Query 015381
Match_columns 408
No_of_seqs 135 out of 230
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 11:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015381.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015381hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 55.9 3.9 0.00028 32.5 3.3 47 348-396 2-48 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 41.1 20 0.0014 29.7 5.6 47 349-397 6-52 (193)
3 d1ugpa_ d.149.1.1 (A:) Cobalt- 18.8 39 0.0029 29.4 3.5 44 353-396 20-64 (203)
4 d2qdya1 d.149.1.1 (A:10-206) I 18.4 57 0.0042 28.2 4.5 52 345-396 6-58 (197)
5 d1t3ta1 a.5.10.1 (A:153-220) F 17.4 96 0.007 22.4 5.0 47 353-400 16-63 (68)
6 d1v29a_ d.149.1.1 (A:) Cobalt- 17.1 37 0.0027 29.6 3.0 50 347-396 10-63 (203)
7 d1v29b_ b.34.4.4 (B:) Cobalt-c 15.0 92 0.0067 26.9 5.1 41 347-387 71-111 (229)
8 d3c8ya2 d.15.4.2 (A:1-126) Fe- 13.0 87 0.0064 24.7 4.0 44 335-379 66-117 (126)
9 d1qapa1 c.1.17.1 (A:130-296) Q 12.7 25 0.0018 29.2 0.6 7 4-10 45-51 (167)
10 d2fj6a1 a.60.15.1 (A:1-74) Hyp 12.6 61 0.0044 24.1 2.7 51 345-401 16-67 (74)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.86 E-value=3.9 Score=32.45 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHHH
Q 015381 348 PQRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFKQ 396 (408)
Q Consensus 348 Py~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~d 396 (408)
|-..+++.|..||.|-- .-.|++|.+.|.-.||.+.+|..+|.....
T Consensus 2 pv~~l~kk~~~ll~EY~--~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~ 48 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV 48 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 44568889999998743 346899999999999999877766654443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.14 E-value=20 Score=29.67 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 015381 349 QRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHELIIKVFKQI 397 (408)
Q Consensus 349 y~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~dI 397 (408)
-+||++-+..+|.|-= .-.|+.|.+.|.=.||.+.+|..+|......
T Consensus 6 ~ee~~kk~~~il~Ey~--~~~D~~Ea~~~l~el~~p~~~~~~V~~~i~~ 52 (193)
T d1ug3a1 6 EEELEKKSKAIIEEYL--HLNDMKEAVQCVQELASPSLLFIFVRHGVES 52 (193)
T ss_dssp HHHHHHHHHHHHHHHH--HHCCHHHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 3688888889988721 1238899999999999988887777655543
No 3
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=18.76 E-value=39 Score=29.44 Aligned_cols=44 Identities=11% Similarity=0.315 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHh-cCCCcchhhHHHHHHH
Q 015381 353 RESMVEMIVENNIRASKDLEDLLACYLS-LNSDEYHELIIKVFKQ 396 (408)
Q Consensus 353 R~SM~EMI~e~~i~~~~dLEELL~CYLs-LNs~e~H~~Iv~AF~d 396 (408)
-+.+++.+.|+|+.+.+++.+++..|-. +.+..=-++|-+|.+|
T Consensus 20 vkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D 64 (203)
T d1ugpa_ 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC
Confidence 3567888889999999999999999997 5666656677776554
No 4
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=18.38 E-value=57 Score=28.20 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=40.3
Q ss_pred cCChHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhc-CCCcchhhHHHHHHH
Q 015381 345 SFDPQRDFRESMVEMIVENNIRASKDLEDLLACYLSL-NSDEYHELIIKVFKQ 396 (408)
Q Consensus 345 S~DPy~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsL-Ns~e~H~~Iv~AF~d 396 (408)
..+|..+=-+.+++++.|+|+.+.+++..++..|-.= .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 4578888889999999999999999999999999765 333334555555444
No 5
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain {Salmonella typhimurium [TaxId: 90371]}
Probab=17.35 E-value=96 Score=22.37 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCC-CchhHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 015381 353 RESMVEMIVENNIR-ASKDLEDLLACYLSLNSDEYHELIIKVFKQIWFD 400 (408)
Q Consensus 353 R~SM~EMI~e~~i~-~~~dLEELL~CYLsLNs~e~H~~Iv~AF~dIw~~ 400 (408)
.+.+++...+.|+. +.+||+-|...|..++-.-. .+=|..|+++|.+
T Consensus 16 ~~~L~~~n~~~gLaL~~~e~~~i~~~f~~~~R~PT-d~EL~~~aQ~nSE 63 (68)
T d1t3ta1 16 RQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPN-DIELYMFAQANSE 63 (68)
T ss_dssp THHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSCCB-HHHHHHHHHHTSH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHhhhhhh
Confidence 35567777888885 78899999999999875433 6778899999965
No 6
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=17.11 E-value=37 Score=29.59 Aligned_cols=50 Identities=16% Similarity=0.362 Sum_probs=38.0
Q ss_pred ChHHHH---HHHHHHHHHHCCCCCchhHHHHHHHHHh-cCCCcchhhHHHHHHH
Q 015381 347 DPQRDF---RESMVEMIVENNIRASKDLEDLLACYLS-LNSDEYHELIIKVFKQ 396 (408)
Q Consensus 347 DPy~DF---R~SM~EMI~e~~i~~~~dLEELL~CYLs-LNs~e~H~~Iv~AF~d 396 (408)
.|..|| -+.|++.+.|+|+.+.++|.+++..|-. +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 355664 4567788889999999999999999997 4666666666666443
No 7
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=15.00 E-value=92 Score=26.89 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHhcCCCcch
Q 015381 347 DPQRDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDEYH 387 (408)
Q Consensus 347 DPy~DFR~SM~EMI~e~~i~~~~dLEELL~CYLsLNs~e~H 387 (408)
+=|+-+...|+.+++++|+.+.++|++-.+.++..-....|
T Consensus 71 sYYe~Wl~ale~lLvekG~it~~EL~~r~~~~~a~p~~~~~ 111 (229)
T d1v29b_ 71 SYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDTKIQ 111 (229)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCTTCCCC
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcccCCccccc
Confidence 46888999999999999999999999999999886544433
No 8
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=12.99 E-value=87 Score=24.68 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=31.6
Q ss_pred CCCeEEEEeecCChHHHHHHHHHHHHHHCCCCCch--------hHHHHHHHHH
Q 015381 335 LSDSFAIVKSSFDPQRDFRESMVEMIVENNIRASK--------DLEDLLACYL 379 (408)
Q Consensus 335 ~~~svAVvk~S~DPy~DFR~SM~EMI~e~~i~~~~--------dLEELL~CYL 379 (408)
+.+|..|...|.. -.+.|+.++|+|.++.-.+.. +|++|..-|=
T Consensus 66 v~~GM~V~T~s~~-v~~~Rr~~le~ll~~H~~dC~~C~~~g~CeLq~~~~~yg 117 (126)
T d3c8ya2 66 IEDGMIINTNSDA-VNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYK 117 (126)
T ss_dssp CCTTCEEESSCHH-HHHHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHT
T ss_pred CCCCCEEEeCCHH-HHHHHHHHHHHHHhcCCCcCCCCCCCCCcHHHHHHHHHC
Confidence 6777777666544 569999999999987543322 6898887664
No 9
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=12.74 E-value=25 Score=29.23 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=2.6
Q ss_pred CcccccC
Q 015381 4 HRFRFSD 10 (408)
Q Consensus 4 ~rFrLSD 10 (408)
|||-|||
T Consensus 45 HR~gLsd 51 (167)
T d1qapa1 45 HRLGLTD 51 (167)
T ss_dssp CCSSSSS
T ss_pred ccCCCcc
Confidence 3333333
No 10
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=12.55 E-value=61 Score=24.05 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=34.3
Q ss_pred cCChHHHHHHHHHHHHHHCCC-CCchhHHHHHHHHHhcCCCcchhhHHHHHHHHHHHh
Q 015381 345 SFDPQRDFRESMVEMIVENNI-RASKDLEDLLACYLSLNSDEYHELIIKVFKQIWFDL 401 (408)
Q Consensus 345 S~DPy~DFR~SM~EMI~e~~i-~~~~dLEELL~CYLsLNs~e~H~~Iv~AF~dIw~~L 401 (408)
+.||-.||-+-+- ..... ...+|-+||. -||.+|+. |-..+.+|-++|..-
T Consensus 16 ~~d~i~~lA~~a~---~D~~FPK~s~d~~eiS-~YLE~n~~--~l~sm~~FD~aW~~Y 67 (74)
T d2fj6a1 16 PKDSISEFANQAY---EDHSFPKTSTDYHEIS-SYLELNAD--YLHTMATFDEAWDQY 67 (74)
T ss_dssp CCSHHHHHHHHHH---TCTTSCTTCCCHHHHH-HHHHTSHH--HHTTHHHHHHHHHHH
T ss_pred CCChHHHHHHHHh---cCcCCCCCCCCHHHHH-HHHHHccc--ccchHHHHHHHHHHH
Confidence 5688888865432 22222 2445677765 89999974 566789999999763
Done!