Query 015379
Match_columns 408
No_of_seqs 198 out of 681
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 11:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015379.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015379hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 18.2 1.9E+02 0.014 24.4 8.4 24 316-339 288-311 (447)
2 d1jb0j_ f.23.18.1 (J:) Subunit 17.0 48 0.0035 21.4 2.8 20 318-337 8-27 (41)
3 d1v54c_ f.25.1.1 (C:) Mitochon 11.6 4.1E+02 0.03 22.4 9.7 75 311-386 121-200 (259)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 9.0 4.8E+02 0.035 21.5 8.4 25 315-339 61-85 (447)
5 d1pv7a_ f.38.1.2 (A:) Lactose 8.4 2.8E+02 0.02 22.3 6.1 42 318-364 264-305 (417)
6 d3d31c1 f.58.1.1 (C:13-260) Su 8.0 4.8E+02 0.035 20.7 9.2 34 317-350 54-87 (248)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 7.1 1.5E+02 0.011 17.3 2.5 15 378-392 3-17 (30)
8 d1rkla_ f.23.30.1 (A:) Oligosa 7.1 2.7E+02 0.019 16.9 3.7 26 383-408 11-36 (36)
9 d1m56c_ f.25.1.1 (C:) Bacteria 5.8 7.1E+02 0.052 20.6 10.0 18 369-386 189-206 (265)
10 d1pv7a_ f.38.1.2 (A:) Lactose 5.3 3.5E+02 0.025 21.6 5.0 25 316-340 46-70 (417)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.15 E-value=1.9e+02 Score=24.45 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=14.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhc
Q 015379 316 GLLSTISAILSGTIGIHYGHVLIH 339 (408)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~ 339 (408)
+.+.++..+..++..+.+|.+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhhhhhhhhhhhhhhh
Confidence 456666666666666666665544
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=16.96 E-value=48 Score=21.41 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 015379 318 LSTISAILSGTIGIHYGHVL 337 (408)
Q Consensus 318 LStlpAi~t~llG~~aG~~L 337 (408)
|||-|-+++..+++.||-++
T Consensus 8 lstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999776
No 3
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.56 E-value=4.1e+02 Score=22.38 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=41.6
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHh---h-CCCccccccCCChhHHHHH
Q 015379 311 PFEPEGLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIILH---F-TNAIPINKQLYSFSYVCFT 385 (408)
Q Consensus 311 ~fDPEGlLStlpAi~t~llG~~aG~~L~~-~~~~~~rl~~l~~~G~~ll~lG~ll~---~-~~~~PiNK~LWT~SfVL~T 385 (408)
+.||.+ +..+++++...-|+.+..-... +++++++.++++...+++.++-.... + ...+.++.+.+.++|-+.|
T Consensus 121 ~~~~~~-lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLE-VPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTS-HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 445554 3455555655556554433322 23344555666666555544444332 1 1256778888888887777
Q ss_pred h
Q 015379 386 A 386 (408)
Q Consensus 386 ~ 386 (408)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 6
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.00 E-value=4.8e+02 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=20.4
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhc
Q 015379 315 EGLLSTISAILSGTIGIHYGHVLIH 339 (408)
Q Consensus 315 EGlLStlpAi~t~llG~~aG~~L~~ 339 (408)
-|++.++..+..++.....|.+..+
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888899987754
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.43 E-value=2.8e+02 Score=22.30 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 015379 318 LSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 364 (408)
Q Consensus 318 LStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l~~~G~~ll~lG~ll 364 (408)
..++.+++..+.+...|++..+ ...++.+..+.++..++.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r-----~~~~~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHH-----HCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcc-----cccccchhhhHHHHHHhhhc
Confidence 3344444444444445544421 11223444454444444443
No 6
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=8.03 E-value=4.8e+02 Score=20.69 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 015379 317 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHW 350 (408)
Q Consensus 317 lLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~l 350 (408)
.++.++++.++++|+..+-.+.+++.+.+|....
T Consensus 54 ~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~ 87 (248)
T d3d31c1 54 YAGFLATLLALLLGAPTGYILARFDFPGKRLVES 87 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 4677788888899999998886555544554443
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.11 E-value=1.5e+02 Score=17.26 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.8
Q ss_pred ChhHHHHHhHHHHHH
Q 015379 378 SFSYVCFTAGAAGIV 392 (408)
Q Consensus 378 T~SfVL~T~G~a~ll 392 (408)
|..||++-+.+..++
T Consensus 3 ~i~yv~ifac~i~lf 17 (30)
T d2axtt1 3 TITYVFIFACIIALF 17 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 456777766554443
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.08 E-value=2.7e+02 Score=16.90 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHHHHhhccccCCC
Q 015379 383 CFTAGAAGIVFSALYVLVLLLINPTN 408 (408)
Q Consensus 383 L~T~G~a~llLa~~y~lID~~~~~~~ 408 (408)
.++-|.....|.+.|-.+|--+.|.|
T Consensus 11 ~i~fgi~mmtliviyh~~~st~s~k~ 36 (36)
T d1rkla_ 11 AITFGIVMMTLIVIYHAVDSTMSPKN 36 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCC
T ss_pred EeehhHHHHHHHHHHhhhccccCCCC
Confidence 45678888888899999888887765
No 9
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.76 E-value=7.1e+02 Score=20.59 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.7
Q ss_pred CccccccCCChhHHHHHh
Q 015379 369 AIPINKQLYSFSYVCFTA 386 (408)
Q Consensus 369 ~~PiNK~LWT~SfVL~T~ 386 (408)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 577888999998888775
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.33 E-value=3.5e+02 Score=21.65 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 015379 316 GLLSTISAILSGTIGIHYGHVLIHF 340 (408)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~ 340 (408)
|++.++..+...+.....|.+..+.
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999999877543
Done!