BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015376
         (408 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94K75|RHON1_ARATH Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis
           thaliana GN=RHON1 PE=1 SV=1
          Length = 401

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 200/420 (47%), Positives = 254/420 (60%), Gaps = 35/420 (8%)

Query: 1   MSQAVHLTAKSPPGYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK 60
           MS   HLT+   PGY  S+ RC     VS R +A+  CSS  D       K G +K    
Sbjct: 3   MSGTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPN 56

Query: 61  GASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDE-SELLSSRNGPILSLSN 119
            +SF CRASSG YRRNPDFSR N++GYRG NRQ+  R+  D E S++LSSRNGP+ +LS+
Sbjct: 57  RSSFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSS 116

Query: 120 SPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESM--QGQRKESETVDSLLK 177
           SPKFQATS+PGPREKEIVELFRKVQ QLR RAAA++++K      +GQ KESETVDSLLK
Sbjct: 117 SPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLK 176

Query: 178 LLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHI--EDKSTSFFDSSSRARTESREPNVS 235
           LLRKHS EQ KR+ S  SS      Q E  G  +  +D++ +   S       +++ N S
Sbjct: 177 LLRKHSGEQSKRQVSKFSS------QGEVQGDTVDKQDRTGNLVTSG------NKDNNAS 224

Query: 236 SFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKR----E 291
           SFTRP S+FRR+SPV + +  P YSSE T +  S    +   KK ++E+H +P+     E
Sbjct: 225 SFTRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYE 284

Query: 292 SESEPELETEPEASFA----DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRV 347
            E EPE E+EP         D E+  E+S        D   +D VL  +  I+D      
Sbjct: 285 HEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLS 340

Query: 348 SEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 407
            ++    D DED ++ EE    DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct: 341 DDDESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400


>sp|Q8L4E7|BP73_ORYSJ SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73
           PE=1 SV=1
          Length = 375

 Score =  181 bits (459), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 223/399 (55%), Gaps = 42/399 (10%)

Query: 17  PSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYR-R 75
           P  GR LP      R +  +   S+    +L  +K+          S  C A+  ++R R
Sbjct: 5   PHPGRTLPAYHGDNRFLLGACFLSK--LPMLRPMKL----------SLVCSANPNNHRSR 52

Query: 76  NPDFSRQNRNG-YRGRNRQNEERD---SIDD-ESELLSSRNGPILSLSNSPKFQATSTPG 130
           + D +R  + G  R +++  +E+D   +ID+ +++++SS+NGP +SL+++ + QATS PG
Sbjct: 53  SSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSNSRPQATSVPG 112

Query: 131 PREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRK 190
            REKEIVELF++VQ QLR R   +E+KK E  + Q  E  +VDSLL LLRKHSV+Q ++ 
Sbjct: 113 EREKEIVELFKRVQAQLRARGKGKEEKKPEQAKAQ-GERGSVDSLLNLLRKHSVDQRRK- 170

Query: 191 SSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPV 250
             SG   + S++Q + +      +++S F  +   + E ++P+ ++F RPASNFRRRSPV
Sbjct: 171 --SGDEKEQSVDQTKRSNESGNKQNSSIFIKND-TQEEQKKPHPAAFKRPASNFRRRSPV 227

Query: 251 TQFKYQPVYSSEETENSISRLDSSGKGKKSSLE--IHTD-PKRESESEPELETEPEASFA 307
              K+QPV ++ + E  I+ ++ + +  K +LE    TD P   S  EP    EPE    
Sbjct: 228 PNVKFQPV-TNVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSL 286

Query: 308 DGEVYDEASDVESNVITDGSLYDEVL--ENEPNIIDDSVYRVSEEGESSDNDEDENKQEE 365
           D    D  SD E     D S  DE     +EP++   SV  +       D   D   +  
Sbjct: 287 DD--LDHISDDE----PDASDTDEPSGEYDEPSLQIPSVPII-------DESHDTTLKSS 333

Query: 366 IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404
           +   DLS LK+ ELR LAKSRG+KG+SKMKK  L+ELL+
Sbjct: 334 LGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLS 372


>sp|A9NHC6|RS2_ACHLI 30S ribosomal protein S2 OS=Acholeplasma laidlawii (strain PG-8A)
           GN=rpsB PE=3 SV=1
          Length = 342

 Score = 39.7 bits (91), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query: 370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELL 403
           DLS LK+ EL+ LAK++G++ +SK++KA L+E L
Sbjct: 307 DLSTLKVAELKELAKAKGIENYSKLRKAELVEAL 340


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.124    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,170,583
Number of Sequences: 539616
Number of extensions: 6364794
Number of successful extensions: 28229
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 952
Number of HSP's that attempted gapping in prelim test: 24411
Number of HSP's gapped (non-prelim): 3084
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (28.5 bits)