Query 015379
Match_columns 408
No_of_seqs 198 out of 681
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 1.3E-85 2.8E-90 650.0 22.7 341 52-403 133-477 (549)
2 COG4299 Uncharacterized protei 100.0 2.4E-64 5.3E-69 484.0 16.9 275 59-404 4-282 (371)
3 PF07786 DUF1624: Protein of u 99.9 7.3E-21 1.6E-25 179.1 15.6 189 62-346 1-194 (223)
4 COG3503 Predicted membrane pro 99.4 5.8E-13 1.3E-17 131.2 8.2 116 61-187 14-134 (323)
5 COG2311 Predicted membrane pro 99.3 2.6E-12 5.7E-17 131.5 8.5 134 58-225 8-157 (394)
6 PRK10835 hypothetical protein; 98.8 1.3E-08 2.9E-13 104.0 8.7 103 66-194 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 97.8 0.0015 3.3E-08 66.9 17.6 79 62-144 1-82 (358)
8 PF06423 GWT1: GWT1; InterPro 97.7 0.0003 6.6E-09 62.7 9.8 88 314-402 3-99 (136)
9 PF01757 Acyl_transf_3: Acyltr 97.4 0.0072 1.6E-07 56.6 15.4 54 64-117 2-61 (340)
10 PRK03854 opgC glucans biosynth 96.6 0.0031 6.7E-08 64.1 5.8 90 57-147 3-101 (375)
11 COG4645 Uncharacterized protei 94.7 0.023 5E-07 58.0 3.1 85 59-147 20-110 (410)
12 COG3274 Predicted O-acyltransf 89.2 1.5 3.2E-05 44.8 7.8 57 60-116 2-65 (332)
13 PF15345 TMEM51: Transmembrane 85.6 0.66 1.4E-05 45.1 2.9 54 350-403 9-84 (233)
14 COG1835 Predicted acyltransfer 81.0 0.33 7.2E-06 49.5 -1.2 69 56-128 8-76 (386)
15 COG3594 NolL Fucose 4-O-acetyl 72.7 3.8 8.3E-05 42.2 3.7 69 60-139 2-76 (343)
16 PF07760 DUF1616: Protein of u 59.2 1.9E+02 0.0042 28.7 13.3 75 103-190 29-107 (287)
17 COG5062 Uncharacterized membra 52.4 25 0.00054 36.7 5.1 237 60-402 108-353 (429)
18 COG3619 Predicted membrane pro 50.0 92 0.002 30.4 8.4 59 90-150 48-106 (226)
19 PRK05771 V-type ATP synthase s 49.4 44 0.00096 37.0 7.0 68 311-397 343-410 (646)
20 PF13828 DUF4190: Domain of un 39.5 55 0.0012 25.6 4.2 49 316-364 9-58 (62)
21 PF05857 TraX: TraX protein; 39.0 3.3E+02 0.0071 25.6 10.3 69 65-148 2-70 (219)
22 KOG4683 Uncharacterized conser 37.0 22 0.00047 37.4 2.0 46 214-259 296-343 (549)
23 PF13272 DUF4063: Protein of u 33.3 3.3E+02 0.0072 23.8 8.8 15 348-362 92-106 (107)
24 cd08764 Cyt_b561_CG1275_like N 33.2 2.1E+02 0.0045 27.8 7.9 28 311-338 168-195 (214)
25 PF11654 DUF2665: Protein of u 32.0 58 0.0013 24.4 3.1 32 105-136 8-41 (47)
26 PF07787 DUF1625: Protein of u 27.2 2E+02 0.0044 27.8 6.9 36 352-387 188-229 (248)
27 TIGR02230 ATPase_gene1 F0F1-AT 27.1 2E+02 0.0042 24.8 5.9 27 313-339 40-68 (100)
28 PF08507 COPI_assoc: COPI asso 26.4 4.4E+02 0.0096 23.1 8.6 50 99-148 30-82 (136)
29 KOG2532 Permease of the major 24.1 1.7E+02 0.0037 31.3 6.2 74 314-390 295-371 (466)
30 PRK09848 glucuronide transport 24.0 1.9E+02 0.004 29.6 6.3 48 316-363 47-95 (448)
31 PF12794 MscS_TM: Mechanosensi 23.1 8.2E+02 0.018 25.0 12.5 78 104-191 90-176 (340)
32 PF08592 DUF1772: Domain of un 21.0 1E+02 0.0022 26.3 3.1 25 352-376 69-93 (139)
33 PF09877 DUF2104: Predicted me 20.9 4.1E+02 0.0088 22.9 6.5 33 352-393 38-71 (99)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-85 Score=650.00 Aligned_cols=341 Identities=41% Similarity=0.753 Sum_probs=298.8
Q ss_pred HhHhhhhccchhhhhhhhhhcchheeeeeeCccccccccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015379 52 LQQLLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVK 131 (408)
Q Consensus 52 ~~~~~~~~~~Rl~SLD~lRGlai~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~ 131 (408)
+....++.++|+.|||+|||+|+++||+||+.|+.||.++|++|||++++|+|||+|+||||+|+++|+++...|.+..+
T Consensus 133 ~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~r 212 (549)
T KOG4683|consen 133 EARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATR 212 (549)
T ss_pred hhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhH
Confidence 44556667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHH
Q 015379 132 KIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQW 211 (408)
Q Consensus 132 kilrRsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
|.-.|+.+|+++|++++++|.|..+++|++.|.+.+|+||||||+|++|+++|++..+..+.. +.+. .|
T Consensus 213 Ka~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~--~~~~---------S~ 281 (549)
T KOG4683|consen 213 KAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPI--SPQR---------SW 281 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCC--cccc---------ch
Confidence 999999999999999999999999999999999999999999999999999999998876532 1111 13
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCccccC---CCCcceeeeeccCCCCCCC-CCCHhHHHhhhhcCCCcccCCcccccc
Q 015379 212 QWIGGFIAFVIYIITTYSLYVPNWSFSEHS---DHGVKKYIVKCGMRGHLGP-ACNAVGYVDRELWGINHLYSDPVWSRL 287 (408)
Q Consensus 212 q~~v~~~ll~~Y~~l~~~l~vP~~~~~~~~---~~~~~~~~~~cg~~g~l~~-~~N~a~~IDr~vLG~~HlY~~p~~~~~ 287 (408)
|-++....+..|.+..|+-+||+|.+-..| |+-++.|.++||.++...+ .||++||.||++||++||||+|+|||+
T Consensus 282 ~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~ 361 (549)
T KOG4683|consen 282 QRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKRV 361 (549)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhhhHHhhhhhHHHhcCchHHHh
Confidence 334444444444444444444443322221 2223444445666677654 599999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCcCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhC
Q 015379 288 EACTLSSPNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFT 367 (408)
Q Consensus 288 ~~~~~~~p~~g~~~~~~~~~~~~~fDPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~ll~~~ 367 (408)
|+||.|+|++||++.|||+||++|||||||||+|.|++++++|+++||++.+.+.+.+|+++|...++++.++|..+++.
T Consensus 362 k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~ 441 (549)
T KOG4683|consen 362 KDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGF 441 (549)
T ss_pred hhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccccCCChhHHHHHhHHHHHHHHHHHHHhhcc
Q 015379 368 NAIPINKQLYSFSYVCFTAGAAGIVFSALYVLVLLL 403 (408)
Q Consensus 368 ~~~PiNK~LWT~SfVL~T~G~a~llLa~~y~lID~~ 403 (408)
+.+|+||+|||.||+|+|+|+|+++|+.+|++||++
T Consensus 442 s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~ 477 (549)
T KOG4683|consen 442 SAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVR 477 (549)
T ss_pred cccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999999999999999999999986
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.4e-64 Score=484.00 Aligned_cols=275 Identities=31% Similarity=0.429 Sum_probs=245.5
Q ss_pred ccchhhhhhhhhhcchheeeeeeCccc---cccccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Q 015379 59 KSKRVATLDAFRGLTVVLMILVDDAGG---AYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (408)
Q Consensus 59 ~~~Rl~SLD~lRGlai~lMIlVN~~g~---~~~~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~kilr 135 (408)
+..|+.|||++||+|+++||+|||.|- .|+|+.|++|+|+|++|+|||+|+|++|.+|+||.+|..+.++..+++.|
T Consensus 4 pa~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~R 83 (371)
T COG4299 4 PAFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYR 83 (371)
T ss_pred chhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHH
Confidence 347999999999999999999999863 89999999999999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccc-CccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHH
Q 015379 136 RTLKLLFWGIILQGGYSHAPDALSYGVD-MKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (408)
Q Consensus 136 Rsl~LfllGl~l~~~~~~~~~~~~~~~~-~~~~Ri~GVLqrIal~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~ 214 (408)
|.+.+|++|.+++.+ +... .|.++ .+.+|.|||||||++||+++|+....++. ++||+
T Consensus 84 Raa~~f~Lg~Lm~~F-~~~~---~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~ 142 (371)
T COG4299 84 RAAERFALGYLMGAF-VTVR---DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQAL 142 (371)
T ss_pred HHHHHHHHHHHhhhc-cccc---eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHH
Confidence 999999999999764 2211 13344 56799999999999999999999876654 58999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeeccCCCCCCCCCCHhHHHhhhhcCCCcccCCccccccccccCCC
Q 015379 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSS 294 (408)
Q Consensus 215 v~~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~ 294 (408)
.+++++++||+++...++|+.| ++..+|+..++|+...+.||+|+.
T Consensus 143 laavLL~gYwl~lm~~p~P~~~---------------------l~~~Gn~g~~~d~l~i~~~hLy~~------------- 188 (371)
T COG4299 143 LAAVLLAGYWLFLMFTPHPAAP---------------------LGGIGNVGESADPLQILNDHLYSA------------- 188 (371)
T ss_pred HHHHHHHHHHHHHhhcCCCccc---------------------cccccccccccchhhhhhhhhhcc-------------
Confidence 9999999999888777887653 445688999999999999999985
Q ss_pred CCCCCCCCCCCCCcCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Q 015379 295 PNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINK 374 (408)
Q Consensus 295 p~~g~~~~~~~~~~~~~fDPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~ll~~~~~~PiNK 374 (408)
...|||||++||+|++++++.|+++++.+++++...+....+.+.|++++++|+.|+. .+||||
T Consensus 189 --------------dG~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi~K 252 (371)
T COG4299 189 --------------DGGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPISK 252 (371)
T ss_pred --------------cCCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--ccccch
Confidence 1348999999999999999999999999998877777778889999999999999985 799999
Q ss_pred cCCChhHHHHHhHHHHHHHHHHHHHhhccc
Q 015379 375 QLYSFSYVCFTAGAAGIVFSALYVLVLLLI 404 (408)
Q Consensus 375 ~LWT~SfVL~T~G~a~llLa~~y~lID~~~ 404 (408)
+|||||||++|+|++.+++++||.++|.+.
T Consensus 253 kLWTssyvl~t~G~~llllaac~~l~e~~~ 282 (371)
T COG4299 253 KLWTSSYVLYTAGLGLLLLAACWVLAESPG 282 (371)
T ss_pred hhcCCceeehhhhHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999999863
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.86 E-value=7.3e-21 Score=179.08 Aligned_cols=189 Identities=24% Similarity=0.309 Sum_probs=133.6
Q ss_pred hhhhhhhhhhcchheeeeeeCccc-cccc-cc-cc--cCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Q 015379 62 RVATLDAFRGLTVVLMILVDDAGG-AYAR-ID-HS--PWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (408)
Q Consensus 62 Rl~SLD~lRGlai~lMIlVN~~g~-~~~~-l~-Ha--~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~kilrR 136 (408)
|+.++|++||+||++|+++|.... .+.. .+ |. .+....+.|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998754 2211 11 22 233456789999999999999999999988776 888999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHHHH
Q 015379 137 TLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIGG 216 (408)
Q Consensus 137 sl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~v~ 216 (408)
+++|+++|++++... +....+...++||||.||++|++++++. .+++ +..++++
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~~~-----------------~~~~~~~ 130 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALFL-RLPR-----------------RALLILA 130 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHHH-hcch-----------------hHHHHHH
Confidence 999999999987641 1223456668899999999999988773 3322 2345555
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCcceeeeeccCCCCCCCCCCHhHHHhhhhcCCCcccCCccccccccccCCCCC
Q 015379 217 FIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSPN 296 (408)
Q Consensus 217 ~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~p~ 296 (408)
++++++++.+... +. +. + +...+| ++.
T Consensus 131 ~~~~~~~~~l~~~--~~-------------------------~~--~-----~~~~~~---~~~---------------- 157 (223)
T PF07786_consen 131 LLLLALSWLLSGP--VF-------------------------GP--P-----WLLWLG---LSS---------------- 157 (223)
T ss_pred HHHHHHHHHHhhh--hc-------------------------Cc--h-----HHHHhc---ccc----------------
Confidence 5566655544321 00 00 0 111122 110
Q ss_pred CCCCCCCCCCCcCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHH
Q 015379 297 SGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSAR 346 (408)
Q Consensus 297 ~g~~~~~~~~~~~~~fDPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~r 346 (408)
..++++|..+.+|.++..++|+.+|++..+..+.+.+
T Consensus 158 -------------~~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~~~~~ 194 (223)
T PF07786_consen 158 -------------RNFFSNGYFPLFPWLGFFLLGMALGRLFLRKGRRRFR 194 (223)
T ss_pred -------------cCCCcCCcCccHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2468899999999999999999999999766443333
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.40 E-value=5.8e-13 Score=131.19 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=93.1
Q ss_pred chhhhhhhhhhcchheeeeeeCccc--cccccccccC-Cc--hhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Q 015379 61 KRVATLDAFRGLTVVLMILVDDAGG--AYARIDHSPW-NG--CTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (408)
Q Consensus 61 ~Rl~SLD~lRGlai~lMIlVN~~g~--~~~~l~Ha~W-~G--~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~kilr 135 (408)
+|+.+||++||++|++|++.|...+ .+.+.+-+.= .| ..++.++.|.|+|++|+|..++-.|...+ .++..|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999986543 1222332211 22 24789999999999999999998887764 789999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHH
Q 015379 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIE 187 (408)
Q Consensus 136 Rsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal~Y~v~all~ 187 (408)
|.++|..+++.++.. ||..-++++.++|||+.||++.++.+.+.
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl 134 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL 134 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 44344588999999999999999877664
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.33 E-value=2.6e-12 Score=131.50 Aligned_cols=134 Identities=26% Similarity=0.403 Sum_probs=103.7
Q ss_pred hccchhhhhhhhhhcchheeeeeeCccccccc----cccccC-Cch-----hhhHH-----HHHHHHHHHHHHHHHHhcc
Q 015379 58 QKSKRVATLDAFRGLTVVLMILVDDAGGAYAR----IDHSPW-NGC-----TLADF-----VMPFFLFIVGVAIALALKK 122 (408)
Q Consensus 58 ~~~~Rl~SLD~lRGlai~lMIlVN~~g~~~~~----l~Ha~W-~G~-----t~aDl-----vfP~FlFi~Gvsi~lsl~r 122 (408)
.+++|+.++|++||+++++++++|.....+|. .-|..| .+. -+.|+ +.|+|.|++|+++...++|
T Consensus 8 ~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~~r 87 (394)
T COG2311 8 AQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMMLRR 87 (394)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence 45689999999999999999999987655441 113333 221 12233 8999999999999999999
Q ss_pred cCCchH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 015379 123 VPKING-AVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPR 201 (408)
Q Consensus 123 ~~~k~~-~~~kilrRsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal~Y~v~all~l~~~~~~~~~~~~~ 201 (408)
+.+|++ .....+||...|+++|++|..++|+ ++|-+.|.+++++.+.+++++++
T Consensus 88 ~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~--------------------GDIL~~Ya~~g~ill~~~~~~~k----- 142 (394)
T COG2311 88 AARKGRRWVALYARRLLLLLLLGLIHALFIWD--------------------GDILLAYALTGLILLLFRRRKPK----- 142 (394)
T ss_pred HHHccCccHHHHHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHHHhcccc-----
Confidence 877765 5677799999999999999887776 89999999999999999988754
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHH
Q 015379 202 HLSIFTAYQWQWIGGFIAFVIYII 225 (408)
Q Consensus 202 ~~~~~~~~~~q~~v~~~ll~~Y~~ 225 (408)
+.+.++..+++.+.+
T Consensus 143 ---------~l~~~~~~l~l~~~~ 157 (394)
T COG2311 143 ---------TLLIWATALLLLPVL 157 (394)
T ss_pred ---------HHHHHHHHHHHHHHH
Confidence 345555555555553
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.80 E-value=1.3e-08 Score=104.02 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=75.0
Q ss_pred hhhhhhcchheeeeeeCccccccc-------ccc--ccCCch--hhh-----HHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015379 66 LDAFRGLTVVLMILVDDAGGAYAR-------IDH--SPWNGC--TLA-----DFVMPFFLFIVGVAIALALKKVPKINGA 129 (408)
Q Consensus 66 LD~lRGlai~lMIlVN~~g~~~~~-------l~H--a~W~G~--t~a-----DlvfP~FlFi~Gvsi~lsl~r~~~k~~~ 129 (408)
+|++||+++++++++|......|. ..+ +.+|.. .+. .-.+|+|.+++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999854332221 111 111211 122 337899999999999999875322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCC
Q 015379 130 VKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRR 194 (408)
Q Consensus 130 ~~kilrRsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal~Y~v~all~l~~~~~~ 194 (408)
...||.+.|+++|++|...+|+ ++|-..|.+++++.+.+.+++
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~--------------------GDIL~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWD--------------------GDILLAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcc--------------------chHHHHHHHHHHHHHHHHhcc
Confidence 3669999999999999765555 789999999999998887763
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.0015 Score=66.94 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=53.5
Q ss_pred hhhhhhhhhhcchheeeeeeCccccccccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCch---HHHHHHHHHHH
Q 015379 62 RVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKIIFRTL 138 (408)
Q Consensus 62 Rl~SLD~lRGlai~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~---~~~~kilrRsl 138 (408)
|...||.+||++++.|.+-|-+++.+..+.|.. +.+.| -.-.|+|++|++..+.+.|+..|. ...+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~---~Gfsd-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRN---FGFSD-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhcccc---ccCCC-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 667799999999966655555454333233322 23333 234699999999999998775443 46889999998
Q ss_pred HHHHHH
Q 015379 139 KLLFWG 144 (408)
Q Consensus 139 ~LfllG 144 (408)
.|..--
T Consensus 77 ~lY~a~ 82 (358)
T PF10129_consen 77 QLYVAH 82 (358)
T ss_pred HHHHHH
Confidence 765433
No 8
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.68 E-value=0.0003 Score=62.72 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=69.7
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHhcccchh---------HHHHHHHHHHHHHHHHHHHHhhCCCccccccCCChhHHHH
Q 015379 314 PEGLLSTISAILSGTIGIHYGHVLIHFKGHS---------ARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCF 384 (408)
Q Consensus 314 PEGlLStlpAi~t~llG~~aG~~L~~~~~~~---------~rl~~l~~~G~~ll~lG~ll~~~~~~PiNK~LWT~SfVL~ 384 (408)
-|||+|.+.-++.=++|+..|+.+...+... ++..+++.+.+++.++-++++. ...|+.+++...+||++
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNS-YIEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHhcchHHHHH
Confidence 5999999999999999999999986544333 3445666777777777777754 37999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhc
Q 015379 385 TAGAAGIVFSALYVLVLL 402 (408)
Q Consensus 385 T~G~a~llLa~~y~lID~ 402 (408)
+.+.....++.++.+-++
T Consensus 82 v~a~n~~~l~~~~~i~~~ 99 (136)
T PF06423_consen 82 VLAFNTFFLALYLLIELL 99 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888775544333
No 9
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.39 E-value=0.0072 Score=56.55 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=37.3
Q ss_pred hhhhhhhhcchheeeeeeCccccccc-cccccCCc--h---hhhHHHHHHHHHHHHHHHH
Q 015379 64 ATLDAFRGLTVVLMILVDDAGGAYAR-IDHSPWNG--C---TLADFVMPFFLFIVGVAIA 117 (408)
Q Consensus 64 ~SLD~lRGlai~lMIlVN~~g~~~~~-l~Ha~W~G--~---t~aDlvfP~FlFi~Gvsi~ 117 (408)
.++|.+||++++++++.|........ ........ . .......|+|.++.|..+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 58999999999999998865531110 01000000 0 5677899999999999998
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=96.63 E-value=0.0031 Score=64.09 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=59.4
Q ss_pred hhccchhhhhhhhhhcchheeeeeeCccc--ccc--c--cccccCCch-h-hhH-HHHHHHHHHHHHHHHHHhcccCCch
Q 015379 57 QQKSKRVATLDAFRGLTVVLMILVDDAGG--AYA--R--IDHSPWNGC-T-LAD-FVMPFFLFIVGVAIALALKKVPKIN 127 (408)
Q Consensus 57 ~~~~~Rl~SLD~lRGlai~lMIlVN~~g~--~~~--~--l~Ha~W~G~-t-~aD-lvfP~FlFi~Gvsi~lsl~r~~~k~ 127 (408)
+++++|...+|.+||+++++.++.|.... ... . .+.+.|-.. . ..+ +-+|+|.|+.|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 44568999999999999999998886321 110 0 111222111 1 111 458999999999988887654 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015379 128 GAVKKIIFRTLKLLFWGIIL 147 (408)
Q Consensus 128 ~~~~kilrRsl~LfllGl~l 147 (408)
+..++=++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 67777788888877777554
No 11
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.023 Score=58.01 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=57.6
Q ss_pred ccchhhhhhhhhhcchheeeeeeCccccccccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCch-H--HHHHHHH
Q 015379 59 KSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN-G--AVKKIIF 135 (408)
Q Consensus 59 ~~~Rl~SLD~lRGlai~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~-~--~~~kilr 135 (408)
..+|...||++||++++.|.+=|-++..+..+.|.+. .+.|- .=.|+|+.|++....+.|+--++ + -..|+.|
T Consensus 20 ~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lkiWr 95 (410)
T COG4645 20 PMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKIWR 95 (410)
T ss_pred ccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHHHH
Confidence 3479999999999999877544444543434555432 22222 23599999999999998775443 3 3558999
Q ss_pred HHHHHHH---HHHHH
Q 015379 136 RTLKLLF---WGIIL 147 (408)
Q Consensus 136 Rsl~Lfl---lGl~l 147 (408)
|+..|.. .|+++
T Consensus 96 RA~~LY~~himtl~i 110 (410)
T COG4645 96 RAMVLYVAHIMTLVI 110 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 9998876 44444
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=89.21 E-value=1.5 Score=44.84 Aligned_cols=57 Identities=16% Similarity=0.385 Sum_probs=41.8
Q ss_pred cchhhhhhhhhhcchheeeeeeCccc-cccc-cccc-cC---Cch-hhhHHHHHHHHHHHHHHH
Q 015379 60 SKRVATLDAFRGLTVVLMILVDDAGG-AYAR-IDHS-PW---NGC-TLADFVMPFFLFIVGVAI 116 (408)
Q Consensus 60 ~~Rl~SLD~lRGlai~lMIlVN~~g~-~~~~-l~Ha-~W---~G~-t~aDlvfP~FlFi~Gvsi 116 (408)
.+|+.++|.+|+++++..+.+|.... .+.. ..|. .| |++ +..-..-|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999999888887654 2322 2233 14 555 466789999999999643
No 13
>PF15345 TMEM51: Transmembrane protein 51
Probab=85.60 E-value=0.66 Score=45.15 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCccc----------------------cccCCChhHHHHHhHHHHHHHHHHHHHhhcc
Q 015379 350 WVSMGFGLLIIAIILHFTNAIPI----------------------NKQLYSFSYVCFTAGAAGIVFSALYVLVLLL 403 (408)
Q Consensus 350 l~~~G~~ll~lG~ll~~~~~~Pi----------------------NK~LWT~SfVL~T~G~a~llLa~~y~lID~~ 403 (408)
+-..|+.|+++|.++-.+.++|= +++=-|.-|||+.+|.++|+|++|.-+=|-+
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KR 84 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKR 84 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHH
Confidence 45789999999988754433442 3345677799999999999999998776654
No 14
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=81.00 E-value=0.33 Score=49.52 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=43.4
Q ss_pred hhhccchhhhhhhhhhcchheeeeeeCccccccccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015379 56 LQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKING 128 (408)
Q Consensus 56 ~~~~~~Rl~SLD~lRGlai~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~ 128 (408)
.+.+++|+.+||.+||+++++.++.|......+. +..+.+ ...+.-.+|..++|.-+.-++.++..+++
T Consensus 8 ~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~--~g~~gVdiFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 8 INSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVG--RGVLGVDLFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccc--ccccceeEeeeccHHHHHHHHHHHhhcCC
Confidence 3444689999999999999888887754321110 111111 11233345788999999998876654443
No 15
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=72.75 E-value=3.8 Score=42.20 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=46.5
Q ss_pred cchhhhhhhhhhcchheeeeeeCccccccccccccCCch---hhhHHHHHHHHHHHHHHHHHHhcccCCch---HHHHHH
Q 015379 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGC---TLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKI 133 (408)
Q Consensus 60 ~~Rl~SLD~lRGlai~lMIlVN~~g~~~~~l~Ha~W~G~---t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~---~~~~ki 133 (408)
++|-.++|+.||+-|++.++-|..+..++ |.-. -..-+-+|+|.||.|.-. |...+. +..+|-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf~-----k~~~~~~~~~~~~kk 70 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYFY-----KTEKRAKSTQYVKKK 70 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhcc-----ccccccchhhHHHHH
Confidence 58999999999999999998886553221 3221 245668999999999742 222222 556666
Q ss_pred HHHHHH
Q 015379 134 IFRTLK 139 (408)
Q Consensus 134 lrRsl~ 139 (408)
.|+.++
T Consensus 71 ~~tLiv 76 (343)
T COG3594 71 ARTLIV 76 (343)
T ss_pred HHHHHH
Confidence 666554
No 16
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=59.19 E-value=1.9e+02 Score=28.70 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHh--cccCC-c-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHH
Q 015379 103 FVMPFFLFIVGVAIALAL--KKVPK-I-NGAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIAL 178 (408)
Q Consensus 103 lvfP~FlFi~Gvsi~lsl--~r~~~-k-~~~~~kilrRsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal 178 (408)
+.+|+.+|+=|.++.=++ ++..- . .+....+---.+..-++|+++|... -.+|..-++--+++
T Consensus 29 ~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~~-------------~~i~~~~i~~~l~~ 95 (287)
T PF07760_consen 29 LGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYTP-------------WGIRLIPILISLSI 95 (287)
T ss_pred HHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CCcchhHHHHHHHH
Confidence 578999999999998888 43322 1 1223333344456677788886532 23565666666666
Q ss_pred HHHHHHHHHHHh
Q 015379 179 VYVVVALIETLT 190 (408)
Q Consensus 179 ~Y~v~all~l~~ 190 (408)
.-++.+++...-
T Consensus 96 ~t~~~~~~a~~r 107 (287)
T PF07760_consen 96 FTLVLSIIAYIR 107 (287)
T ss_pred HHHHHHHHHHHh
Confidence 666666665433
No 17
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=52.38 E-value=25 Score=36.73 Aligned_cols=237 Identities=20% Similarity=0.290 Sum_probs=130.1
Q ss_pred cchhhhhhhhhhcch----heeeeeeCcccccc-ccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Q 015379 60 SKRVATLDAFRGLTV----VLMILVDDAGGAYA-RIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKII 134 (408)
Q Consensus 60 ~~Rl~SLD~lRGlai----~lMIlVN~~g~~~~-~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~kil 134 (408)
+.|..++|..|+..+ +.+.-|+.+- || -+..++--|..+-|+-.-.|+|-.|+--. |.++| +.+
T Consensus 108 ~~~~~~it~yR~~i~~~tviaIlAvDFp~--fprRlgKsetwGtsLMDiGVGSFvynsGivs~----RaksK-----~~l 176 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIAILAVDFPF--FPRRLGKSETWGTSLMDIGVGSFVYNSGIVST----RAKSK-----RKL 176 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhheeeecccc--chHhhhhhhcccceeeecccceeEeccceeec----ccCcc-----HHH
Confidence 457788999997544 3444454432 22 13444445788999998999988886422 22222 368
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHH
Q 015379 135 FRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (408)
Q Consensus 135 rRsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLqrIal~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~ 214 (408)
|-++.|+.+|++=.- ... .+.+ .++.|=.||=.-.=+.-.+..+.+.+.+++ ....
T Consensus 177 kn~lillflGflR~f-~vk---~lny---qvhvrEyGvhwNFfftLgllnl~~~fir~r-----------------~nfl 232 (429)
T COG5062 177 KNALILLFLGFLRYF-SVK---LLNY---QVHVREYGVHWNFFFTLGLLNLASLFIRTR-----------------ANFL 232 (429)
T ss_pred HhhhHHHHHHHHHHH-HHH---Hhcc---ccccHHheeehhHHHHHHHHHHHHHHhhhh-----------------HhHH
Confidence 889999999996321 100 1111 234454455444444444445555444332 2355
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeeccCCCCCCCCCCHhHHHhhhhcCCCcccCCccccccccccCCC
Q 015379 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSS 294 (408)
Q Consensus 215 v~~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~ 294 (408)
.+..+..+|-+++-.. | + ... +|..
T Consensus 233 Lg~fi~l~he~lLkf~-------------------------~-l----------~kf------i~sa------------- 257 (429)
T COG5062 233 LGFFICLTHELLLKFF-------------------------G-L----------EKF------IYSA------------- 257 (429)
T ss_pred HHHHHHHHHHHHHHhc-------------------------c-H----------HHh------hhcC-------------
Confidence 6666767776555320 0 1 111 1111
Q ss_pred CCCCCCCCCCCCCcCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHHHHHHHhhCCCcc
Q 015379 295 PNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFG---LLIIAIILHFTNAIP 371 (408)
Q Consensus 295 p~~g~~~~~~~~~~~~~fDPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~---ll~lG~ll~~~~~~P 371 (408)
|++.- ..=.-|||.|++|-+..-+.|.-.|+++...+.. |.+.|=.++.. .+.+=.+.++. |
T Consensus 258 ~R~~i----------l~~NrEGI~sll~yisIfl~g~~tg~vvf~~kpT--r~~~wk~~~~~~af~lciylVfnf~---s 322 (429)
T COG5062 258 ARSSI----------LTSNREGITSLLPYISIFLMGADTGKVVFKKKPT--RKKAWKIIILYNAFFLCVYLVFNFY---S 322 (429)
T ss_pred chhhH----------HHhchhhhhhcchhhhheeeecccceEEecCCCc--hHHHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 11111 1127899999999999999999999998654432 33333333333 23333333432 2
Q ss_pred c-cccCCChhHHHHHhHHHHHHHHHHHHHhhc
Q 015379 372 I-NKQLYSFSYVCFTAGAAGIVFSALYVLVLL 402 (408)
Q Consensus 372 i-NK~LWT~SfVL~T~G~a~llLa~~y~lID~ 402 (408)
. ..++=...||++..-+-.+.+ ..|.++|-
T Consensus 323 ~ssRRlaNlpfv~wi~~lh~f~l-t~y~lfd~ 353 (429)
T COG5062 323 TSSRRLANLPFVMWIMLLHTFHL-TVYELFDR 353 (429)
T ss_pred cchhhhcCccHHHHHHHHHHHHh-heeeeeec
Confidence 2 677778888887765544333 33444443
No 18
>COG3619 Predicted membrane protein [Function unknown]
Probab=49.96 E-value=92 Score=30.44 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=44.3
Q ss_pred cccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhc
Q 015379 90 IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQGG 150 (408)
Q Consensus 90 l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~kilrRsl~LfllGl~l~~~ 150 (408)
.+-++++.....+...|.+.|++|+...-.++|+..| ...-.+.+...++.+++.....
T Consensus 48 i~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 48 IELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 4566677788899999999999999999888877665 2334456677777777766443
No 19
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=49.44 E-value=44 Score=36.95 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=32.9
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccccccCCChhHHHHHhHHHH
Q 015379 311 PFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAAG 390 (408)
Q Consensus 311 ~fDPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~ll~~~~~~PiNK~LWT~SfVL~T~G~a~ 390 (408)
-.||.-++.. ....++|+..|- ++-|+++++.|+++... ..-.++.+-...+++..+|++.
T Consensus 343 EiDPT~~~ai---~f~lfFGmM~gD---------------~GyGLil~l~~~~l~~~-~~k~~~~~~~~~~il~~~gi~s 403 (646)
T PRK05771 343 EIDPTPFLAI---FFPLFFGMMLGD---------------AGYGLLLLLIGLLLSFK-LKKKSEGLKRLLKILIYLGIST 403 (646)
T ss_pred CcCCccHHHH---HHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHH
Confidence 3688777643 234455665553 23444444444443321 1122333444455555555555
Q ss_pred HHHHHHH
Q 015379 391 IVFSALY 397 (408)
Q Consensus 391 llLa~~y 397 (408)
.+++++|
T Consensus 404 ii~G~ly 410 (646)
T PRK05771 404 IIWGLLT 410 (646)
T ss_pred HHHHHHH
Confidence 5555555
No 20
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=39.51 E-value=55 Score=25.59 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=25.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHH
Q 015379 316 GLLSTISAILSGTIGIHYGHVLIHF-KGHSARLKHWVSMGFGLLIIAIIL 364 (408)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~-~~~~~rl~~l~~~G~~ll~lG~ll 364 (408)
|++|.+....+.+.|+..|++=+++ ++..++-+.+...|+++..++.++
T Consensus 9 gi~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 9 GILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 3444433334555666666653221 122244445667777776666654
No 21
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=38.99 E-value=3.3e+02 Score=25.63 Aligned_cols=69 Identities=17% Similarity=0.349 Sum_probs=41.6
Q ss_pred hhhhhhhcchheeeeeeCccccccccccccCCchhhhHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Q 015379 65 TLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWG 144 (408)
Q Consensus 65 SLD~lRGlai~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~r~~~k~~~~~kilrRsl~LfllG 144 (408)
|-|.+.=+|++.|++=|-. ... ....+| -..+.-+.||+|.|++.-.+.- .+..+|.++|.. +++
T Consensus 2 s~~~LK~iA~i~M~iDHi~-~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~---~~a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIG-FLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLL---IFA 66 (219)
T ss_pred chhHHHHHHHHHHHHHhhc-ccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHH---HHH
Confidence 4577788899999775543 111 122222 1236788999999998766644 223467777754 444
Q ss_pred HHHh
Q 015379 145 IILQ 148 (408)
Q Consensus 145 l~l~ 148 (408)
++.+
T Consensus 67 lis~ 70 (219)
T PF05857_consen 67 LISQ 70 (219)
T ss_pred HHHH
Confidence 4443
No 22
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.01 E-value=22 Score=37.45 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCccccCCCCcceee--eeccCCCCCC
Q 015379 214 IGGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYI--VKCGMRGHLG 259 (408)
Q Consensus 214 ~v~~~ll~~Y~~l~~~l~vP~~~~~~~~~~~~~~~~--~~cg~~g~l~ 259 (408)
.+-..++..|..++|++-+|+||.+|++|+|-.+++ .+|-..|..+
T Consensus 296 ~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy~D 343 (549)
T KOG4683|consen 296 AVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGYAD 343 (549)
T ss_pred HHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhhhH
Confidence 344556778888999999999999999999844443 3475555443
No 23
>PF13272 DUF4063: Protein of unknown function (DUF4063)
Probab=33.29 E-value=3.3e+02 Score=23.79 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 015379 348 KHWVSMGFGLLIIAI 362 (408)
Q Consensus 348 ~~l~~~G~~ll~lG~ 362 (408)
+|-++++.+++.+|+
T Consensus 92 RRA~Ivaa~~Lav~L 106 (107)
T PF13272_consen 92 RRALIVAAAMLAVGL 106 (107)
T ss_pred HHHHHHHHHHHHhcc
Confidence 345666666666553
No 24
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=33.18 E-value=2.1e+02 Score=27.76 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHh
Q 015379 311 PFEPEGLLSTISAILSGTIGIHYGHVLI 338 (408)
Q Consensus 311 ~fDPEGlLStlpAi~t~llG~~aG~~L~ 338 (408)
.+.||+.+.....++.+++|....-...
T Consensus 168 ~~~~e~~l~N~~gl~~~~fg~~V~~~~~ 195 (214)
T cd08764 168 NLPAEGVLGNFIGIVLVIFGGLVVYLVT 195 (214)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678888888888888888888876654
No 25
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=32.02 E-value=58 Score=24.36 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCc--hHHHHHHHHH
Q 015379 105 MPFFLFIVGVAIALALKKVPKI--NGAVKKIIFR 136 (408)
Q Consensus 105 fP~FlFi~Gvsi~lsl~r~~~k--~~~~~kilrR 136 (408)
=|+|..++|++-++.+.++..+ +.....+++|
T Consensus 8 DP~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 8 DPLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 3889999999999999876544 3445555543
No 26
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=27.24 E-value=2e+02 Score=27.82 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhh------CCCccccccCCChhHHHHHhH
Q 015379 352 SMGFGLLIIAIILHF------TNAIPINKQLYSFSYVCFTAG 387 (408)
Q Consensus 352 ~~G~~ll~lG~ll~~------~~~~PiNK~LWT~SfVL~T~G 387 (408)
+.|.+++.+|+.+-+ ..++|+..+|-+....+++..
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~~~ 229 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVAFI 229 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHHHH
Confidence 566666666765532 247999999887776666543
No 27
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.12 E-value=2e+02 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=17.7
Q ss_pred CCCchhhhhHH--HHHHHHHHHHHHHHhc
Q 015379 313 EPEGLLSTISA--ILSGTIGIHYGHVLIH 339 (408)
Q Consensus 313 DPEGlLStlpA--i~t~llG~~aG~~L~~ 339 (408)
.-=|++|+|.. ++.+++|+..|++|-+
T Consensus 40 ~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 40 EGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666554 4567888888888854
No 28
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=26.41 E-value=4.4e+02 Score=23.08 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHHHHHHHHHHh
Q 015379 99 TLADFVMPFFLFIVGVAIALALKKVP---KINGAVKKIIFRTLKLLFWGIILQ 148 (408)
Q Consensus 99 t~aDlvfP~FlFi~Gvsi~lsl~r~~---~k~~~~~kilrRsl~LfllGl~l~ 148 (408)
++.+.+..+|..++|+.+.+.=-+.. +.-.......-|++..+.+|.+..
T Consensus 30 ~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~ 82 (136)
T PF08507_consen 30 SFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCL 82 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHH
Confidence 45588899999999888766522211 111345566678888888888753
No 29
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=24.15 E-value=1.7e+02 Score=31.26 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=41.3
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhhCCCccccccCCC-hhHHHHHhHHHH
Q 015379 314 PEGLLSTISAILSGTIGIHYGHVLIHFKG--HSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYS-FSYVCFTAGAAG 390 (408)
Q Consensus 314 PEGlLStlpAi~t~llG~~aG~~L~~~~~--~~~rl~~l~~~G~~ll~lG~ll~~~~~~PiNK~LWT-~SfVL~T~G~a~ 390 (408)
--|++|.+|-++..+..+.+|.+--+-+. ..++.++-+.-.+.+...|..+-. ++..++-+. .+.+++|.+.++
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~---l~~~~~~~~~~a~~~l~~~~~~ 371 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLV---LAFTSDEHRLLAVILLTIAIGL 371 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHe---eeecCCCcchHHHHHHHHHHHH
Confidence 45899999999999999999987532222 333333333334444444443322 333333333 555555554433
No 30
>PRK09848 glucuronide transporter; Provisional
Probab=24.00 E-value=1.9e+02 Score=29.59 Aligned_cols=48 Identities=13% Similarity=0.319 Sum_probs=32.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHH
Q 015379 316 GLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLL-IIAII 363 (408)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll-~lG~l 363 (408)
|++.++..+..++.....|.+.-+.+.+.-|.+.|+.+|.+.. +++.+
T Consensus 47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 47 GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 5788888888999999999887654443344555766655544 34443
No 31
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=23.09 E-value=8.2e+02 Score=24.98 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhcccC-------Cch--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHH
Q 015379 104 VMPFFLFIVGVAIALALKKVP-------KIN--GAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQ 174 (408)
Q Consensus 104 vfP~FlFi~Gvsi~lsl~r~~-------~k~--~~~~kilrRsl~LfllGl~l~~~~~~~~~~~~~~~~~~~~Ri~GVLq 174 (408)
....+.+++.....+..++.. ++. +..++.++|.+..++.-++...... +.+.--.-++|+
T Consensus 90 ~~a~~~~~~~~~~~l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~----------~~~~~~~~d~LG 159 (340)
T PF12794_consen 90 AMALFWLVFEFFRRLLRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAE----------NLPDGLARDVLG 159 (340)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCchhhhhhhHH
Confidence 334445555555555555432 121 3578888888888877777654321 122223458888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 015379 175 RIALVYVVVALIETLTT 191 (408)
Q Consensus 175 rIal~Y~v~all~l~~~ 191 (408)
|+++....+.+.+...+
T Consensus 160 rl~~ii~~~~l~~~~~~ 176 (340)
T PF12794_consen 160 RLAFIILLLLLAVFLWR 176 (340)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877766665554443
No 32
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=20.99 E-value=1e+02 Score=26.34 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhCCCccccccC
Q 015379 352 SMGFGLLIIAIILHFTNAIPINKQL 376 (408)
Q Consensus 352 ~~G~~ll~lG~ll~~~~~~PiNK~L 376 (408)
..+.++++.-..+......|+|++|
T Consensus 69 ~~a~~~~~~~~~~T~~~~~P~N~~l 93 (139)
T PF08592_consen 69 LAAAALLLSIIPFTFLVNVPINNRL 93 (139)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334433333333332359999999
No 33
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=20.91 E-value=4.1e+02 Score=22.94 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHH-HhhCCCccccccCCChhHHHHHhHHHHHHH
Q 015379 352 SMGFGLLIIAII-LHFTNAIPINKQLYSFSYVCFTAGAAGIVF 393 (408)
Q Consensus 352 ~~G~~ll~lG~l-l~~~~~~PiNK~LWT~SfVL~T~G~a~llL 393 (408)
..++++-++|++ +..+ .| ++..++|.|..++-+
T Consensus 38 ~~ALv~aiiG~~~~~vn--~~-------~~~~~~~ig~~li~~ 71 (99)
T PF09877_consen 38 KLALVLAIIGGLILAVN--SP-------SSPILYTIGAFLIGF 71 (99)
T ss_pred HHHHHHHHHHHHHHHhc--Cc-------chhHHHHHHHHHHhh
Confidence 355666677776 5553 55 788888888665543
Done!