ss_pred ---------------ccccccCCc---ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence 000000000 00111122234555567788888999999999999998876665556665555
Q ss_pred EeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 362 WHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 362 ~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
-+....-++.....|.|.--.++...-
T Consensus 308 ~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 308 PHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred cCCCCCceEEEcCCceEEEEEEccchh
Confidence 544434455555777776666655433
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.81 E-value=0.0097 Score=48.89 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=92.4
Q ss_pred CCCeEEEEeCC----CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec----C-----cEEEEEECCCC
Q 015371 51 DGSFFVAASQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----C-----AIVNIVDVGSS 117 (408)
Q Consensus 51 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~~w~~~~~ 117 (408)
++.+++.|+.+ ..+.+||..+..-.. ..........-..+.+ ++..++.|+. + ..+.+||..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 56667777632 368889987763221 1111111111111222 6677777765 2 35778888776
Q ss_pred ceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-----CeEEEEECCCCcceee--ecCcCCCceEEE
Q 015371 118 ARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLR--IPAHKSDVNTVC 190 (408)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~l~ 190 (408)
+-........... ....+.+ +++.++.|+.+ ..+.+||..+.+-... +...... .+++
T Consensus 101 ~W~~~~~~p~~r~------------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~ 165 (308)
T 1zgk_A 101 QWSPCAPMSVPRN------------RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVA 165 (308)
T ss_dssp EEEECCCCSSCCB------------TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred eEeECCCCCcCcc------------ccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEE
Confidence 5443322211110 1222222 66777776643 4688999887653322 1111111 2233
Q ss_pred EecCCCCEEEEecCC-----CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-----CeEEEEeCC
Q 015371 191 FADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIR 260 (408)
Q Consensus 191 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 260 (408)
.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 166 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 166 VL--NRLLYAVGGFDGTNRLNSAECYYPER--NEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EE--CCEEEEEeCCCCCCcCceEEEEeCCC--CeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 32 56777777764 3578888641 111111111111111222223 56777777764 457888876
Q ss_pred C
Q 015371 261 K 261 (408)
Q Consensus 261 ~ 261 (408)
+
T Consensus 240 ~ 240 (308)
T 1zgk_A 240 T 240 (308)
T ss_dssp T
T ss_pred C
Confidence 5
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.72 E-value=0.0061 Score=51.29 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=95.0
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcCCCeeEEEeccccc--ceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeee--
Q 015371 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA--LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA-- 123 (408)
Q Consensus 48 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-- 123 (408)
...+|..++.+- ++.||.-++..... .+.+.... .-..|..+..+|+|++||..+ +..|.|-.+..+......
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~-Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSL-YHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSS-CEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCc-ceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 344566666654 45788777764422 22222221 111477799999999999876 568889888743211110
Q ss_pred ---eeeeeeeeeeecCCCCCccceEEEEEcC---CCCEEEEEecCCeEEEEECCCCc--ceeeec---------CcCCCc
Q 015371 124 ---NVTIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQANK--CSLRIP---------AHKSDV 186 (408)
Q Consensus 124 ---~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~---------~~~~~v 186 (408)
.++ .+.............+|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|
T Consensus 105 ~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 105 IQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred cccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 000 011111111111345799999999 45689999999999999997522 12 221 223678
Q ss_pred eEEEEecCCCCEEEEe--cCCCeEEEE
Q 015371 187 NTVCFADETGHLIFSG--SDDSLCKVW 211 (408)
Q Consensus 187 ~~l~~~~~~~~~l~~~--~~dg~i~iw 211 (408)
.+++|. .++-.|... ++.|.|+-.
T Consensus 183 ~S~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEc-CCCcEEEEEecCCCCCEEEE
Confidence 899999 677767764 477887654
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.71 E-value=0.015 Score=48.35 Aligned_cols=206 Identities=10% Similarity=0.106 Sum_probs=112.0
Q ss_pred eeeecccCceeEEEEcCCCCeEEEEe------------CCCcEEEEEcCCCe-eEEEeccc----ccceeeEEEEEeCC-
Q 015371 34 WKVDGMNSRVYTSQFSNDGSFFVAAS------------QESNIKVYNVDKNW-KIQKDIET----KALRWTITDTSLSP- 95 (408)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~------------~dg~i~iw~~~~~~-~~~~~~~~----~~~~~~v~~~~~~~- 95 (408)
..+.+-....-.++..|+|..+++++ .+|.|.++|.++.. ........ .........+.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 33434233455677888886555542 68999999987421 12221111 11223466666655
Q ss_pred -CCc-eEEEee-c--CcEEEEEECCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe--------
Q 015371 96 -DQR-FLVYAS-I--CAIVNIVDVGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-------- 160 (408)
Q Consensus 96 -~~~-~l~~~~-~--dg~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------- 160 (408)
++. +|+++. . +..+.+|+++... ......+.. ..-...+++.+.++|.+.++..
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-----------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-----------KLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-----------TTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-----------CCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 343 444442 2 4678888776542 222222111 1122588999999998666543
Q ss_pred ---------cCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEe-cCCCeEEEEeccccccCCcc--ceeeec
Q 015371 161 ---------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRA--NGVLMG 228 (408)
Q Consensus 161 ---------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~~ 228 (408)
..|.|+.+|. ++. ..+...-...+.++|+ |+++.++.+ +..+.|..|++.. .+.. ...+ .
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~---~g~l~~~~~~-~ 263 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHA---NWTLTPLRVL-S 263 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT---TSCEEEEEEE-E
T ss_pred ccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECC---CCcEecCEEE-e
Confidence 1245666654 332 2232233557899999 777655554 5678999999752 1211 1222 2
Q ss_pred ccCCeEEEEecC-CCCeEEEeecC-CeEEEEe
Q 015371 229 HLEGITFIDSRR-DGRYFISNGKD-QTTKLWD 258 (408)
Q Consensus 229 ~~~~i~~~~~~~-~~~~l~~~~~d-~~i~iwd 258 (408)
..+..-.+++.+ +|++.+++..+ +.|..|+
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 245567788888 58877655534 2344343
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.65 E-value=0.02 Score=48.02 Aligned_cols=212 Identities=8% Similarity=0.009 Sum_probs=106.3
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCe-eEEEecccccceeeEEEEEeCCC---CceEEEeec----C----c
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPD---QRFLVYASI----C----A 107 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d----g 107 (408)
-.....++|.|||+++++ ..+|.|++++ .++. .+...............|+++|+ +..|.++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345788999999985554 5668999987 3443 11111111111235889999997 555554443 2 5
Q ss_pred EEEEEECCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-------------CCeEEEEECCC
Q 015371 108 IVNIVDVGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-------------DNFIYVYDLQA 172 (408)
Q Consensus 108 ~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~ 172 (408)
.|..|+..... ......+ ... + +....| ....++|.|||.+.++.+. .|.|..++...
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l--~~~--~-~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTL--IDG--I-PGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEE--EEE--E-ECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred EEEEEEECCCCcCcCccEEE--EEc--C-CCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 67777766541 1101100 000 0 111122 2467999999986665432 24666666542
Q ss_pred Cc-------ceeee-cCcCCCceEEEEecCCCCEEEEecCCC---eEEEEeccccc----------c--CCccceeeecc
Q 015371 173 NK-------CSLRI-PAHKSDVNTVCFADETGHLIFSGSDDS---LCKVWDRRCFI----------S--KGRANGVLMGH 229 (408)
Q Consensus 173 ~~-------~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg---~i~iwd~~~~~----------~--~~~~~~~~~~~ 229 (408)
.- ....+ .++. ....++|.|.++.++++-.... .|.+...-... . ...+...+...
T Consensus 179 ~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 179 RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 20 01111 2232 3468999943666665533322 23333210000 0 00122222112
Q ss_pred cCCeEEEEec-------CCCCeEEEeecCCeEEEEeCCC
Q 015371 230 LEGITFIDSR-------RDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 230 ~~~i~~~~~~-------~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
......+.+. .+|.++++.-..+.|...++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 2456777773 4566666655566777777654
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.64 E-value=0.018 Score=47.40 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=89.6
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec----C-------cEEEEEECCCCceeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----C-------AIVNIVDVGSSARESL 122 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~~w~~~~~~~~~~ 122 (408)
+++.|+ ..+.+||..+++-.......... .........++..++.|+. + ..+..||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVP--KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSC--SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCC--ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 46899998887532221111111 1112222347777777773 1 1377888877664333
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC--------CeEEEEECCCCcceeeecCcCCC-ceEEEEec
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------NFIYVYDLQANKCSLRIPAHKSD-VNTVCFAD 193 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~ 193 (408)
...+.... .-..+.+ +++.++.|+.+ ..+.+||..+.+-...-...... -.+++.
T Consensus 83 ~~~p~~r~------------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 146 (315)
T 4asc_A 83 PPLPSPRC------------LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-- 146 (315)
T ss_dssp CCBSSCEE------------SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--
T ss_pred CCCCcchh------------ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--
Confidence 22221111 1112222 56666777642 46899999876532221111111 122233
Q ss_pred CCCCEEEEecC-C-----CeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCC-----eEEEEeCCC
Q 015371 194 ETGHLIFSGSD-D-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRK 261 (408)
Q Consensus 194 ~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~ 261 (408)
.++.+++.|+. + ..+.+||+.. ..-..+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKK--FEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCC--CeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 35667777776 2 3588888641 111111111111111122222 567777777654 477788765
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.63 E-value=0.0079 Score=50.65 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=81.1
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEE-----------Eecccc----cceeeEEEEEeCCC---CceEEEe
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ-----------KDIETK----ALRWTITDTSLSPD---QRFLVYA 103 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~-----------~~~~~~----~~~~~v~~~~~~~~---~~~l~~~ 103 (408)
.|..+..||+|++||..+.. .|.|-.+..+.... ...... ....+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 68889999999999998754 79998887331100 011111 12457999999994 5689999
Q ss_pred ecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe--cCCeEEEEE
Q 015371 104 SICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYD 169 (408)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d 169 (408)
..|+.|++||+......+. .+... ...|.. +.....|.+++|.+++-.|.+.+ ..|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~-~~~fg~--d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKP-NNSFGL--DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCC-CSEEES--CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhcc-ccccCC--CcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999999999986433222 22111 111221 12224699999999887777755 778887654
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.63 E-value=0.019 Score=47.32 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=67.2
Q ss_pred EEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec----C-------CeEEEE
Q 015371 100 LVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----D-------NFIYVY 168 (408)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d-------g~i~i~ 168 (408)
++.|+ ..+..||..+.+-.. ...+.... .........++..++.|+. + ..+.+|
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 72 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVP------------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQF 72 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSC------------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCC------------ccceEEEEECCEEEEEcCcccCCCCCccccccceEEe
Confidence 34444 578899998876432 11111000 1222223346777777773 1 237889
Q ss_pred ECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCC--------CeEEEEeccccccCCccceeeecccCCeEEEEe
Q 015371 169 DLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 238 (408)
Q Consensus 169 d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (408)
|..+++-... +...... .+++.. ++.+++.|+.+ ..+.+||+.. ..-..+..+.........+.
T Consensus 73 d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~- 146 (315)
T 4asc_A 73 DHLDSEWLGMPPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS--FKWGESDPLPYVVYGHTVLS- 146 (315)
T ss_dssp ETTTTEEEECCCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEE-
T ss_pred cCCCCeEEECCCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCC--CcEeECCCCCCcccceeEEE-
Confidence 9887653221 1111111 123332 56777777742 3578888641 11111111111111112222
Q ss_pred cCCCCeEEEeec-C-----CeEEEEeCCC
Q 015371 239 RRDGRYFISNGK-D-----QTTKLWDIRK 261 (408)
Q Consensus 239 ~~~~~~l~~~~~-d-----~~i~iwd~~~ 261 (408)
-++++++.|+. + ..+.+||+.+
T Consensus 147 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 147 -HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp -ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred -ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 35667777776 2 3577787765
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.62 E-value=0.02 Score=47.68 Aligned_cols=189 Identities=11% Similarity=0.127 Sum_probs=101.8
Q ss_pred ceEEEEEcCCCCEEEEE------------ecCCeEEEEECCCCc-ceee--ecC-----cCCCceEEEEecC-CC--CEE
Q 015371 143 GIFSVKFSTDGQELVAA------------GSDNFIYVYDLQANK-CSLR--IPA-----HKSDVNTVCFADE-TG--HLI 199 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~------------~~dg~i~i~d~~~~~-~~~~--~~~-----~~~~v~~l~~~~~-~~--~~l 199 (408)
...++...|+|..++++ ..+|.|.++|..+.. .... +.+ .......+.+.+. ++ .++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 35567778877544444 168999999987431 1122 222 2245677777631 33 244
Q ss_pred EEecC--CCeEEEEeccccccCCccceeeecc-cCCeEEEEecCCCCeEEEeec---C--------------CeEEEEeC
Q 015371 200 FSGSD--DSLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGK---D--------------QTTKLWDI 259 (408)
Q Consensus 200 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---d--------------~~i~iwd~ 259 (408)
++-.. +.+|.+|++.........+..+.+. -...+.+.+.++|++.++... | |.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 5688898875211112222233322 235678888888886665431 1 11222211
Q ss_pred CCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEee-CCCeEEE
Q 015371 260 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYI 338 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~v 338 (408)
++ +... .........++||||++.|+.+. ..+.|+.
T Consensus 211 ------------------------------------~~-~~~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 211 ------------------------------------ND-VRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp ------------------------------------TC-CEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ------------------------------------Ce-EEEe------ecCCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 00 1110 11112234457999998777665 4688999
Q ss_pred EECCC-Cce--eEEEccCCCCeeeeeEeC-CCCeEEeecCC
Q 015371 339 YDLVS-GAQ--VAKLDFHNAPVRDCCWHP-IYPMLISSSWD 375 (408)
Q Consensus 339 wd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d 375 (408)
|++.. ++. ...+. ..+..-.+++.+ +|++.+++..+
T Consensus 248 ~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 248 YEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 99863 322 22332 245677889998 59877766543
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.58 E-value=0.022 Score=46.68 Aligned_cols=186 Identities=10% Similarity=0.099 Sum_probs=91.5
Q ss_pred CeEEEEeC--CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC----cEEEEEECCCCceeeeeeee
Q 015371 53 SFFVAASQ--ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVT 126 (408)
Q Consensus 53 ~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~ 126 (408)
.+++.|+. ...+.+||..++.-. ...........-..+.+ ++..++.|+.+ ..+.+||..+.+-......+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 356888998776322 11111111111222222 66777777754 57888998877654332222
Q ss_pred eeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC------CeEEEEECCCCcceeeecCcCC-CceEEEEecCCCCEE
Q 015371 127 IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRIPAHKS-DVNTVCFADETGHLI 199 (408)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~l 199 (408)
.... ....+.+ +++.++.|+.+ ..+.+||..+.+-...-..... .-.+++. .++.++
T Consensus 90 ~~r~------------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy 153 (306)
T 3ii7_A 90 TPRD------------SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIY 153 (306)
T ss_dssp SCCB------------SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEE
T ss_pred cccc------------ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEE
Confidence 1111 1122222 66777777754 4689999987753322111111 1122233 256677
Q ss_pred EEecC---------CCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-----CeEEEEeCCC
Q 015371 200 FSGSD---------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 261 (408)
Q Consensus 200 ~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 261 (408)
+.|+. -..+.+||+.. .....+..+......-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPAT--ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EECCCCCCCCcccccceEEEeCCCC--CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 77764 34578888641 111111111111111122222 56677777654 3477788765
No 322
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.57 E-value=0.044 Score=49.88 Aligned_cols=198 Identities=8% Similarity=-0.041 Sum_probs=121.9
Q ss_pred CceeEEEEcCCCCeEEE-EeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe-ecCcEEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVA-ASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~ 118 (408)
..+..++|++++..|.. -..++.|+.++++.... ....... ......+++.+.+..|+.+ ...+.|.+.+++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g--~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFG--LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCC--CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 46789999997655554 45678899898875422 2222211 1246678888766555544 456789999987654
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec--CCeEEEEECCCCcceeeecCcCCCceEEEEecCCC
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG 196 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 196 (408)
...+.. .. -.....+++.|....|+.+.. .+.|...++.......... .-.....|++.+..+
T Consensus 114 ~~~l~~-~~-------------l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~ 178 (628)
T 4a0p_A 114 RQVLVW-KD-------------LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKR 178 (628)
T ss_dssp CEEEEC-SS-------------CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTT
T ss_pred EEEEEe-CC-------------CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccC
Confidence 322211 11 113689999986656666653 5688888886544333333 445678999994456
Q ss_pred CEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 197 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
.+.++-...+.|..+|+.. .....+.........+++.. +.++++-...+.|...|..++
T Consensus 179 ~LY~aD~~~~~I~~~d~dG-----~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLG-----LNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEETTTTEEEEEETTS-----CSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEECCCCEEEEEcCCC-----CceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 6666666778899999752 11123333344456777764 455555555777888886554
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.49 E-value=0.036 Score=46.85 Aligned_cols=220 Identities=8% Similarity=0.063 Sum_probs=137.0
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCC
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 185 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (408)
+..|.+.|+.++......... .-+.-.+|..+.++.-. ...+.++|+++.+.+....- ..+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-----------------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~ 107 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-----------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDD 107 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-----------------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSC
T ss_pred CCeEEEEECCCCCcceecccc-----------------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCC
Confidence 347888888876543222221 33456788887776664 78999999999888777764 446
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeeccc----CCeEEEEecCCCCeEEEeec-------CCeE
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL----EGITFIDSRRDGRYFISNGK-------DQTT 254 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-------d~~i 254 (408)
|.-=.|- +.+.|+..+ +..|+-|++. ....+.+.+..|. ..|..-..+++.++++..+- .|.+
T Consensus 108 VvfWkWi--s~~~l~lVT-~taVyHWsi~---~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 108 VTFWKWI--SLNTVALVT-DNAVYHWSME---GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp CCEEEEE--ETTEEEEEC-SSEEEEEESS---SSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred ceEEEec--CCCeEEEEc-CCeeEEeccc---CCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 7777786 344555554 4579999985 2445666665543 45777778889988765442 4678
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC--
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-- 332 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-- 332 (408)
.+|..+. +.-..+++|...-..... ........+++.+..
T Consensus 182 QLYS~er-----------------------------------~~sQ~ieGhaa~F~~~~~---~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 182 QLYSVDR-----------------------------------KVSQPIEGHAASFAQFKM---EGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp EEEESTT-----------------------------------CCEEEECCSEEEEEEEEC---TTCSSEEEEEEEEECST
T ss_pred EEeeccc-----------------------------------cccchheeeeeeeEEEec---CCCCCCceEEEEEEecC
Confidence 8888876 444556666532211110 000111234444433
Q ss_pred -CCeEEEEECCCC--------ceeEEEc----cCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 333 -DNSVYIYDLVSG--------AQVAKLD----FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 333 -dg~i~vwd~~~~--------~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+.++|.++... +....+. ...+-..++..++....+..-+.-|.|++||+.++..
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 278999998532 1111111 1234455788888888888888899999999998743
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.48 E-value=0.034 Score=46.73 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=35.8
Q ss_pred CCCeEEEEeCC-CcEEEEEcCCC-eeEEEecccc-cceeeEEEEEeCCCCceEEEeec-C---------cEEEEEECCCC
Q 015371 51 DGSFFVAASQE-SNIKVYNVDKN-WKIQKDIETK-ALRWTITDTSLSPDQRFLVYASI-C---------AIVNIVDVGSS 117 (408)
Q Consensus 51 ~~~~l~t~~~d-g~i~iw~~~~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~~w~~~~~ 117 (408)
++++++.|+.+ ..+.++|..+. ..-....... .....-.++.+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666777543 46888888631 1222221111 11111222222 5677777765 2 35888888877
Q ss_pred ceee
Q 015371 118 ARES 121 (408)
Q Consensus 118 ~~~~ 121 (408)
+-..
T Consensus 97 ~W~~ 100 (357)
T 2uvk_A 97 SWVK 100 (357)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 6443
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.48 E-value=0.033 Score=46.20 Aligned_cols=236 Identities=7% Similarity=0.059 Sum_probs=117.2
Q ss_pred cceeeEecCCccEEEeec-CceEEEEEEecCce-ee-------ecccCceeEEEEcCC----CCeEEEEe--CCCcEEEE
Q 015371 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPW-KV-------DGMNSRVYTSQFSND----GSFFVAAS--QESNIKVY 67 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~-~l-------~~h~~~v~~~~~s~~----~~~l~t~~--~dg~i~iw 67 (408)
..+.++|.|||+++.+.. ...+..+-+..... .+ ....+....|+|+|+ +.+.++-+ .+..|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 457899999999888876 44444443222211 11 223566889999995 44434322 34456666
Q ss_pred EcCCC----------eeEEEec-ccccceeeEEEEEeCCCCceEEEeec-------------CcEEEEEECCCCceeeee
Q 015371 68 NVDKN----------WKIQKDI-ETKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLA 123 (408)
Q Consensus 68 ~~~~~----------~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~ 123 (408)
.+..+ +.+.... ....| .-..|.|.|||.+.++.+. .|.|.-.+.+.. ...-.
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~n 189 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPGN 189 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTTC
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCCC
Confidence 65541 1111111 11223 3567999999987776542 233333333221 00000
Q ss_pred eeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe-cCCeEEEEECCCCcc------------------eeeecCcCC
Q 015371 124 NVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKC------------------SLRIPAHKS 184 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------------~~~~~~~~~ 184 (408)
.+. ....+. .++. ....++|+|+|.+.++-. .++.=.|--+..+.. +..+..+..
T Consensus 190 Pf~--~~~i~a---~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 190 PFP--GSPVYS---YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp SST--TCCEEE---BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCC--CCeEEe---eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 000 000000 0111 256789999876444321 122222222222211 111221223
Q ss_pred CceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEee
Q 015371 185 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 249 (408)
Q Consensus 185 ~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 249 (408)
....|+|. ++.++......+.|....+.......+....+.+....+..+...|||.++++..
T Consensus 264 ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 55678886 4666766666667766665421111222233444457889999999998666543
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.46 E-value=0.037 Score=46.41 Aligned_cols=231 Identities=8% Similarity=-0.024 Sum_probs=118.3
Q ss_pred cceeeEecCCcc-EEEeecCceEEEEEEecCce-ee-------ecccCceeEEEEcCC---CCeEEEE-eC-------CC
Q 015371 3 VGREVNYSGRGR-FSAADSCHVLSRYLPVNGPW-KV-------DGMNSRVYTSQFSND---GSFFVAA-SQ-------ES 62 (408)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~-~l-------~~h~~~v~~~~~s~~---~~~l~t~-~~-------dg 62 (408)
..+.++|.|||+ ++.+.....+..+-+..... .+ ....+....++|+|+ +.+|..+ .. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 457899999999 87777655555443221110 11 122345689999996 4444443 22 23
Q ss_pred cEEEEEcCCC----eeEEEec---c---cccceeeEEEEEeCCCCceEEEeec-------------CcEEEEEECCCCc-
Q 015371 63 NIKVYNVDKN----WKIQKDI---E---TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSA- 118 (408)
Q Consensus 63 ~i~iw~~~~~----~~~~~~~---~---~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~w~~~~~~- 118 (408)
.|..|++..+ .....+. . ...| ....++|.|||.+.++.+. .|.|.-++.+..-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 5666666533 1111111 1 1122 2457999999966555433 2456666654320
Q ss_pred -----------eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC--eEEEEECCCCcc----------
Q 015371 119 -----------RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--FIYVYDLQANKC---------- 175 (408)
Q Consensus 119 -----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~---------- 175 (408)
...+.. ..+. ....++|.|+...|.++.... .=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~r-------------np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~ 242 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGIR-------------NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGI 242 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECCS-------------EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSB
T ss_pred CCCCCcCCCCCCccEEE-EcCc-------------CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCC
Confidence 000000 0111 377899999433455554321 112222221110
Q ss_pred ---------------------eeeecCcCCCceEEEEec------CCCCEEEEecCCCeEEEEeccccccCCccce--e-
Q 015371 176 ---------------------SLRIPAHKSDVNTVCFAD------ETGHLIFSGSDDSLCKVWDRRCFISKGRANG--V- 225 (408)
Q Consensus 176 ---------------------~~~~~~~~~~v~~l~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~- 225 (408)
...+. +...+..+.|.. .++.++++....+.|...++. .+.... .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~ 317 (353)
T 2g8s_A 243 NYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRI 317 (353)
T ss_dssp CTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEE
T ss_pred CCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEc
Confidence 01111 223566778862 146777777777888887764 222211 1
Q ss_pred eecccCCeEEEEecCCCCeEEEee-cCCeE
Q 015371 226 LMGHLEGITFIDSRRDGRYFISNG-KDQTT 254 (408)
Q Consensus 226 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i 254 (408)
+......+..+++.|||.++++.. .+|.|
T Consensus 318 ~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp SGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred ccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 222345789999999999666533 34433
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.46 E-value=0.033 Score=48.66 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=60.5
Q ss_pred EEEEeCCCcEEEEEcCCCeeEEEecccccc----------------------eeeE--EEEEeC---CCCceEEEee-cC
Q 015371 55 FVAASQESNIKVYNVDKNWKIQKDIETKAL----------------------RWTI--TDTSLS---PDQRFLVYAS-IC 106 (408)
Q Consensus 55 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------------~~~v--~~~~~~---~~~~~l~~~~-~d 106 (408)
+.+|+..|.|+|+-+.+.+.+..+...... .+.. ..+++. .||++|..-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678889999999999998777654322110 0000 123332 2677887765 45
Q ss_pred cEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEc--CCCCEEEEEec
Q 015371 107 AIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGS 161 (408)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~ 161 (408)
..|...++...+...+..++...+ +..++|. |+..++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~-------------~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQA-------------IHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSC-------------EEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCcC-------------cccccccccCCccEEEecce
Confidence 678888888887766666554443 7777775 57777777764
No 328
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.37 E-value=0.04 Score=44.68 Aligned_cols=201 Identities=10% Similarity=0.093 Sum_probs=122.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeee
Q 015371 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (408)
Q Consensus 45 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (408)
+.-.+|..+.+|.-. ..++.|+|+++..++....... .|.-=.|-.+. .|+..+ +..|.-|+++... .+.+.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e----~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s-~P~kv 142 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QPVKM 142 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----CEEEEEECSSS-EEEEEE-SSEEEEEESSTTC-CCEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC----ccEEEEecCCC-eEEEEc-CCcEEEEcccCCC-CCcee
Confidence 455688888888765 5789999999987776654432 57666776443 444443 4679999997632 23333
Q ss_pred eeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec-------CCeEEEEECCCCcceeeecCcCCCceEEEEe--cCC
Q 015371 125 VTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFA--DET 195 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--~~~ 195 (408)
+..+..+ ....|..-..+++.++++..+- .|.+.+|..+.+ ..+.+.+|...-..+... +..
T Consensus 143 FdR~~~L--------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 143 FDRHSSL--------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEE 213 (365)
T ss_dssp EECCGGG--------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSC
T ss_pred eecchhc--------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCC
Confidence 3333322 1235778888888887765542 478899998755 455677775543333322 111
Q ss_pred CCEEEEecC---CCeEEEEeccccc-cCCc----cceeee---cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 196 GHLIFSGSD---DSLCKVWDRRCFI-SKGR----ANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 196 ~~~l~~~~~---dg~i~iwd~~~~~-~~~~----~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
..+++.+.. .+++.+-++.... .... ....+. ...+--.++..++.-..+...+.-|.+++||+.++
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC
Confidence 223443333 2588888874220 1111 111111 11333457777877778888889999999999984
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.37 E-value=0.049 Score=45.67 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=39.0
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEE--E-ccCCCCeeeeeEeCCCCeEEeec-CCCcEEEEee
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSGAQVAK--L-DFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEI 383 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~~ 383 (408)
+|+++++.-..+.|...++..++.+.. + ......+..+++.|||.++++.. .+|. ||.+
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~--I~ri 350 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE--LLKV 350 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE--EEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE--EEEE
Confidence 477777777788888888876544332 2 22235789999999999666533 4554 4444
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.19 E-value=0.071 Score=43.92 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=85.7
Q ss_pred eEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeec----Cc-------EEEEEECCCCceeee
Q 015371 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CA-------IVNIVDVGSSARESL 122 (408)
Q Consensus 54 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~~w~~~~~~~~~~ 122 (408)
+++.|+. .+..||..+++-........... .-.+ ....++..++.|+. ++ .+..||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r-~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPR-NHSS-IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCS-SEEE-EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCc-cceE-EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 37889988774332211111111 1122 23346777777773 11 267788877654333
Q ss_pred eeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC-------CeEEEEECCCCcceee--ecCcCCCceEEEEec
Q 015371 123 ANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------NFIYVYDLQANKCSLR--IPAHKSDVNTVCFAD 193 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~ 193 (408)
...+.... ....+.+ +++.++.|+.+ ..+.+||..+.+-... +...... .+++.
T Consensus 94 ~~~p~~r~------------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-- 156 (318)
T 2woz_A 94 PPLPSARC------------LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-- 156 (318)
T ss_dssp SCBSSCBC------------SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE--
T ss_pred CCCCcccc------------ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE--
Confidence 22221110 1112222 56777777653 3588899887653322 1111111 12222
Q ss_pred CCCCEEEEecC------CCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC-----CeEEEEeCCC
Q 015371 194 ETGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 261 (408)
Q Consensus 194 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 261 (408)
.++.+++.|+. -..+.+||+.. .....+............+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKK--GDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCC--CEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 35667777764 23588888641 111111111111111122222 56777777653 2466777765
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.09 E-value=0.1 Score=43.82 Aligned_cols=52 Identities=15% Similarity=-0.023 Sum_probs=25.8
Q ss_pred eEEEEECCCCc--eeEEEccCCCCeeeeeEeCCCCeEEeecCCC------cEEEEeeCCCCC
Q 015371 335 SVYIYDLVSGA--QVAKLDFHNAPVRDCCWHPIYPMLISSSWDC------NIVRWEIPGIGE 388 (408)
Q Consensus 335 ~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg------~v~iw~~~~~~~ 388 (408)
.+.+||+.+.+ .+..+...... ..+...++++++.|+.++ .|.++++.+.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 47889987654 33333222221 222334677788887543 355567766544
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.07 E-value=0.031 Score=42.48 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=79.1
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE-----EEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECC
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI-----QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 115 (408)
..+..++|+|+|.+.++ .+|.++-.+..+.... ...+...+-. .-.++.|.|+|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 47889999999997777 5676555444331100 0000000101 1367899999988777 56888777653
Q ss_pred CCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcce------eee-cCcCCCceE
Q 015371 116 SSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS------LRI-PAHKSDVNT 188 (408)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~-~~~~~~v~~ 188 (408)
+......... ... . +..-=..+..|.+.|+|.+.++. |+.++-....++... ..+ ......-+-
T Consensus 116 ~~~~~~Wl~~-a~~---v---g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~ 186 (236)
T 1tl2_A 116 QSDTDNWIAR-ATE---V---GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKF 186 (236)
T ss_dssp CSTTCCHHHH-SEE---E---ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred cCCCCceecc-ccE---e---ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEE
Confidence 3221111000 000 0 00000148899999999866655 787655444322211 111 122223344
Q ss_pred EEEecCCCCEEEEecCCCeE
Q 015371 189 VCFADETGHLIFSGSDDSLC 208 (408)
Q Consensus 189 l~~~~~~~~~l~~~~~dg~i 208 (408)
+.|. +++.+.++. +|.+
T Consensus 187 l~f~-~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 187 LFFS-SVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEC-TTSCEEEEE--TTEE
T ss_pred EEEC-CCCcEEEEe--CCeE
Confidence 5666 777776665 6633
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.1 Score=43.10 Aligned_cols=194 Identities=9% Similarity=0.025 Sum_probs=100.2
Q ss_pred CeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEe--CC-CCceEEEe-ecCcEEEEEECCCCceeeeeeeeee
Q 015371 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--SP-DQRFLVYA-SICAIVNIVDVGSSARESLANVTIH 128 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (408)
.+++.++.||.|.-.|..+++........ ...++....- .+ ++..++.. +.||.+..++..++..+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~-- 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR-- 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc--
Confidence 46888899999999999999877776443 1112222111 11 33444443 57999999998877443221111
Q ss_pred eeeeeecCCCCCccceEE---EEE-----cCCCCEEEEEecCCeEEEEECCCCcceeeecCcC--CC-----ceEEEEe-
Q 015371 129 KGLDFSADGDEDEFGIFS---VKF-----STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK--SD-----VNTVCFA- 192 (408)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----v~~l~~~- 192 (408)
... ...++.. ... ...+..+++|+.+|.+...|+.+|+.+..+.... .. ..|....
T Consensus 87 ~lv--------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d 158 (339)
T 2be1_A 87 QLV--------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEK 158 (339)
T ss_dssp HHH--------TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------
T ss_pred cce--------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccc
Confidence 100 0001111 000 0135578999999999999999999998885321 10 0111110
Q ss_pred ---cCCCCEEEEecCCCeEEEEeccccccCCc-cceee---ecccCC--e-EEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 193 ---DETGHLIFSGSDDSLCKVWDRRCFISKGR-ANGVL---MGHLEG--I-TFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 193 ---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~---~~~~~~--i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
...+..++.+..+..+.+.+ + .++ ....+ ...... + ..-..+.|+.+ +.++.||.|.-+|..++
T Consensus 159 ~~~d~~~~~v~ig~~~y~v~~~~-~----sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 159 IKLQECENMIVIGKTIFELGIHS-Y----DGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFR 232 (339)
T ss_dssp ------CCEEEEEEEEEECEECC-T----TSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTC
T ss_pred cccccCCCeEEEecceEEEEEEC-C----CCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCC
Confidence 01235677776666666655 2 121 00011 000000 0 00001224565 44677888888888765
Q ss_pred cC
Q 015371 263 SS 264 (408)
Q Consensus 263 ~~ 264 (408)
..
T Consensus 233 ~~ 234 (339)
T 2be1_A 233 IA 234 (339)
T ss_dssp CE
T ss_pred cE
Confidence 54
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.024 Score=46.73 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=66.2
Q ss_pred CceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEE---EcCCCCEEEEE-ecCCeEEEEECCC
Q 015371 97 QRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVK---FSTDGQELVAA-GSDNFIYVYDLQA 172 (408)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~-~~dg~i~i~d~~~ 172 (408)
+..+++++.||.|.-+|..+++........... ++.... ...++..++.. +.||.|+.++..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~-------------p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~ 76 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQ-------------PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ 76 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSC-------------CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccC-------------CcEEecCCccccCCcEEEEEECCCCEEEEEECCC
Confidence 346788899999999999888765444332000 111100 00133333333 5799999999988
Q ss_pred CcceeeecC----cCCCceE---EEE-ec---CCCCEEEEecCCCeEEEEeccccccCCccceeee
Q 015371 173 NKCSLRIPA----HKSDVNT---VCF-AD---ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 227 (408)
Q Consensus 173 ~~~~~~~~~----~~~~v~~---l~~-~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (408)
|.....+.. ...++.. ... .+ ..+..+++|+.+|.+...|++ +++.+..+.
T Consensus 77 G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~----tG~~~W~~~ 138 (339)
T 2be1_A 77 GLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML----NGEIISAFG 138 (339)
T ss_dssp EEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT----TCCEEEEES
T ss_pred CcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC----CCcEEEEEe
Confidence 855443321 1122221 000 00 146688999999999999965 677766664
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.89 E-value=0.13 Score=41.89 Aligned_cols=173 Identities=10% Similarity=0.100 Sum_probs=90.9
Q ss_pred EcCCCCeEEEEe--CCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC--------------cEEEE
Q 015371 48 FSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--------------AIVNI 111 (408)
Q Consensus 48 ~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~~ 111 (408)
|++++.+++... .++.|+..+.+.. ...++.. -.+--+++++++|+.+... ..|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 345667766654 2455555554433 2222211 1123457889988877643 46777
Q ss_pred EECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe----cCCeEEEEECCCCcceeeecCcCCCce
Q 015371 112 VDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG----SDNFIYVYDLQANKCSLRIPAHKSDVN 187 (408)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~v~ 187 (408)
.++...+...+.. -....|+++++.|+-.. ....|+..++.... ...+..+..
T Consensus 93 i~~dg~~~~~l~~-------------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~--- 149 (302)
T 3s25_A 93 IKRNGHGSTVLDP-------------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL--- 149 (302)
T ss_dssp EETTSCCCEEEEC-------------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC---
T ss_pred EeCCCCcceEeec-------------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc---
Confidence 7777665433221 11235677888888775 34567777776443 344443322
Q ss_pred EEEEecCCCCEEE-EecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecC--CeEEEEeCCC
Q 015371 188 TVCFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD--QTTKLWDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~iwd~~~ 261 (408)
..++ ++++.|+ +......|...++. ... ...+.. +... ..+.|++.+|+-...+ ..|..-++..
T Consensus 150 -~~~~-~~g~~iy~t~~g~~~Iy~~~l~----g~~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 -FTCN-TSDRYFYYNNPKNGQLYRYDTA----SQS-EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp -CCSE-EETTEEEEECTTTCCEEEEETT----TTE-EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred -eEee-EECCEEEEEeCCCceEEEEECC----CCC-EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3345 3455555 44446677777753 222 222221 2222 2356888887765543 2455555544
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.87 E-value=0.14 Score=41.78 Aligned_cols=136 Identities=11% Similarity=0.173 Sum_probs=73.5
Q ss_pred CCCCceEEEee--cCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecC---------
Q 015371 94 SPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------- 162 (408)
Q Consensus 94 ~~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 162 (408)
++++..|.... .++.|...+.+......+.. -.+--+++++.+|+.+...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-------------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~ 82 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-------------------DTAMYINADKNYVYYVRNNNQKITSQTF 82 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-------------------EEEEEEEECSSEEEEEEECC------CC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC-------------------CceeeEEEcCCEEEEEECCCCcccccce
Confidence 34666776654 24566666665544322221 1123446788888877553
Q ss_pred -----CeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEEEec--CCCeEEEEeccccccCCccceeeecccCCeEE
Q 015371 163 -----NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITF 235 (408)
Q Consensus 163 -----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 235 (408)
..|+..++..++... +.. .. ...|+ ++++.|+-.. .++.-.||-+. ..+.....+..+..
T Consensus 83 ~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~---~dGs~~~~lt~~~~---- 149 (302)
T 3s25_A 83 FSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYAS-LIGNYIYYLHYDTQTATSLYRIR---IDGEEKKKIKNHYL---- 149 (302)
T ss_dssp SSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEE-EETTEEEEEEESSSSCEEEEEEE---TTSCCCEEEESSCC----
T ss_pred eccCCCeEEEEeCCCCcceE-eec--CC--ccEEE-EeCCEEEEEeecCCCCceEEEEE---CCCCCeEEEeCCCc----
Confidence 468888887665333 321 22 23566 4566666554 34444455443 12333444444332
Q ss_pred EEecCCCCeEEEeec-CCeEEEEeCCC
Q 015371 236 IDSRRDGRYFISNGK-DQTTKLWDIRK 261 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~-d~~i~iwd~~~ 261 (408)
..++++++.|.-.+. ...|...++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 346777887775554 56677777665
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.85 E-value=0.13 Score=50.58 Aligned_cols=220 Identities=9% Similarity=0.048 Sum_probs=127.9
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCC
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 185 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (408)
..+|.|.|+.++........ ..-+.-.+|..+.++.-. ...+.|+|+++.+.+....- ..+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-----------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~ 107 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-----------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDD 107 (1630)
T ss_pred CceEEEEECCCCCCcccccc-----------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCC
Confidence 34788888877654322211 133455677777666554 68999999998877776653 456
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecc----cCCeEEEEecCCCCeEEEee-------cCCeE
Q 015371 186 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----LEGITFIDSRRDGRYFISNG-------KDQTT 254 (408)
Q Consensus 186 v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i 254 (408)
|.-=.|- +.+.|+..+ +..|..|++.. ...+.+.+..| ...|..-..+++.++++..| -.|.+
T Consensus 108 VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 108 VTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred ceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 7777776 344455444 35799999852 34555555444 45677777888888776543 35778
Q ss_pred EEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeC--
Q 015371 255 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-- 332 (408)
Q Consensus 255 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-- 332 (408)
.+|..+... -..++||...-.....- ...+...+++.+..
T Consensus 182 QLyS~er~~-----------------------------------sQ~iegha~~F~~~~~~---~~~~~~~l~~f~~~~~ 223 (1630)
T 1xi4_A 182 QLYSVDRKV-----------------------------------SQPIEGHAASFAQFKME---GNAEESTLFCFAVRGQ 223 (1630)
T ss_pred eeeeccccc-----------------------------------chhhhHhHhhhheeccC---CCCCCceEEEEEEecC
Confidence 888877622 23333333211110000 00111223332222
Q ss_pred -CCeEEEEECCCC---ce------eEEEcc---CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCCCC
Q 015371 333 -DNSVYIYDLVSG---AQ------VAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 388 (408)
Q Consensus 333 -dg~i~vwd~~~~---~~------~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 388 (408)
.+.++|-++... .. +..+-. ..+-..++..++....+..-+.-|.|+++|+.++..
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 267888887432 11 111111 123344677788777777778899999999998744
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.81 E-value=0.11 Score=39.60 Aligned_cols=150 Identities=12% Similarity=0.028 Sum_probs=80.3
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.+..++|+|++.+.++ .+|.+.-.+..+............-+ ..--....++.|.|+|.+.++ .||.|+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG-------~~Gw~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIG-------NGGWNQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEE-------CSCGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEec-------ccccccceEEEECCCCCEEEe--CCCEEE
Confidence 5779999999986666 67765555543322111111100000 000001368899999986666 579998
Q ss_pred EEECCCCcceeee-------cCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCc----cceeee-cccCCeE
Q 015371 167 VYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR----ANGVLM-GHLEGIT 234 (408)
Q Consensus 167 i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~-~~~~~i~ 234 (408)
-++-.+.....-+ ..--..+..|.+. |++.+.++. |+.+.-.... ..... ....+. ..-....
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P--~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPP--VSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCC--SSTTCCHHHHCEEEESSSGGGEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCC--CCCCcccccccceeccCCcceEE
Confidence 8876442221111 1122467888888 888877776 7775433211 00100 011111 2223445
Q ss_pred EEEecCCCCeEEEeecCCeE
Q 015371 235 FIDSRRDGRYFISNGKDQTT 254 (408)
Q Consensus 235 ~~~~~~~~~~l~~~~~d~~i 254 (408)
.+.|.+++.+.++. ++.+
T Consensus 186 ~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECTTSCEEEEE--TTEE
T ss_pred EEEECCCCcEEEEe--CCeE
Confidence 57789988876665 6643
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.76 E-value=0.28 Score=45.43 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=101.0
Q ss_pred CCCCeEEEEeCC----CcEEEEEcCCCeeEEEecc-----cccceeeEEEEEeCCCCceEEEeecCc------EEEEEEC
Q 015371 50 NDGSFFVAASQE----SNIKVYNVDKNWKIQKDIE-----TKALRWTITDTSLSPDQRFLVYASICA------IVNIVDV 114 (408)
Q Consensus 50 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~~w~~ 114 (408)
.++.+++.||.+ ..+.+||..++.-...... .......-.++.+..+++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777777753 4688899877632221101 111111122233322777888877543 5788888
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCC--eEEEEECCCCcceeee-----cCcCCCce
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRI-----PAHKSDVN 187 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~v~ 187 (408)
.+..-.......... .-.+++...+++.++.|+.++ .+.+||..+.+-...- ........
T Consensus 476 ~t~~W~~~~~~p~~R-------------~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 542 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR-------------FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA 542 (695)
T ss_dssp TTTEEEECCCCSBCC-------------BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC
T ss_pred CCCcEEECCCCCCCc-------------ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee
Confidence 876544332222111 122333324778888887654 7999999876533221 11122223
Q ss_pred EEEEecCCCCEEEEecC--C-----CeEEEEecccccc--C--CccceeeecccCCeEEEEecCCCCeEEEeecC-----
Q 015371 188 TVCFADETGHLIFSGSD--D-----SLCKVWDRRCFIS--K--GRANGVLMGHLEGITFIDSRRDGRYFISNGKD----- 251 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~--d-----g~i~iwd~~~~~~--~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----- 251 (408)
++.+....+.+++.|+. + ..+.+||+....- . ...+.........-.++....++++++.|+.+
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCC
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCC
Confidence 35555233677888876 2 3588889752110 0 01111100011111123333336777777743
Q ss_pred ---CeEEEEeCCC
Q 015371 252 ---QTTKLWDIRK 261 (408)
Q Consensus 252 ---~~i~iwd~~~ 261 (408)
..+.+||+.+
T Consensus 623 ~~~~~v~~yd~~t 635 (695)
T 2zwa_A 623 DRTNSIISLDPLS 635 (695)
T ss_dssp CTTTSEEEEETTT
T ss_pred CCCCeEEEEECCC
Confidence 4578888776
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.71 E-value=0.53 Score=46.29 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=67.6
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCC------CceEEEeec-CcEEEEEEC
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD------QRFLVYASI-CAIVNIVDV 114 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~~w~~ 114 (408)
.|.+.+.+. .+++.++ ++.+.+++++.+... .. ........|.|+++.|. ++++++|.. |++++++++
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~-~~-~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELR-QI-SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEE-EE-EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCcee-ee-cccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 466655543 4566664 577888888765322 11 11222347999999863 468999986 999999999
Q ss_pred CCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC
Q 015371 115 GSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ 171 (408)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 171 (408)
.+.+......+... .....+.-+.+ ....+|.+|-.||.+..+.+.
T Consensus 590 ~~l~~~~~~~L~~~----------~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 590 PSFELLHKEMLGGE----------IIPRSILMTTF-ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTCCEEEEEECCSS----------CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred CCCCeEEEEECCCC----------CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEc
Confidence 86544322222110 00112333333 234578889899988666543
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.66 E-value=0.29 Score=42.60 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=56.0
Q ss_pred cceeeEecCCccEEEeecCc-eEEEEEEe-cCceeeec---------ccCceeEEEEcCC---CCeEEEE-eC-------
Q 015371 3 VGREVNYSGRGRFSAADSCH-VLSRYLPV-NGPWKVDG---------MNSRVYTSQFSND---GSFFVAA-SQ------- 60 (408)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~-~~~~~~~~-~~~~~l~~---------h~~~v~~~~~s~~---~~~l~t~-~~------- 60 (408)
..+.|+|.|||+++++.... .+.++.+. .....+.. ..+....|+|+|| +.+|..+ +.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 35789999999998887664 34444332 11111111 2455779999995 4444443 32
Q ss_pred -----CCcEEEEEcCCC--e--eEEEecc--cccceeeEEEEEeCCCCceEEEee
Q 015371 61 -----ESNIKVYNVDKN--W--KIQKDIE--TKALRWTITDTSLSPDQRFLVYAS 104 (408)
Q Consensus 61 -----dg~i~iw~~~~~--~--~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~ 104 (408)
...|.-++...+ . ....+.. ..........|+|.|||.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555665432 1 1111111 111112578899999998777654
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.52 E-value=0.4 Score=44.37 Aligned_cols=155 Identities=8% Similarity=0.072 Sum_probs=77.7
Q ss_pred CCCceEEEeecC----cEEEEEECCCCceeeee-eeeeeeeeeeecCCCCCccceEEEEEcC-CCCEEEEEecC------
Q 015371 95 PDQRFLVYASIC----AIVNIVDVGSSARESLA-NVTIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSD------ 162 (408)
Q Consensus 95 ~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------ 162 (408)
.++..++.|+.+ ..+.+||..+.+-.... ...... ..... .-.+++..+ +++.++.|+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~-------~p~~R-~~hs~~~~~~~~~lyv~GG~~~~~~~~ 467 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE-------VPVAR-MCHTFTTISRNNQLLLIGGRKAPHQGL 467 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSC-------CCCCC-BSCEEEEETTTTEEEEECCBSSTTCBC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCC-------CCccc-cceEEEEEccCCEEEEEcCCCCCCCcc
Confidence 456677777653 35778888776543332 100000 00000 122333333 67777777653
Q ss_pred CeEEEEECCCCcceee--ecCcCCCceEEEEecCCCCEEEEecCCC--eEEEEeccccccCCcccee---eecccCCeEE
Q 015371 163 NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCFISKGRANGV---LMGHLEGITF 235 (408)
Q Consensus 163 g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~---~~~~~~~i~~ 235 (408)
..+.+||..+.+-... +... ..-.+++.. .++.+++.|+.++ .+.+||+.. .....+.. .........+
T Consensus 468 ~dv~~yd~~t~~W~~~~~~p~~-R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~~~~~g~~p~~r~~~~a 543 (695)
T 2zwa_A 468 SDNWIFDMKTREWSMIKSLSHT-RFRHSACSL-PDGNVLILGGVTEGPAMLLYNVTE--EIFKDVTPKDEFFQNSLVSAG 543 (695)
T ss_dssp CCCEEEETTTTEEEECCCCSBC-CBSCEEEEC-TTSCEEEECCBCSSCSEEEEETTT--TEEEECCCSSGGGGSCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCC-cccceEEEE-cCCEEEEECCCCCCCCEEEEECCC--CceEEccCCCCCCCcccceeE
Confidence 3588999887643322 2111 111233332 3678888888755 688888641 11111111 1111112233
Q ss_pred EEecCC-CCeEEEeec--C-----CeEEEEeCCC
Q 015371 236 IDSRRD-GRYFISNGK--D-----QTTKLWDIRK 261 (408)
Q Consensus 236 ~~~~~~-~~~l~~~~~--d-----~~i~iwd~~~ 261 (408)
+.+..+ +++++.|+. + ..+.+||+.+
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 444544 667777765 2 3577888776
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.07 E-value=0.48 Score=38.89 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=74.9
Q ss_pred EEcCCCCeEEEEeC----CC-------cEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecC-------cE
Q 015371 47 QFSNDGSFFVAASQ----ES-------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-------AI 108 (408)
Q Consensus 47 ~~s~~~~~l~t~~~----dg-------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~ 108 (408)
+...++.+++.|+. ++ .+.+||..+..-. ...........-..+.+ +++.++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV-GLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE-ECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE-ECCCCCccccccceEEE--CCEEEEEcCccCCCCcccce
Confidence 34457788888873 12 1677887765322 21111111111112222 57777777754 35
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEec------CCeEEEEECCCCcceeeecCc
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAH 182 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~ 182 (408)
+.+||..+.+-......+.... .- ++.. .+++.++.|+. -..+.+||..+.+-...-...
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~------------~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p 194 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVY------------GH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK 194 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEE------------SC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred EEEEeCCCCCEeECCCCCCccc------------cc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC
Confidence 7888888776543332221111 11 1222 36667777764 245899999877533221111
Q ss_pred C-CCceEEEEecCCCCEEEEecCCC-----eEEEEecc
Q 015371 183 K-SDVNTVCFADETGHLIFSGSDDS-----LCKVWDRR 214 (408)
Q Consensus 183 ~-~~v~~l~~~~~~~~~l~~~~~dg-----~i~iwd~~ 214 (408)
. ..-.+++.. ++.+++.|+.++ .+.+||+.
T Consensus 195 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 195 TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECC
Confidence 1 111233333 567777776532 46678864
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.88 E-value=1.2 Score=41.83 Aligned_cols=196 Identities=8% Similarity=0.006 Sum_probs=104.6
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceee
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (408)
.|.++...+++..|..|+.. -+..++..++... ..... ....|.++....++.+.+ |+.+ -+.+++..+.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIK-QTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQH 265 (758)
T ss_dssp CEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEE-EEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEE
T ss_pred eeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEE-eccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEE
Confidence 48888888877755556543 4888887765322 21111 123688888888887655 4444 47778776654322
Q ss_pred eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec-------CcCCCceEEEEecC
Q 015371 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-------AHKSDVNTVCFADE 194 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~ 194 (408)
....... ...-....|.++....+|. |..|+..| +.++... .. ...+. .....|.++.-. .
T Consensus 266 ~~~~~~~-------~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D-~ 333 (758)
T 3ott_A 266 IIHDSRN-------IQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRD-S 333 (758)
T ss_dssp ECCCTTC-------TTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEEC-T
T ss_pred EEcCCCC-------cCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEc-C
Confidence 1110000 0001122588888887776 55666666 5544332 21 11110 123457787766 5
Q ss_pred CCCEEEEecCCCeEEEEeccccccCCccceeee-------cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 195 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
++.+- .|+.+| +..++... ........+. -....|.++.-.++|++. .|+ ++-+..||..+
T Consensus 334 ~g~lW-iGt~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~ 401 (758)
T 3ott_A 334 KGFYW-FGGANG-LIRFTDPA--GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYAT 401 (758)
T ss_dssp TCCEE-EEETTE-EEEESCTT--SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTT
T ss_pred CCCEE-EeeCCc-ceeecccc--cccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCC
Confidence 55544 445554 55666321 0001111111 112458888888777744 455 45689999765
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.86 E-value=0.8 Score=39.79 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=61.6
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeE--EEecccc---cceeeEEEEEeCCC---CceEEEeec------
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI--QKDIETK---ALRWTITDTSLSPD---QRFLVYASI------ 105 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~------ 105 (408)
-...+.|+|.|+|+++++-...+.|++++..++... ..+.... ........|+|+|+ +..|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999997776544456888876544321 1111110 12346789999995 555554432
Q ss_pred -------CcEEEEEECCCCc--eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEe
Q 015371 106 -------CAIVNIVDVGSSA--RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 160 (408)
Q Consensus 106 -------dg~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (408)
...|.-++..... ......+- .. .+....| ....|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~--~~---~p~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLL--AG---LPSSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEE--EE---ECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEE--Ec---CCCCCCC--CCCeEeECCCCeEEEEEC
Confidence 2345555554321 11101000 00 0111122 478999999998666644
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.28 E-value=2.5 Score=36.80 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=55.9
Q ss_pred cceeeEecCCcc--EEEeecCceEEEEEEecCc--ee-------e-ec----ccCceeEEEEcCC----CCeEEEEeC--
Q 015371 3 VGREVNYSGRGR--FSAADSCHVLSRYLPVNGP--WK-------V-DG----MNSRVYTSQFSND----GSFFVAASQ-- 60 (408)
Q Consensus 3 ~~~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~--~~-------l-~~----h~~~v~~~~~s~~----~~~l~t~~~-- 60 (408)
..+.|+|.|||. ++++.....++.+.+.... .. + .+ ..+....|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999995 7777766555444222111 11 1 11 1456788999996 444444332
Q ss_pred C----------CcEEEEEcCCC----------eeEEEec-ccccceeeEEEEEeCCCCceEEEeecC
Q 015371 61 E----------SNIKVYNVDKN----------WKIQKDI-ETKALRWTITDTSLSPDQRFLVYASIC 106 (408)
Q Consensus 61 d----------g~i~iw~~~~~----------~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 106 (408)
+ ..|.-|.+..+ +.+.... ....| .-..|+|.|||.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCCC
Confidence 1 13444665421 1222221 12234 46789999999877765543
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.30 E-value=3 Score=34.55 Aligned_cols=254 Identities=17% Similarity=0.113 Sum_probs=122.1
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC---CCEEEEE---e
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAA---G 160 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~---~ 160 (408)
....|+|.|||.++++--..|.|++++..++.......+... ..........|+++|+ +..|++. .
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v--------~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV--------SPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC--------CCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce--------eecCCCCceeeEeccccccCCEEEEEEecC
Confidence 477899999998777655589999987655543222211100 0011235889999995 3445443 2
Q ss_pred cCCeEEEEECCCCc--------c--e-eeec-CcCCCceEEEEecCCCCEEEEecC-------------CCeEEEEeccc
Q 015371 161 SDNFIYVYDLQANK--------C--S-LRIP-AHKSDVNTVCFADETGHLIFSGSD-------------DSLCKVWDRRC 215 (408)
Q Consensus 161 ~dg~i~i~d~~~~~--------~--~-~~~~-~~~~~v~~l~~~~~~~~~l~~~~~-------------dg~i~iwd~~~ 215 (408)
.++.|.-|.+..+. . + ..+. .....-..|.|. +++.+.++.+. .|.|.-.+...
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 34567777665421 1 1 1121 112234679999 78887777542 34554445431
Q ss_pred cccCC----ccceeeecccCCeEEEEecCCCCeEEEee-cCCeEEEEeCCCCcCccccccccccccccceeeccccccee
Q 015371 216 FISKG----RANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 290 (408)
Q Consensus 216 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (408)
..... .....-.+|. ....++|+|+|.++++-. .|+.=.|--+.... .+-|....- ...
T Consensus 184 ~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~----------nyGwP~~~g--~~~--- 247 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGD----------NYGWPEAEG--KGG--- 247 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTC----------BCCTTTCCS--SCC---
T ss_pred CccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCC----------EecCCcccC--CCC---
Confidence 10000 0111122443 346788998877554421 22211121111111 111111000 000
Q ss_pred eccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCce----eEEEccCCCCeeeeeEeCCC
Q 015371 291 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ----VAKLDFHNAPVRDCCWHPIY 366 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~ 366 (408)
......++..+..+.. ....+. |. +|.++...-..+.|....+..... ...+.+....+.+++..|||
T Consensus 248 -~~~~~~P~~~~~~~~~--ap~G~~----~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG 319 (347)
T 3das_A 248 -GSGFHDPVAQWSTDEA--SPSGIA----YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD 319 (347)
T ss_dssp -CTTCCCCSEEECTTTC--CEEEEE----EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT
T ss_pred -CccccCCcEecCCCCC--CCcceE----EE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC
Confidence 0011122333332210 111111 11 255555555566677667654432 22334445689999999999
Q ss_pred CeEEeec
Q 015371 367 PMLISSS 373 (408)
Q Consensus 367 ~~l~s~~ 373 (408)
.++++.+
T Consensus 320 ~lyv~td 326 (347)
T 3das_A 320 KLWLVTS 326 (347)
T ss_dssp EEEEEEC
T ss_pred cEEEEEc
Confidence 8666543
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.93 E-value=3 Score=33.45 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=97.1
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCcee
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (408)
..|..++...+-. ++. . ||.|+.|-.....++...... ...|..++...+-. +.-. +|.|..|-.......
T Consensus 63 ~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gql 133 (282)
T 3qhy_B 63 SGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQT 133 (282)
T ss_dssp SCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTT
T ss_pred CCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcC
Confidence 4677777665433 333 4 899999986653222211111 22577777654433 3334 899999976543221
Q ss_pred eeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecCcCCCceEEEEecCCCCEEE
Q 015371 121 SLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 200 (408)
.... . ....|..++...+. .++-. +|.|+.|-......+..-......|..++.. ....++
T Consensus 134 g~~~-~-------------~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~a 194 (282)
T 3qhy_B 134 TVPA-E-------------AQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSLA 194 (282)
T ss_dssp SCCG-G-------------GGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEEE
T ss_pred CCCc-c-------------CCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEEE
Confidence 1100 0 01146666654333 23333 7999999765432222111123567777764 333444
Q ss_pred EecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 201 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
. .||.|..|-.......+.+. .....|..++....... ... ||.+..|-...
T Consensus 195 l--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~~--al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 195 L--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYSL--ALK-NGKVIAWGSSR 246 (282)
T ss_dssp E--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCEE--EEE-TTEEEEESTTC
T ss_pred E--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEEE--EEE-CCEEEEecCCC
Confidence 4 59999999754211111111 12345777776544333 333 99999997655
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.83 E-value=1.1 Score=39.61 Aligned_cols=83 Identities=10% Similarity=0.180 Sum_probs=49.4
Q ss_pred eEEEEEeCCCCceEEEee-cCcEEEEEECCCCceeeeeee-eeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCe
Q 015371 87 TITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANV-TIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 164 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (408)
....+..+|||+++++++ .+.++.++|++.........+ .....+. .. .+-.......+|.++|.-..+..-|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~-ae--~e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIV-GE--PELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEE-EC--CBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceE-ee--ccCCCcccEEEECCCCceEeeeeecce
Confidence 345678999999998766 467899999874211000000 0000000 00 001124778899999954444456999
Q ss_pred EEEEECCC
Q 015371 165 IYVYDLQA 172 (408)
Q Consensus 165 i~i~d~~~ 172 (408)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999864
No 350
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.74 E-value=4.8 Score=33.07 Aligned_cols=210 Identities=8% Similarity=0.049 Sum_probs=114.0
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEc---CC------CeeEEEecccccceeeEEEE-EeCC--CCceEEEeecCcE
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNV---DK------NWKIQKDIETKALRWTITDT-SLSP--DQRFLVYASICAI 108 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~---~~------~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~dg~ 108 (408)
+.+..+........|+.-+..|.++-... .. +..+...+.....+ .|.++ ...+ +..++++.+.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e-~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEE-RIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTC-CEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCC-EEEEEEEeccCCCCCEEEEEcCCCE
Confidence 44555555555566666667776655443 22 11111222222222 45444 3432 5788999999999
Q ss_pred EEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC--CCcc---------ee
Q 015371 109 VNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ--ANKC---------SL 177 (408)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~---------~~ 177 (408)
++.-.+..-..... .....+.+ .+ ...+..+........++..+..|.+..+... .-.. ..
T Consensus 121 iKr~~l~~~~~~~r---~G~~~i~l----ke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i 192 (327)
T 3uc1_A 121 VKKSKLTDFDSNRS---GGIVAVNL----RD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGM 192 (327)
T ss_dssp EEEEEGGGGCCCCS---SCEESCBC----CT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESS
T ss_pred EEEeEHHHhhcccc---CceEEEEE----CC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeee
Confidence 99888754322110 01101111 01 1235555555555678888889999888776 2111 11
Q ss_pred eecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccC-----CccceeeecccCCeEEEEecCCCCeEEEeecCC
Q 015371 178 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 252 (408)
Q Consensus 178 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 252 (408)
.+. ....|.++... +.+..++..+..|.++.-.+...... +.....+..-.+.+..+....+...++..+.+|
T Consensus 193 ~L~-~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 193 RFN-IDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp CCC-TTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred cCC-CCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 122 24557777666 45568888899999998876532221 111122222234455554444455666677788
Q ss_pred eEEEEeCCC
Q 015371 253 TTKLWDIRK 261 (408)
Q Consensus 253 ~i~iwd~~~ 261 (408)
.+.-++...
T Consensus 271 ~~ir~~~~~ 279 (327)
T 3uc1_A 271 GVIRTAARQ 279 (327)
T ss_dssp CEEEEEGGG
T ss_pred eEEEEehhh
Confidence 877777654
No 351
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.16 E-value=9.9 Score=35.62 Aligned_cols=283 Identities=11% Similarity=0.057 Sum_probs=144.8
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEecccc--cceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCc
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 118 (408)
..|.++....+|.+.+ |+.+| +..++..++.......... .....|.++...+++..|..|+. +-+..++..+.+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888888887655 55554 7788876653221111110 01224888888877765555654 457788887665
Q ss_pred eeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec-------CcCCCceEEEE
Q 015371 119 RESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-------AHKSDVNTVCF 191 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~ 191 (408)
........ .. .|.++...++|. |..|+. +-+.+++..+++...... -....|.++..
T Consensus 223 ~~~~~~l~--~~------------~i~~i~~d~~g~-lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 286 (758)
T 3ott_A 223 IKQTEAFH--NN------------SIKSLALDGNGD-LLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA 286 (758)
T ss_dssp EEEEEEEE--EE------------EEEEEEECTTCC-EEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE
T ss_pred EEeccCCC--CC------------eEEEEEEcCCCC-EEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE
Confidence 43322111 11 488888887776 445554 458888887654322111 12245788876
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccCCcccee--e--ecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccc
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--L--MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 267 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 267 (408)
. .++. |..|+..| +.++... ........ . ......|.++.-..+|.+. .|+.+| +..++..+......
T Consensus 287 D-~~g~-lWiGT~~G-l~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~ 358 (758)
T 3ott_A 287 D-QEHN-IWLGTDYG-ISLSRYN---SALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDA 358 (758)
T ss_dssp C-TTCC-EEEEESSS-EEEECCC---C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCC
T ss_pred c-CCCC-EEEEeCCc-ccccccC---CceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeeccccccccee
Confidence 6 5554 44555566 5444321 01110000 0 0123468888888777744 445554 66666543110000
Q ss_pred cccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCCcee
Q 015371 268 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (408)
. .... ......+.. ..+.++....+|+ |..|+ ++-+..||..+++..
T Consensus 359 ~---------------------~~~~--~~~~~~l~~--------~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 359 I---------------------WYRM--GDKTYPLSH--------NRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFI 405 (758)
T ss_dssp E---------------------EECT--TCSSSCCSC--------SCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEE
T ss_pred E---------------------Eecc--CCcCCCCCC--------CceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEE
Confidence 0 0000 000000000 0112222334455 44455 456999998776543
Q ss_pred EEE--cc----CCCCeeeeeEeCCCCeEEeecCCCcEEEEeeC
Q 015371 348 AKL--DF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 384 (408)
Q Consensus 348 ~~~--~~----~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~ 384 (408)
.-. .. ....|.++.-.+++.+.+ |+..+-|.+++..
T Consensus 406 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 406 HYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp EEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred EeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence 221 11 134578887777776444 5555567777754
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.28 E-value=6 Score=31.67 Aligned_cols=144 Identities=10% Similarity=0.068 Sum_probs=75.8
Q ss_pred eEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEE
Q 015371 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 166 (408)
Q Consensus 87 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 166 (408)
.|..++.... ..++. . ||.+..|-........... .. ...|..++...+.. ++. . ||.|+
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~-~~-------------~~~i~~ia~G~~hs-~~l-~-~G~v~ 84 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPA-AT-------------QSGVDAIAAGNYHS-LAL-K-DGEVI 84 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCG-GG-------------GSCCCEEEECSSEE-EEE-E-TTEEE
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCc-cC-------------CCCEEEEEeCCCEE-EEE-E-CCEEE
Confidence 4666666533 23333 4 8999999765433211100 00 11466666654332 333 4 89999
Q ss_pred EEECCCCcceeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEeccccccCCccceeeecccCCeEEEEecCCCCeEE
Q 015371 167 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI 246 (408)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 246 (408)
.|-....-.+..-..-...|..++.. .. ..+.-. ||.|..|-... .++. .........|..++...+. .+
T Consensus 85 ~wG~n~~Gqlg~P~~~~~~v~~ia~G-~~--hs~al~-~G~v~~wG~n~---~gql-g~~~~~~~~i~~i~~G~~~--~~ 154 (282)
T 3qhy_B 85 AWGGNEDGQTTVPAEARSGVDAIAAG-AW--ASYALK-DGKVIAWGDDS---DGQT-TVPAEAQSGVTALDGGVYT--AL 154 (282)
T ss_dssp EEECCTTSTTCCCGGGSSSEEEEEEE-TT--EEEEEE-TTEEEEEECCT---TSTT-SCCGGGGSSEEEEEECSSE--EE
T ss_pred EeeCCCCCCCCCCcccCCCeEEEECc-CC--EEEEEe-CCeEEEecCCC---CCcC-CCCccCCCCeEEEEcccCE--EE
Confidence 99765432222111123467888776 32 333334 99999997542 1111 1111234567777665333 22
Q ss_pred EeecCCeEEEEeCCC
Q 015371 247 SNGKDQTTKLWDIRK 261 (408)
Q Consensus 247 ~~~~d~~i~iwd~~~ 261 (408)
.-. ||.|..|-...
T Consensus 155 ~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 155 AVK-NGGVIAWGDNY 168 (282)
T ss_dssp EEE-TTEEEEEECCT
T ss_pred EEE-CCEEEEecCCC
Confidence 333 79999997665
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.05 E-value=9.5 Score=32.23 Aligned_cols=108 Identities=6% Similarity=-0.055 Sum_probs=55.4
Q ss_pred ceEEEEEcC-C-CCEEEEEecCCeEEEEECCCCcceeeec-------------------CcCCCceEEEEecCCCCEEEE
Q 015371 143 GIFSVKFST-D-GQELVAAGSDNFIYVYDLQANKCSLRIP-------------------AHKSDVNTVCFADETGHLIFS 201 (408)
Q Consensus 143 ~i~~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~~~~~v~~l~~~~~~~~~l~~ 201 (408)
.|.++++.| + ...+.+++..+.|...+-. ++.-..+. .....+.+|.+.|.+...++.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 478899987 2 4567777666766655432 22111111 012357789988545555555
Q ss_pred ecCCCeEEEEeccccccCCccceeeec-----c--------cCCeEEEEecCC-CCeEEEeecCCeEEEE
Q 015371 202 GSDDSLCKVWDRRCFISKGRANGVLMG-----H--------LEGITFIDSRRD-GRYFISNGKDQTTKLW 257 (408)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~--------~~~i~~~~~~~~-~~~l~~~~~d~~i~iw 257 (408)
+..++.|...+- .++.-..+.. + ...+.++.+.|. ...|..+...+ |...
T Consensus 195 g~~~ggl~~s~D-----gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 195 GMSSGGVFESTD-----AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEETBEEEEESS-----TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EECCCCEEEECC-----CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 554554444321 1211111110 0 134788999885 35566665443 4443
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.87 E-value=13 Score=35.87 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=46.7
Q ss_pred cceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeecC-----cCCCceEEEEecCCCCEEEEe---cCCCeEEEEec
Q 015371 142 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-----HKSDVNTVCFADETGHLIFSG---SDDSLCKVWDR 213 (408)
Q Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~~~---~~dg~i~iwd~ 213 (408)
..+.++...++..++++-+.|+.+++|++.+++++.+..- ...........|..+.++.+- ..+|..++|.+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 3577788888888999999999999999999988776421 111112222333334443322 34567777765
Q ss_pred c
Q 015371 214 R 214 (408)
Q Consensus 214 ~ 214 (408)
.
T Consensus 316 ~ 316 (950)
T 4gq2_M 316 N 316 (950)
T ss_dssp E
T ss_pred e
Confidence 3
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.96 E-value=17 Score=33.74 Aligned_cols=277 Identities=8% Similarity=0.016 Sum_probs=0.0
Q ss_pred EEcCCCCeEEEE-----eCCCcEEEEEcCCCeeEEEeccccccee------eEEEEEeCCCCceEEEe----------ec
Q 015371 47 QFSNDGSFFVAA-----SQESNIKVYNVDKNWKIQKDIETKALRW------TITDTSLSPDQRFLVYA----------SI 105 (408)
Q Consensus 47 ~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~----------~~ 105 (408)
+++||+++++.+ +.-..++++|+.+++.+...+. ...+. ....++|..++..+++. +.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Q ss_pred CcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCC-----EEEEEe---cCCeEEEEECCC--Ccc
Q 015371 106 CAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQ-----ELVAAG---SDNFIYVYDLQA--NKC 175 (408)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~---~dg~i~i~d~~~--~~~ 175 (408)
...|+.|.+.+........+.....- --.....+++++ .+++.+ ....+++.+... ++.
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEY-----------IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL 283 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTS-----------CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE
T ss_pred CCEEEEEECCCChHHCeEEeccCCCc-----------eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc
Q ss_pred eeeecCcCCCceEEEEecCCCCEEEEecC----------CCeEEEEeccccc-----cCCccceeeecccCCeEEEEecC
Q 015371 176 SLRIPAHKSDVNTVCFADETGHLIFSGSD----------DSLCKVWDRRCFI-----SKGRANGVLMGHLEGITFIDSRR 240 (408)
Q Consensus 176 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~ 240 (408)
..........+ ..+ .++.+++.... .+.|...|+.... ...-...........+..+.+..
T Consensus 284 ~~l~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 284 QKINMPSDATL---QGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK 359 (711)
T ss_dssp EECCSCTTCEE---EEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS
T ss_pred eEeecCCcceE---eee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC
Q ss_pred CCCeEEEeecCCe--EEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeeccc-ceeeEEEEEee
Q 015371 241 DGRYFISNGKDQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFS 317 (408)
Q Consensus 241 ~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 317 (408)
+ .++++...++. +.++|+.+ ..+.... ........+..
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~--------------------------------------g~~~~~~~i~lp~~~~~~~ 400 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLEN--------------------------------------EQWTKPVVLKLPYQNAIFG 400 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEET--------------------------------------TEECCCEEECCCSTTCEEE
T ss_pred C-EEEEEEEECCEEEEEEEECCC--------------------------------------CceEEEeccCCCCCeEEEE
Q ss_pred ccccCCCcEEEEeeCC----CeEEEEECCCCceeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEE
Q 015371 318 PEYSTAQKYIYTGSSD----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 381 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw 381 (408)
...++++..++..... +.++.+|+. .....+.........-.+ .-.+..+.+.....|..|
T Consensus 401 ~~~~~~~~~~~~~~ss~~~P~~~~~~d~~--~~~~~l~~~~~~~~~~~~-~~e~v~~~s~DG~~i~~~ 465 (711)
T 4hvt_A 401 MSSYEEEEEALITIENSIVPPTIYLWVKT--HELKIIRKALYSFDSENY-VLEQKEATSFDGVKIPYF 465 (711)
T ss_dssp EECCTTCSCEEEEEECSSSCCEEEEECTT--SCEEEEECCSSCCCGGGE-EEEEEEEECTTSCEEEEE
T ss_pred EeecCcCCEEEEEEecCCCCCEEEEEeCC--CcEEEEecCCcccCcccC-eeEEEEEECCCCeEEEEE
No 356
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.38 E-value=11 Score=30.01 Aligned_cols=205 Identities=7% Similarity=0.011 Sum_probs=114.0
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEE---EEcCCCeeEEEecccccceeeEEEEEeCC-CCceEEEeecCcEEEEEECCC
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKV---YNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~i---w~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~ 116 (408)
+.+..+.-.....+|+.-+.+|.++- |++....... + ... ...|..+.-.. +..+++..+.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--l-l~~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--L-KSR-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--C-SST-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--c-CCC-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 45666555555566777777776654 3343332111 2 222 22455553321 467899999999999988754
Q ss_pred CceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCC---------cceeeecCcCCCce
Q 015371 117 SARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---------KCSLRIPAHKSDVN 187 (408)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~ 187 (408)
-. ... .....+.+. ..+.+..+........++..+..|.++.+....- .....+. ....|.
T Consensus 100 ~~-~~~---~G~~~i~lk-----egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv 169 (276)
T 3no0_A 100 FE-YKA---QGMPIIKLT-----EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETS 169 (276)
T ss_dssp TT-TCS---TTEECSCCC-----TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEE
T ss_pred hh-hhc---CCeEEEecC-----CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEE
Confidence 32 110 011111110 1124555555556667888889999888875321 1111232 235566
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEeccccccCC---ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEE--EeCCC
Q 015371 188 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL--WDIRK 261 (408)
Q Consensus 188 ~l~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i--wd~~~ 261 (408)
.+... +++..++..+..|.++...+....... +-...+ ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 170 ~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 170 GLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66655 456688888999999988865332221 112222 23445555544334456777777888777 77655
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.34 E-value=18 Score=31.46 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=34.7
Q ss_pred CceeEEEEcCCCC-eEEEEeCCCcEEEEEcCCCe---eEEEecc--cc----cceeeEEEEEeCCC
Q 015371 41 SRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNW---KIQKDIE--TK----ALRWTITDTSLSPD 96 (408)
Q Consensus 41 ~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~---~~~~~~~--~~----~~~~~v~~~~~~~~ 96 (408)
..-+.|+|.|||. .|+++...|.|++++.+... .+..+.. .. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 45556778999999754321 1111111 00 11346789999996
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.88 E-value=17 Score=30.71 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=75.1
Q ss_pred cCceeEEEEcC--CCCeEEEEeCCC----cEEEEEcCCCeeEEEeccc---cc--------ceeeEEEEEeCC-C-CceE
Q 015371 40 NSRVYTSQFSN--DGSFFVAASQES----NIKVYNVDKNWKIQKDIET---KA--------LRWTITDTSLSP-D-QRFL 100 (408)
Q Consensus 40 ~~~v~~~~~s~--~~~~l~t~~~dg----~i~iw~~~~~~~~~~~~~~---~~--------~~~~v~~~~~~~-~-~~~l 100 (408)
...|.+|++.| ++.++| ++..| .|... .+.+......... .. ....|.++++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35699999998 455444 44444 33332 2333222222111 00 112588899987 2 5566
Q ss_pred EEeecCcEEEEEECCCCceeeeeeeeeeee-eeeec---CCCCCccceEEEEEcC-CCCEEEEEecCCeEEEEECCCCcc
Q 015371 101 VYASICAIVNIVDVGSSARESLANVTIHKG-LDFSA---DGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC 175 (408)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 175 (408)
.++...+.|...+-....-........+.. ..+.. ........+.+|.+.| +...++++..++.|...+- .++.
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 666655655443222111111110000000 00000 0001122588899987 3455666665565555432 2222
Q ss_pred eeeecC-----c--------CCCceEEEEecCCCCEEEEecCCC
Q 015371 176 SLRIPA-----H--------KSDVNTVCFADETGHLIFSGSDDS 206 (408)
Q Consensus 176 ~~~~~~-----~--------~~~v~~l~~~~~~~~~l~~~~~dg 206 (408)
-..+.. + ...+.++.+.|.++..++++...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 111110 0 124788999855567777776555
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.94 E-value=20 Score=30.20 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEECCCCcc-----------eeeecC-cCCCceEEEEecCCCCEEEEecCCCeEEEE
Q 015371 144 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-----------SLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVW 211 (408)
Q Consensus 144 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~iw 211 (408)
+..++++....+.++-..+|.|+.|-....-. ...+.. ....|..++.. ....++-..+|.|..|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 55566666666777778899999996532111 111111 12256666653 4455556678999999
Q ss_pred eccccccCC------c-cceeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 212 DRRCFISKG------R-ANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 212 d~~~~~~~~------~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
-.......+ . ....... ....|..++......+.+....||.|..|-...
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 643211000 0 0001111 123466666544335666677899999997654
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.75 E-value=8.5 Score=37.15 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=32.6
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
..|.+++..++..++++-+.|+++|+|++.++..+...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45778888889999999999999999999999776653
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.64 E-value=33 Score=28.84 Aligned_cols=174 Identities=13% Similarity=0.249 Sum_probs=96.4
Q ss_pred CceeEEEEcCCCCeEEE--EeC-------------CCcEEEEEcCCC--eeEEEeccccc---ceeeEEEEEeC---CC-
Q 015371 41 SRVYTSQFSNDGSFFVA--ASQ-------------ESNIKVYNVDKN--WKIQKDIETKA---LRWTITDTSLS---PD- 96 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t--~~~-------------dg~i~iw~~~~~--~~~~~~~~~~~---~~~~v~~~~~~---~~- 96 (408)
-.|..+...+++++-+. |-. --.|.+||+.++ +.++....... ....+..+.+. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 45788888887765443 211 125889999998 77665443211 23357777776 22
Q ss_pred ---CceEEEee-cCcEEEEEECCCCceeeeeeeeeee--eeeeecCCCC--CccceEEEEEcCC----CCEEEEEecCC-
Q 015371 97 ---QRFLVYAS-ICAIVNIVDVGSSARESLANVTIHK--GLDFSADGDE--DEFGIFSVKFSTD----GQELVAAGSDN- 163 (408)
Q Consensus 97 ---~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~i~~~~~~~~----~~~l~~~~~dg- 163 (408)
+.+...+. ..+.|.++|+.+++........... ...+...+.. -...+..|+++|+ ++.|......+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~ 246 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI 246 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence 34444443 4568999999988765443211100 0111111110 0236899999997 77777766544
Q ss_pred eEEEEE---CCCCcceeee--cCcCC---CceEEEEecCCCCEEEEecCCCeEEEEecc
Q 015371 164 FIYVYD---LQANKCSLRI--PAHKS---DVNTVCFADETGHLIFSGSDDSLCKVWDRR 214 (408)
Q Consensus 164 ~i~i~d---~~~~~~~~~~--~~~~~---~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (408)
.++-.. ++.......+ .+..+ .-..+++.+.++.++++--....|..|+..
T Consensus 247 ~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 247 KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 333332 1222111111 12222 223455544678888888888999999964
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=73.72 E-value=36 Score=27.86 Aligned_cols=155 Identities=7% Similarity=0.029 Sum_probs=87.1
Q ss_pred CCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC---
Q 015371 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ--- 171 (408)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--- 171 (408)
|+...+++.+.+|.|+--.+..-+..... .. .-...+.+..+........|+..+..|.++-+...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~------~~-----~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp 71 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ------DF-----AMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELP 71 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC------CC-----CCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc------cc-----ccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCc
Confidence 56778889999999987655321110000 00 00112235555555556677777888987766542
Q ss_pred ------CCcceeee-c-CcCCCceEEEEecC--CCCEEEEecCCCeEEEEeccccccC----CccceeeecccCCeEEEE
Q 015371 172 ------ANKCSLRI-P-AHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISK----GRANGVLMGHLEGITFID 237 (408)
Q Consensus 172 ------~~~~~~~~-~-~~~~~v~~l~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~i~~~~ 237 (408)
.|.++..+ . .....|.++...+. ++.+++..+.+|.++-..+...... +.....+... +.+..+.
T Consensus 72 ~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~ 150 (323)
T 1wp5_A 72 DIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVH 150 (323)
T ss_dssp BCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEE
T ss_pred CCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEE
Confidence 12222111 1 12344665544322 2567888999999999887543221 2222223322 5555555
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCC
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.......++..+.+|.+..+....
T Consensus 151 ~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 151 LTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EECSCSEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHH
Confidence 555556678888899988887765
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=71.59 E-value=40 Score=27.55 Aligned_cols=203 Identities=9% Similarity=0.021 Sum_probs=103.7
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEE-EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceee--eeeee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQ-KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES--LANVT 126 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~--~~~~~ 126 (408)
|+..++++.+.+|.|+--.+..-.... ......... .+..+........|+..+..|.+.-+....-.... ..-.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D-~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTD-RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTC-CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCC-EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566778888999988877654210000 001112222 34444444445556666677876655543210000 00000
Q ss_pred eeeeeeeecCCCCCccceEEE-EEcC--CCCEEEEEecCCeEEEEECCCCc--------ceeeecCcCCCceEEEEecCC
Q 015371 127 IHKGLDFSADGDEDEFGIFSV-KFST--DGQELVAAGSDNFIYVYDLQANK--------CSLRIPAHKSDVNTVCFADET 195 (408)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~l~~~~~~ 195 (408)
....+.+. ....|..+ ...+ ++.+++.++.+|.++...+..-. ....+.. ...+..+... ..
T Consensus 82 i~~~i~L~-----~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~-~~ 154 (323)
T 1wp5_A 82 IANIIPID-----RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLT-DG 154 (323)
T ss_dssp GGGTSCCC-----TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEE-CS
T ss_pred hhhccCCC-----CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEe-CC
Confidence 00111110 11135544 3332 25678889999999998874221 1112332 2556666655 44
Q ss_pred CCEEEEecCCCeEEEEeccccccCCc-----cceeeecccCCeEEEEecCCCC-eEEEeecCCeEEEEeCCC
Q 015371 196 GHLIFSGSDDSLCKVWDRRCFISKGR-----ANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 261 (408)
.+.++..+.+|.+..+........+. ....+. ....|.++...+++. .+++.+..|..+..++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55677788889888887642211111 111222 234566665444444 677788888888777655
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=71.05 E-value=71 Score=30.14 Aligned_cols=160 Identities=9% Similarity=-0.010 Sum_probs=75.3
Q ss_pred cCceeEEEEcCC-CCeEEEEeCCCcEEEEEcCCCeeEEEeccccc----ceeeEEEEEeCCC-CceEEEeecCcE----E
Q 015371 40 NSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPD-QRFLVYASICAI----V 109 (408)
Q Consensus 40 ~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~dg~----i 109 (408)
.+.|.+|+++|. ...+..++..+.|...+ +.+..-........ ....|.+|++.|. ...++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 35566666667665554 33433333222111 1236999999984 344544432211 2
Q ss_pred EEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCC-CCEEEEEecCCeEEEEECCCCcceeeec------Cc
Q 015371 110 NIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIP------AH 182 (408)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~ 182 (408)
.||....+...-... ... ........ ....+..+++.|. ...++++...+.|.. ....++.-..+. ..
T Consensus 93 ~v~~S~DgG~TW~~~-~~~--~~~~~~~~-~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~ 167 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIY-ESP--FPMGANDM-GRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTN 167 (789)
T ss_dssp EEEEESSTTSEEEEE-ECS--SCCCTTST-TTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCST
T ss_pred EEEEECCCCCcceec-cCC--cccCccCC-CccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCC
Confidence 344333322111111 000 00000000 0012456777774 445666653443322 222232222221 11
Q ss_pred CCCceEEEEecCCCCEEEEecCC
Q 015371 183 KSDVNTVCFADETGHLIFSGSDD 205 (408)
Q Consensus 183 ~~~v~~l~~~~~~~~~l~~~~~d 205 (408)
...+..+.+.|.++..++++..+
T Consensus 168 ~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 168 GIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCeEEEEECCCCCCEEEEEEcC
Confidence 24578888886566666666554
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.60 E-value=14 Score=33.25 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=39.1
Q ss_pred eccccCCCcEEEEeeCC------------CeEEEEECCCCceeEEEccC-CCCeeeeeEeCCCCeEEee
Q 015371 317 SPEYSTAQKYIYTGSSD------------NSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISS 372 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 372 (408)
.++|+|.|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|+..
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678889866654332 34666777777776666555 4579999999999977654
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.34 E-value=21 Score=35.33 Aligned_cols=37 Identities=32% Similarity=0.371 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeee
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 179 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 179 (408)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556667778889999999999999999999887764
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.66 E-value=47 Score=26.39 Aligned_cols=207 Identities=9% Similarity=-0.011 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEEC---CCCcceeeecCcCCCceEEEEecC-CCCEEEEecCCCeEEEEeccccc-
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDL---QANKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFI- 217 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~iwd~~~~~- 217 (408)
.+..+.......+|+.-+..|.++-..+ ........+. ....|..+.. +. +...++..+.+|.++-..+....
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 3555544444556666777887765443 2221111132 3455666643 22 56789999999999999875322
Q ss_pred -cCCccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCC
Q 015371 218 -SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 296 (408)
Q Consensus 218 -~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (408)
..+.....+.. .+.+..+........++..+..|.+..+............ .+
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a-------------------------~G 156 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGA-------------------------RG 156 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTC-------------------------CC
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCC-------------------------CC
Confidence 01111222222 3455555555556678888889998888765422110000 01
Q ss_pred cceeeeecccceeeEEEEEeeccccCCCcEEEEeeCCCeEEEEECCCC-------ceeEEEccCCCCeeeeeEeCCCCeE
Q 015371 297 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------AQVAKLDFHNAPVRDCCWHPIYPML 369 (408)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 369 (408)
.....+.... .+..... . +++.+++..+..|.++...+... +-+..+ ...+.+..+....+...+
T Consensus 157 v~~i~L~~~d---~vv~~~~---~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i 228 (276)
T 3no0_A 157 VQGIKLEKND---ETSGLRI---W-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVEL 228 (276)
T ss_dssp EECCCCCTTC---CEEEEEE---E-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEE
T ss_pred EEEEccCCCC---EEEEEEE---e-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEE
Confidence 1111111111 1111111 1 23568888899999988876432 222233 233445554433333456
Q ss_pred EeecCCCcEEE--EeeCC
Q 015371 370 ISSSWDCNIVR--WEIPG 385 (408)
Q Consensus 370 ~s~~~dg~v~i--w~~~~ 385 (408)
+..+.+|.+.. ++...
T Consensus 229 ~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 229 LITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEEEGGG
T ss_pred EEEcCCCeEEEeeeCHHH
Confidence 66677888888 87654
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.53 E-value=53 Score=26.64 Aligned_cols=159 Identities=9% Similarity=0.069 Sum_probs=88.7
Q ss_pred CCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCC--
Q 015371 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-- 172 (408)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-- 172 (408)
++..++++.+.+|.|+--.+..-...... -....... -...+.+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~-~~g~~~~~-----lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip 79 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG-GKGLSSFD-----LNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIK 79 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS-CCCEECCC-----CCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC-CCCceecc-----cCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCC
Confidence 56778889999999998776433211100 00000000 01112355555555566778888889887776531
Q ss_pred -------Ccce---eeecCcCCCceEEEEecC--CCCEEEEecCCCeEEEEecccccc---CCccceeeecccCCeEEEE
Q 015371 173 -------NKCS---LRIPAHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEGITFID 237 (408)
Q Consensus 173 -------~~~~---~~~~~~~~~v~~l~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~ 237 (408)
|.++ ..+. ....|..+...+. +...++..+.+|.++...+..... .+.....+.. .+.+..+.
T Consensus 80 ~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 80 DSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp C-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 1111 1122 2344555544321 456788889999999988754321 2222333333 45666666
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCC
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
...++..++..+.+|.+..+....
T Consensus 158 ~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHH
Confidence 555566788888999998888765
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.82 E-value=7.6 Score=38.44 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=31.8
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
..+.+++..++..++++-+.|+++|||++.++..+...
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35667777888899999999999999999999776653
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=63.50 E-value=59 Score=26.40 Aligned_cols=203 Identities=12% Similarity=0.096 Sum_probs=109.5
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEE------EecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQ------KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
++..++++.+.+|.|+--.+..-.... ......... .+..+........++..+..|.++-.....-......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D-~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCC-EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 566788899999999988765431111 011112222 3444444444556666777887766655321100000
Q ss_pred e--eeeeeeeeeecCCCCCccceEEEEEcC---CCCEEEEEecCCeEEEEECCC-------CcceeeecCcCCCceEEEE
Q 015371 124 N--VTIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQA-------NKCSLRIPAHKSDVNTVCF 191 (408)
Q Consensus 124 ~--~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~l~~ 191 (408)
. .+....+.+. ....|..+...+ +..+++..+..|.++...+.. |.....+.. ...+..+..
T Consensus 85 ~~G~~i~~~l~l~-----~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~ 158 (312)
T 1suu_A 85 SKGQNISELINLG-----DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEI 158 (312)
T ss_dssp ---CBGGGTSCCC-----TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEE
T ss_pred CCCcChhhccCCC-----CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEE
Confidence 0 0000011110 111344443332 456788889999999988743 222223333 456666666
Q ss_pred ecCCCCEEEEecCCCeEEEEeccccccC-----CccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 192 ADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
. .....++..+.+|.+..+........ +.....+.. ...|..+....++..+++.+..|..+..++..
T Consensus 159 ~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 159 V-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp E-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred e-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6 44567778888999988886532111 222222332 44566665555566788888899988888765
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=63.34 E-value=58 Score=26.33 Aligned_cols=252 Identities=9% Similarity=0.020 Sum_probs=124.5
Q ss_pred CCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEEC---C
Q 015371 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL---Q 171 (408)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---~ 171 (408)
|+...+++.+.+|.|+--.+..-+..... -.......+ ...+.+..+........|+..+..|.++-+.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~-~~g~~~~~~-----ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp 74 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRG-GKGKSAARI-----KEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLP 74 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccC-CCCceeeee-----CCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCc
Confidence 45667888999999987766542211100 000000000 01123545555555667777778888776654 2
Q ss_pred C------Cccee---eecCcCCCceEEEEec--CCCCEEEEecCCCeEEEEeccccccC---CccceeeecccCCeEEEE
Q 015371 172 A------NKCSL---RIPAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWDRRCFISK---GRANGVLMGHLEGITFID 237 (408)
Q Consensus 172 ~------~~~~~---~~~~~~~~v~~l~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~ 237 (408)
. |.++. .+. ....|..+...+ .++.+++..+.+|.++-..+...... +.....+..+ +.+..+.
T Consensus 75 ~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~ 152 (307)
T 1zi0_A 75 EATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVD 152 (307)
T ss_dssp CCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEE
T ss_pred CCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEE
Confidence 2 22221 122 234566654421 34567888999999999876532221 2222223333 5555555
Q ss_pred ecCCCCeEEEeecCCeEEEEeCCCCcCccccccccccccccceeecccccceeeccCCCcceeeeecccceeeEEEEEee
Q 015371 238 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 317 (408)
Q Consensus 238 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
...+...++..+.+|.+..++........... .+.....+.... .+....
T Consensus 153 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a-------------------------~Gv~~i~L~~~d---~Vv~~~-- 202 (307)
T 1zi0_A 153 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT-------------------------TGVRGIRLGEGD---KVVSLI-- 202 (307)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTC-------------------------CCEECCCCCTTC---CEEEEE--
T ss_pred EeCCCCEEEEECCCCcEEEEEHHHcCccCCCC-------------------------CCeEeEEeCCCC---EEEEEE--
Confidence 54455567778888988888765522111000 000111111111 111111
Q ss_pred ccccCCCcEEEEeeCCCeEEEEECCCCc---------eeEEEccCCCCeeeeeEeCCCCeEEeecCCCcEEEEeeCCC
Q 015371 318 PEYSTAQKYIYTGSSDNSVYIYDLVSGA---------QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 386 (408)
Q Consensus 318 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 386 (408)
.. +++..+++.+..|.++-.++.... ....+..-.+.+-.+....+...++..+.+|.+.-.++...
T Consensus 203 -~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 203 -VP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp -CC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred -Ee-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 11 234578888999998888773211 11122222245544444333444555667777777776553
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.06 E-value=62 Score=26.51 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=72.0
Q ss_pred ceEEEEEcC---CCCEEEEEecCCeEEEEECCCCcc-------eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEe
Q 015371 143 GIFSVKFST---DGQELVAAGSDNFIYVYDLQANKC-------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 212 (408)
Q Consensus 143 ~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd 212 (408)
.|..+..-+ +...++..+.+|.++...+..... ...++. ...+..+... .....++..+..|.+..+.
T Consensus 96 ~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~-~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 96 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLC-SAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEE-CTTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEe-cCCCEEEEEECCCeEEEEE
Confidence 355443333 577899999999999988754221 122333 3455555555 4455677778889887776
Q ss_pred cc--ccccCC-----ccceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 213 RR--CFISKG-----RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 213 ~~--~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
.. .....+ .....+. ....|.++...+++..++..+..|.++.-.+...
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 54 211111 1111222 3456777766666778889999999988877653
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.60 E-value=26 Score=31.27 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=38.2
Q ss_pred eccccCCCcEEEEeeC------------CCeEEEEECCCCceeEEEccC-CCCeeeeeEeCCCCeEEee
Q 015371 317 SPEYSTAQKYIYTGSS------------DNSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISS 372 (408)
Q Consensus 317 ~~~~s~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 372 (408)
.+.|+++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+.+
T Consensus 480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3457777877663321 226777887778766666543 3568999999999977665
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=60.44 E-value=27 Score=31.45 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=36.2
Q ss_pred eeEEEEcCCCCeEEEEeCC------------CcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEe
Q 015371 43 VYTSQFSNDGSFFVAASQE------------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA 103 (408)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 103 (408)
.--|+|+|+|.+++.-..+ ..+.+.+..+++ +..+.... ....++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-EEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe-EEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 3568999999866654321 124444444443 33333322 34579999999999888765
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.00 E-value=1.2e+02 Score=28.69 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=29.3
Q ss_pred ceeeEecCC--ccEEEeecCceEEEEEEecCceee-ec-------ccCceeEEEEcCCC-CeEEEEe
Q 015371 4 GREVNYSGR--GRFSAADSCHVLSRYLPVNGPWKV-DG-------MNSRVYTSQFSNDG-SFFVAAS 59 (408)
Q Consensus 4 ~~~~~~s~d--g~~~~~~~~~~~~~~~~~~~~~~l-~~-------h~~~v~~~~~s~~~-~~l~t~~ 59 (408)
..+|++.|. +.+.+......+++..+....++. .. ....|.+|+++|.. ..+..+.
T Consensus 17 i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 17 ITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp EEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 456788875 344444434445554444433322 11 12469999999843 3444443
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.58 E-value=81 Score=26.40 Aligned_cols=212 Identities=10% Similarity=0.050 Sum_probs=110.4
Q ss_pred cCceeEEEEcCCCCeEEEEeCCCcEEEEEcCC---------CeeEEEecccccceeeEEEEE-eC--CCCceEEEeecCc
Q 015371 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDK---------NWKIQKDIETKALRWTITDTS-LS--PDQRFLVYASICA 107 (408)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~---------~~~~~~~~~~~~~~~~v~~~~-~~--~~~~~l~~~~~dg 107 (408)
.+.+..+........|+..+..|.++-+.... +..+...+..... ..|.++. .. .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESG-ERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTT-CCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCC-CEEEEEEEeccCCCCcEEEEEeCCC
Confidence 34555555555566677777788766555321 1111111122222 2454443 32 2456899999999
Q ss_pred EEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc---------eee
Q 015371 108 IVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC---------SLR 178 (408)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~ 178 (408)
.++...+..-..... .....+.+ .. ...+..+........++..+..|.+..++...-.. ...
T Consensus 124 ~vKrt~l~e~~~~~~---~G~~ai~L----~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~ 195 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLA---RGKIAINL----DE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR 195 (370)
T ss_dssp EEEEEEGGGGCSCCT---TCEESSCC----CT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC
T ss_pred eEEEeEHHHhhcccC---CceEEEEe----CC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE
Confidence 999888754322110 01111111 11 12355555555556788888899888887543211 111
Q ss_pred ecCcCCCceEEEEecC----------------------------------CCCEEEEecCCCeEEEEeccccccCCc---
Q 015371 179 IPAHKSDVNTVCFADE----------------------------------TGHLIFSGSDDSLCKVWDRRCFISKGR--- 221 (408)
Q Consensus 179 ~~~~~~~v~~l~~~~~----------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 221 (408)
+. ....|.++...+. ++..+++.+..|..+...+......+.
T Consensus 196 L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~k 274 (370)
T 3l6v_A 196 LA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQ 274 (370)
T ss_dssp CC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSC
T ss_pred eC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCc
Confidence 22 2345666655521 445788999999999888653222221
Q ss_pred --cceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 222 --ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 222 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
....+....+.+..+.+..+...++..+..|.+.-..+..
T Consensus 275 Gv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 275 GVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred ceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 1122222334555554444445566666677766665544
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.55 E-value=66 Score=28.81 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=38.4
Q ss_pred CceeEEEEcCCCCeEEEEeC------------CCcEEEEEcCCCeeEEEecccccceeeEEEEEeCCCCceEEEee
Q 015371 41 SRVYTSQFSNDGSFFVAASQ------------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (408)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 104 (408)
.....|.|.++|.+.+.... ...+..++..+++ +..+.... ....++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-l~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-EEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCe-EEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 44667999999987773321 1145555555553 33333211 123689999999999888764
No 378
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=56.72 E-value=90 Score=28.67 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=43.5
Q ss_pred ceeEEEEc----CCC---CeEEEEeCCCcEEEE-EcCCCeeEEEecccccceeeEEEEEeCCCC--ceEEEeecCcEEEE
Q 015371 42 RVYTSQFS----NDG---SFFVAASQESNIKVY-NVDKNWKIQKDIETKALRWTITDTSLSPDQ--RFLVYASICAIVNI 111 (408)
Q Consensus 42 ~v~~~~~s----~~~---~~l~t~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~ 111 (408)
..++|+.. .++ ..+..|+.+|.|.-. .......+...........+|..|.++++. .+|++++..+.+++
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 46777763 344 367788999987543 333332332222222334578899999987 88988887765554
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.94 E-value=22 Score=32.76 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=27.4
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEEEcCCCeeEEEe
Q 015371 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (408)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 78 (408)
.|.++.+ +..+|++-+.|.++|+|++.++..+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4565554 4679999999999999999998766543
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.71 E-value=81 Score=29.19 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEECCCCcceeeec
Q 015371 143 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 180 (408)
Q Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 180 (408)
.|.++.+ +..++++-+.|..+++|++++++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4555554 46799999999999999999998776653
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=52.31 E-value=48 Score=29.50 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=43.7
Q ss_pred CceeEEEEcCCC--CeEEEEeCCCcEEEEEcCCCe---eEEEecccccceeeEE-EEEeCCCCceEEEeecCcEEEE
Q 015371 41 SRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNW---KIQKDIETKALRWTIT-DTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 41 ~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
...++|+....+ ..+..|+.+|.|.-..+.... .+...........+|. .|.++++..+|++++..+.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 346677766544 456778899987666554321 1222222222234775 8999999999999887665544
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=50.48 E-value=99 Score=24.99 Aligned_cols=204 Identities=10% Similarity=0.023 Sum_probs=102.2
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCeeEEE------ecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceeeee
Q 015371 50 NDGSFFVAASQESNIKVYNVDKNWKIQK------DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (408)
Q Consensus 50 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (408)
|+..++++.+.+|.|+--.+.+-..... ........ .+..+........|+..+..|.+.-+....-.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D-~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~--~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED-FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE--AT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------C-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--CC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC-EEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC--CC
Confidence 4566788889999888776644211110 00111111 333333333445566666677765555422100 00
Q ss_pred eeeeeeeeeee-cCCCCCccceEEEEEc---CCCCEEEEEecCCeEEEEECCCCc-------ceeeecCcCCCceEEEEe
Q 015371 124 NVTIHKGLDFS-ADGDEDEFGIFSVKFS---TDGQELVAAGSDNFIYVYDLQANK-------CSLRIPAHKSDVNTVCFA 192 (408)
Q Consensus 124 ~~~~~~~~~~~-~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~l~~~ 192 (408)
. ...+.... ...-.....|..+... .++.+++..+..|.++...+..-. ....+..+ ..+..+...
T Consensus 78 ~--~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~ 154 (307)
T 1zi0_A 78 R--GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLT 154 (307)
T ss_dssp S--SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEE
T ss_pred C--CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEe
Confidence 0 00111000 0000111235555332 345678889999999998764221 11223333 556666555
Q ss_pred cCCCCEEEEecCCCeEEEEeccccccCCc-----cceeeecccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 193 DETGHLIFSGSDDSLCKVWDRRCFISKGR-----ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
.+...++..+.+|.+..++.......+. ....+. ....|.++...+++..+++.+..|.++-.++..
T Consensus 155 -~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 155 -SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp -CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred -CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 4455677778888888777542211111 111222 235566666555566788888889888877654
No 383
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.06 E-value=1.2e+02 Score=25.43 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=89.9
Q ss_pred eCCCCceEEEeecCcEEEEEECCCCceeeeeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECC-
Q 015371 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ- 171 (408)
Q Consensus 93 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 171 (408)
+-|+..++++.+.+|.|+--.+..-...... -.......+ .....+..+........|+..+..|.++-+...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~-g~g~~~~~l-----ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~e 76 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRG-GRGRSAAST-----KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQ 76 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCC-CCCSEEEEC-----SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccC-CCCceeccc-----CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHH
Confidence 4577889999999999987655321110000 000000000 011245556555566677777788887766532
Q ss_pred --C------Ccceee---ecCcCCCceEEEEec--CCCCEEEEecCCCeEEEEecccccc---CCccceeeecccCCeEE
Q 015371 172 --A------NKCSLR---IPAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEGITF 235 (408)
Q Consensus 172 --~------~~~~~~---~~~~~~~v~~l~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~ 235 (408)
. |.++.. +. ....|.++.... ..+.+|+.++..|.++...+..... .+.....+.. .+.+..
T Consensus 77 ip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~ 154 (370)
T 3l6v_A 77 LPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVG 154 (370)
T ss_dssp SCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEE
T ss_pred CcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEE
Confidence 1 222221 22 234566654432 2356899999999999988754322 2222223333 345555
Q ss_pred EEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 236 IDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 236 ~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+........++..+.+|.+..++...
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCceEEEEeCCCeEEEEEccc
Confidence 55555556778888889888887655
No 384
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=41.82 E-value=1.8e+02 Score=25.53 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=38.2
Q ss_pred cEEEEeeCCCeEEEEECC-CC-------ceeEEEcc--CCCCeeeeeEeCCCCeEEeecCCCcEEE
Q 015371 325 KYIYTGSSDNSVYIYDLV-SG-------AQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~-~~-------~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
..++.|+.+|.|.-.-+. .+ ..+.+++. ...+|..|.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 467889999986544332 21 12334432 3578999999999999999988876665
No 385
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=38.65 E-value=79 Score=27.75 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=41.9
Q ss_pred ceeEEEEcC----CC--CeEEEEeCCCcEEEEEcCCCe-------eEEEecccccceeeEEEEEeCCCCceEEEeecCcE
Q 015371 42 RVYTSQFSN----DG--SFFVAASQESNIKVYNVDKNW-------KIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (408)
Q Consensus 42 ~v~~~~~s~----~~--~~l~t~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 108 (408)
..++|+... ++ ..+..|+.+|.|.-.-+.... .+...+.......+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666643 24 346678889987554433221 11111122222358999999999999999998876
Q ss_pred EEE
Q 015371 109 VNI 111 (408)
Q Consensus 109 i~~ 111 (408)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 386
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=38.39 E-value=1.4e+02 Score=26.90 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=38.0
Q ss_pred cEEEEeeCCCeEEEEECC-CC----c-eeEEEc--cCCCCeeeeeEeCCCCeEEeecCCCcEEE
Q 015371 325 KYIYTGSSDNSVYIYDLV-SG----A-QVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~-~~----~-~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
..+..|+.+|.|.-.-+. .+ . .+.+++ ....+|..+.++++...|..++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467889999987643332 22 1 123333 24568999999999889988888876665
No 387
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=33.11 E-value=91 Score=27.74 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=39.5
Q ss_pred CCcEEEEeeCCCeEEEEECCCC----ceeEEEc--cCCCCee-eeeEeCCCCeEEeecCCCcEEE
Q 015371 323 AQKYIYTGSSDNSVYIYDLVSG----AQVAKLD--FHNAPVR-DCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~--~~~~~v~-~~~~~~~~~~l~s~~~dg~v~i 380 (408)
+-..++.|+.+|.|.-..+... ..+.++. ....+|. .|.++++...|+.++.++.++|
T Consensus 412 ~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 412 GYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp TEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred CeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3457888999998765544322 1233332 2246785 8999999999999988876665
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=31.15 E-value=1.3e+02 Score=27.54 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=35.5
Q ss_pred eEEEEeCCCcEE-EEEcCCC------eeEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 54 FFVAASQESNIK-VYNVDKN------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 54 ~l~t~~~dg~i~-iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
.+..|+.+|.|. +...... ..+...........+|..|.++++.+.|.+++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466788888874 3222211 111112222233457899999999999999998876654
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.57 E-value=2.1e+02 Score=22.31 Aligned_cols=105 Identities=6% Similarity=0.002 Sum_probs=56.7
Q ss_pred EEEEEecCCeEEEEECCCCcc-eeeecCcCCCceEEEEecCCCCEEEEecCCCeEEEEecccc---ccCCccce---eee
Q 015371 155 ELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF---ISKGRANG---VLM 227 (408)
Q Consensus 155 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~---~~~ 227 (408)
..++.+.+|.|+--....... ...++. ...+..+... ...+.|+..+..|.++-+..... ...+.++. .+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~-~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKG-KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEE-ETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 355567778777666543211 112333 3344444444 23444555667787666654321 11222111 122
Q ss_pred cccCCeEEEEecCCCCeEEEeecCCeEEEEeCCCC
Q 015371 228 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 262 (408)
Q Consensus 228 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 262 (408)
....|.++....++.+|+.++..|.++...+...
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 2456776655445667888899999999887663
No 390
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=27.61 E-value=2.7e+02 Score=23.35 Aligned_cols=51 Identities=6% Similarity=-0.037 Sum_probs=31.1
Q ss_pred CCCcEEEEeeCCCeEEEEECCC-C---ceeEEEc-c-CCCCeeeeeEeCCCCeEEee
Q 015371 322 TAQKYIYTGSSDNSVYIYDLVS-G---AQVAKLD-F-HNAPVRDCCWHPIYPMLISS 372 (408)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~-~---~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~ 372 (408)
.+|.++++--..+.|..|+..+ . +....+. . .-..+..+.+.+++.+.+.+
T Consensus 285 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 285 KTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 4577777777888999999865 1 2223332 1 12246677777777654444
No 391
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=26.52 E-value=4e+02 Score=24.94 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=37.3
Q ss_pred cccCceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeEEEecccc-----c----ceeeEEEEEeCC-CCceEEEe
Q 015371 38 GMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETK-----A----LRWTITDTSLSP-DQRFLVYA 103 (408)
Q Consensus 38 ~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-----~----~~~~v~~~~~~~-~~~~l~~~ 103 (408)
+-.+.|.+|+++|.+ ..+..+...|.|...+ +.++.-....... . ....+.++++.| +.+.++++
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 346789999999976 5566666666554443 3333333322211 0 123589999998 34444443
No 392
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=26.20 E-value=2.3e+02 Score=25.57 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=36.1
Q ss_pred CeEEEEeCCCcEEEEEcCCCe-----eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEE
Q 015371 53 SFFVAASQESNIKVYNVDKNW-----KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 53 ~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
..+..|+.+|.|.-.-..... .............+|..|.++++...|.+++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 356678888887644333211 11111221123347899999999999999887766654
No 393
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.01 E-value=4.4e+02 Score=24.52 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=35.8
Q ss_pred CceeEEEEcCCC-CeEEEEeCCCcEEEEEcCCCeeEEEeccccc----ceeeEEEEEeCC-CCceEEEee
Q 015371 41 SRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSP-DQRFLVYAS 104 (408)
Q Consensus 41 ~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~ 104 (408)
+.|..|+++|.. ..+..+...+.|..++ +.+..-..+..... ....|.+|++.| +.+.++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 389999999963 4556666566655554 23333333222111 123699999998 444555443
No 394
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.51 E-value=4.4e+02 Score=24.29 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=37.3
Q ss_pred cEEEEeeCCCeEE-EEECCCCc-------eeEEEc--cCCCCeeeeeEeCCCCeEEeecCCCcEEE
Q 015371 325 KYIYTGSSDNSVY-IYDLVSGA-------QVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 325 ~~l~~~~~dg~i~-vwd~~~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
..++.|+.+|.|. +....... .+.+++ ....+|..|.++++...|..++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4678899999864 33222211 222332 34668999999999999999988876665
No 395
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=23.20 E-value=2.2e+02 Score=26.28 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=41.2
Q ss_pred ceeEEEEcCCC--CeEEEEeCCCcEEEEEcCCC---eeEEEecccccceeeE-EEEEeCCCCceEEEeecCcEEEE
Q 015371 42 RVYTSQFSNDG--SFFVAASQESNIKVYNVDKN---WKIQKDIETKALRWTI-TDTSLSPDQRFLVYASICAIVNI 111 (408)
Q Consensus 42 ~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~~ 111 (408)
..++|+....+ ..+..|+.+|.|.-.-+... ..+...........+| ..|.++++...|++++..+.+++
T Consensus 400 ~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 400 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp CBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 35555555433 45667888998875544331 1222222122123366 68999999889988887766554
No 396
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.97 E-value=3.3e+02 Score=22.69 Aligned_cols=202 Identities=9% Similarity=0.063 Sum_probs=95.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCe----------eEEEecccccceeeEEEEEeCCCCceEEEeecCcEEEEEECCCCceee
Q 015371 52 GSFFVAASQESNIKVYNVDKNW----------KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (408)
Q Consensus 52 ~~~l~t~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (408)
....+.-..||.|+.|-..... ........ .....+..++.+......+.-..+|.|..|-.......-
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEccc-ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 3444555678888888643210 11111111 111235556666666666777789999999654321100
Q ss_pred eeeeeeeeeeeeecCCCCCccceEEEEEcCCCCEEEEEecCCeEEEEECCCCcc-----------eeeecC-cCCCceEE
Q 015371 122 LANVTIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-----------SLRIPA-HKSDVNTV 189 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~-~~~~v~~l 189 (408)
.............. ......|..++-. ....++-..+|.|+.|-....-. ...+.. ....|..+
T Consensus 141 ~g~~~~~~~p~~v~--~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~i 216 (389)
T 3kci_A 141 HGNRSPCDRPRVIE--SLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDI 216 (389)
T ss_dssp SSSCCCEEEEEECG--GGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CCCCccCcCCeEec--ccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEE
Confidence 00000000000000 0001135555543 34555666789999996532110 011111 12356666
Q ss_pred EEecCCCCEEEEecCCCeEEEEeccccccCC-------ccceeeec-ccCCeEEEEecCCCCeEEEeecCCeEEEEeCCC
Q 015371 190 CFADETGHLIFSGSDDSLCKVWDRRCFISKG-------RANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 261 (408)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 261 (408)
+.. ......++-..||.|..|-.......+ .....+.. ....|..++.. ..+.+....+|.|+.|-...
T Consensus 217 a~G-~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 217 ACG-SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEC-CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCG
T ss_pred EEc-CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCC
Confidence 654 223455666788999999643211100 00011111 11235555554 33445556789999997654
No 397
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.71 E-value=3.2e+02 Score=24.26 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred cEEEEeeCCCeEEEEECC---CCceeEEEc-cCCCCe-eeeeEeCCCCeEEeecCCCcEEE
Q 015371 325 KYIYTGSSDNSVYIYDLV---SGAQVAKLD-FHNAPV-RDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~---~~~~~~~~~-~~~~~v-~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
..+..|+.+|.|.-.-+. ....+..+. ....+| ..+.++++...|..++.++.+++
T Consensus 401 tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 401 TIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
No 398
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=20.04 E-value=3.2e+02 Score=25.21 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=38.4
Q ss_pred CcEEEEeeCCCeEEEEECCC-C---ceeEEEc--cCCCCe-eeeeEeCCCCeEEeecCCCcEEE
Q 015371 324 QKYIYTGSSDNSVYIYDLVS-G---AQVAKLD--FHNAPV-RDCCWHPIYPMLISSSWDCNIVR 380 (408)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~-~---~~~~~~~--~~~~~v-~~~~~~~~~~~l~s~~~dg~v~i 380 (408)
-..++.|+.+|.|.-.-+.. . ..+.++. ....+| ..+.++++...|+.++.++.+++
T Consensus 412 ~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 412 YSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 45678899999876544432 1 1233332 235576 68999998888888888877666
Done!