Query 015372
Match_columns 408
No_of_seqs 31 out of 33
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 05:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2913 Predicted membrane pro 93.6 1.1 2.3E-05 43.9 11.7 213 95-344 5-228 (260)
2 PF04193 PQ-loop: PQ loop repe 89.7 0.32 6.9E-06 36.0 2.7 48 282-330 3-50 (61)
3 PRK10644 arginine:agmatin anti 63.6 1.6E+02 0.0035 29.3 12.7 29 186-215 223-251 (445)
4 PRK11021 putative transporter; 53.8 2.3E+02 0.0049 27.9 12.1 110 265-382 289-399 (410)
5 smart00679 CTNS Repeated motif 53.2 13 0.00027 24.5 2.2 28 297-325 4-31 (32)
6 PF04193 PQ-loop: PQ loop repe 51.3 22 0.00047 26.2 3.4 43 109-157 12-54 (61)
7 PRK01061 Na(+)-translocating N 42.7 1.5E+02 0.0032 29.5 8.5 152 161-315 22-191 (244)
8 TIGR00951 2A43 Lysosomal Cysti 38.1 3.6E+02 0.0077 25.6 10.1 43 106-154 11-53 (220)
9 PF06570 DUF1129: Protein of u 37.1 3.4E+02 0.0073 25.0 10.8 30 239-268 166-195 (206)
10 PF06752 E_Pc_C: Enhancer of P 36.6 35 0.00076 33.6 3.2 46 23-69 134-179 (230)
11 TIGR00951 2A43 Lysosomal Cysti 36.5 41 0.00088 31.8 3.6 50 281-331 4-53 (220)
12 COG3952 Predicted membrane pro 28.3 27 0.00059 31.2 0.9 41 134-174 54-94 (113)
13 PF03083 MtN3_slv: Sugar efflu 27.5 70 0.0015 25.2 3.0 54 285-339 7-60 (87)
14 PF09622 DUF2391: Putative int 26.8 1.7E+02 0.0037 29.3 6.2 117 83-231 129-254 (267)
15 PF06729 CENP-R: Kinetochore c 26.2 38 0.00082 31.3 1.5 23 52-74 4-26 (139)
16 PRK11387 S-methylmethionine tr 23.8 6.2E+02 0.013 25.6 9.5 14 265-278 318-331 (471)
17 COG2056 Predicted permease [Ge 23.5 1.2E+02 0.0025 32.6 4.5 66 135-204 195-281 (444)
18 PF02652 Lactate_perm: L-lacta 23.2 1.5E+02 0.0032 31.8 5.3 50 216-269 203-253 (522)
19 TIGR03068 srtB_sig_NPQTN sorta 21.4 53 0.0011 24.0 1.1 32 306-337 1-32 (33)
No 1
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=93.58 E-value=1.1 Score=43.86 Aligned_cols=213 Identities=23% Similarity=0.283 Sum_probs=114.8
Q ss_pred hhhHHhhhhcccchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHHHhh-ccccceeEEeeeh-hh
Q 015372 95 WNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIK-KREKEAIVVQTLG-VV 172 (408)
Q Consensus 95 Wds~T~~l~~~a~iPFL~LqlPQIi~Na~nl~aGn~~AL~av~W~g~ltGLLGNLsLLSYFA~-KrE~~A~vVQ~vG-Vv 172 (408)
|+.+---++..+++=-.....|||++|++.=.+.--..++.+.|+. |...-+.|+-- ..+- ...+|++= .+
T Consensus 5 ~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wli------gdi~nl~g~~l~~~~~-~~~~~~~yy~~ 77 (260)
T KOG2913|consen 5 NDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLI------GDIFNLVGFFLQPLGS-TLKVQAVYYTL 77 (260)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHH------ccHHHHHHHHhcccch-hHHHHHHHHHH
Confidence 3444444444455445567789999999999999899999999973 33333333321 1111 12222221 12
Q ss_pred hhHHHHHHHHhhCCC-C-hhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhhhHHHHhhhccCCCCCC
Q 015372 173 STYVVISQLAVGEAM-P-MPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSI 250 (408)
Q Consensus 173 St~iVL~QLa~Ag~M-P-l~~F~~ts~~Va~GlvLn~l~y~g~l~~~lW~lWe~~i~igGlavlPQVmwsTf~P~iP~si 250 (408)
+..++++|..--+.. | -|.+...+ ...-.+|.-+++|---.-|-|. .+-
T Consensus 78 ~d~~l~~q~~yy~~~~~~~pll~~~s---------------------------~~s~~~~~~~~~~~~~~~~~~~--~~~ 128 (260)
T KOG2913|consen 78 ADSVLFVQCLYYGNIYPREPLLPVPS---------------------------FRSLLGGLEALLILSIKLFSPR--FVK 128 (260)
T ss_pred HHHHHHHHHHhcchhcccCccccccc---------------------------hhhhhcchHHHHHHHhhccCcc--hhh
Confidence 223333444332222 1 11111000 0001122334444333333332 233
Q ss_pred chhHH-HHHHHHHHHHHHHhcCCchhH------hhHHhhcchhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHH
Q 015372 251 LPGTI-AFVVGVATVVMARMGKLSKQG------VKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMI 323 (408)
Q Consensus 251 LPg~i-~~~~~~~~Vvmar~gkL~~k~------~~f~~~lSgWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmi 323 (408)
.|-.. ++...+.....+...+++.+. ..-.+...||...++.|+.+++|+.-|+. =.+-+|+|.+--+++++
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~-~~s~eGls~~~F~~~~~ 207 (260)
T KOG2913|consen 129 WPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHL-RKSTEGLSLLAFAFNSL 207 (260)
T ss_pred ccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhc-cCccchhHHHHHHHHHc
Confidence 33333 333333333343333333322 34578889999999999999999999984 57889999999999999
Q ss_pred hccccchhhhhhhhhhhhccc
Q 015372 324 GNGLLIPRALFIRDFMWFTGS 344 (408)
Q Consensus 324 GNgLMlPRALFiRD~mW~tGS 344 (408)
||.--++-.--.+..=|.-|+
T Consensus 208 ~n~~y~~s~~~~~n~~w~~~~ 228 (260)
T KOG2913|consen 208 GNTTYILSSYLVTNLPWLVDS 228 (260)
T ss_pred cccccccccccccCCcccccC
Confidence 998866653333334444433
No 2
>PF04193 PQ-loop: PQ loop repeat
Probab=89.65 E-value=0.32 Score=36.01 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=42.2
Q ss_pred hcchhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHHhccccch
Q 015372 282 AISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIP 330 (408)
Q Consensus 282 ~lSgWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmiGNgLMlP 330 (408)
..-||.++.+....-+.|+..|+-+ .+-+|+|..+.++..+||.+.+=
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~-ks~~glS~~~~~l~~~g~~~~~~ 50 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKR-KSTGGLSLWFLLLWLIGSILWVL 50 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHc-cccccccHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999 55599999999999999987543
No 3
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=63.56 E-value=1.6e+02 Score=29.27 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=20.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015372 186 AMPMPHFIAISVVVATGLVLNFLNYFNMLN 215 (408)
Q Consensus 186 ~MPl~~F~~ts~~Va~GlvLn~l~y~g~l~ 215 (408)
.+|.++.....++.++..+.+.. +.+.++
T Consensus 223 ~iPrai~~s~~i~~v~Y~l~~~~-~~~~~~ 251 (445)
T PRK10644 223 NVPIATIGGVLIAAVCYVLSSTA-IMGMIP 251 (445)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-HHhCCC
Confidence 56999998888877776666665 444443
No 4
>PRK11021 putative transporter; Provisional
Probab=53.79 E-value=2.3e+02 Score=27.87 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=52.1
Q ss_pred HHHHhcCCchhHhhHHhhcchhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHHhccccchhhh-hhhhhhhhcc
Q 015372 265 VMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRAL-FIRDFMWFTG 343 (408)
Q Consensus 265 vmar~gkL~~k~~~f~~~lSgWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmiGNgLMlPRAL-FiRD~mW~tG 343 (408)
.|+|.|.+|+...|-=+.-.=+.|.++..-..+.=...++....+++-+...+.....+--.+...=++ +.|+..
T Consensus 289 a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~---- 364 (410)
T PRK11021 289 SQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY---- 364 (410)
T ss_pred HHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 589999999877663322223334333222111111222222344444544444444444444333321 223321
Q ss_pred chhhHHhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 015372 344 SSWATLFYGYGNLVCLYCSNVISKEFFLAATAGLVSWIG 382 (408)
Q Consensus 344 S~W~~~~~GwG~l~~m~~~~~~s~~~F~a~t~gl~~~~g 382 (408)
..+.--|.+.|+++.-..+.+.+.......+.|.-
T Consensus 365 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (410)
T PRK11021 365 ----RPLAVLGCLLCLLLLVMLGWKMLYALIMLALLWLF 399 (410)
T ss_pred ----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 13455678888888766555555444333444443
No 5
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=53.19 E-value=13 Score=24.49 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCCccchhHHHHHHHHHhc
Q 015372 297 VSQMWTNFLNPDNIKGLSASSMLLAMIGN 325 (408)
Q Consensus 297 VaQmwtN~lnP~nl~GLS~~T~LLAmiGN 325 (408)
+.|++.|+-+= +.+|+|....++-.+|+
T Consensus 4 ~PQi~~~~~~k-s~~glS~~~~~l~~~G~ 31 (32)
T smart00679 4 LPQIIKNYRRK-STEGLSILFVLLWLLGD 31 (32)
T ss_pred hhHHHHHHHcC-CcCcCCHHHHHHHHhcC
Confidence 68999999776 88999999999999887
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=51.31 E-value=22 Score=26.24 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=27.5
Q ss_pred hhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHHHhh
Q 015372 109 PFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIK 157 (408)
Q Consensus 109 PFL~LqlPQIi~Na~nl~aGn~~AL~av~W~g~ltGLLGNLsLLSYFA~ 157 (408)
=..+..+|||++|.|+=-++. ++-.-.+-.+.||+..+.|.--
T Consensus 12 ~~~~~~lPQi~~~~k~ks~~g------lS~~~~~l~~~g~~~~~~~~~~ 54 (61)
T PF04193_consen 12 LWIISFLPQIIKNYKRKSTGG------LSLWFLLLWLIGSILWVLYSIL 54 (61)
T ss_pred HHHHHHHhHHHHHHHcccccc------ccHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999744433 3344445556677776666543
No 7
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=42.67 E-value=1.5e+02 Score=29.52 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=91.3
Q ss_pred cceeEEeeehhhhhHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHH------Hhhhch----hHHHHHHHHHHhhh
Q 015372 161 KEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNY------FNMLNA----GLWRFWEDVITVGG 230 (408)
Q Consensus 161 ~~A~vVQ~vGVvSt~iVL~QLa~Ag~MPl~~F~~ts~~Va~GlvLn~l~y------~g~l~~----~lW~lWe~~i~igG 230 (408)
.+.+.+|.+|+|+...|-.++.-+-.|=++...+..+..++...++ || +.|+++ --.+.=|-..-|.=
T Consensus 22 nN~vl~~~LG~Cp~LaVS~~~~~a~gMGlAvtfVl~~S~~i~~~l~--~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlv 99 (244)
T PRK01061 22 QNILLSNFLGMCSYLACSSRLSTANGLGMSVALVLTVTGSINWFVH--AFITGPGALTWLSPALANVNLSFLELIIFIVV 99 (244)
T ss_pred hhHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccchhhccccccccccchHHHHHHHHHHH
Confidence 4566789999999999888888777776666555554444444432 11 122221 11222233444444
Q ss_pred hhhhhHHHHhhhccCCCC-----CCchhHHH---HHHHHHHHHHHHhcCCchhHhhHHhhcchhhHHHHHHHhhHHHHHh
Q 015372 231 LTALPQVIWSTFVPTIPN-----SILPGTIA---FVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWT 302 (408)
Q Consensus 231 lavlPQVmwsTf~P~iP~-----siLPg~i~---~~~~~~~Vvmar~gkL~~k~~~f~~~lSgWTATLLFMwmPVaQmwt 302 (408)
++++=|+......-+.|. ++.-..|. .+++.+....++...+-+......+.=-|||-.++.| .-+.+...
T Consensus 100 IA~~Vq~vem~L~a~~p~Ly~aLGifLPLIttNCaVLG~al~~~~~~~~~~~S~~~Glg~GlGftLALvl~-a~iRErL~ 178 (244)
T PRK01061 100 IAAFTQILELLLEKVSRNLYLSLGIFLPLIAVNCAILGGVLFGITRNYPFIPMMIFSLGAGCGWWLAIVLF-ATIREKLA 178 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 565556553333222221 33333333 4555555556676666677777788888898877655 56888887
Q ss_pred hcCCCCCccchhH
Q 015372 303 NFLNPDNIKGLSA 315 (408)
Q Consensus 303 N~lnP~nl~GLS~ 315 (408)
+-.=|+..||+..
T Consensus 179 ~~~iP~~~~G~pI 191 (244)
T PRK01061 179 YSDVPKNLQGMGI 191 (244)
T ss_pred cCCCCccccchhH
Confidence 7667999999877
No 8
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=38.13 E-value=3.6e+02 Score=25.60 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=28.0
Q ss_pred cchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHH
Q 015372 106 ANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSY 154 (408)
Q Consensus 106 a~iPFL~LqlPQIi~Na~nl~aGn~~AL~av~W~g~ltGLLGNLsLLSY 154 (408)
..+.-.+...|||++|.++ ++..++ |=...+--++||...+.|
T Consensus 11 ~~~~~~~~~~PQi~~n~k~---ks~~Gl---S~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 11 YVAAWSISFYPQIIKNWRR---KSAEGL---SFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHhhHHHHHHhc---cccCCc---CHHHHHHHHHHHHHHHHH
Confidence 3445567889999999975 333333 333445567788777777
No 9
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.14 E-value=3.4e+02 Score=25.04 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=19.9
Q ss_pred HhhhccCCCCCCchhHHHHHHHHHHHHHHH
Q 015372 239 WSTFVPTIPNSILPGTIAFVVGVATVVMAR 268 (408)
Q Consensus 239 wsTf~P~iP~siLPg~i~~~~~~~~Vvmar 268 (408)
...+.|...|-.+|+.+..++++++.+..+
T Consensus 166 ~~~~lp~~inp~l~~~~~iiig~i~~~~~~ 195 (206)
T PF06570_consen 166 LTSFLPPVINPVLPPWVYIIIGVIAFALRF 195 (206)
T ss_pred HHHHccccCCcCCCHHHHHHHHHHHHHHHH
Confidence 445566555667888888777777665443
No 10
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=36.60 E-value=35 Score=33.65 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCCcccccCCCcccccccCCCccccCcccccccceeccccccccccc
Q 015372 23 YPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVS 69 (408)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrl~pv~ 69 (408)
-++|-++.|.||-...|.+-+.+. +.|+-++.-|-.-..|.+.||.
T Consensus 134 ~a~~~~t~Q~L~gnn~~l~vp~~~-~~v~~vsp~~~~h~pRtl~~vp 179 (230)
T PF06752_consen 134 TALCTSTTQVLIGNNIRLSVPSHL-STVNSVSPLNVRHNPRTLSPVP 179 (230)
T ss_pred ccCCCCCceecccCccccccCccc-ccccccccccccccccccCCCc
Confidence 467889999999999998887776 8899999999889999999887
No 11
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=36.49 E-value=41 Score=31.79 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=42.8
Q ss_pred hhcchhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHHhccccchh
Q 015372 281 RAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPR 331 (408)
Q Consensus 281 ~~lSgWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmiGNgLMlPR 331 (408)
...-||+....-+..-++|++.|+ .-.+.+|+|....++.++||....=-
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~-k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNW-RRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-hccccCCcCHHHHHHHHHHHHHHHHH
Confidence 446689999999999999999999 45788999999999999999765533
No 12
>COG3952 Predicted membrane protein [Function unknown]
Probab=28.32 E-value=27 Score=31.20 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=32.9
Q ss_pred hhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhh
Q 015372 134 LAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVST 174 (408)
Q Consensus 134 ~av~W~g~ltGLLGNLsLLSYFA~KrE~~A~vVQ~vGVvSt 174 (408)
.++|-.=--.++||-+++||||-.+++..-+.-|+.|....
T Consensus 54 sv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~ 94 (113)
T COG3952 54 SVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIY 94 (113)
T ss_pred CcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHH
Confidence 45555555689999999999999999998888888776543
No 13
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=27.47 E-value=70 Score=25.19 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=41.3
Q ss_pred hhhHHHHHHHhhHHHHHhhcCCCCCccchhHHHHHHHHHhccccchhhhhhhhhh
Q 015372 285 GWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFM 339 (408)
Q Consensus 285 gWTATLLFMwmPVaQmwtN~lnP~nl~GLS~~T~LLAmiGNgLMlPRALFiRD~m 339 (408)
|=.+++.++..|+.|+.+-.-+ .+-+++|....+...++|.+-+==.+.++|..
T Consensus 7 ~~~~~i~~~~spl~~i~~v~k~-ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~ 60 (87)
T PF03083_consen 7 ASVSSIIMFLSPLPQIRQVIKT-KSTGSVSFPPFLAMFFNCVLWLIYGILINDWP 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCccceehhHHHhhhccHhhhhhhhcCCee
Confidence 3356788999999999888776 67789998888888888777666666666653
No 14
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=26.76 E-value=1.7e+02 Score=29.26 Aligned_cols=117 Identities=21% Similarity=0.311 Sum_probs=70.6
Q ss_pred ccccCCchhhhhhhhHHhhhhcccchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHH-------H
Q 015372 83 SANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSY-------F 155 (408)
Q Consensus 83 ~~~~~~~~~~~~Wds~T~~l~~~a~iPFL~LqlPQIi~Na~nl~aGn~~AL~av~W~g~ltGLLGNLsLLSY-------F 155 (408)
|+++++..+...|+++.+.+.|+-.+.|=+.--=.++.=|.++-.=|.-++.+++ +..+| |
T Consensus 129 ~~~~~~~~~~~~~~Dl~q~~vGA~~lA~p~apTeEvw~lA~~ms~~~~l~l~~~s------------L~i~y~fvy~a~f 196 (267)
T PF09622_consen 129 EEEEEDKPERGYLADLGQMIVGALFLAFPFAPTEEVWLLAAKMSPWHALALVLLS------------LAIMYLFVYKAGF 196 (267)
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCHHHHHHHHHHH------------HHHHHHHHHhhcc
Confidence 3444557788899999999999998888777777788877776554444444332 22333 2
Q ss_pred h--hccccceeEEeeehhhhhHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhh
Q 015372 156 I--KKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGL 231 (408)
Q Consensus 156 A--~KrE~~A~vVQ~vGVvSt~iVL~QLa~Ag~MPl~~F~~ts~~Va~GlvLn~l~y~g~l~~~lW~lWe~~i~igGl 231 (408)
. +|||++.-+.|. ++-.+= .-| +.|++++. =.|-.|++++++-|..|=+.+-++|+
T Consensus 197 ~~~~~~~~~~g~~~~------~l~~ti---------vsY-~isl~vsl----~~L~~f~~~~~~~~~~~l~ativl~~ 254 (267)
T PF09622_consen 197 RGQHKREEQRGIFQR------FLRFTI---------VSY-LISLLVSL----LMLWFFGRLDGDPWSQWLKATIVLGL 254 (267)
T ss_pred CCccchhhccCccch------hHHHHH---------HHH-HHHHHHHH----HHHHHhcccCCCCHHHHHHHHHhhhh
Confidence 2 245555444432 211110 001 11222222 25567899988899999998888774
No 15
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=26.17 E-value=38 Score=31.27 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=19.3
Q ss_pred ccccceecccccccccccCCCCC
Q 015372 52 FISHYTLATLHRRLSPVSAGDSD 74 (408)
Q Consensus 52 ~~~~~~~~~~~rrl~pv~~~ds~ 74 (408)
.++-|+++|+|+++.|.++-.++
T Consensus 4 ~~~~yspttgt~q~sp~sSp~s~ 26 (139)
T PF06729_consen 4 SITSYSPTTGTCQMSPFSSPTSS 26 (139)
T ss_pred cccccCCCCCceeecCCCCCCcc
Confidence 46789999999999999887653
No 16
>PRK11387 S-methylmethionine transporter; Provisional
Probab=23.81 E-value=6.2e+02 Score=25.63 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=11.6
Q ss_pred HHHHhcCCchhHhh
Q 015372 265 VMARMGKLSKQGVK 278 (408)
Q Consensus 265 vmar~gkL~~k~~~ 278 (408)
.|||.|.+|+...|
T Consensus 318 a~ardg~lP~~f~~ 331 (471)
T PRK11387 318 SLSNEGTLPACFAR 331 (471)
T ss_pred HHHhcCCcCHHHHH
Confidence 59999999977655
No 17
>COG2056 Predicted permease [General function prediction only]
Probab=23.50 E-value=1.2e+02 Score=32.56 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=43.9
Q ss_pred hhchhHHHhhhhhhhhhHHHHhhccccceeEEe--------------------eehhhhhHHHHHHHH-hhCCCChhHHH
Q 015372 135 AVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQ--------------------TLGVVSTYVVISQLA-VGEAMPMPHFI 193 (408)
Q Consensus 135 av~W~g~ltGLLGNLsLLSYFA~KrE~~A~vVQ--------------------~vGVvSt~iVL~QLa-~Ag~MPl~~F~ 193 (408)
.+|=+||+.|||= -+.-.+.|.||-+-...+ .++++.+++ .|+. ..+.||+..+.
T Consensus 195 ~ip~lgMi~GLl~--ai~~~YrKpReY~~~~~~~~~~~~~~~~~~~~~~~~~alvaiv~af~--vQl~~~~~smilgal~ 270 (444)
T COG2056 195 WIPGLGMIVGLLL--AIFVSYRKPREYQTNEIEEAENAIEDYAALEEYKLALALVAIVVAFA--VQLLTFTDSMILGALA 270 (444)
T ss_pred HHHHHHHHHHHHH--HHHHhhcCCccccccccchhhhhhhhhcchhhHHHHHHHHHHHHHHH--HHHHhccccchHHHHH
Confidence 5677899888762 222235777876621111 256666654 5876 88999999998
Q ss_pred HHHHHHHHHHH
Q 015372 194 AISVVVATGLV 204 (408)
Q Consensus 194 ~ts~~Va~Glv 204 (408)
+..+++..|.+
T Consensus 271 gliv~~~~gv~ 281 (444)
T COG2056 271 GLIVFFLSGVI 281 (444)
T ss_pred HHHHHHHhcce
Confidence 87777776654
No 18
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=23.17 E-value=1.5e+02 Score=31.82 Aligned_cols=50 Identities=32% Similarity=0.607 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHhhhccCCCCCCchhHHHHHHHHHHHH-HHHh
Q 015372 216 AGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVV-MARM 269 (408)
Q Consensus 216 ~~lW~lWe~~i~igGlavlPQVmwsTf~P~iP~siLPg~i~~~~~~~~Vv-mar~ 269 (408)
++..+.|-..+-.|.....||..-+.|.- |+ +|+.+++++++...+ +.|.
T Consensus 203 k~~r~~~p~~L~~g~~~~~~~~~~a~~~g--pe--l~~i~g~l~~l~~~~~~~r~ 253 (522)
T PF02652_consen 203 KGVREVWPFALVAGLSFAIPQWLVANFLG--PE--LPGILGGLVGLAVLVLFLRF 253 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc--cchHHHHHHHHHHHHHHHHH
Confidence 56788999999888889999999888873 33 677887666666554 5665
No 19
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=21.44 E-value=53 Score=24.02 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=28.0
Q ss_pred CCCCccchhHHHHHHHHHhccccchhhhhhhh
Q 015372 306 NPDNIKGLSASSMLLAMIGNGLLIPRALFIRD 337 (408)
Q Consensus 306 nP~nl~GLS~~T~LLAmiGNgLMlPRALFiRD 337 (408)
||+.=.|--..+-+...++=.||+-|++|.|.
T Consensus 1 NPQTs~gtp~y~y~Ip~v~lflL~~~~i~~~~ 32 (33)
T TIGR03068 1 NPQTNAGTPAYIYAIPVASLALLIAITLFVRK 32 (33)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhcc
Confidence 78888888888888899998899999999984
Done!