Query 015377
Match_columns 408
No_of_seqs 141 out of 1871
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.4E-42 2.9E-46 334.2 30.3 359 1-397 81-477 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.6E-26 5.4E-31 223.1 25.3 331 1-383 88-434 (451)
3 3o7q_A L-fucose-proton symport 99.9 8.7E-24 3E-28 203.2 33.8 305 1-376 87-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 5.5E-23 1.9E-27 200.7 19.0 357 2-389 82-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.9E-21 6.6E-26 183.0 13.4 287 1-359 61-353 (375)
6 2cfq_A Lactose permease; trans 99.8 3.9E-20 1.3E-24 176.8 16.1 333 1-393 69-410 (417)
7 2xut_A Proton/peptide symporte 99.8 2.4E-19 8.3E-24 176.4 16.9 111 1-111 80-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4.6E-11 1.6E-15 114.6 20.2 142 247-388 66-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 6.1E-10 2.1E-14 106.3 20.8 111 246-356 64-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 3.5E-10 1.2E-14 109.9 19.1 141 246-386 57-200 (491)
11 2gfp_A EMRD, multidrug resista 99.1 5.8E-10 2E-14 104.3 13.3 143 247-389 39-181 (375)
12 2xut_A Proton/peptide symporte 99.1 4.4E-09 1.5E-13 103.0 17.7 137 248-384 59-200 (524)
13 4gc0_A D-xylose-proton symport 98.7 3.5E-07 1.2E-11 88.5 17.5 103 253-355 65-185 (491)
14 2cfq_A Lactose permease; trans 98.3 4.2E-07 1.4E-11 86.3 4.8 118 1-118 285-405 (417)
15 2g9p_A Antimicrobial peptide l 31.0 31 0.0011 16.9 1.7 14 263-276 3-16 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.4e-42 Score=334.18 Aligned_cols=359 Identities=21% Similarity=0.274 Sum_probs=252.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcc
Q 015377 1 MEEGRMSILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNR 61 (408)
Q Consensus 1 ~~gRr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~R 61 (408)
|.|||++++++.+++.+++++++ +++|+++++++|+++|+|.|+.. +...|++|++|+++|
T Consensus 81 r~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~r 160 (491)
T 4gc0_A 81 RFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR 160 (491)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence 57999999999999999999998 48899999999999999999874 567789999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhcc--------ccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHH
Q 015377 62 GKWMVVFSTFWTFGSVSEAALAWIVMP--------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNIL 133 (408)
Q Consensus 62 g~~~~~~~~~~~~G~~l~~~l~~~~~~--------~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l 133 (408)
|+..++.+.++..|.++++.+++.... .+.||+++.+..++.++.++..+++||||+||..|+|.||+++.+
T Consensus 161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l 240 (491)
T 4gc0_A 161 GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence 999999999999999999888776532 357999999999999998889999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHH
Q 015377 134 DKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY 213 (408)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
++.+..+..+ ++.. +.+. ..+ ..++..... ..+..+ +.........+.+...+
T Consensus 241 ~~~~~~~~~~---------------~~~~--~~~~----~~~---~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~ 293 (491)
T 4gc0_A 241 RKIMGNTLAT---------------QAVQ--EIKH----SLD---HGRKTGGRL-LMFGVG--VIVIGVMLSIFQQFVGI 293 (491)
T ss_dssp HHHHHHHHHH---------------HHHH--HHHH----HHH---HHHHHTTHH-HHSCCT--HHHHHHHHHHHHHHTCH
T ss_pred HHhcCCchhH---------------HHHH--HHHH----HHH---hhhhhhhHH-HHhccc--HHHHHHHHHHHHHHhhh
Confidence 9877543211 0000 0000 000 000000011 111111 11112222222222233
Q ss_pred HHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-
Q 015377 214 YGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT- 292 (408)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~- 292 (408)
+....+.+.+.... ............+.++..+++.++++++.||+|||+.++.+.....+.++.+..
T Consensus 294 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 294 NVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 33333333332111 112223344555667788899999999999999999998776666554443322
Q ss_pred --hh-hhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh------cchh
Q 015377 293 --LQ-SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS------CHQT 362 (408)
Q Consensus 293 --~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~------~~~~ 362 (408)
.. ...... ........+..+..++.|.+.+|+||+++|+++.|++++++++++++++.+.+.+.+. .+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11 112221 2222223334455678899999999999999999999999999999999888765432 2234
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 015377 363 AAILLLEALIVLSVVVILLIPFETKGKELVNTIDG 397 (408)
Q Consensus 363 ~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~ 397 (408)
..+.+++++++++.++.+++.||||||++||+++.
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 56788999999999999999999999999998764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.6e-26 Score=223.08 Aligned_cols=331 Identities=15% Similarity=0.210 Sum_probs=218.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHH
Q 015377 1 MEEGRMSILGGALVTFVAGLLSAF----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG 75 (408)
Q Consensus 1 ~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G 75 (408)
|.|||++++++.++..++.++.++ ++|++.++++|++.|++.|.. +....++.|++|+++|++.+++.+.+..+|
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 479999999999999999999999 999999999999999998875 456778999999999999999999999999
Q ss_pred HHHHHHHHhHhccccc-hHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377 76 SVSEAALAWIVMPILT-WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG 153 (408)
Q Consensus 76 ~~l~~~l~~~~~~~~~-Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 153 (408)
.++++.++..+.+..+ ||+.|++.++..++. ++..+++||+|+....+++.++ +
T Consensus 168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~- 223 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------------------K- 223 (451)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------------------C-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------------------c-
Confidence 9999999877667777 999999998877665 4556788999874311100000 0
Q ss_pred CCCcccccCCCCCccccccccccccccccccch--hhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 015377 154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS--FLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC 230 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (408)
+.+ +++ .+++ . ++ +...+. .+..++ ++.+ ......+.....+++...+.|....+.
T Consensus 224 ~~~-~~~---~~~~-----~-~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 282 (451)
T 1pw4_A 224 NDY-PDD---YNEK-----A-EQ----ELTAKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEV--- 282 (451)
T ss_dssp CC---------------------------CCTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTB---
T ss_pred ccc-ccc---chhh-----h-hc----ccccccchHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 000 000 0000 0 00 000001 122222 2222 222333333444455555555443211
Q ss_pred CcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhh--hhHHHHHHHHH
Q 015377 231 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTALLSG 305 (408)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~ 305 (408)
.+.+............++.+++.++.+++.||+ |||+.+..+..+.. +.+..+.... +..........
T Consensus 283 -------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (451)
T 1pw4_A 283 -------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355 (451)
T ss_dssp -------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 011112223334455677889999999999999 99988877655544 3333222221 22222222222
Q ss_pred HHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377 306 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP 383 (408)
Q Consensus 306 ~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 383 (408)
..++..+..+..+.+..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+.+.+++++++.+..+++.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344566678889999999999999999999999 9999999999888876666677777877777777666654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=8.7e-24 Score=203.16 Aligned_cols=305 Identities=14% Similarity=0.058 Sum_probs=198.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377 1 MEEGRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS 76 (408)
Q Consensus 1 ~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~ 76 (408)
|.|||++++++.++..++.++. +++++++.++++|++.|++.|.. +....++.|+.|+++|++.+++.+.+..+|.
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999 88999999999999999999876 4567789999999999999999999999999
Q ss_pred HHHHHHHhHhc-cccc-------------------------hHHHHHHhhHHHHHHHHHHH--hccCcchhHhhcCChhh
Q 015377 77 VSEAALAWIVM-PILT-------------------------WRWLLALSAIPAFVLLIFIV--FMPESPRYLCTKGRITD 128 (408)
Q Consensus 77 ~l~~~l~~~~~-~~~~-------------------------Wr~~f~i~~i~~~~~~~~~~--~lpESp~~l~~~~~~~~ 128 (408)
++++.++..+. +..+ ||+.|++.++..++..+..+ ..||+++..
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------- 238 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN-------- 238 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC--------
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--------
Confidence 99999988776 4443 99999887776655443333 345543200
Q ss_pred HHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccc-hhhHHHHHHHHHHHH
Q 015377 129 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYF 207 (408)
Q Consensus 129 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 207 (408)
+ + ++ +++. .....+.+++ ++.+... +.. +
T Consensus 239 --------------~-------~------~~-----~~~~--------------~~~~~~~~~~~~~~~~~~-~~~---~ 268 (438)
T 3o7q_A 239 --------------H-------S------DA-----KQGS--------------FSASLSRLARIRHWRWAV-LAQ---F 268 (438)
T ss_dssp --------------C-------C------CS-----STTS--------------HHHHHHHHTTCSHHHHHH-HHH---H
T ss_pred --------------c-------c------cc-----cccc--------------hhhhHHHHHhChHHHHHH-HHH---H
Confidence 0 0 00 0000 0011222332 3333222 221 1
Q ss_pred HHHHHHHHHHHHHHhh-hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 015377 208 GNSFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF 286 (408)
Q Consensus 208 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~ 286 (408)
.....+++...+.+.. ..+. .+.+............+..+++.++.++++||+|||+.+..+.++..+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 269 CYVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2222223333333322 2110 0111122223334456778889999999999999999998877766665
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHH
Q 015377 287 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAI 365 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~ 365 (408)
++......+....... ....++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+
T Consensus 339 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~ 415 (438)
T 3o7q_A 339 CLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE 415 (438)
T ss_dssp HHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGG
T ss_pred HHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 5544443333322222 2223333445677888889999987 899998887 778999999999998888766 55566
Q ss_pred HHHHHHHHHHH
Q 015377 366 LLLEALIVLSV 376 (408)
Q Consensus 366 ~~~~~~~~i~~ 376 (408)
.+.+++.++..
T Consensus 416 ~~~~~~~~~~~ 426 (438)
T 3o7q_A 416 LIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65554444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=5.5e-23 Score=200.74 Aligned_cols=357 Identities=12% Similarity=0.016 Sum_probs=191.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc--chhHHHHHHHHHHHHHHH
Q 015377 2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVS 78 (408)
Q Consensus 2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l 78 (408)
.|||+++..+.++..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++ |+...+.++.+..+|..+
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 82 IGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999998876 456778999999999 777788899999999999
Q ss_pred HHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhc-cCcc----hhHhhcCChhhHHHHHHH--------------HHHH
Q 015377 79 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM-PESP----RYLCTKGRITDAHNILDK--------------IAQF 139 (408)
Q Consensus 79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~l-pESp----~~l~~~~~~~~a~~~l~~--------------~~~~ 139 (408)
++.++..+.+..+||+.|++.++..++..+..++. |+.. +--..+.+.++.++..++ ....
T Consensus 162 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 241 (491)
T 4aps_A 162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV 241 (491)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999888888899999999877665544333222 2211 000011122222222222 0111
Q ss_pred cCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHH----
Q 015377 140 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG---- 215 (408)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 215 (408)
++.+ .++.....................++. .......++..+ ....+...+.....+..
T Consensus 242 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 305 (491)
T 4aps_A 242 GWNS-------------LPAYINLLTIVAIAIPVFYFAWMISSV--KVTSTEHLRVVS-YIPLFIAAVLFWAIEEQGSVV 305 (491)
T ss_dssp SSCC-------------TTHHHHHHHHHHHHHHHHHHHHHC--------------CTT-HHHHHHHHHHHHHHHGGGGTH
T ss_pred cCcc-------------cccchhhhhHHHHHHHHHHHHHHhhcc--cccHHHHHHHHH-HHHHHHHHHHHHHHHhhccHH
Confidence 1000 000000000000000000000000000 000000000000 11111111111111111
Q ss_pred HHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHH
Q 015377 216 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFVCIFLLPL 290 (408)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~-----~~~~~~~~~~~~~ 290 (408)
...+....... +. .... .......+..+++..+.+++.||+|||+... .+..+..+.+..+
T Consensus 306 ~~~~~~~~~~~-~~----------~~~~---~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
T 4aps_A 306 LATFAAERVDS-SW----------FPVS---WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM 371 (491)
T ss_dssp HHHHHHHSCCC-SS----------SCSG---GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcc-Cc----------cCHH---HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence 11111111100 00 0000 1112233455667788899999999986543 3333333322222
Q ss_pred Hhhh---------hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcch
Q 015377 291 VTLQ---------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ 361 (408)
Q Consensus 291 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~ 361 (408)
.... +............+......+..+.+..|.+|++.|+++.|+.+....+|+.++|.+.+.+.+ .+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~ 450 (491)
T 4aps_A 372 AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSE 450 (491)
T ss_dssp HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SST
T ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccH
Confidence 2111 112222222222222223356678899999999999999999999999999999988775544 344
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377 362 TAAILLLEALIVLSVVVILLIPFETKGK 389 (408)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~~~~~~et~~~ 389 (408)
...+.+++++++++.+..+++.++++++
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 451 VAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp THHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777665
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=1.9e-21 Score=183.02 Aligned_cols=287 Identities=14% Similarity=0.101 Sum_probs=179.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377 1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE 79 (408)
Q Consensus 1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~ 79 (408)
|.|||+.+..+.++..++.++.++++|+..+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|..++
T Consensus 61 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 61 RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp TSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 679999999999999999999999999999999999999998875 4556788999999999999999999999999999
Q ss_pred HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377 80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD 158 (408)
Q Consensus 80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (408)
+.++..+.+..+||+.|++.++..++..+ ..+++||+|+.. ++ + +
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~-~ 186 (375)
T 2gfp_A 141 PLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP------------------------------R-T 186 (375)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC------------------------------C-C
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc------------------------------c-c
Confidence 99999888878999999998887766544 456778876521 00 0 0
Q ss_pred cccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377 159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS 237 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (408)
+ + + +..+..+ +++.+ ......+.....++....+.|....+.
T Consensus 187 ~-----~---------------~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 229 (375)
T 2gfp_A 187 R-----L---------------L---TSYKTLFGNSGFN----CYLLMLIGGLAGIAAFEACSGVLMGAV---------- 229 (375)
T ss_dssp C-----T---------------T---TCSTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCSCSSHHH----------
T ss_pred c-----H---------------H---HHHHHHhcCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0 0 0 0011111 12221 122222223333333333333221100
Q ss_pred cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhhhh
Q 015377 238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTF 314 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
.+.+............++.+++.++.+++.||.+||....... ...+........ ..+............+......
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 309 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLF 309 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh
Confidence 0001111112223334556677777777778877733222211 111111111111 1122222122222222223345
Q ss_pred hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 015377 315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC 359 (408)
Q Consensus 315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~ 359 (408)
+....+..|.+| +.|+++.|+.+..+.+|+.++|.+.+.+.+..
T Consensus 310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 677788899999 89999999999999999999998887766543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.83 E-value=3.9e-20 Score=176.83 Aligned_cols=333 Identities=12% Similarity=0.073 Sum_probs=180.6
Q ss_pred CCcchhHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHhhccCCcch-hhhHHHhhhcCC--CcchhHHHHHHHHHH
Q 015377 1 MEEGRMSILGGALVTFVAG---LLSAFSPNYI-SLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWT 73 (408)
Q Consensus 1 ~~gRr~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~ 73 (408)
|.|||+.++.+..++.++. ...++++... .++.+|++.|++.|... .......++.++ ++||...+..+....
T Consensus 69 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (417)
T 2cfq_A 69 KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGC 148 (417)
T ss_dssp TSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence 6899999999888775432 1223333222 24567777777666432 222222333332 456766677766777
Q ss_pred HHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377 74 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG 153 (408)
Q Consensus 74 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 153 (408)
+|..+++.++..+.+ .+||+.|++.+++.++..+..++.||+|+. +.+.+ +
T Consensus 149 ~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------~- 199 (417)
T 2cfq_A 149 VGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA------------------------N- 199 (417)
T ss_dssp THHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS------------------------S-
T ss_pred HHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc------------------------c-
Confidence 888888887776654 579999998887765554444444443310 00000 0
Q ss_pred CCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015377 154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS 232 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (408)
. ++ .+++ +...+..+.++ +++.+.... ..+.....++....+.|......
T Consensus 200 -~--~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----- 250 (417)
T 2cfq_A 200 -A--VG----ANHS-------------AFSLKLALELFRQPKLWFLSL----YVIGVSCTYDVFDQQFANFFTSF----- 250 (417)
T ss_dssp -S--SS----SCCC-------------CCCHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred -c--cc----cccc-------------cccHHHHHHHhcCCchhhHHH----HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 0 00 0000 00001112222 233332221 11111112222211122111000
Q ss_pred ccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 015377 233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG 312 (408)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
................+..+..+++.++.++++||+|||+.+..+..+..+.........+............+....
T Consensus 251 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (417)
T 2cfq_A 251 --FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp --SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHH
T ss_pred --HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 000000011112223344466778899999999999999988776665555443333322222221111111111122
Q ss_pred hhhhhhhhcccccCCchhhHHHhHH-HHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015377 313 TFIIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 391 (408)
Q Consensus 313 ~~~~~~~~~~el~p~~~R~~a~gi~-~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~ 391 (408)
..+..+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....|.+++++++++.+..+++.||+|..++
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 2344578899999999999999996 667779999999999887776555566778888888888877777788776554
Q ss_pred cc
Q 015377 392 VN 393 (408)
Q Consensus 392 ~~ 393 (408)
-.
T Consensus 409 ~~ 410 (417)
T 2cfq_A 409 LR 410 (417)
T ss_dssp SS
T ss_pred HH
Confidence 43
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.81 E-value=2.4e-19 Score=176.36 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=96.2
Q ss_pred CC-cchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHH---HHHHHHH
Q 015377 1 ME-EGRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV---FSTFWTF 74 (408)
Q Consensus 1 ~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~ 74 (408)
|. |||+.+..+.++..++.++.++++ ++..++++|++.|++.|.. +....++.|++|+++|++..+. .+....+
T Consensus 80 r~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 80 RFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 46 999999999999999999999999 9999999999999998876 4567789999999999887766 8888999
Q ss_pred HHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHH
Q 015377 75 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 111 (408)
Q Consensus 75 G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~ 111 (408)
|.++++.++..+.+..+||+.|++.++..++..+..+
T Consensus 160 g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887778999999998877665544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=4.6e-11 Score=114.60 Aligned_cols=142 Identities=14% Similarity=0.047 Sum_probs=103.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377 247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAP 322 (408)
Q Consensus 247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (408)
....+..+...++.++.|+++||+|||+.++.+.++.++..+.... ..+........+...++.....+....+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~ 145 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 145 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 3344556777889999999999999999998887777665554444 333222222222333333344566778899
Q ss_pred cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377 323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG 388 (408)
Q Consensus 323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~ 388 (408)
|.+|.+.|+++.|+.+....+|.+++|.+.+.+.+..+ +...+.+.++++++..+..++..||++.
T Consensus 146 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 146 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999999999999999999999998887776666 6677888887777777776666677654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.24 E-value=6.1e-10 Score=106.30 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377 246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAP 322 (408)
Q Consensus 246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (408)
........+...++.++.|.++||+|||+.++.+.++.++..+.. ....+........++..+......+....+.+
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 143 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT 143 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHH
Confidence 344445567778899999999999999999988877766655444 33333232222223333333344566788899
Q ss_pred cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377 323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV 356 (408)
Q Consensus 323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~ 356 (408)
|.+|.+.|+.+.|+.+....+|.+++|.+.+.+.
T Consensus 144 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887766
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=3.5e-10 Score=109.87 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=100.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015377 246 YINVFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI 324 (408)
Q Consensus 246 ~~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 324 (408)
........++..++.+++|+++|| +|||+.+..+.++..+.........+........+...+......+....+.+|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 136 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTL 136 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 334445567788899999999999 8999999888777766655554444333332222333333334456778889999
Q ss_pred cCCch--hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377 325 YPTSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET 386 (408)
Q Consensus 325 ~p~~~--R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et 386 (408)
+|.+. |+++.++.+....+|..++|.+.+.+.+..++...+.+.++..+++.+...+..|+.
T Consensus 137 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 137 YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99988 778888888999999999999988887766766777777766666666655554443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.11 E-value=5.8e-10 Score=104.30 Aligned_cols=143 Identities=17% Similarity=0.052 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377 247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP 326 (408)
Q Consensus 247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p 326 (408)
.......+...++.+..|+++||+|||+.+..+.....+........++............+......+....+.+|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~ 118 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE 118 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC
Confidence 34445567778899999999999999999888777666655444443333322222222233333345667788899999
Q ss_pred CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377 327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 389 (408)
Q Consensus 327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~ 389 (408)
.+.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 119 RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999999999888776655555667777777766666556667777654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.06 E-value=4.4e-09 Score=102.97 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=93.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377 248 NVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIY 325 (408)
Q Consensus 248 ~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 325 (408)
...+..+...++.+++|+++||+ |||+.+..+.++..+..+...... +........+...+......+....+.+|.+
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 138 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF 138 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHc
Confidence 33444567778899999999999 999999887776666555444433 3332222222233333344567788899999
Q ss_pred CCchhhHHHhH---HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 015377 326 PTSMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF 384 (408)
Q Consensus 326 p~~~R~~a~gi---~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 384 (408)
|++.|+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...+..|
T Consensus 139 ~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 139 DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999766665 888888999999988877776666666777777776666655554443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.73 E-value=3.5e-07 Score=88.47 Aligned_cols=103 Identities=12% Similarity=0.016 Sum_probs=71.0
Q ss_pred HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHhhhhh
Q 015377 253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGTF 314 (408)
Q Consensus 253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
.++.++|.++.|+++||+|||+.+..+.++..+..+...+ ..+.......-+...+...+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998877766554443321 1111222222223333334455
Q ss_pred hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377 315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL 355 (408)
Q Consensus 315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l 355 (408)
+....+.+|..|++.|+...++......+|..+++.+...+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 77888999999999999999998888777777776655433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.29 E-value=4.2e-07 Score=86.26 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=90.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHH-HHHHHHHHHHH
Q 015377 1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVS 78 (408)
Q Consensus 1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l 78 (408)
|.|||+.+..+.++..+..++.++.++...+++..++.|++.+.. .....+..|..|++.||...++ ++....+|..+
T Consensus 285 r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 358999998888888777777778888888888888888775543 3345678999999999998888 57788899999
Q ss_pred HHHHHhHhccccchHHHHHHhhHHHHHHHHH-HHhccCcch
Q 015377 79 EAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPR 118 (408)
Q Consensus 79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~ 118 (408)
+|.+...+.+..+|+..|.+.++..++..+. ....||.++
T Consensus 365 gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred hhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9998887777778999998887776665443 444565443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=30.98 E-value=31 Score=16.85 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=10.8
Q ss_pred HHHHHhhhchHHHH
Q 015377 263 AALLVDRVGRKLSM 276 (408)
Q Consensus 263 ~~~l~dr~grR~~~ 276 (408)
.|-+++|+||+.+.
T Consensus 3 fgklikkfgrkais 16 (26)
T 2g9p_A 3 FGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHTSHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 46788999998753
Done!