BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015383
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae
          Length = 196

 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 10/184 (5%)

Query: 40  HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLK 99
           H+L KELQLYFDKI    +S   S +   A+  L  +SGL  LVPYF   ISE + +S K
Sbjct: 3   HMLPKELQLYFDKI----LSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISELILKSFK 58

Query: 100 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159
              +L   + +  SL++N H+ I+PYLHQ++PS++TC++ K + +       D+R   AD
Sbjct: 59  EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSAD 112

Query: 160 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 219
           ++  I   +   Y+ L  RV +TL   ++DP +S    YGA+  L+ L  +VV+ +I  +
Sbjct: 113 IVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREH 172

Query: 220 LELY 223
            E Y
Sbjct: 173 AEEY 176


>pdb|2PGH|B Chain B, Structure Determination Of Aquomet Porcine Hemoglobin At
           2.8 Angstrom Resolution
 pdb|2PGH|D Chain D, Structure Determination Of Aquomet Porcine Hemoglobin At
           2.8 Angstrom Resolution
 pdb|1QPW|B Chain B, Crystal Structure Determination Of Porcine Hemoglobin At
           1.8a Resolution
 pdb|1QPW|D Chain D, Crystal Structure Determination Of Porcine Hemoglobin At
           1.8a Resolution
          Length = 146

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 96  RSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 155
           + L N    FA +    S L    +H++P   +++ +VI  ++++RLG+ F+    D++ 
Sbjct: 76  KHLDNLKGTFAKL----SELHCDQLHVDPENFRLLGNVIVVVLARRLGHDFNP---DVQA 128

Query: 156 FVADLIASICTRFGHVYQ 173
               ++A +     H Y 
Sbjct: 129 AFQKVVAGVANALAHKYH 146


>pdb|4F4O|B Chain B, Structure Of The Haptoglobin-Haemoglobin Complex
 pdb|4F4O|E Chain E, Structure Of The Haptoglobin-Haemoglobin Complex
 pdb|4F4O|H Chain H, Structure Of The Haptoglobin-Haemoglobin Complex
 pdb|4F4O|K Chain K, Structure Of The Haptoglobin-Haemoglobin Complex
          Length = 146

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 96  RSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 155
           + L N    FA +    S L    +H++P   +++ +VI  ++++RLG+ F+ N   ++ 
Sbjct: 76  KHLDNLKGTFAKL----SELHCDQLHVDPENFRLLGNVIVVVLARRLGHDFNPN---VQA 128

Query: 156 FVADLIASICTRFGHVYQ 173
               ++A +     H Y 
Sbjct: 129 AFQKVVAGVANALAHKYH 146


>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
          Length = 348

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 317 PVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKE 376
           P+ SM  +M G   G    ++   + + +L+H++N+K+L  E ++ A+   T++      
Sbjct: 111 PLKSMMSDMTGSIPG----IDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDT--- 163

Query: 377 DAEGGHLL 384
            A  GH L
Sbjct: 164 -APTGHTL 170


>pdb|1XQ5|B Chain B, Met-Perch Hemoglobin At 1.9a
 pdb|1XQ5|D Chain D, Met-Perch Hemoglobin At 1.9a
 pdb|3BJ1|B Chain B, Met-Perch Hemoglobin At Ph 5.7
 pdb|3BJ1|D Chain D, Met-Perch Hemoglobin At Ph 5.7
 pdb|3BJ2|B Chain B, Met-Perch Hemoglobin At Ph 6.3
 pdb|3BJ2|D Chain D, Met-Perch Hemoglobin At Ph 6.3
 pdb|3BJ3|B Chain B, Met-Perch Hemoglobin At Ph 8.0
 pdb|3BJ3|D Chain D, Met-Perch Hemoglobin At Ph 8.0
          Length = 146

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 80  HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVS 139
           +P++      I   + R++KN   + A      S+L +  +H++P   +++   +T +V+
Sbjct: 57  NPMIAKHGTTILHGLDRAVKNMDNIKA-TYAELSVLHSEKLHVDPDNFKLLSDCLTIVVA 115

Query: 140 KRLGNRFS 147
            +LG  FS
Sbjct: 116 AQLGKAFS 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,173,849
Number of Sequences: 62578
Number of extensions: 417201
Number of successful extensions: 987
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 7
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)