Query 015373
Match_columns 408
No_of_seqs 194 out of 1237
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 1.3E-77 2.8E-82 639.2 40.4 371 8-378 4-376 (623)
2 PF12819 Malectin_like: Carboh 100.0 1.4E-67 3E-72 525.5 35.8 323 30-364 1-347 (347)
3 PF11721 Malectin: Di-glucose 99.9 5.3E-23 1.1E-27 186.0 7.9 152 195-359 2-174 (174)
4 PF11721 Malectin: Di-glucose 99.7 1.4E-16 3.1E-21 144.0 8.6 135 27-170 2-174 (174)
5 PLN03150 hypothetical protein; 99.4 1.7E-12 3.7E-17 139.2 15.6 147 27-177 193-364 (623)
6 PF12819 Malectin_like: Carboh 99.2 1.4E-10 2.9E-15 116.2 14.1 156 198-367 1-164 (347)
7 KOG3593 Predicted receptor-lik 98.0 3.2E-06 7E-11 80.2 3.6 108 252-364 106-228 (355)
8 KOG3593 Predicted receptor-lik 91.6 0.12 2.6E-06 49.7 2.4 97 26-131 60-164 (355)
9 PF03422 CBM_6: Carbohydrate b 67.0 70 0.0015 26.3 12.7 86 269-361 33-123 (125)
10 PRK06764 hypothetical protein; 31.2 48 0.001 26.2 2.6 17 85-101 74-90 (105)
11 PF03944 Endotoxin_C: delta en 27.8 3.9E+02 0.0085 22.9 11.4 80 91-176 48-143 (143)
12 PRK15222 putative pilin struct 26.9 4.2E+02 0.0091 23.5 7.9 13 113-125 123-135 (156)
13 PRK14758 hypothetical protein; 26.6 58 0.0013 19.8 1.8 17 3-19 6-22 (27)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-77 Score=639.18 Aligned_cols=371 Identities=77% Similarity=1.270 Sum_probs=317.6
Q ss_pred HHHHHHHHh--hhccccCCCceEEEccCCCCCCcCCCCCceeecCCCCcCCccccccCCCCCCCcceeeeeeCCCCCCCc
Q 015373 8 WLLVFCSAL--NSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPEN 85 (408)
Q Consensus 8 ~~~~~~~~~--~~~~a~~~~~~i~IdCG~~~~~~~d~~g~~w~~D~~~~~g~~~~~~~~~~~~~~y~T~R~F~~~~g~~~ 85 (408)
|||++|+.+ .++.++.++++++||||++++..+|.+||+|++|..++.|..+....++...++|+|+|+||.++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~ 83 (623)
T PLN03150 4 WLLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPEN 83 (623)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCccccccc
Confidence 444444444 334456788999999999987645568999999988766655544445445678999999997679999
Q ss_pred eEEEeecCCceEEEEEEEecccCCCCCCCCeEEEEECCeEEEEEecCCCCCCCcEEEEEEEEeeCCeEEEEEeeCCCCCc
Q 015373 86 CYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDP 165 (408)
Q Consensus 86 cY~~pv~~~g~ylVRl~F~~~nyd~~~~~~~Fdv~i~~~~w~tvl~~f~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~~p 165 (408)
||+||++++|+|+||+||+||+||+.+..|.|||++|++.|.+|+.+|+..+..++||++++++++.++|||++++.+.|
T Consensus 84 cY~~~~~~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~p 163 (623)
T PLN03150 84 CYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDP 163 (623)
T ss_pred ceEeeecCCCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCC
Confidence 99999999999999999999999998889999999999999999998876667799999999999999999999988999
Q ss_pred eEEEEEEEEcCCcccccCCCCcccceeeeeeeecCCCCCCCCCcCCCCCCCCCCccccCCCCCCCCCccccccccceecC
Q 015373 166 AILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQA 245 (408)
Q Consensus 166 fIsaIEl~~l~~~~y~~~~~~~~~~al~~~~Rin~Gg~~~~~~~~y~~D~~~~DR~W~~d~~~~~~~~~~ist~~~i~~~ 245 (408)
|||+||||++|+.+|..+++.+.+.+|++++|+||||.+..+.+||++|+|++||+|.+|+.|..+.+..+++...|+++
T Consensus 164 FIs~iEv~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~ 243 (623)
T PLN03150 164 AILSIEILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKA 243 (623)
T ss_pred ceeEEEEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccc
Confidence 99999999999999975532234678999999999998776679999999999999999987665556677777778766
Q ss_pred CCCCCCChHHHHHHhhhcCCCCCceEEEEEeCCCCcEEEEEEEeecccCcCCcceEEEEEEECCEEeecccceeeccCCc
Q 015373 246 SKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDR 325 (408)
Q Consensus 246 ~~~~~~~P~~Vy~TAr~~~~~~~~lty~~~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~~~~~~di~~~~g~~ 325 (408)
.+.++.+|+.||||||++.++..+++|.|++++++.|+|||||||++......++|+|+|+|||+.+++++|+...+|+.
T Consensus 244 ~~~~~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~ 323 (623)
T PLN03150 244 SNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGER 323 (623)
T ss_pred cCCCccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCc
Confidence 56677899999999999876556899999999999999999999997544567899999999999999999998888877
Q ss_pred eeEEEEEEEEEecCcEEEEEEeeCCCCCceeeEEEEEEeecCCCCCCCCcccc
Q 015373 326 YTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEGSP 378 (408)
Q Consensus 326 ~~~~~~~~~v~vs~~~L~I~f~p~~~s~p~lNaiEI~~~~~~~~~T~~~dv~a 378 (408)
+.++++++.+.++++.|+|+|+|..+++|+|||||||++.+.+.+|+++|+.|
T Consensus 324 ~~~~~~~~~v~~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~a 376 (623)
T PLN03150 324 YTALVLNKTVAVSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSA 376 (623)
T ss_pred ccceEEEeEEeecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHH
Confidence 78999998888777889999999988889999999999999877888877654
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=1.4e-67 Score=525.48 Aligned_cols=323 Identities=30% Similarity=0.490 Sum_probs=257.1
Q ss_pred EccCCCCCC---cCCCCCceeecCCCCc-CCccccccC-----CCCCCCcceeeeeeCCCCCCCceEEEeec--CCceEE
Q 015373 30 ISCGARQNI---HSPPTNTLWFKDFAYT-GGIPANATR-----PSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN 98 (408)
Q Consensus 30 IdCG~~~~~---~~d~~g~~w~~D~~~~-~g~~~~~~~-----~~~~~~~y~T~R~F~~~~g~~~cY~~pv~--~~g~yl 98 (408)
||||++.+. .++.+||+|++|..|+ +|.+..++. +....++|+|||+|| +|+|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799999763 3457899999999887 466555521 124568999999999 477899999987 456999
Q ss_pred EEEEEecccCCCCC-----CCCeEEEEECCeEEEEEecCCCCCCCcEEEEEEEEee-CCeEEEEEeeCCCCC-ceEEEEE
Q 015373 99 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE 171 (408)
Q Consensus 99 VRl~F~~~nyd~~~-----~~~~Fdv~i~~~~w~tvl~~f~~~~~~~~~E~i~~~~-~~~l~vcf~~~~~~~-pfIsaIE 171 (408)
|||||+|||||+++ .++.|||++|++.|.+|...- .....++||+++.+. ++.|+|||+|+++|. |||||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE 157 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE 157 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence 99999999999864 267899999999999998643 223569999888887 799999999999887 9999999
Q ss_pred EEEcCCcccccCCCCcccceeeeeeeecCCCCCCCCCcCCCCCCCCCCccccCCCCCCCCCcccccccccee-cCCCCCC
Q 015373 172 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN 250 (408)
Q Consensus 172 l~~l~~~~y~~~~~~~~~~al~~~~Rin~Gg~~~~~~~~y~~D~~~~DR~W~~d~~~~~~~~~~ist~~~i~-~~~~~~~ 250 (408)
||+||+.+|+... ...+.+|++++|+||||... .+||++|++ ||+|.+... ...|..+++..+++ ...++++
T Consensus 158 l~~lp~~ly~~~~-~~~s~~L~~~~R~n~G~~~~--~iryp~D~~--dR~W~~~~~--~~~~~~ist~~~i~~~~~~~~~ 230 (347)
T PF12819_consen 158 LRPLPDSLYPDTD-ANSSQALETVYRLNVGGSSS--FIRYPDDTY--DRIWQPYSS--SPGWSNISTTSNININSSNNPY 230 (347)
T ss_pred EEECCccceeccc-cCCCceeEEEEeecCCCccc--ccCCCCCcc--eeecccccc--CccccccccceeeecccCCccC
Confidence 9999999995321 13467899999999999753 389999998 999996521 35577787766665 3345677
Q ss_pred CChHHHHHHhhhcCCCC--CceEEEEEeCCCCcEEEEEEEeecccCcCCcceEEEEEEECCEEeecccceeeccCCceeE
Q 015373 251 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA 328 (408)
Q Consensus 251 ~~P~~Vy~TAr~~~~~~--~~lty~~~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~~~~~~di~~~~g~~~~~ 328 (408)
.+|.+||+||+++.+.+ .+++|.+ ++++..|+||||||||+......++|+|+|+|||+.+.+++... ..+....+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~-~~~~~~~~ 308 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPP-YLGADTVP 308 (347)
T ss_pred cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcc-cccCcceE
Confidence 89999999999987654 5788888 88889999999999998754566789999999999988755432 22222445
Q ss_pred EEEEEEEEecC-cEEEEEEeeCCCC--CceeeEEEEEEe
Q 015373 329 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI 364 (408)
Q Consensus 329 ~~~~~~v~vs~-~~L~I~f~p~~~s--~p~lNaiEI~~~ 364 (408)
++..+.+.+.+ +.++|+|+|+.++ +|||||+||||+
T Consensus 309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 56677766654 4799999999877 799999999986
No 3
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.88 E-value=5.3e-23 Score=185.99 Aligned_cols=152 Identities=28% Similarity=0.415 Sum_probs=94.4
Q ss_pred eeeecCCCCCCCCCcCCCCCCCCCCccccCCCCCCCCCcccccc---cc-ceecCCCCCCCChHHHHHHhhhcCCCCCce
Q 015373 195 ATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRST---ES-SIKQASKAPNFYPEALYQTALVSTDSQPDL 270 (408)
Q Consensus 195 ~~Rin~Gg~~~~~~~~y~~D~~~~DR~W~~d~~~~~~~~~~ist---~~-~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l 270 (408)
++||||||... .+.. +..|.+|+.+..+.+.-... .. ........++..++.||||+|.+.+ ++
T Consensus 2 ~~~IN~Gg~~~---~~~~------g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f 69 (174)
T PF11721_consen 2 VLRINAGGPAY---TDSS------GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SF 69 (174)
T ss_dssp EEEEEETSSSE---EETT------TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SE
T ss_pred EEEEECCCCcc---cCCC------CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ce
Confidence 58999999753 2322 67777776654333310000 00 0000011123357799999999754 69
Q ss_pred EEEEEeCCCCcEEEEEEEeecccCc----CCcceEEEEEEECCEEeecccceeeccCCceeEEEEEE-EEEecCcEEEEE
Q 015373 271 QYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTVT 345 (408)
Q Consensus 271 ty~~~v~~~~~Y~V~LhFaEi~~~~----~~~~~R~FdV~ing~~~~~~~di~~~~g~~~~~~~~~~-~v~vs~~~L~I~ 345 (408)
+|.+|+.++|.|.|+|||||++... ...++|+|||+|||++++++|||.+++|+..++.++.+ .+.+++|.|+|+
T Consensus 70 ~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~ 149 (174)
T PF11721_consen 70 SYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQ 149 (174)
T ss_dssp EEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETT
T ss_pred EEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEE
Confidence 9999966899999999999998532 33899999999999999999999999998665777766 788889999999
Q ss_pred Eee------------CCCCCceeeEE
Q 015373 346 LHP------------KGGSHAIINAI 359 (408)
Q Consensus 346 f~p------------~~~s~p~lNai 359 (408)
|.. ..+ .|+||||
T Consensus 150 f~~~~~~~~~i~~~~~~~-~p~IsaI 174 (174)
T PF11721_consen 150 FVWAGKGTLCIPFIGSYG-NPLISAI 174 (174)
T ss_dssp EEEE--SEEEEEEESSSS-SSSEEEE
T ss_pred EEecCCCcEEeeccccCC-CcEEeeC
Confidence 993 333 5899997
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.67 E-value=1.4e-16 Score=144.04 Aligned_cols=135 Identities=28% Similarity=0.429 Sum_probs=88.0
Q ss_pred eEEEccCCCCCCcCCCCCceeecCCCCcCCcccc----------ccC----CC-CCCCcceeeeeeCCCCCCCceEEEee
Q 015373 27 AMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN----------ATR----PS-FITPPLKTLRYFPLSEGPENCYIINR 91 (408)
Q Consensus 27 ~i~IdCG~~~~~~~d~~g~~w~~D~~~~~g~~~~----------~~~----~~-~~~~~y~T~R~F~~~~g~~~cY~~pv 91 (408)
.++||||++.. ++..|..|.+|..+..|...- ... +. ..+++|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 47899999875 456899999999887554300 000 10 12368999999664 48999998
Q ss_pred cCCceEEEEEEEecccCCC-----CCCCCeEEEEECCeEEEEEecCCCCC------CCcEEEEE-EEEeeCCeEEEEEee
Q 015373 92 VPKGHYNVRIFFGLVTLTS-----FDHEPLFDISVEGTQIYSLKSGWSDH------DDRAFAEA-LVFLRDGTVSICFHS 159 (408)
Q Consensus 92 ~~~g~ylVRl~F~~~nyd~-----~~~~~~Fdv~i~~~~w~tvl~~f~~~------~~~~~~E~-i~~~~~~~l~vcf~~ 159 (408)
.++|.|.|||||.+..+.. ..+.|.|||.++| .+|+.+|+.. ..++++++ -+.+.++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~ 152 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVW 152 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEE
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEe
Confidence 8899999999998876653 1468999999999 8899988752 22577777 456799999999995
Q ss_pred -----------CCCCCceEEEE
Q 015373 160 -----------TGHGDPAILSL 170 (408)
Q Consensus 160 -----------~~~~~pfIsaI 170 (408)
...+.|.||||
T Consensus 153 ~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 153 AGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp E--SEEEEEEESSSSSSSEEEE
T ss_pred cCCCcEEeeccccCCCcEEeeC
Confidence 44677999987
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=1.7e-12 Score=139.25 Aligned_cols=147 Identities=16% Similarity=0.277 Sum_probs=105.4
Q ss_pred eEEEccCCCCCC-----cCCCC--CceeecCCCCcCCc------cccccC----CC-CCCCcceeeeeeCCCCCCCceEE
Q 015373 27 AMRISCGARQNI-----HSPPT--NTLWFKDFAYTGGI------PANATR----PS-FITPPLKTLRYFPLSEGPENCYI 88 (408)
Q Consensus 27 ~i~IdCG~~~~~-----~~d~~--g~~w~~D~~~~~g~------~~~~~~----~~-~~~~~y~T~R~F~~~~g~~~cY~ 88 (408)
..+||||++... -+|.- .|.|.+|..|..+. ...+.. +. .+...|+|+|..... ....+|+
T Consensus 193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~ 271 (623)
T PLN03150 193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYT 271 (623)
T ss_pred EEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEE
Confidence 358999986421 12332 69999997764321 111211 11 133579999998742 2357999
Q ss_pred EeecCCceEEEEEEEecccCCC-CCCCCeEEEEECCeEEEEEecCCCC------CCCcEEEEEEEEeeCCeEEEEEeeCC
Q 015373 89 INRVPKGHYNVRIFFGLVTLTS-FDHEPLFDISVEGTQIYSLKSGWSD------HDDRAFAEALVFLRDGTVSICFHSTG 161 (408)
Q Consensus 89 ~pv~~~g~ylVRl~F~~~nyd~-~~~~~~Fdv~i~~~~w~tvl~~f~~------~~~~~~~E~i~~~~~~~l~vcf~~~~ 161 (408)
+++.++++|+|||||.+..... ....++|||+++| .++..+++. ...++++++.+.+.++.+.|+|+|..
T Consensus 272 ~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing---~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~ 348 (623)
T PLN03150 272 MDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLING---DTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKK 348 (623)
T ss_pred eecCCCCCEEEEEEEEeccCccCCCceEEEEEEECC---EEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCC
Confidence 9988999999999999875432 3467899999999 666666553 12468889888888889999999976
Q ss_pred CCCceEEEEEEEEcCC
Q 015373 162 HGDPAILSLEILQVDD 177 (408)
Q Consensus 162 ~~~pfIsaIEl~~l~~ 177 (408)
...|+||||||..+-.
T Consensus 349 ~s~pilNaiEI~~~~~ 364 (623)
T PLN03150 349 GTHAIINAIEVFEIIT 364 (623)
T ss_pred CCcceeeeeeeeeccc
Confidence 5569999999999875
No 6
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.23 E-value=1.4e-10 Score=116.17 Aligned_cols=156 Identities=24% Similarity=0.318 Sum_probs=102.3
Q ss_pred ecCCCCCCCCCcCCCCCCCCCCccccCCCCCCCCCccccccccceecCCCCCCCChHHHHHHhhhcCCCCCceEEEEEeC
Q 015373 198 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD 277 (408)
Q Consensus 198 in~Gg~~~~~~~~y~~D~~~~DR~W~~d~~~~~~~~~~ist~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~lty~~~v~ 277 (408)
||||+.... ..|.|+.- +|.|.+|..+...+. +..|....+.....+...|+|||...++. .-.|+|++.
T Consensus 1 IdCG~~~~~--s~y~D~~t--g~~~~~D~~~~~~g~-----~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~ 70 (347)
T PF12819_consen 1 IDCGSSSNS--SSYVDDST--GRTWVSDDDFIDTGK-----SGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT 70 (347)
T ss_pred CcCCCCCCC--cccccCCC--CcEEeCCCCcccCCC-----ccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence 799997542 22555444 899999886543211 12221001111124567899999987543 369999987
Q ss_pred --CCCcEEEEEEEeecccCcCC----cceEEEEEEECCEEeecccceeeccCCceeEEEEEEEEEec-CcEEEEEEeeCC
Q 015373 278 --PNRNYSIWLHFAEIDNTITG----VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG 350 (408)
Q Consensus 278 --~~~~Y~V~LhFaEi~~~~~~----~~~R~FdV~ing~~~~~~~di~~~~g~~~~~~~~~~~v~vs-~~~L~I~f~p~~ 350 (408)
+++.|+|||||.-....... ...-.|+++++...+. .+++.. .. ..++++++.+.+. ++.|.|.|.|+.
T Consensus 71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~-tV~~~~-~~--~~~~~~E~ii~v~~~~~l~vclv~~~ 146 (347)
T PF12819_consen 71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWS-TVNLSN-SP--SSPVVKEFIINVTWSDTLSVCLVPTG 146 (347)
T ss_pred CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeE-EEEecC-CC--cceEEEEEEEEEcCCCcEEEEEEeCC
Confidence 45699999999976532111 1234699999987653 233222 11 2468889888887 688999999998
Q ss_pred CC-CceeeEEEEEEeecC
Q 015373 351 GS-HAIINAIEVFEIIAV 367 (408)
Q Consensus 351 ~s-~p~lNaiEI~~~~~~ 367 (408)
.. .|+||||||..+.+.
T Consensus 147 ~g~~pFIsaiEl~~lp~~ 164 (347)
T PF12819_consen 147 SGTFPFISAIELRPLPDS 164 (347)
T ss_pred CCCCCceeEEEEEECCcc
Confidence 44 599999999999764
No 7
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.04 E-value=3.2e-06 Score=80.16 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=82.6
Q ss_pred ChHHHHHHhhhcCCCCCceEEEEEeCCCCcEEEEEEEeecccCcCCcceEEEEEEEC-CEEeecccceeeccCCcee--E
Q 015373 252 YPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYT--A 328 (408)
Q Consensus 252 ~P~~Vy~TAr~~~~~~~~lty~~~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~in-g~~~~~~~di~~~~g~~~~--~ 328 (408)
-...+|||+|.... .+.|..|.+..|.|-+.|.|||.+ .+..++.+|||.+| +..+.+++||+...|...+ +
T Consensus 106 ed~ily~ter~nee---tFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhD 180 (355)
T KOG3593|consen 106 EDIILYQTERYNEE---TFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHD 180 (355)
T ss_pred hhhhhhhhcccchh---hhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcCCCccccc
Confidence 35679999999754 578888888889999999999997 46789999999999 8899999999988874321 1
Q ss_pred EEEEEE-----------EE-ecCcEEEEEEeeCCCCCceeeEEEEEEe
Q 015373 329 LVLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI 364 (408)
Q Consensus 329 ~~~~~~-----------v~-vs~~~L~I~f~p~~~s~p~lNaiEI~~~ 364 (408)
.+.... +. .+.|+++|.|.+..-.+|.+||..|++-
T Consensus 181 e~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g 228 (355)
T KOG3593|consen 181 EIIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG 228 (355)
T ss_pred ceEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence 111111 11 2337899999987766799999887754
No 8
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=91.63 E-value=0.12 Score=49.71 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred ceEEEccCCCCCCcCCCCCceeecCCCCcC------Ccccccc-CC-CCCCCcceeeeeeCCCCCCCceEEEeecCCceE
Q 015373 26 FAMRISCGARQNIHSPPTNTLWFKDFAYTG------GIPANAT-RP-SFITPPLKTLRYFPLSEGPENCYIINRVPKGHY 97 (408)
Q Consensus 26 ~~i~IdCG~~~~~~~d~~g~~w~~D~~~~~------g~~~~~~-~~-~~~~~~y~T~R~F~~~~g~~~cY~~pv~~~g~y 97 (408)
-..-||||++.- +|..|+.|-.|..-.- |....+- .. .....+|+|+|+-.. .+.|..|++..|.|
T Consensus 60 vI~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdy 133 (355)
T KOG3593|consen 60 VIPAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDY 133 (355)
T ss_pred hhheeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCce
Confidence 346699999764 4678999999953211 2111111 11 123358999998654 57899999999999
Q ss_pred EEEEEEecccCCCCCCCCeEEEEECCeEEEEEec
Q 015373 98 NVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKS 131 (408)
Q Consensus 98 lVRl~F~~~nyd~~~~~~~Fdv~i~~~~w~tvl~ 131 (408)
-+-+-|..-.++. .+.-.|||.++-. .++..
T Consensus 134 alvlkfaevyF~~-~q~kvfdvrln~s--h~vVk 164 (355)
T KOG3593|consen 134 ALVLKFAEVYFKT-CQHKVFDVRLNCS--HCVVK 164 (355)
T ss_pred ehhhhHHHHHHHh-hhhhheeeeeccc--eeEEe
Confidence 9989997655542 3456799999932 45544
No 9
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=67.05 E-value=70 Score=26.28 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=51.9
Q ss_pred ceEEE-EEeCCCCcEEEEEEEeecccCcCCcceEEEEEEECC--EEeecccceeeccCCceeEEEEEEEEEecCcEEEEE
Q 015373 269 DLQYT-MDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILING--DIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVT 345 (408)
Q Consensus 269 ~lty~-~~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing--~~~~~~~di~~~~g~~~~~~~~~~~v~vs~~~L~I~ 345 (408)
.+.|. .++...|.|.+.+..+-.. +.+.++|++|| -.....+++.. +|+...-......+....|.-.|.
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a~~~------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~~G~h~i~ 105 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYANGG------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLPAGKHTIY 105 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEESS------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEESEEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEECCC------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeCCCeeEEE
Confidence 58888 8887789999999988632 22889999998 23455566644 444222122233444445666777
Q ss_pred EeeCCCC--CceeeEEEE
Q 015373 346 LHPKGGS--HAIINAIEV 361 (408)
Q Consensus 346 f~p~~~s--~p~lNaiEI 361 (408)
|....+. .+-|..|++
T Consensus 106 l~~~~~~~~~~niD~~~f 123 (125)
T PF03422_consen 106 LVFNGGDGWAFNIDYFQF 123 (125)
T ss_dssp EEESSSSSB-EEEEEEEE
T ss_pred EEEECCCCceEEeEEEEE
Confidence 7765543 234545444
No 10
>PRK06764 hypothetical protein; Provisional
Probab=31.21 E-value=48 Score=26.21 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.5
Q ss_pred ceEEEeecCCceEEEEE
Q 015373 85 NCYIINRVPKGHYNVRI 101 (408)
Q Consensus 85 ~cY~~pv~~~g~ylVRl 101 (408)
|.|++...++|+|.||.
T Consensus 74 nkyti~f~kpg~yvirv 90 (105)
T PRK06764 74 NKYTIRFSKPGKYVIRV 90 (105)
T ss_pred eeeEEEecCCccEEEEE
Confidence 68999989999999997
No 11
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=27.78 E-value=3.9e+02 Score=22.88 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=42.7
Q ss_pred ecCCceEEEEEEEecccCCCCCCCCeEEEEECCeEEE-EE--ecCCCCC-------CCcEEEEEE--EEeeCCe---EEE
Q 015373 91 RVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY-SL--KSGWSDH-------DDRAFAEAL--VFLRDGT---VSI 155 (408)
Q Consensus 91 v~~~g~ylVRl~F~~~nyd~~~~~~~Fdv~i~~~~w~-tv--l~~f~~~-------~~~~~~E~i--~~~~~~~---l~v 155 (408)
.....+|-||+.+.- +....+.+..++.... .+ ....+.. ...-+.|+. +....+. +.|
T Consensus 48 ~~~~~~YrIRiRYAs------~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i 121 (143)
T PF03944_consen 48 NSSSQKYRIRIRYAS------NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITI 121 (143)
T ss_dssp SSSTEEEEEEEEEEE------SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEE
T ss_pred CCCCceEEEEEEEEE------CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEE
Confidence 345679999999762 2345677777764332 22 2222221 123455543 2233333 556
Q ss_pred EEeeCCC-CCceEEEEEEEEcC
Q 015373 156 CFHSTGH-GDPAILSLEILQVD 176 (408)
Q Consensus 156 cf~~~~~-~~pfIsaIEl~~l~ 176 (408)
.+.+... +.=+|--||+.|+.
T Consensus 122 ~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 122 SIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEESSTTTS-EEEEEEEEEECT
T ss_pred EEEecCCCCeEEEEeEEEEeCC
Confidence 5555444 44569999999863
No 12
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=26.88 E-value=4.2e+02 Score=23.46 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.4
Q ss_pred CCCeEEEEECCeE
Q 015373 113 HEPLFDISVEGTQ 125 (408)
Q Consensus 113 ~~~~Fdv~i~~~~ 125 (408)
....|||.++|+.
T Consensus 123 ~~~~FdVv~DGnQ 135 (156)
T PRK15222 123 DNASFSVVVDGNQ 135 (156)
T ss_pred cceEEEEEEeCCE
Confidence 4578999999973
No 13
>PRK14758 hypothetical protein; Provisional
Probab=26.60 E-value=58 Score=19.82 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHhhhc
Q 015373 3 RFHFLWLLVFCSALNSS 19 (408)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (408)
||-++++++..+++.+.
T Consensus 6 rFEliLivlIlCalia~ 22 (27)
T PRK14758 6 RFEFILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777776655565544
Done!