BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015383
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf6 PE=1 SV=1
Length = 452
Score = 198 bits (503), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 156/241 (64%), Gaps = 12/241 (4%)
Query: 15 TAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLA 74
TA + R D +V+I+ V+HVLSKELQLYF++I + +N + AL SL
Sbjct: 167 TAAKEARNGVTSMD--NVEIKPLVRHVLSKELQLYFERITSALLDETNVELRDAALSSLR 224
Query: 75 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVI 134
D GLH L+PYF F+S+ VTR+L N +L LM +A +LL NP++ +EPY+ Q+MPS++
Sbjct: 225 DDPGLHQLLPYFIMFLSDSVTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYVQQLMPSIL 284
Query: 135 TCLVSKRLGNRFSDN-HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS 193
TCLV+KRLG+ +++ H+ LR+ A L+ +C RFG+VY L+ RVTRT L AFLD TK
Sbjct: 285 TCLVAKRLGSDPNNHEHYALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKP 344
Query: 194 LSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 253
S HYGAI+GL +G + +L++PN+++Y E+L+ K +++ +Y A +
Sbjct: 345 YSTHYGAIKGLKTMGKEAIRVLVVPNIKVY------EVLVRKT---LEKGNEEEIYEANK 395
Query: 254 C 254
C
Sbjct: 396 C 396
>sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis
GN=taf6 PE=2 SV=3
Length = 618
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 4/184 (2%)
Query: 40 HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL- 98
H LS E QLY+ +I E V S +AL S+A D GL+ ++P F+ FISE V ++
Sbjct: 207 HELSVEQQLYYKEITEACVG-SCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVV 265
Query: 99 -KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFS-DNHWDLRNF 156
N +LL LMR+ ++L+ NP +++E YLH+++P+V+TC+VS++L R DNHW LR+F
Sbjct: 266 QNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAVMTCIVSRQLCLRPDVDNHWALRDF 325
Query: 157 VADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI 216
A LIA IC F N+QSR+T+T ++D + YG+I GLA LGP VV LI
Sbjct: 326 AARLIAQICKNFSTTTNNIQSRITKTFTKTWVDDRTPWTTRYGSIAGLAELGPDVVKTLI 385
Query: 217 LPNL 220
+P L
Sbjct: 386 VPRL 389
>sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila
melanogaster GN=Taf6 PE=1 SV=2
Length = 606
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 4/205 (1%)
Query: 31 SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFI 90
++ ++ H LS E QLY+ +I E V S+ +AL SL D GLH ++P FI
Sbjct: 200 TIHVKQLATHELSVEQQLYYKEITEACVG-SDEPRRGEALQSLGSDPGLHEMLPRMCTFI 258
Query: 91 SEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFS- 147
+E V ++ N +LL LMR+ R+LL NP + +E YLH+++PSV+TC+VSK+L R
Sbjct: 259 AEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELIPSVMTCIVSKQLCMRPEL 318
Query: 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207
DNHW LR+F + L+A IC F + NLQ+RVTR A + LS YG+I GL+ L
Sbjct: 319 DNHWALRDFASRLMAQICKNFNTLTNNLQTRVTRIFSKALQNDKTHLSSLYGSIAGLSEL 378
Query: 208 GPSVVHLLILPNLELYLKFLEPEML 232
G V+ + I+P L+ + +EP +L
Sbjct: 379 GGEVIKVFIIPRLKFISERIEPHLL 403
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus
norvegicus GN=Taf6 PE=2 SV=1
Length = 678
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 129/213 (60%), Gaps = 8/213 (3%)
Query: 16 AVSDGRRSEYRE----DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALL 71
A +DG+ E + +G ++ H LS E QLY+ +I E V S +AL
Sbjct: 186 AAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQ 244
Query: 72 SLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQM 129
S+A D GL+ ++P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E Y+H++
Sbjct: 245 SIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHEL 304
Query: 130 MPSVITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 188
+P+V+TC+VS++L R DNHW LR+F A L+A IC F N+QSR+T+T +++
Sbjct: 305 IPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWV 364
Query: 189 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLE 221
D + YG+I GLA LG V+ LILP L+
Sbjct: 365 DEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQ 397
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus
GN=Taf6 PE=2 SV=1
Length = 678
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 129/213 (60%), Gaps = 8/213 (3%)
Query: 16 AVSDGRRSEYRE----DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALL 71
A +DG+ E + +G ++ H LS E QLY+ +I E V S +AL
Sbjct: 186 AAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQ 244
Query: 72 SLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQM 129
S+A D GL+ ++P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E Y+H++
Sbjct: 245 SIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHEL 304
Query: 130 MPSVITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 188
+P+V+TC+VS++L R DNHW LR+F A L+A IC F N+QSR+T+T +++
Sbjct: 305 IPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWV 364
Query: 189 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLE 221
D + YG+I GLA LG V+ LILP L+
Sbjct: 365 DEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQ 397
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens
GN=TAF6 PE=1 SV=1
Length = 677
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 129/212 (60%), Gaps = 8/212 (3%)
Query: 17 VSDGRRSEYRE----DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLS 72
+DG+ E + +G + ++ H LS E QLY+ +I E V S +AL S
Sbjct: 187 TADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQS 245
Query: 73 LAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 130
+A D GL+ ++P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E Y+H+++
Sbjct: 246 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI 305
Query: 131 PSVITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 189
P+V+TC+VS++L R DNHW LR+F A L+A IC F N+QSR+T+T +++D
Sbjct: 306 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 365
Query: 190 PTKSLSQHYGAIQGLAALGPSVVHLLILPNLE 221
+ YG+I GLA LG V+ LILP L+
Sbjct: 366 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQ 397
>sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1
SV=1
Length = 516
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 130/220 (59%), Gaps = 20/220 (9%)
Query: 12 TVLTAVSDGRRSEYRED---GISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQ 68
T +V+D S++ + G + +++ VKHVLSKELQ+YF+K+ ++S + Q
Sbjct: 186 TASASVTDTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQ 245
Query: 69 -----ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE 123
AL SL DSGLH LVPYF FI+E++T++L + LL ++ + SLL N I ++
Sbjct: 246 HMKQAALTSLRTDSGLHQLVPYFIQFIAEQITQNLSDLQLLTTILEMIYSLLSNTSIFLD 305
Query: 124 PYLHQMMPSVITCLVSKRLGNRFSDNHWD-----------LRNFVADLIASICTRFGHVY 172
PY+H +MPS++T L++K+LG D+ LR+F A L+ + +F Y
Sbjct: 306 PYIHSLMPSILTLLLAKKLGGSPKDDSPQEIHEFLERTNALRDFAASLLDYVLKKFPQAY 365
Query: 173 QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV 211
++L+ RVTRTLL FLD + +YG ++G++ L G S+
Sbjct: 366 KSLKPRVTRTLLKTFLDINRVFGTYYGCLKGVSVLEGESI 405
>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2
SV=1
Length = 616
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 5/216 (2%)
Query: 42 LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNF 101
L+ +L Y+ ++ + + + K AL L +S + L+PYF Y +S V +
Sbjct: 153 LTDDLLKYYQQVTRAVLG-DDPQLMKVALQDLQTNSKIAALLPYFVYVVSG-VKSVSHDL 210
Query: 102 SLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLG--NRFSDNHWDLRNFVAD 159
L L++VARSL+RNPH+ + PY+ ++ SV+ C++ N +D HW LR+ A
Sbjct: 211 EQLHRLLQVARSLIRNPHLCLGPYVRSLVGSVLYCVLEPLAASINPLND-HWTLRDGAAL 269
Query: 160 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 219
L++ I G + L ++ +L DP + L HYGA+ GL ALG V ++ P+
Sbjct: 270 LLSHIFWTHGDLVSGLYQQILLSLQKVLTDPVRPLCSHYGAVVGLHALGWKAVERVLYPH 329
Query: 220 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA 255
L Y L+ + N + + +VYGA+ A
Sbjct: 330 LPTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVA 365
>sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1
SV=1
Length = 622
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 5/216 (2%)
Query: 42 LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNF 101
L+ +L Y+ ++ + + + K AL L +S + L+PYF Y +S V +
Sbjct: 153 LTDDLLKYYHQVTRAVLG-DDPQLMKVALQDLQTNSKIGALLPYFVYVVSG-VKSVSHDL 210
Query: 102 SLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLG--NRFSDNHWDLRNFVAD 159
L L++VARSL RNPH+ + PY+ ++ SV+ C++ N +D HW LR+ A
Sbjct: 211 EQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCVLEPLAASINPLND-HWTLRDGAAL 269
Query: 160 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 219
L++ I G + L + +L DP + L HYGA+ GL ALG V ++ P+
Sbjct: 270 LLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPH 329
Query: 220 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA 255
L Y L+ + N + + +VYGA+ A
Sbjct: 330 LSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVA 365
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 26/167 (15%)
Query: 116 RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV----ADL------IASIC 165
R I E YL + P + + +L ++ D+ +L +FV +DL IAS C
Sbjct: 335 RGTFIKAETYLQHLNPEYLRYYFASKLSDKVEDSDLNLDDFVQKVNSDLVGKVVNIASRC 394
Query: 166 TRF-GHVYQNLQSR--VTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN-LE 221
+F + N S L+ +F+D S++Q Y A + AA + ++ L +
Sbjct: 395 AKFINSSFNNTLSANCAEPELVQSFIDAGDSIAQAYEAREFSAA----IREIMALADKAN 450
Query: 222 LYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVL 268
Y+ +P L +++ E + H C+ G+ ++ +L L
Sbjct: 451 QYIDEKKPWALAKQEGQEQQVHNV--------CSVGINLFRQLAIYL 489
>sp|P39054|DYN2_MOUSE Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2
Length = 870
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 35/192 (18%)
Query: 153 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV 212
+RN V +A I ++++ + +T++H ++ TK+ H
Sbjct: 656 IRNLVDSYVAII-------NKSIRDLMPKTIMHLMINNTKAFIHH--------------- 693
Query: 213 HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVL--LR 270
LL LY + ++ E + +R + R+Y AL+ A + TV +
Sbjct: 694 ELLAY----LYSSADQSSLMEESAEQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVP 749
Query: 271 PPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSG 330
PP W N G P +R S + +PP + T GP P+ M V G +
Sbjct: 750 PPVDDTWLQNTSGHSPTPQRRPVSSVHPPGRPPAVRGPTPGP----PLIPMPV---GATS 802
Query: 331 GFSTPVEGPRAG 342
FS P R G
Sbjct: 803 SFSAPPIPSRPG 814
>sp|P39052|DYN2_RAT Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1
Length = 870
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 35/192 (18%)
Query: 153 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV 212
+RN V +A I ++++ + +T++H ++ TK+ H
Sbjct: 656 IRNLVDSYVAII-------NKSIRDLMPKTIMHLMINNTKAFIHH--------------- 693
Query: 213 HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVL--LR 270
LL LY + ++ E + +R + R+Y AL+ A + TV +
Sbjct: 694 ELLAY----LYSSADQSSLMEESAEQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVP 749
Query: 271 PPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSG 330
PP W N P +R S + +PP + T GP P+ M V G +
Sbjct: 750 PPVDDTWLQNTSSHSPTPQRRPVSSVHPPGRPPAVRGPTPGP----PLIPMPV---GATS 802
Query: 331 GFSTPVEGPRAG 342
FS P R G
Sbjct: 803 SFSAPPIPSRPG 814
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,743,321
Number of Sequences: 539616
Number of extensions: 5484946
Number of successful extensions: 13330
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13302
Number of HSP's gapped (non-prelim): 16
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)