BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015378
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 180/334 (53%), Gaps = 11/334 (3%)
Query: 71 VESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRS 130
V ++QG+VA+ D +++G +L++GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 131 SATSQTQAFDMRETAPLAASQDMY---ENNPGA--NYAGALSMGVPGEIAGLHEAWLKHG 185
T A D RE AP A++DM+ + NP + + L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRIL-NDRGLQEVFAPNGKLLKPGDKC 244
+ + QPA KLA++GF+V L + G +L N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 245 YNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXX 304
LA+SLE +AE GP Y GT+ E + +++ K GG++T EDL
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 305 MGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRII-EALKHMFAARMN-LG 362
GY + MPPPS G + +LNIL+++ G+ +I+ EA K+ +A R LG
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLG 318
Query: 363 DPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
DP+FV + + + ++AK I +I N P
Sbjct: 319 DPDFVKVP--WQALTNKAYAKSIADQIDINKAKP 350
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 180/334 (53%), Gaps = 11/334 (3%)
Query: 71 VESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRS 130
V ++QG+VA+ D +++G +L++GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 131 SATSQTQAFDMRETAPLAASQDMY---ENNPGA--NYAGALSMGVPGEIAGLHEAWLKHG 185
T A D RE AP A++DM+ + NP + + L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRIL-NDRGLQEVFAPNGKLLKPGDKC 244
+ + QPA KLA++GF+V L + G +L N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 245 YNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXX 304
LA+SLE +AE GP Y GT+ E + +++ K GG++T EDL
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 305 MGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRII-EALKHMFAARMN-LG 362
GY + MPPPS G + +LNIL+++ G+ +I+ EA K+ +A R LG
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLG 318
Query: 363 DPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
DP+FV + + + ++AK I +I N P
Sbjct: 319 DPDFVKVP--WQALTNKAYAKSIADQIDINKAKP 350
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 11/334 (3%)
Query: 71 VESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRS 130
V ++QG VA+ D +++G +L++GG+AVDAAVA L V +P A +GGG F ++RS
Sbjct: 20 VRAKQGXVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFXLIRS 79
Query: 131 SATSQTQAFDMRETAPLAASQDMY---ENNPGA--NYAGALSMGVPGEIAGLHEAWLKHG 185
T A D RE AP A++D + + NP + + L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREXAPAKATRDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRIL-NDRGLQEVFAPNGKLLKPGDKC 244
+ QPA KLA++GF+V L + G +L N + +F G+ LK GD
Sbjct: 139 TXPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 245 YNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXX 304
LA+SLE +AE GP Y GT+ E + ++ K GG++T EDL
Sbjct: 199 VQANLAKSLEXIAENGPDEFYKGTIAEQIAQEXQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 305 MGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRII-EALKHMFAARMN-LG 362
GY + PPPS G + +LNIL+++ G+ +I EA K+ +A R LG
Sbjct: 259 RGYQVYSXPPPSSGGIHIVQILNILENFDXKKYGFGSADAXQIXAEAEKYAYADRSEYLG 318
Query: 363 DPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
DP+FV + + + ++AK I +I N P
Sbjct: 319 DPDFVKVP--WQALTNKAYAKSIADQIDINKAKP 350
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 166/324 (51%), Gaps = 11/324 (3%)
Query: 74 EQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSAT 133
+ G+VA SEIGA +L++GG+A+DAAVA L V PM SGIGGG FM+V T
Sbjct: 27 KDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKT 86
Query: 134 SQTQAFDMRETAPLAASQDMY--ENNPGANYAGALS----MGVPGEIAGLHEAWLKHGRL 187
T D RE AP A+ DM+ EN ++ ++ +GVPG + GL EA K G
Sbjct: 87 KDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTR 146
Query: 188 AWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNE 247
+ + L P+IKLA++GF + L I+ + L+ ++VF PNG+ LK GD +
Sbjct: 147 SMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLKEGDTLIQK 205
Query: 248 KLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGY 307
LA++ + + +G A Y G + L V GG +T +DL GY
Sbjct: 206 DLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGY 265
Query: 308 TISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHM-FAARMNL-GDPN 365
I+ PPPS G + +L ILD + S + ++++ H+ +A R + GDP
Sbjct: 266 QIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPE 325
Query: 366 FVNISSVLSEMLSLSFAKQIQQKI 389
FVN+ L +L + K+ QQ I
Sbjct: 326 FVNVP--LKGLLHPDYIKERQQLI 347
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 165/324 (50%), Gaps = 11/324 (3%)
Query: 74 EQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSAT 133
+ G+VA SEIGA +L++GG+A+DAAVA L V PM SGIGGG FM+V T
Sbjct: 19 KDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKT 78
Query: 134 SQTQAFDMRETAPLAASQDMY--ENNPGANYAGALS----MGVPGEIAGLHEAWLKHGRL 187
T D RE AP A+ DM+ EN ++ ++ +GVPG + GL EA K G
Sbjct: 79 KDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTR 138
Query: 188 AWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNE 247
+ + L P+IKLA++GF + L I+ + L+ ++VF PNG+ LK GD +
Sbjct: 139 SMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLKEGDTLIQK 197
Query: 248 KLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGY 307
LA++ + + +G A Y G + L V GG +T +DL GY
Sbjct: 198 DLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGY 257
Query: 308 TISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHM-FAARMNL-GDPN 365
I+ PPPS G + + ILD + S + ++++ H+ +A R + GDP
Sbjct: 258 QIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPE 317
Query: 366 FVNISSVLSEMLSLSFAKQIQQKI 389
FVN+ L +L + K+ QQ I
Sbjct: 318 FVNVP--LKGLLHPDYIKERQQLI 339
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 23/346 (6%)
Query: 65 ASGADIVESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGS 124
AS I ++ G+ + SEIG +L +GG+A+DAAVA L VV+P A IGGG
Sbjct: 24 ASYPPIKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGG 83
Query: 125 FMIVRSSATSQTQAFDMRETAPLAASQDMYENN-----PGANYAGALSMGVPGEIAGLHE 179
F ++ A + A D RE APL A+++M+ + P + G L+ GVPG +AG+
Sbjct: 84 FAVIH-LANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEA 142
Query: 180 AWLKHGRLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKL-L 238
K+G L PAIKLA+ G+ ++ + ++ R L ++ F G L
Sbjct: 143 MLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDY 202
Query: 239 KPGDKCYNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXX 298
+ GD + LA++L + G + Y G V E++ KD+ K GGI+T EDL
Sbjct: 203 QEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRK 262
Query: 299 XXXXXXMGYTISGMPPPSCGTAGMAMVLNILDS-------YGSSDSAKGNLGLHRIIEAL 351
GY I M PPS G + +LN++++ YG+S + +H EA+
Sbjct: 263 PVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKN------IHIAAEAM 316
Query: 352 KHMFAAR-MNLGDPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
+ +A R + +GD +FV++ + ++++ ++AK+I I +T P
Sbjct: 317 RQAYADRSVYMGDADFVSVP--VDKLINKAYAKKIFDTIQPDTVTP 360
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 23/346 (6%)
Query: 65 ASGADIVESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGS 124
AS I ++ G+ + SEIG +L +GG+A+DAAVA L VV+P A IGGG
Sbjct: 25 ASYPPIKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGG 84
Query: 125 FMIVRSSATSQTQAFDMRETAPLAASQDMYENN-----PGANYAGALSMGVPGEIAGLHE 179
F ++ A + A D RE APL A+++M+ + P + G L+ GVPG +AG+
Sbjct: 85 FAVIH-LANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEA 143
Query: 180 AWLKHGRLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKL-L 238
K+G L PAIKLA+ G+ ++ + ++ R L ++ F G L
Sbjct: 144 MLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDY 203
Query: 239 KPGDKCYNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXX 298
+ GD + LA++L + G + Y G V E++ KD+ K GGI+T EDL
Sbjct: 204 QEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRK 263
Query: 299 XXXXXXMGYTISGMPPPSCGTAGMAMVLNILDS-------YGSSDSAKGNLGLHRIIEAL 351
GY I M PPS G + +LN++++ YG+S + +H EA+
Sbjct: 264 PVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKN------IHIAAEAM 317
Query: 352 KHMFAAR-MNLGDPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
+ +A R + +GD +FV++ + ++++ ++AK+I I +T P
Sbjct: 318 RQAYADRSVYMGDADFVSVP--VDKLINKAYAKKIFDTIQPDTVTP 361
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 28/295 (9%)
Query: 78 VAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSATSQTQ 137
V+A E G +L+ GG AVDAA+ + LGVV ASGIGGG ++ S +
Sbjct: 23 VSASHPLAVEEGXKVLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGXLIISK--DKET 80
Query: 138 AFDMRETAP-LAASQDMYENNPGANYAGALSMGVPGEIAGLHEAWLKHGRLAWRTLFQPA 196
D RET P +Q + +GVPG +AG +G L L QPA
Sbjct: 81 FIDYRETTPYFTGNQKPH-------------IGVPGFVAGXEYIHDNYGSLPXGELLQPA 127
Query: 197 IKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNEKLAQSLEAV 256
I A++GF V L + + RI +D+ +F PNG+ ++ G+ LA++L+ +
Sbjct: 128 INYAEKGFKVDDSLTXRLDLAKPRIYSDK--LSIFYPNGEPIETGETLIQTDLARTLKKI 185
Query: 257 AEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGYTISGMPPPS 316
++G + Y G V + K +++ED++ GY + PPP
Sbjct: 186 QKEGAKGFYEGGVARAISKTAK-----ISLEDIKGYKVEVRKPVKGNYXGYDVYTAPPPF 240
Query: 317 CGTAGMAMVLNILDS---YGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFVN 368
G + L + + Y D I + + + NLGDPN+VN
Sbjct: 241 SGVT-LLQXLKLAEKKEVYKDVDHTATYXSKXEEISRIAYQ-DRKKNLGDPNYVN 293
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 127/303 (41%), Gaps = 9/303 (2%)
Query: 73 SEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSA 132
S++ V+A+ S G +L++GG+ DAA+A + L V G+GG F ++R
Sbjct: 10 SQRSVIASSSELASLAGRDILKRGGNIFDAALAVSAXLCVTQNNLCGLGGDLFALIRDE- 68
Query: 133 TSQTQAFDMRETAPLAASQDMYENN-----PGANYAGALSMGVPGEIAGLHEAWLKHGRL 187
Q + A A S D YE+ P A++ VPG E + K
Sbjct: 69 NGQIXDLNGSGQASRAVSIDYYESXGLTKIPERGPYAAIT--VPGIAGSWDEIFRKFATX 126
Query: 188 AWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNE 247
+ +PAI+ A GF + IA+S I RG +F PNG + G+
Sbjct: 127 DIADILEPAIRTASAGFPITQNYSDSIARSAPVIGQYRGWSSIFXPNGSVPVAGEILKQP 186
Query: 248 KLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGY 307
LA+S +E+G ++ Y+G++ ++++ + G L+ DLR +
Sbjct: 187 DLAESFRLXSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEF 246
Query: 308 TISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFV 367
I P S G + + +S+G + I E + + R + DP++
Sbjct: 247 RIYETSPNSQGITVIEWIRG-XESHGYDSRTXWEAKIEDIFETXEEAYDKRRKITDPSYX 305
Query: 368 NIS 370
NI+
Sbjct: 306 NIA 308
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 158/340 (46%), Gaps = 20/340 (5%)
Query: 69 DIVESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIV 128
++V ++ G+VA ++ G +L+ GG+A+DAA+ATA L V+ P ++GIG +F +V
Sbjct: 17 NVVYAKNGMVATSQPLAAQAGLDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALV 76
Query: 129 RSSATSQTQAFDMRETAPLAASQDM-----YENNPGANYAGALSMGVPGEIAGLHEAWLK 183
+ + + AP++ + + YE G + + VPG E
Sbjct: 77 WTKG--KLHGLNGSGRAPMSLTMEAVKAKGYEQE--LPPYGVIPVTVPGAPGAWAELAKM 132
Query: 184 HGRLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRI---LNDRGLQ---EVFAPNGKL 237
+G L PAI+ A+EG+ V P L ++ + R+ D Q + FAP G+
Sbjct: 133 YGNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQPWFDTFAPKGRA 192
Query: 238 LKPGDKCYNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXX 297
+ G+ ++ A +L ++AE ++ Y G + + + K GG LT EDL
Sbjct: 193 PRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWV 252
Query: 298 XXXXXXXMGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHMFAA 357
GY + +PP G + LNI+ + + H+ IEA+K F
Sbjct: 253 EPISIDYRGYRVWEIPPNGQGLVALE-ALNIVKGFEFYHKDTVDT-YHKQIEAMKLAFVD 310
Query: 358 RMN-LGDPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
M + +P+ +++S + ++LS +A + +++I + P
Sbjct: 311 GMKYVTEPSDMSVS--VEQLLSDEYATERRKEIGEQALTP 348
>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 528
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGL-QEVFAPNGKLLKPGDKC 244
R A R +P + G +P L +G + L D L +EVF P G +++ G
Sbjct: 371 RFATRNAVKPLLATESSGRDASPNL---FETTGAQFLADHALGEEVFGPLGLVVRVGSPA 427
Query: 245 YNEKLAQSLE 254
E+LA+ +
Sbjct: 428 EXEELARGFQ 437
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 330 DSYGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFVN 368
D+ DS+ N G R++E + +NL D N+VN
Sbjct: 1230 DNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVN 1268
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 330 DSYGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFVN 368
D+ DS+ N G R++E + +NL D N+VN
Sbjct: 1230 DNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVN 1268
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 330 DSYGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFVN 368
D+ DS+ N G R++E + +NL D N+VN
Sbjct: 1134 DNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVN 1172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,695,141
Number of Sequences: 62578
Number of extensions: 441485
Number of successful extensions: 925
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 22
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)