BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015373
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
           (Glcalpha1- 3glc)
 pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
           (Glcalpha1-4glc)
          Length = 190

 Score = 32.3 bits (72), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 236 RSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI 295
           R+++  +K      N   + LYQT   + DS     Y + +     Y + L FAE+    
Sbjct: 40  RASDYGMKLPILRSNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEV--YF 94

Query: 296 TGVGQRVFDILINGDIAFQGVDVVKMSG 323
               Q+VFD+ +NG    + +D+    G
Sbjct: 95  AQSQQKVFDVRVNGHTVVKDLDIFDRVG 122


>pdb|2JWP|A Chain A, Malectin
          Length = 174

 Score = 32.3 bits (72), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 236 RSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI 295
           R+++  +K      N   + LYQT   + DS     Y + +     Y + L FAE+    
Sbjct: 36  RASDYGMKLPILRSNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEV--YF 90

Query: 296 TGVGQRVFDILINGDIAFQGVDVVKMSG 323
               Q+VFD+ +NG    + +D+    G
Sbjct: 91  AQSQQKVFDVRVNGHTVVKDLDIFDRVG 118


>pdb|1O6O|D Chain D, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
           Yeast Nsp1p. Second Crystal Form
 pdb|1O6O|E Chain E, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
           Yeast Nsp1p. Second Crystal Form
 pdb|1O6O|F Chain F, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
           Yeast Nsp1p. Second Crystal Form
          Length = 119

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQAS--KAPNFYPEALYQ 258
           G+ KP F      D    D    P  SFG  A++++ ++ S    S    P    E    
Sbjct: 14  GSSKPAFSFGAKPDEKKNDEVSKPAFSFGAKANEKKESDESKSAFSFGSKPTGKEEGDGA 73

Query: 259 TALVSTDSQPDLQYTMD 275
            A +S  ++P+ Q + D
Sbjct: 74  KAAISFGAKPEEQKSSD 90


>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
           Arabinopyranosidase
 pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
           Arabinopyranosidase
 pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
           With L- Arabinose
 pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
           With L- Arabinose
 pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
           With D- Galactose
 pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
           With D- Galactose
          Length = 614

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 312 AFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKT 371
           A  G++VV ++    T+     T+ VNG+T T    P  G+ A   ++EV  +    + T
Sbjct: 408 ASTGLNVVDVAYTNNTSSARTATLQVNGQTATTVSFPPTGASAGTVSVEV-SLSKGSANT 466

Query: 372 LPEEGSPPSSGL 383
           L   G P + G+
Sbjct: 467 LALSGGPATEGI 478


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,948,799
Number of Sequences: 62578
Number of extensions: 564534
Number of successful extensions: 1296
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 6
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)