Query 015379
Match_columns 408
No_of_seqs 198 out of 681
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 23.5 19 0.00066 23.6 0.3 28 92-119 4-31 (31)
2 2jo1_A Phospholemman; FXYD1, N 21.2 69 0.0024 24.9 3.0 30 92-121 10-39 (72)
3 2jp3_A FXYD domain-containing 19.8 65 0.0022 24.7 2.6 30 92-121 11-40 (67)
4 2zxe_G FXYD10, phospholemman-l 17.2 63 0.0022 25.2 2.0 30 92-121 13-42 (74)
5 4aps_A DI-OR tripeptide H+ sym 15.5 2.3E+02 0.0078 27.1 6.1 51 313-363 319-369 (491)
6 1pw4_A Glycerol-3-phosphate tr 13.4 6.5E+02 0.022 23.2 8.6 24 316-339 291-314 (451)
7 1pw4_A Glycerol-3-phosphate tr 12.6 7.1E+02 0.024 23.0 8.6 67 315-388 64-131 (451)
8 1jb0_J Photosystem 1 reaction 11.1 1.8E+02 0.0063 20.2 2.8 21 318-338 8-28 (41)
9 3arc_B Photosystem II core lig 8.9 6.4E+02 0.022 26.1 7.0 44 356-400 206-258 (504)
10 3o7q_A L-fucose-proton symport 8.9 5.2E+02 0.018 23.9 6.1 58 316-380 64-121 (438)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=23.46 E-value=19 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=23.1
Q ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHH
Q 015379 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (408)
Q Consensus 92 Ha~W~G~t~aDlvfP~FlFi~Gvsi~ls 119 (408)
|-.|+.+....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 5567788888899999999999988764
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.24 E-value=69 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.3
Q ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 015379 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (408)
Q Consensus 92 Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~ 121 (408)
|-.|+-+...-++|-..+|++|+.+-+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 456777888999999999999999999975
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=19.85 E-value=65 Score=24.74 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.3
Q ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 015379 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (408)
Q Consensus 92 Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~ 121 (408)
|-.|+-+...-++|-..+|++|+.+-+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 556777888999999999999999999974
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=17.20 E-value=63 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.5
Q ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 015379 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (408)
Q Consensus 92 Ha~W~G~t~aDlvfP~FlFi~Gvsi~lsl~ 121 (408)
|-.|+.+...-++|-..+|++|+.+-+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 556777889999999999999999999975
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=15.47 E-value=2.3e+02 Score=27.10 Aligned_cols=51 Identities=6% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 015379 313 EPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAII 363 (408)
Q Consensus 313 DPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~l 363 (408)
-+-|++.++.++...+.+...|.+..+...++....+.+..|.++..++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Confidence 456888999999999999999886644322222222333455555555544
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=13.36 E-value=6.5e+02 Score=23.23 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=17.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhc
Q 015379 316 GLLSTISAILSGTIGIHYGHVLIH 339 (408)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~ 339 (408)
|++.++.+++.++..+.+|.+..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~ 314 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDK 314 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776654
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=12.63 E-value=7.1e+02 Score=22.95 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=40.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccc-cccCCChhHHHHHhHH
Q 015379 315 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPI-NKQLYSFSYVCFTAGA 388 (408)
Q Consensus 315 EGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~ll~~~~~~Pi-NK~LWT~SfVL~T~G~ 388 (408)
-|++.++..+..++....+|.+..+.. + ++.+..|.++..+|.++.. ..|. ..+.|..-...+..|+
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g--~---r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN--P---RVFLPAGLILAAAVMLFMG--FVPWATSSIAVMFVLLFLCGW 131 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC--H---HHHHHHHHHHHHHHHHHHH--HCHHHHSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC--c---hHHHHHHHHHHHHHHHHHH--hhhhccccHHHHHHHHHHHHH
Confidence 468888999999998999998765432 2 2355666666666665532 1222 4566654433333333
No 8
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=11.15 E-value=1.8e+02 Score=20.18 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 015379 318 LSTISAILSGTIGIHYGHVLI 338 (408)
Q Consensus 318 LStlpAi~t~llG~~aG~~L~ 338 (408)
|||-|-+++..+++.||-++.
T Consensus 8 LstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 8 LSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 899999999999999997763
No 9
>3arc_B Photosystem II core light harvesting protein CP47; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Probab=8.91 E-value=6.4e+02 Score=26.09 Aligned_cols=44 Identities=20% Similarity=0.048 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCCccc--c-c--cCCC----hhHHHHHhHHHHHHHHHHHHHh
Q 015379 356 GLLIIAIILHFTNAIPI--N-K--QLYS----FSYVCFTAGAAGIVFSALYVLV 400 (408)
Q Consensus 356 ~ll~lG~ll~~~~~~Pi--N-K--~LWT----~SfVL~T~G~a~llLa~~y~lI 400 (408)
.+.++|.+||.. .=|- - | .+|| +||.|-..+++.++-+.++|.-
T Consensus 206 ~l~I~GGiwHI~-trP~~~~~r~~~~~SgEA~LSySLaava~~gFiAA~~~Wy~ 258 (504)
T 3arc_B 206 IVGIIAGLFHIL-VRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYG 258 (504)
T ss_dssp HHHHHHHHHHHH-SCCBHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhEEEEe-eCchHHHHHhhhcccHhhhhcccHHHHHHHHHHHhhheeec
Confidence 345777888863 2332 1 2 3688 6888888888888877777653
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=8.86 E-value=5.2e+02 Score=23.88 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=35.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccccccCCChh
Q 015379 316 GLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFS 380 (408)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~ll~~~~~~PiNK~LWT~S 380 (408)
|++.++..+..++.....|.+..+.. ++ +.+..|.++..++.++.. ..+...++|..-
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g--~r---~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 121 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLS--YK---AGIITGLFLYALGAALFW--PAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSC--HH---HHHHHHHHHHHHHHHHHH--HHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhc--ch---HHHHHHHHHHHHHHHHHH--hccccccHHHHH
Confidence 68888889988898999998775432 22 335566666666655532 113344555443
Done!