Query 015376
Match_columns 408
No_of_seqs 142 out of 262
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 11:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2out_A MU-like prophage flumu 98.2 8E-07 2.7E-11 77.5 5.0 39 368-406 86-124 (131)
2 2do1_A Nuclear protein HCC-1; 96.9 0.00086 3E-08 50.7 4.5 35 369-405 8-42 (55)
3 1h1j_S THO1 protein; SAP domai 96.8 0.0012 4.1E-08 49.2 4.2 35 369-405 3-37 (51)
4 1zrj_A E1B-55KDA-associated pr 96.6 0.0024 8.1E-08 47.5 4.3 35 369-405 8-42 (50)
5 2kvu_A MKL/myocardin-like prot 96.4 0.0035 1.2E-07 50.3 4.9 34 370-405 25-58 (75)
6 1jjr_A KU70, thyroid autoantig 95.6 0.0079 2.7E-07 53.2 3.9 38 366-405 56-93 (151)
7 2rnn_A E3 SUMO-protein ligase 95.2 0.014 4.7E-07 50.0 3.9 35 369-405 35-69 (114)
8 1jjr_A KU70, thyroid autoantig 95.2 0.0034 1.2E-07 55.6 0.0 37 367-405 111-147 (151)
9 1jey_A KU70; double-strand DNA 90.8 0.045 1.6E-06 55.5 0.0 37 367-405 569-605 (609)
10 2ld7_A Histone deacetylase com 87.4 1.4 4.7E-05 36.5 6.5 37 369-405 22-58 (94)
11 3skq_A Mitochondrial distribut 43.4 21 0.00071 34.0 4.2 34 370-404 143-176 (249)
12 1y02_A CARP2, FYVE-ring finger 38.8 16 0.00056 30.8 2.5 38 368-405 73-110 (120)
13 2hue_C Histone H4; mini beta s 31.6 39 0.0013 26.3 3.4 35 370-404 7-41 (84)
14 2w51_A Protein arMet; MANF, CD 26.2 11 0.00037 34.0 -0.7 37 369-405 106-142 (158)
15 2do5_A Splicing factor 3B subu 23.6 1.1E+02 0.0039 23.4 4.5 36 368-405 5-40 (58)
16 1id3_B Histone H4; nucleosome 22.8 58 0.002 26.5 3.0 36 369-404 24-59 (102)
17 2j1d_G DAAM1, disheveled-assoc 22.3 43 0.0015 33.2 2.6 15 168-182 434-448 (483)
18 1zbh_A 3'-5' exonuclease ERI1; 21.6 90 0.0031 28.6 4.4 36 367-404 22-57 (299)
19 2djv_A Methionyl-tRNA syntheta 21.6 95 0.0032 24.4 4.0 22 125-146 4-25 (79)
20 2cpg_A REPA protein, transcrip 20.8 95 0.0032 20.4 3.3 24 373-402 11-34 (45)
21 2kdx_A HYPA, hydrogenase/ureas 20.1 23 0.00079 28.8 0.1 27 18-44 72-99 (119)
No 1
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=98.24 E-value=8e-07 Score=77.55 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=36.7
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcC
Q 015376 368 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS 406 (408)
Q Consensus 368 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~s 406 (408)
..+|..|||+|||++++++||+++++|+|.|||++|...
T Consensus 86 ~~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~a 124 (131)
T 2out_A 86 STDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPA 124 (131)
T ss_dssp CCSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCSC
T ss_pred cCccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHHh
Confidence 478999999999999999999999999999999999764
No 2
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.94 E-value=0.00086 Score=50.69 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
.+|+.|||+|||++++.+|+.--. +|+|||+.|+.
T Consensus 8 ~~l~klkV~eLK~~L~~rGL~~~G--~KaeLieRL~~ 42 (55)
T 2do1_A 8 VELHKLKLAELKQECLARGLETKG--IKQDLIHRLQA 42 (55)
T ss_dssp CCTTTSCHHHHHHHHHHHTCCCCS--CHHHHHHHHHH
T ss_pred cCHHHCcHHHHHHHHHHcCCCCCC--cHHHHHHHHHH
Confidence 479999999999999999998633 79999999864
No 3
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=96.79 E-value=0.0012 Score=49.20 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
.+|+.|||+|||++++.+||.- +=+|+|||+.|..
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL~~--~G~KadLieRL~~ 37 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSV--GGLKNELVQRLIK 37 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCC--CSSHHHHHHHHHH
T ss_pred chHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence 4789999999999999999986 2359999999864
No 4
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.55 E-value=0.0024 Score=47.50 Aligned_cols=35 Identities=37% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
.+|+.|||+|||+.++.+||.- +=+|+|||+-|+.
T Consensus 8 ~~~~klkV~eLK~eLk~RgL~~--~G~Ka~Li~RL~~ 42 (50)
T 1zrj_A 8 MDVRRLKVNELREELQRRGLDT--RGLKAELAERLQA 42 (50)
T ss_dssp CCGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHH
T ss_pred CCHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence 5899999999999999999985 3359999999864
No 5
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=96.42 E-value=0.0035 Score=50.31 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
+|+.|||+|||++.+.+||.--+ +|+|||+.|+.
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG--~KaeLIeRL~~ 58 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSG--TKTELIERLRA 58 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCS--CHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHcCCCCCC--CHHHHHHHHHH
Confidence 89999999999999999998622 59999999964
No 6
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.63 E-value=0.0079 Score=53.21 Aligned_cols=38 Identities=34% Similarity=0.571 Sum_probs=34.0
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 366 IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 366 ~~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
...+.|..|||++||++++++||+. ..+|+|||+.|..
T Consensus 56 ~~~g~L~kltV~eLK~~l~~~gL~~--~GkKadLI~Ri~~ 93 (151)
T 1jjr_A 56 ISKGTLGKFTVPMLKEACRAYGLKS--GLKKQELLEALTK 93 (151)
T ss_dssp HHHTCTTSSCHHHHHHHHHHHTCCC--CSSSHHHHHHHHH
T ss_pred HHcCcHHhccHHHHHHHHHHcCCCC--cccHHHHHHHHHH
Confidence 3668999999999999999999984 7789999999965
No 7
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.014 Score=49.96 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
..|..|||+|||++++++|+.-.+ +|+|||+.|+.
T Consensus 35 ~~l~kLtVaELK~~cr~~GL~~sG--kKaeLi~RI~~ 69 (114)
T 2rnn_A 35 TLMELLKVSELKDICRSVSFPVSG--RKAVLQDLIRN 69 (114)
T ss_dssp HHHTTCCHHHHHHHHHHTTCCTTS--CHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHcCCCcCC--cHHHHHHHHHH
Confidence 468999999999999999998533 59999999853
No 8
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.19 E-value=0.0034 Score=55.56 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=0.0
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 367 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 367 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
..+.|+.|||++||++++.+|++ ...+|+|||+.|..
T Consensus 111 ~~g~l~klTV~~Lk~~l~~~gl~--~~GkKaeLieRi~~ 147 (151)
T 1jjr_A 111 SKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTK 147 (151)
T ss_dssp ---------------------------------------
T ss_pred hcCccccccHHHHHHHHHHcCCC--CCCcHHHHHHHHHH
Confidence 45789999999999999999987 47789999999865
No 9
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=90.76 E-value=0.045 Score=55.50 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=0.0
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 367 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 367 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
..+.|+.|||++||++++.+|++ +..||+|||+.|..
T Consensus 569 ~~g~l~~~tv~~Lk~~l~~~~~~--~~~kK~~li~~i~~ 605 (609)
T 1jey_A 569 SKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTK 605 (609)
T ss_dssp ---------------------------------------
T ss_pred HCCCchhccHHHHHHHHHHcCCC--CCCcHHHHHHHHHH
Confidence 45789999999999999999987 57899999999864
No 10
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=87.36 E-value=1.4 Score=36.47 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=34.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
-+|..|.+.-|+...+..+|.-...+.|.+|+.+++.
T Consensus 22 vdf~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~k 58 (94)
T 2ld7_A 22 VDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGC 58 (94)
T ss_dssp CCCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHH
T ss_pred cCHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999853
No 11
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=43.45 E-value=21 Score=33.96 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015376 370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404 (408)
Q Consensus 370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq 404 (408)
.+..|+++||+..|..+||.. ..+...+|...|+
T Consensus 143 GV~sLs~~ELr~AC~~RGm~~-~gls~e~LR~~L~ 176 (249)
T 3skq_A 143 GVESLSQEELYQACVSRGMKA-YGVSKEDLVDNLK 176 (249)
T ss_dssp CGGGSCHHHHHHHHHHTTCCC-TTCCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCC-CCCCHHHHHHHHH
Confidence 488999999999999999998 7799999998875
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.83 E-value=16 Score=30.82 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=34.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 368 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 368 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
...|-.|++..|+.....++|..-.-.-|.|||++|-.
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~ 110 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLG 110 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHh
Confidence 34678899999999999999999999999999999854
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=31.57 E-value=39 Score=26.34 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015376 370 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404 (408)
Q Consensus 370 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq 404 (408)
....++.+-++.||+..|++-+|..=+.+|.+.|.
T Consensus 7 ~~~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~ 41 (84)
T 2hue_C 7 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 41 (84)
T ss_dssp GCCSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHH
Confidence 45679999999999999999999999999988774
No 14
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=26.21 E-value=11 Score=34.01 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
.+|..|+|.|||.|-..+|+.-.+=.-|.|.|..|+.
T Consensus 106 ~Dl~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~e 142 (158)
T 2w51_A 106 VDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINE 142 (158)
T ss_dssp SSCCTTHHHHHHHHTTCCCTTCSSCHHHHTTC-----
T ss_pred CChhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 5899999999999999999999999999999998865
No 15
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.62 E-value=1.1e+02 Score=23.44 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=28.9
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015376 368 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG 405 (408)
Q Consensus 368 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq~ 405 (408)
...|..|+-+||++.-.++|-.= .=++.|||+-|+.
T Consensus 5 ~~~ygaW~~~ELQaKLaE~GAPi--~g~REElvdRLk~ 40 (58)
T 2do5_A 5 SSGYGAWAAQELQAKLAEIGAPI--QGNREELVERLQS 40 (58)
T ss_dssp CCCSCSSCHHHHHHHHHHHTCCC--CSCHHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHhCCcc--cccHHHHHHHHHH
Confidence 35789999999999999998652 1179999999864
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=22.81 E-value=58 Score=26.53 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015376 369 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404 (408)
Q Consensus 369 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq 404 (408)
..+..++.+-++.||+..|++-+|..=+.+|.++|.
T Consensus 24 ~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le 59 (102)
T 1id3_B 24 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLK 59 (102)
T ss_dssp CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHH
Confidence 356779999999999999999999999999988874
No 17
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=22.35 E-value=43 Score=33.19 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHhh
Q 015376 168 ESETVDSLLKLLRKH 182 (408)
Q Consensus 168 e~~tVDSLLkLLRKH 182 (408)
+.|.+|+||.-||.-
T Consensus 434 ~~g~~D~Ll~~Lr~g 448 (483)
T 2j1d_G 434 ESGEFDDLVSALRSG 448 (483)
T ss_dssp ---------------
T ss_pred ccccHHHHHHHHhCC
Confidence 668999999999873
No 18
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=21.65 E-value=90 Score=28.57 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=28.5
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015376 367 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 404 (408)
Q Consensus 367 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeALq 404 (408)
.++-+..|++.||++.++++||...+ .|..|.+.|+
T Consensus 22 ~~~~~~~m~~~~l~~~l~~~~l~~~g--~~~~l~~~l~ 57 (299)
T 1zbh_A 22 TNGCINRMSKEELRAKLSEFKLETRG--VKDVLKKRLK 57 (299)
T ss_dssp HHHHHHSCCHHHHHHHHHHTTCCCCS--CHHHHHHHHH
T ss_pred hhchhhhccHHHHHHHHHHcCCCCcc--cHHHHHHHHH
Confidence 34456799999999999999998644 6777777665
No 19
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.59 E-value=95 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.7
Q ss_pred cccCCCcchHHHHHHHHHHHHH
Q 015376 125 ATSTPGPREKEIVELFRKVQVQ 146 (408)
Q Consensus 125 ATs~PGpREKEIVELFrkVQAq 146 (408)
.|+.|++.+.++.+|+..|.+|
T Consensus 4 ~~~~~~~~~~~~~~l~~~V~~Q 25 (79)
T 2djv_A 4 GSSGTTAKPQQIQALMDEVTKQ 25 (79)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHHHHH
Confidence 4688899999999999999987
No 20
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=20.81 E-value=95 Score=20.38 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 015376 373 ALKLPELRALAKSRGVKGFSKMKKAVLLEL 402 (408)
Q Consensus 373 ~MtvaELK~LAKe~GIKGySkMKKaELIeA 402 (408)
.-.+.+|.++|+..|+ .|++||..
T Consensus 11 ~~l~~~Ld~~a~~~g~------srS~~ir~ 34 (45)
T 2cpg_A 11 ESVLENLEKMAREMGL------SKSAMISV 34 (45)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc------CHHHHHHH
Confidence 3457899999999985 58888873
No 21
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.05 E-value=23 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.5
Q ss_pred CCCccccCCCccCceeeee-ecCCCCcc
Q 015376 18 SEGRCLPCMGVSGRAVAVS-SCSSRGDF 44 (408)
Q Consensus 18 s~gr~l~csgvs~r~~av~-~css~~~~ 44 (408)
...+|..|.-...-..... .|+.||.+
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 4578999987766566677 89999865
Done!