Query 015381
Match_columns 408
No_of_seqs 135 out of 230
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 11:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ion_A PDCD4, programmed cell 57.9 13 0.00044 32.2 4.9 47 347-395 3-49 (152)
2 2rg8_A Programmed cell death p 57.1 18 0.00063 31.6 5.9 47 348-396 5-51 (165)
3 2nsz_A Programmed cell death p 57.0 14 0.00046 31.0 4.8 45 348-394 2-46 (129)
4 2c0s_A Conserved domain protei 31.1 58 0.002 25.1 4.2 34 350-383 11-50 (64)
5 2bzb_A Conserved domain protei 27.5 45 0.0015 25.5 3.0 35 350-384 11-51 (62)
6 2zu6_B Programmed cell death p 26.9 91 0.0031 29.8 5.8 48 347-396 160-207 (307)
7 3bqs_A Uncharacterized protein 26.0 96 0.0033 25.1 4.9 47 354-401 14-62 (93)
8 1ug3_A EIF4GI, eukaryotic prot 25.7 1E+02 0.0035 29.3 5.8 45 348-395 6-51 (339)
9 3eiq_C Programmed cell death p 25.2 63 0.0021 31.8 4.4 46 350-397 51-96 (358)
10 1ugp_A NitrIle hydratase alpha 21.5 91 0.0031 29.2 4.4 50 347-396 14-64 (203)
11 2zzd_C Thiocyanate hydrolase s 21.0 71 0.0024 30.6 3.6 49 348-396 23-74 (243)
No 1
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.85 E-value=13 Score=32.25 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHH
Q 015381 347 DPQRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFK 395 (408)
Q Consensus 347 DPy~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~ 395 (408)
.|-++|++.|..+|.|-= ...|++|-+.|.-.||.+.+|..+|.-.+
T Consensus 3 ~~~eel~kki~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~~i 49 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAI 49 (152)
T ss_dssp CCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 577899999999998741 12489999999999998888876665433
No 2
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=57.05 E-value=18 Score=31.60 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHHH
Q 015381 348 PQRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFKQ 396 (408)
Q Consensus 348 Py~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~d 396 (408)
+.++|++.+..+|.|- ..-.|++|.+.|.=.||++.+|..+|+..+.
T Consensus 5 s~ee~~kk~~~ii~EY--f~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~ 51 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 51 (165)
T ss_dssp SHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCSGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 4678999999999874 1124899999999999999999988876654
No 3
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.99 E-value=14 Score=31.02 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHH
Q 015381 348 PQRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVF 394 (408)
Q Consensus 348 Py~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF 394 (408)
|-++|++.|..+|.|-= ...|++|-..|.=.||.+.+|..+|.-.
T Consensus 2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~ 46 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEA 46 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 66789999999998741 1248999999999999888887665543
No 4
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=31.06 E-value=58 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCCCCCch------hHHHHHHHHHhcCC
Q 015381 350 RDFRESMVEMIVENNIRASK------DLEDLLACYLSLNS 383 (408)
Q Consensus 350 ~DFR~SM~EMI~e~~i~~~~------dLEELL~CYLsLNs 383 (408)
+.-|+-|.+.+...|+.+++ +|-.||..|..+..
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~ 50 (64)
T 2c0s_A 11 EAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKT 50 (64)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999998876 79999999987643
No 5
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=27.46 E-value=45 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.500 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHCCCCCch------hHHHHHHHHHhcCCC
Q 015381 350 RDFRESMVEMIVENNIRASK------DLEDLLACYLSLNSD 384 (408)
Q Consensus 350 ~DFR~SM~EMI~e~~i~~~~------dLEELL~CYLsLNs~ 384 (408)
+.-|+-|.+.+...|+.+++ +|-.||..|..+...
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 11 ENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34688899999999988765 799999999998754
No 6
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.86 E-value=91 Score=29.83 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHHH
Q 015381 347 DPQRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFKQ 396 (408)
Q Consensus 347 DPy~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~d 396 (408)
-|-.+|++-|.++|.|-- ...|++|-..|.-.||.+.+|..+|.....
T Consensus 160 ~~~eelkkki~~lL~EY~--~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~ 207 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAII 207 (307)
T ss_dssp SCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 467899999999998842 124999999999999988888776665443
No 7
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=26.04 E-value=96 Score=25.14 Aligned_cols=47 Identities=9% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCCchhHHHH--HHHHHhcCCCcchhhHHHHHHHHHHHh
Q 015381 354 ESMVEMIVENNIRASKDLEDL--LACYLSLNSDEYHELIIKVFKQIWFDL 401 (408)
Q Consensus 354 ~SM~EMI~e~~i~~~~dLEEL--L~CYLsLNs~e~H~~Iv~AF~dIw~~L 401 (408)
..|++|...-||.+.++|.++ .++|+.|-...+...+ .+|-.+--++
T Consensus 14 ~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~-~~L~aL~gAi 62 (93)
T 3bqs_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCM-SELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCH-HHHHHHHHHH
Confidence 468999999999999999877 7899999877444443 5555543333
No 8
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.72 E-value=1e+02 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHC-CCCCchhHHHHHHHHHhcCCCcchhhHHHHHH
Q 015381 348 PQRDFRESMVEMIVEN-NIRASKDLEDLLACYLSLNSDEYHELIIKVFK 395 (408)
Q Consensus 348 Py~DFR~SM~EMI~e~-~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~ 395 (408)
+-++|++-|..+|.|- .. .|++|.+.|.-.||.+.+|..+|....
T Consensus 6 s~ee~~k~~~~ll~Ey~~~---~d~~Ea~~ci~el~~p~~~~~~v~~~i 51 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHL---NDMKEAVQCVQELASPSLLFIFVRHGV 51 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHTTCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4567888888888763 22 388899999999999977766655443
No 9
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.22 E-value=63 Score=31.83 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 015381 350 RDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFKQI 397 (408)
Q Consensus 350 ~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~dI 397 (408)
++|++-...+|.|- ....|++|.+.|.-.||.+.+|..+|+.++..
T Consensus 51 ee~~k~~~~ii~EY--f~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 69999998888874 22358999999999999999998888766553
No 10
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=21.46 E-value=91 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhc-CCCcchhhHHHHHHH
Q 015381 347 DPQRDFRESMVEMIVENNIRASKDLEDLLACYLSL-NSDEYHELIIKVFKQ 396 (408)
Q Consensus 347 DPy~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsL-Ns~e~H~~Iv~AF~d 396 (408)
.+..++-.-+++++.++|+.+.++++.++..|-.. .+..--++|-+|..|
T Consensus 14 ~~~~~r~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~D 64 (203)
T 1ugp_A 14 KEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCC
Confidence 45778889999999999999999999999999988 444445555565544
No 11
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=21.04 E-value=71 Score=30.65 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=36.6
Q ss_pred hHHHHHH---HHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHHH
Q 015381 348 PQRDFRE---SMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFKQ 396 (408)
Q Consensus 348 Py~DFR~---SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~d 396 (408)
+..+|-. -+++++.|+|+.+.++|+.++..|-...+..=-+++-+|..|
T Consensus 23 ~~~~~~~~~~AL~~lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D 74 (243)
T 2zzd_C 23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD 74 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC
Confidence 3445554 889999999999999999999999999444444455555443
Done!