BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015381
         (408 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13Q76|HBOH_BURXL D-(-)-3-hydroxybutyrate oligomer hydrolase OS=Burkholderia
           xenovorans (strain LB400) GN=Bxeno_B0795 PE=3 SV=1
          Length = 707

 Score = 36.6 bits (83), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 127 AGCSCRATIWTKTESPPGYSSSSTLDSSPEPERVQENCHRSDHVLVTESFDNMVAWSSSC 186
           AG SC  T+WT            TL  S +  RV  N H    ++V    D +V  + + 
Sbjct: 544 AGASCLRTLWTN----------GTLTGSVDAIRVNANLHGKPAIIVQGRADALVPINHAS 593

Query: 187 R----CNKISSDNAKDIKVVDVDKIASVDKNLGKLDGFDS 222
           R     N++S   A  +   +V      D  LG + GFDS
Sbjct: 594 RPYLGLNQLSEGAASRLSFYEVTNAQHFDAFLG-VAGFDS 632


>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
           (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
           M139) GN=spb1 PE=3 SV=1
          Length = 806

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 140 ESPPGYSSSSTLDSSPEPERVQENCHRSDHVLVTESFDNMVAWSSSCRCN---KISSDNA 196
           + P G  + +TLD  PE      NC     VL  + F N++ W    R      +    A
Sbjct: 280 QQPGGDLALATLDRLPETTDEIRNCCEDLKVLGKKEFRNLLRWRLKVREKFGLVVKKGQA 339

Query: 197 KDIKVVDVDKIASVDKNLG 215
           KD +  +V +IA +D  L 
Sbjct: 340 KDDEAEEVAEIAPMDDELA 358


>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia sclerotiorum (strain
           ATCC 18683 / 1980 / Ss-1) GN=mph1 PE=3 SV=1
          Length = 1235

 Score = 32.0 bits (71), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 9   SDMMPNAWFYRLKDMGKARSHNSTSTNTQSVKKKQQPSKSASTTTTQQQAKNHQSQYPRK 68
           +D MP++  YR++     R   S     +      QPS   S  T Q+Q   H  Q P  
Sbjct: 95  ADEMPDSSPYRIRGPIYKRPRRSPPMELEQKSSPAQPSMVESAKT-QKQNIVHSPQ-PTA 152

Query: 69  SYYFTREL--TPSDRFYNSPTKTK 90
            Y F+REL   PSD F  SP + +
Sbjct: 153 QYDFSRELEDLPSDAFSPSPPQLR 176


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.124    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,591,785
Number of Sequences: 539616
Number of extensions: 5895144
Number of successful extensions: 25466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 22990
Number of HSP's gapped (non-prelim): 1974
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)