Query 015383
Match_columns 408
No_of_seqs 137 out of 212
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2549 Transcription initiati 100.0 9.6E-73 2.1E-77 582.8 21.9 378 27-408 186-576 (576)
2 COG5095 TAF6 Transcription ini 100.0 1.7E-59 3.6E-64 459.3 14.8 239 26-267 175-414 (450)
3 cd08050 TAF6 TATA Binding Prot 100.0 1.1E-56 2.4E-61 448.7 18.4 183 29-212 159-343 (343)
4 PF07571 DUF1546: Protein of u 100.0 1.1E-31 2.5E-36 223.3 5.6 91 133-223 1-92 (92)
5 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0011 2.5E-08 56.1 6.8 78 104-194 7-84 (97)
6 PF12348 CLASP_N: CLASP N term 96.3 0.031 6.7E-07 52.1 9.9 181 62-261 20-213 (228)
7 KOG2023 Nuclear transport rece 94.0 1.1 2.3E-05 50.1 13.8 170 56-233 222-445 (885)
8 PF02985 HEAT: HEAT repeat; I 93.7 0.12 2.7E-06 34.5 4.1 30 129-167 1-30 (31)
9 KOG1242 Protein containing ada 93.1 3.9 8.6E-05 44.8 16.2 208 42-265 168-455 (569)
10 PF12460 MMS19_C: RNAPII trans 92.2 5.5 0.00012 41.3 15.6 192 68-267 24-234 (415)
11 PF13513 HEAT_EZ: HEAT-like re 91.6 0.086 1.9E-06 38.9 1.1 55 151-207 1-55 (55)
12 KOG2023 Nuclear transport rece 91.6 0.92 2E-05 50.6 9.2 194 68-278 377-570 (885)
13 KOG2171 Karyopherin (importin) 91.3 5 0.00011 46.9 15.1 256 47-314 3-308 (1075)
14 PF14911 MMS22L_C: S-phase gen 88.2 7.2 0.00016 40.9 12.3 136 86-229 204-351 (373)
15 KOG0212 Uncharacterized conser 87.5 4.7 0.0001 44.4 10.6 80 102-194 62-141 (675)
16 KOG1242 Protein containing ada 86.3 28 0.0006 38.5 15.8 147 49-209 134-283 (569)
17 KOG1824 TATA-binding protein-i 85.2 11 0.00023 44.0 12.3 142 79-231 514-667 (1233)
18 cd00020 ARM Armadillo/beta-cat 85.1 5.1 0.00011 32.2 7.5 68 129-207 8-76 (120)
19 KOG2171 Karyopherin (importin) 83.5 23 0.0005 41.7 14.3 183 67-267 330-514 (1075)
20 cd00020 ARM Armadillo/beta-cat 81.9 12 0.00025 30.1 8.4 70 81-165 49-119 (120)
21 PF01602 Adaptin_N: Adaptin N 81.2 21 0.00045 37.1 12.0 68 125-207 111-179 (526)
22 PRK09687 putative lyase; Provi 81.1 6.2 0.00013 39.2 7.8 57 148-210 102-158 (280)
23 PF10508 Proteasom_PSMB: Prote 80.2 40 0.00087 36.2 14.0 159 46-216 35-199 (503)
24 PF11864 DUF3384: Domain of un 79.8 41 0.00088 35.7 13.8 97 42-139 64-187 (464)
25 PF12460 MMS19_C: RNAPII trans 73.1 98 0.0021 32.2 14.2 197 45-264 186-404 (415)
26 PF03224 V-ATPase_H_N: V-ATPas 71.0 84 0.0018 31.3 12.7 114 99-218 69-189 (312)
27 PRK09687 putative lyase; Provi 70.7 1E+02 0.0022 30.6 13.2 53 148-210 170-222 (280)
28 KOG1824 TATA-binding protein-i 69.6 90 0.002 36.9 13.7 146 100-259 226-407 (1233)
29 PF13251 DUF4042: Domain of un 68.3 46 0.001 31.5 9.6 139 107-257 6-177 (182)
30 KOG1241 Karyopherin (importin) 67.1 64 0.0014 37.1 11.7 136 81-227 360-503 (859)
31 PF12348 CLASP_N: CLASP N term 66.2 49 0.0011 30.7 9.4 112 46-171 88-211 (228)
32 PF12231 Rif1_N: Rap1-interact 64.5 1.8E+02 0.0039 30.0 17.8 203 38-257 79-306 (372)
33 PF13646 HEAT_2: HEAT repeats; 64.2 26 0.00057 27.2 6.1 51 148-210 11-61 (88)
34 PF01602 Adaptin_N: Adaptin N 62.7 1.1E+02 0.0023 31.9 12.0 130 57-213 312-448 (526)
35 PF12074 DUF3554: Domain of un 61.9 45 0.00098 33.4 8.8 91 89-189 164-255 (339)
36 PF12717 Cnd1: non-SMC mitotic 56.5 1E+02 0.0022 28.2 9.4 99 150-264 1-103 (178)
37 PF06371 Drf_GBD: Diaphanous G 55.3 11 0.00023 34.0 2.8 77 78-165 108-186 (187)
38 PTZ00429 beta-adaptin; Provisi 54.4 2.9E+02 0.0062 31.8 14.3 76 120-208 132-207 (746)
39 PF13513 HEAT_EZ: HEAT-like re 54.3 13 0.00028 27.1 2.7 42 114-164 14-55 (55)
40 PF12755 Vac14_Fab1_bd: Vacuol 54.2 88 0.0019 26.4 8.0 81 160-246 9-89 (97)
41 PF08506 Cse1: Cse1; InterPro 51.4 57 0.0012 34.0 7.7 148 104-255 159-338 (370)
42 PF10274 ParcG: Parkin co-regu 50.2 75 0.0016 30.3 7.7 92 76-170 71-168 (183)
43 PF05004 IFRD: Interferon-rela 50.1 1.6E+02 0.0035 29.7 10.5 98 121-228 79-184 (309)
44 PF08623 TIP120: TATA-binding 49.3 96 0.0021 29.2 8.1 126 122-255 3-138 (169)
45 COG5593 Nucleic-acid-binding p 46.9 36 0.00077 37.8 5.5 108 84-207 174-294 (821)
46 PF12719 Cnd3: Nuclear condens 45.1 67 0.0015 31.8 6.8 58 148-207 75-141 (298)
47 KOG1248 Uncharacterized conser 44.5 3.9E+02 0.0084 32.4 13.5 152 153-312 799-961 (1176)
48 PF03378 CAS_CSE1: CAS/CSE pro 44.4 2.2E+02 0.0047 30.4 10.9 141 121-283 19-176 (435)
49 KOG1823 DRIM (Down-regulated i 44.0 71 0.0015 38.8 7.7 84 150-235 577-663 (1364)
50 KOG0567 HEAT repeat-containing 42.9 44 0.00094 34.0 5.1 74 179-253 4-97 (289)
51 KOG0212 Uncharacterized conser 42.5 3.1E+02 0.0067 30.9 11.7 173 47-233 120-302 (675)
52 KOG2032 Uncharacterized conser 41.7 1.5E+02 0.0032 32.6 9.1 108 152-263 273-380 (533)
53 PF08064 UME: UME (NUC010) dom 40.2 1.1E+02 0.0024 26.0 6.6 73 180-258 13-87 (107)
54 KOG1851 Uncharacterized conser 40.0 1.2E+02 0.0026 37.6 8.7 114 80-207 1521-1636(1710)
55 PF04286 DUF445: Protein of un 37.5 48 0.001 32.7 4.5 25 34-58 199-223 (367)
56 PF10363 DUF2435: Protein of u 36.5 1.4E+02 0.0029 25.2 6.4 67 150-220 16-82 (92)
57 KOG1967 DNA repair/transcripti 36.2 1.8E+02 0.004 34.3 9.1 115 121-251 902-1021(1030)
58 KOG1991 Nuclear transport rece 36.2 6.1E+02 0.013 30.3 13.3 136 82-227 407-552 (1010)
59 KOG1967 DNA repair/transcripti 36.1 2E+02 0.0043 34.0 9.4 139 47-193 862-1010(1030)
60 PF14500 MMS19_N: Dos2-interac 34.0 3.6E+02 0.0078 26.7 9.9 116 61-188 11-133 (262)
61 KOG1248 Uncharacterized conser 33.7 1.2E+02 0.0026 36.4 7.4 115 43-170 780-902 (1176)
62 COG5181 HSH155 U2 snRNP splice 33.5 3E+02 0.0065 31.6 9.9 128 120-257 596-762 (975)
63 PF03542 Tuberin: Tuberin; In 32.7 6E+02 0.013 26.6 12.4 125 99-231 154-285 (356)
64 KOG0166 Karyopherin (importin) 32.6 1.9E+02 0.0041 31.9 8.2 133 81-229 109-251 (514)
65 PF12170 DNA_pol3_tau_5: DNA p 32.6 77 0.0017 28.8 4.6 61 26-86 50-133 (142)
66 KOG1240 Protein kinase contain 32.0 1.4E+02 0.0031 36.1 7.6 153 61-222 474-663 (1431)
67 KOG0915 Uncharacterized conser 31.8 1.4E+02 0.0029 37.1 7.5 78 75-167 992-1069(1702)
68 PF08167 RIX1: rRNA processing 30.8 4.1E+02 0.0089 24.1 9.8 103 151-259 39-148 (165)
69 PF04499 SAPS: SIT4 phosphatas 30.7 6.1E+02 0.013 27.5 11.7 173 94-291 26-217 (475)
70 PF12231 Rif1_N: Rap1-interact 30.4 6.2E+02 0.013 26.1 12.4 144 78-232 32-185 (372)
71 cd03571 ENTH_epsin ENTH domain 27.5 2.3E+02 0.005 25.1 6.7 94 157-252 18-116 (123)
72 PF12717 Cnd1: non-SMC mitotic 27.2 4.8E+02 0.01 23.7 10.7 51 106-168 44-94 (178)
73 smart00544 MA3 Domain in DAP-5 26.0 3.6E+02 0.0078 22.3 7.3 37 124-169 32-68 (113)
74 COG5064 SRP1 Karyopherin (impo 26.0 2.1E+02 0.0045 30.6 6.8 176 42-232 63-260 (526)
75 KOG0213 Splicing factor 3b, su 25.9 3.2E+02 0.0069 32.0 8.7 101 147-258 486-586 (1172)
76 PF03378 CAS_CSE1: CAS/CSE pro 25.8 8.1E+02 0.017 26.2 11.5 149 84-236 86-256 (435)
77 KOG3547 Bestrophin (Best vitel 25.8 87 0.0019 33.8 4.3 68 39-119 51-118 (450)
78 PRK13800 putative oxidoreducta 25.8 3.5E+02 0.0076 31.3 9.4 17 148-164 849-865 (897)
79 KOG2274 Predicted importin 9 [ 25.0 1.2E+03 0.026 27.9 13.0 142 108-267 638-786 (1005)
80 smart00802 UME Domain in UVSB 24.8 3E+02 0.0066 23.8 6.7 74 179-258 12-87 (107)
81 KOG0213 Splicing factor 3b, su 24.1 5.4E+02 0.012 30.3 10.0 102 148-259 727-833 (1172)
82 KOG0567 HEAT repeat-containing 24.0 1.1E+02 0.0023 31.3 4.3 72 180-252 156-247 (289)
83 PF03810 IBN_N: Importin-beta 22.8 2.7E+02 0.0058 21.2 5.5 38 150-187 29-75 (77)
84 PF10521 DUF2454: Protein of u 22.8 2.5E+02 0.0053 27.8 6.6 89 109-206 99-203 (282)
85 cd05136 RasGAP_DAB2IP The DAB2 22.8 8.3E+02 0.018 24.9 11.1 112 71-189 39-164 (309)
86 KOG0211 Protein phosphatase 2A 22.6 3.6E+02 0.0079 31.1 8.6 74 148-223 529-604 (759)
87 PF04793 Herpes_BBRF1: BRRF1-l 22.5 4.7E+02 0.01 26.7 8.5 127 38-177 26-163 (284)
88 PF01603 B56: Protein phosphat 22.5 9.1E+02 0.02 25.3 12.6 83 100-191 103-187 (409)
89 PF14500 MMS19_N: Dos2-interac 22.3 4.9E+02 0.011 25.8 8.6 64 142-207 4-67 (262)
90 PRK02542 photosystem I assembl 22.3 38 0.00081 32.5 0.7 30 378-407 35-64 (188)
91 PF01417 ENTH: ENTH domain; I 22.0 5.1E+02 0.011 22.2 9.5 95 157-253 20-120 (125)
92 smart00147 RasGEF Guanine nucl 20.8 4E+02 0.0087 25.2 7.4 71 41-115 118-198 (242)
93 CHL00036 ycf4 photosystem I as 20.6 43 0.00093 32.0 0.8 30 378-407 31-60 (184)
94 PF10508 Proteasom_PSMB: Prote 20.5 1.1E+03 0.023 25.4 11.3 60 124-193 196-258 (503)
95 COG0588 GpmA Phosphoglycerate 20.5 64 0.0014 31.9 1.9 50 156-205 38-97 (230)
96 KOG1992 Nuclear export recepto 20.4 3.3E+02 0.0072 31.9 7.6 105 172-283 587-697 (960)
97 PF04388 Hamartin: Hamartin pr 20.2 2.2E+02 0.0047 32.2 6.2 89 123-224 65-154 (668)
98 smart00567 EZ_HEAT E-Z type HE 20.0 1.7E+02 0.0036 18.8 3.3 29 151-189 1-29 (30)
No 1
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.6e-73 Score=582.85 Aligned_cols=378 Identities=35% Similarity=0.493 Sum_probs=318.1
Q ss_pred CCCceeeecCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhc--cCCHHHH
Q 015383 27 EDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRS--LKNFSLL 104 (408)
Q Consensus 27 ~d~~~v~vKp~vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~n--l~nl~~L 104 (408)
..|.++++||.++|+||+|||+||++||++|++ +|++.|++||++|+||+|||||||||++||+|+|+.| ++|+..|
T Consensus 186 k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL 264 (576)
T KOG2549|consen 186 KIGEPVELKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELL 264 (576)
T ss_pred ccCCcccccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHH
Confidence 566899999999999999999999999999998 5677899999999999999999999999999999999 7999999
Q ss_pred HHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383 105 FALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 183 (408)
Q Consensus 105 ~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~-~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL 183 (408)
+++|+|++||++||+||+|||||+||||||||+|+|++|.++ .||||+||||||++++.||++|++.|.+|++||++||
T Consensus 265 ~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl 344 (576)
T KOG2549|consen 265 IYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTL 344 (576)
T ss_pred HHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985 7899999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhh
Q 015383 184 LHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDR 263 (408)
Q Consensus 184 ~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~ 263 (408)
.|+|+|+++++++|||||+||++||.++||.+|+|+|..|+..|++++..+..+|.+.+.||++||++|+.++..|+.++
T Consensus 345 ~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii~~~ 424 (576)
T KOG2549|consen 345 SKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPIIRDK 424 (576)
T ss_pred HHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh--ccCCCccccccccC-cccccCCCccccccccccCCCCccccccCCCC-Cccc--cCcccccCCCCCCCCCcccC
Q 015383 264 LKTV--LLRPPKQSRWESNR-KGMIVFPSKRKASMDNLMLQPPVKKMATLGPM-GVMP--VNSMAVNMQGPSGGFSTPVE 337 (408)
Q Consensus 264 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 337 (408)
+... ...|-.+..++..| +++.....+|+++-++..-.-|...++ ++|+ ..++ ...+.+.+.-+..|.|..+.
T Consensus 425 l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~~~~~~~~~~~~~v~~~~~~~g~p~~~t 503 (576)
T KOG2549|consen 425 LNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPVMSSAQSLTSTQQVSSPTEAPGSPSTST 503 (576)
T ss_pred hccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCccccccccccccceecCCCCCCCCCccCC
Confidence 9988 44666778888888 899999999988755555555555555 3331 0000 01111222211112222222
Q ss_pred CCCCcc--ch--hhhhhhhhhhhccccchhhhHHHHHHHHhhhccCccchhHHHHHHhccccccccCCccccccC
Q 015383 338 GPRAGV--SM--LRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL 408 (408)
Q Consensus 338 ~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~s~~l~q~Wkdd~~~g~ll~sl~elfGe~il~Fip~~E~s~fl 408 (408)
.|.+.. +- -++.+ ..+.+.|-.++...-+..++.|+++.+++..|....+..+.+..+|.++.+++.|.
T Consensus 504 ~p~~~~~~~~~~~~~~~--~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~q~~~~~ 576 (576)
T KOG2549|consen 504 GPVTSEVPSVVTESTSG--PKVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSGSPACGSKQESVDS 576 (576)
T ss_pred CCcccCCCCcccccccC--CccccCCCceeeecccccccccCCCCCCCCccccccCCCCCCccccccccccccCC
Confidence 221111 00 01111 13334446677778888999999999999999999999999999999999999763
No 2
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-59 Score=459.35 Aligned_cols=239 Identities=41% Similarity=0.646 Sum_probs=222.3
Q ss_pred cCCCceeeecCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHH
Q 015383 26 REDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLF 105 (408)
Q Consensus 26 ~~d~~~v~vKp~vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~ 105 (408)
...+.++++||+|||+||||+|+||++|+.+++++++.+.|++||+||++|+|||||+|||++||+|+|++|++|+..|.
T Consensus 175 v~~~~n~E~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit~Nl~nl~~Lt 254 (450)
T COG5095 175 VTSMENAELKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQITKNLKNLEKLT 254 (450)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34556999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCC-cchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 015383 106 ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD-NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLL 184 (408)
Q Consensus 106 ~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~-~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~ 184 (408)
.+|.|+.||++|++||+|||+||||||+|||+++|++|+.|.+ +|++|||+||.+|..+|++|+++|.+|+|||+||++
T Consensus 255 Tv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 255 TVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 9999999999999999999999999999999999999998754 799999999999999999999999999999999999
Q ss_pred HHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhhh
Q 015383 185 HAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRL 264 (408)
Q Consensus 185 k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~ 264 (408)
|+|+|.+++.+|||||+.||+.||.++||.+|-||+..|...+..-++. .|+..-.|+.+|.++|..|+=..-.|.+
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~---~~e~~~~e~n~~vd~l~dalliL~~d~L 411 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEK---GNEEEIYENNRVVDLLKDALLILQSDGL 411 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhc---cchhhcccchHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999888876643 4666778999999999998766666655
Q ss_pred hhh
Q 015383 265 KTV 267 (408)
Q Consensus 265 ~~~ 267 (408)
.-.
T Consensus 412 pnq 414 (450)
T COG5095 412 PNQ 414 (450)
T ss_pred CCc
Confidence 443
No 3
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=100.00 E-value=1.1e-56 Score=448.70 Aligned_cols=183 Identities=56% Similarity=0.931 Sum_probs=177.0
Q ss_pred CceeeecCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccC-CHHHHHHH
Q 015383 29 GISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLK-NFSLLFAL 107 (408)
Q Consensus 29 ~~~v~vKp~vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~-nl~~L~~L 107 (408)
..++.+||.++|+||+|||+||++||++|++ +++..|++||++|++|||||||||||++||+++|++|++ |+..|.++
T Consensus 159 ~~~~~~k~~~~~~LS~Elq~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~l 237 (343)
T cd08050 159 DEQVLLKPLVRHVLSKELQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYL 237 (343)
T ss_pred cCcceeeeccccccCHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHH
Confidence 4588999999999999999999999999997 456679999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 015383 108 MRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHA 186 (408)
Q Consensus 108 Lrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~-~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~ 186 (408)
|+|++||++||+|+||||+|+|||++|||+|++++|+++ .++||+|||+||++|+.||++|+++|++|++||+++|.|+
T Consensus 238 m~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~ 317 (343)
T cd08050 238 MRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKA 317 (343)
T ss_pred HHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhhHHHHHHhhCHHHH
Q 015383 187 FLDPTKSLSQHYGAIQGLAALGPSVV 212 (408)
Q Consensus 187 llDp~k~l~t~YGAI~GL~aLG~~aV 212 (408)
|+||++++++|||||+||++||+++|
T Consensus 318 l~d~~~~~~~~YGAi~GL~~lG~~~v 343 (343)
T cd08050 318 LLDPKKPLTTHYGAIVGLSALGPEAV 343 (343)
T ss_pred HcCCCCCcchhhHHHHHHHHhCccCC
Confidence 99999999999999999999999875
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=99.97 E-value=1.1e-31 Score=223.33 Aligned_cols=91 Identities=62% Similarity=1.077 Sum_probs=88.2
Q ss_pred HHHHHhccccCCCCC-CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHH
Q 015383 133 VITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 211 (408)
Q Consensus 133 vLTCll~k~L~~~~~-~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a 211 (408)
||||+|+|++|+++. +|||+|||+||++|+.||++|+++|++|++||+++|+++|+||++|+++|||||+||.+||+++
T Consensus 1 vltClv~k~l~~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 1 VLTCLVGKQLGSRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CeEEEeeccccCCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999875 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHH
Q 015383 212 VHLLILPNLELY 223 (408)
Q Consensus 212 Vr~lllP~L~~y 223 (408)
||.+|+||++.|
T Consensus 81 vr~~ilP~l~~~ 92 (92)
T PF07571_consen 81 VRALILPNLKAY 92 (92)
T ss_pred HHHhhccCcCCC
Confidence 999999999876
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.19 E-value=0.0011 Score=56.06 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383 104 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 183 (408)
Q Consensus 104 L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL 183 (408)
|..+-.++.||-.+ ++.|+-.|+|+||.|+ .|++|++|.+|..-|..|++.++...-.--+.|...|
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~---------~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCF---------DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665 9999999999999998 5889999999999999999988764444467788888
Q ss_pred HHHhcCCCCCc
Q 015383 184 LHAFLDPTKSL 194 (408)
Q Consensus 184 ~k~llDp~k~l 194 (408)
.|.+.|++.+.
T Consensus 74 ~kl~~D~d~~V 84 (97)
T PF12755_consen 74 CKLSADPDENV 84 (97)
T ss_pred HHHHcCCchhH
Confidence 99999888663
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.30 E-value=0.031 Score=52.05 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=104.5
Q ss_pred chHHHHHHHHhhhhcCCc---cccchhhHHHhH---HHHhhccCCH--HHHHHHHHHHHHHhcCCCcccccchhhhHHHH
Q 015383 62 NSTVFKQALLSLAMDSGL---HPLVPYFTYFIS---EEVTRSLKNF--SLLFALMRVARSLLRNPHIHIEPYLHQMMPSV 133 (408)
Q Consensus 62 d~~~r~~AL~sL~tD~GL---~qLLPYfv~FIs---e~V~~nl~nl--~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsv 133 (408)
|=+.|.+||..|+.---- ....+-|+..+. ..+...+.|+ ......+.++..|..+-.-.+++|+..++|++
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 334567788766654222 234444444444 5666666553 23344566666666666667999999999999
Q ss_pred HHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHH-HHHHHHHhcCCCCCcchhhhHHHHHHhh-CHHH
Q 015383 134 ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-TRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV 211 (408)
Q Consensus 134 LTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI-~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~~a 211 (408)
+.++-... =-+|+.|...|..||..++ ..+++ ...+...+ .+++.....+++..|..+ ..--
T Consensus 100 l~~~~~~~---------~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~--~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 100 LKKLGDSK---------KFIREAANNALDAIIESCS-----YSPKILLEILSQGL--KSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHGGG------------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHT--T-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHcccc---------HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcc
Confidence 98875431 2689999999999998766 23466 44444444 466677777776665543 1111
Q ss_pred H-HHhhcc--chHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhh
Q 015383 212 V-HLLILP--NLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 261 (408)
Q Consensus 212 V-r~lllP--~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~ 261 (408)
. ...+-. .++.+.+.|...+.+ .+..+|..|.+++..+....|..-.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred chHhhhcccchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 0 011111 235566666666654 5678999999999999888776643
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=1.1 Score=50.13 Aligned_cols=170 Identities=18% Similarity=0.268 Sum_probs=100.6
Q ss_pred HhcCCCchHHHHH---HHH-hhhhcC-CccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCc--ccccchhh
Q 015383 56 LTVSRSNSTVFKQ---ALL-SLAMDS-GLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--HIEPYLHQ 128 (408)
Q Consensus 56 all~~~d~~~r~~---AL~-sL~tD~-GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L--~IepYLHq 128 (408)
++-+++++++|+. ||. -|+.-| .|-+=++-.+.|+-...+.. |=.+-.---.+-.|+..+|-. -+.|||.+
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 3444556677764 332 222222 13333333344444433332 222333345667789999944 57999999
Q ss_pred hHHHHHHHHhcccc-----CCC--------------------------C------CC----------cchhHHHHHHHHH
Q 015383 129 MMPSVITCLVSKRL-----GNR--------------------------F------SD----------NHWDLRNFVADLI 161 (408)
Q Consensus 129 LlPsvLTCll~k~L-----~~~--------------------------~------~~----------~hw~LRd~AA~LL 161 (408)
|+|.++.-++-... .+. . .+ ..|.||..+|..|
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 99999987765321 100 0 01 2499999999999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhh
Q 015383 162 ASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLL 233 (408)
Q Consensus 162 ~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~ 233 (408)
.-+.+-|++ .+-+.++-.|...|.. .....+-.+|.+|.|+- |-.-...+|+|+.+...|-+-|.+
T Consensus 380 DVLanvf~~---elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIA-EGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 380 DVLANVFGD---ELLPILLPLLKEHLSS--EEWKVREAGVLALGAIA-EGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred HHHHHhhHH---HHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHH-HHHhhhcccchHHHHHHHHHHhcc
Confidence 999999985 4666666666666653 33444444555555442 334455788888777776666553
No 8
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.75 E-value=0.12 Score=34.50 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=24.8
Q ss_pred hHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 015383 129 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 167 (408)
Q Consensus 129 LlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~k 167 (408)
|+|.++.++ .|.+|.+|+.|+..|+.|++.
T Consensus 1 llp~l~~~l---------~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL---------NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH---------T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc---------CCCCHHHHHHHHHHHHHHHhh
Confidence 578777776 478999999999999999875
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.05 E-value=3.9 Score=44.84 Aligned_cols=208 Identities=18% Similarity=0.166 Sum_probs=130.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCchHHHHH---HHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHH-HHHHHHHHHhcC
Q 015383 42 LSKELQLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLF-ALMRVARSLLRN 117 (408)
Q Consensus 42 LSkElQlYf~kIteall~~~d~~~r~~---AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~-~LLrmv~ALL~N 117 (408)
.+.+...|+..+.+++.+......|.. |.+.+...-| ..-=||++.++-.-++.--+.....+ .....++|++..
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh
Confidence 355677799999999876543333332 4467777777 66678888777654443322222222 244455555543
Q ss_pred CC--------------------------------------cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 118 PH--------------------------------------IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 118 p~--------------------------------------L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
=+ ..++-++..++|.+...+ .|-|=.+|+-+-.
T Consensus 247 ~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl---------~DT~~evr~a~~~ 317 (569)
T KOG1242|consen 247 LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL---------WDTKPEVRKAGIE 317 (569)
T ss_pred cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH---------ccCCHHHHHHHHH
Confidence 32 222333333333111111 3567789999999
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCC-Cc------------------------------------chhhhHHH
Q 015383 160 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK-SL------------------------------------SQHYGAIQ 202 (408)
Q Consensus 160 LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k-~l------------------------------------~t~YGAI~ 202 (408)
.|..+|..-.+ + .-.++..+|+.++.||++ .. .++=+++.
T Consensus 318 ~l~~~~svidN--~-dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~ 394 (569)
T KOG1242|consen 318 TLLKFGSVIDN--P-DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAI 394 (569)
T ss_pred HHHHHHHhhcc--H-HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHH
Confidence 99999988664 3 366788999999999993 21 13333443
Q ss_pred HHHhhCHHH-HHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhhhh
Q 015383 203 GLAALGPSV-VHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLK 265 (408)
Q Consensus 203 GL~aLG~~a-Vr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~ 265 (408)
-.-.+-..+ =+..+-|+++.+...|+..+.+. ...+|..|.|.+|+++..+|..-.+.+.
T Consensus 395 IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f~d~~ 455 (569)
T KOG1242|consen 395 IIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSFDDLI 455 (569)
T ss_pred HHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 333333333 24557888888888888887652 4668999999999999999987654443
No 10
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.21 E-value=5.5 Score=41.32 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=110.5
Q ss_pred HHHHhhhhcCC-ccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhc----CC-Ccccccchhh-hHHHHHHHHhcc
Q 015383 68 QALLSLAMDSG-LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR----NP-HIHIEPYLHQ-MMPSVITCLVSK 140 (408)
Q Consensus 68 ~AL~sL~tD~G-L~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~----Np-~L~IepYLHq-LlPsvLTCll~k 140 (408)
++|..+.+++. +..++|+++.-+.......- +.+....+++.+..++. +. +...+-|.|. ++|.++..++..
T Consensus 24 ~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~ 102 (415)
T PF12460_consen 24 EALAALSTSPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQA 102 (415)
T ss_pred HHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhh
Confidence 46666777666 44555555544444333221 44444444444444443 34 6677899997 888888888776
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc----------CCCCCcchhhhHHHHHHhhCHH
Q 015383 141 RLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----------DPTKSLSQHYGAIQGLAALGPS 210 (408)
Q Consensus 141 ~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~ll----------Dp~k~l~t~YGAI~GL~aLG~~ 210 (408)
..+... .++.+=+.+++++..|++..+ ..-+..+.+.+.+.|+ +...........+.-+.++=.-
T Consensus 103 ~~~~~~--~~~~~L~~~~~l~~~iv~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 177 (415)
T PF12460_consen 103 SDQSSD--LDDRVLELLSRLINLIVRSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCS 177 (415)
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHc
Confidence 543321 567888999999999999877 5677888888888887 1111001111112111111111
Q ss_pred HHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHh--hhhhhhhhhhhh
Q 015383 211 VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA--AGLCVYDRLKTV 267 (408)
Q Consensus 211 aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A--~g~~~~~~~~~~ 267 (408)
.=+.+.+|....+.+.+-..... ..+...|.-+.++..+|++= -+..+.+.+...
T Consensus 178 l~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~ 234 (415)
T PF12460_consen 178 LRKDVSLPDLEELLQSLLNLALS--SEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSL 234 (415)
T ss_pred CCcccCccCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Confidence 22455677777777666555543 22356677788888888776 233344444433
No 11
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.58 E-value=0.086 Score=38.87 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 151 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 151 w~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
|.+|.-|+..|+.++...........+.++..|...|.|++. ...-.|..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 899999999999988776666667888999999999988666 6688888887653
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=0.92 Score=50.60 Aligned_cols=194 Identities=22% Similarity=0.267 Sum_probs=136.8
Q ss_pred HHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCC
Q 015383 68 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFS 147 (408)
Q Consensus 68 ~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~ 147 (408)
+||.-|++-=| +.++|-+.-++-+...+ .++..-..-+-..-|+..-=.=.+-|||..|+|-++.|+=.|.---+ .
T Consensus 377 AaLDVLanvf~-~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR-s 452 (885)
T KOG2023|consen 377 AALDVLANVFG-DELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR-S 452 (885)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee-e
Confidence 46666555433 67888888888887776 45655555555555665544447789999999999999977642111 2
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHh
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 227 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 227 (408)
-..|.|-.||--++..= .+.-++ .++.-|++.++|.+|- .+-.|..+++.|-.+|-.. ++|++..++..|
T Consensus 453 ITCWTLsRys~wv~~~~------~~~~f~-pvL~~ll~~llD~NK~--VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l 522 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDS------RDEYFK-PVLEGLLRRLLDSNKK--VQEAACSAFATLEEEAGEE-LVPYLEYILDQL 522 (885)
T ss_pred eeeeeHhhhhhhHhcCC------hHhhhH-HHHHHHHHHHhcccHH--HHHHHHHHHHHHHHhccch-hHHHHHHHHHHH
Confidence 46799988887655432 122233 3555566777776664 4567888888888888877 689999999999
Q ss_pred hHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhhhhhhccCCCcccccc
Q 015383 228 EPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWE 278 (408)
Q Consensus 228 e~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~~~~~~~~~~~~ 278 (408)
......+..+|-..-+|| .|+|-..+|--+++..-..+..||.-..|.
T Consensus 523 ~~af~kYQ~KNLlILYDA---IgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 523 VFAFGKYQKKNLLILYDA---IGTLADSVGHALNKPAYIQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHhhcceehHHHH---HHHHHHHHHHhcCcHHHHHHhccHHHHHHH
Confidence 998887766666666666 567777888888887777788888888886
No 13
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=5 Score=46.92 Aligned_cols=256 Identities=14% Similarity=0.108 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHH--HHHHHHHHHHHhcCCCccccc
Q 015383 47 QLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSL--LFALMRVARSLLRNPHIHIEP 124 (408)
Q Consensus 47 QlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~--L~~LLrmv~ALL~Np~L~Iep 124 (408)
+..|..+...+.+.+ .+.|++|=+.|++..+=++++|-|.+..+..=....+.+.. +++++--.+ +.|. .-
T Consensus 3 ~~~l~qLl~~l~spD-n~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w-----~~l~-~e 75 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPD-NEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHW-----SRLS-AE 75 (1075)
T ss_pred hhHHHHHHHHhcCCC-chHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh-----hcCC-HH
Confidence 345666666677654 45688899999999988889998887665432221122111 122211111 1111 12
Q ss_pred chhhhHHHHHHHHhccc-------cCC-------CC----------------CCcchhHHHHHHHHHHHHHHHhCCCCcc
Q 015383 125 YLHQMMPSVITCLVSKR-------LGN-------RF----------------SDNHWDLRNFVADLIASICTRFGHVYQN 174 (408)
Q Consensus 125 YLHqLlPsvLTCll~k~-------L~~-------~~----------------~~~hw~LRd~AA~LL~~I~~kf~~sy~~ 174 (408)
--.+|-.++|.|++... +|. .. ...+-.+|+-|=.+|..+-..|++....
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 23466677777776521 111 00 1234469999999999999999988877
Q ss_pred hHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH-----HHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHH
Q 015383 175 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-----SVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVY 249 (408)
Q Consensus 175 L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-----~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~ 249 (408)
.-.-+.+.|.+.+.||..+ .+.-|+.++.++-. .+.+...-+-+|..+..++...... +...-.++..+.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEAL 230 (1075)
T ss_pred hHHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHH
Confidence 7778999999999999998 66667777766633 3444445556666666666665432 222345778888
Q ss_pred HHHHHhhhhhhhhhhhhhcc-------CCCccccccccC-----cccccCCCccccccccccC-CCCccccccCCCCC
Q 015383 250 GALQCAAGLCVYDRLKTVLL-------RPPKQSRWESNR-----KGMIVFPSKRKASMDNLML-QPPVKKMATLGPMG 314 (408)
Q Consensus 250 gaLl~A~g~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (408)
.-|+...++++.+.+...+. +--..-.||... ..+..-|.++|.+.+-.-+ .|.+=+|.||...+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc
Confidence 88899999999888876632 222333333221 1223356666665552222 45666778887665
No 14
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=88.24 E-value=7.2 Score=40.85 Aligned_cols=136 Identities=17% Similarity=0.253 Sum_probs=91.0
Q ss_pred hHHHhHHHHhhccC------CHHHHHHHHHHHHHHhcC----CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHH
Q 015383 86 FTYFISEEVTRSLK------NFSLLFALMRVARSLLRN----PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 155 (408)
Q Consensus 86 fv~FIse~V~~nl~------nl~~L~~LLrmv~ALL~N----p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd 155 (408)
|.+||-+.+..|.= --..+...+.++.-|++. +.=.+.--+..++|++|-|++-- +|+-..|.
T Consensus 204 l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v-------~e~~~~k~ 276 (373)
T PF14911_consen 204 LRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV-------NEEPQVKK 276 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc-------CCCcchhH
Confidence 45666666666541 134455566666666666 44455556677889999999753 34567899
Q ss_pred HHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHhcCCC-CCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhH
Q 015383 156 FVADLIASICTRFG-HVYQNLQSRVTRTLLHAFLDPT-KSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEP 229 (408)
Q Consensus 156 ~AA~LL~~I~~kf~-~sy~~L~pRI~~tL~k~llDp~-k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~ 229 (408)
.|-+++..|++.+. .+....+..+...+....-|-- ..-...|+-+..++.+-++.|.. ++|.+..-...-|.
T Consensus 277 ~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~-Lip~i~q~l~~~E~ 351 (373)
T PF14911_consen 277 LATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVIS-LIPTIRQSLKDSER 351 (373)
T ss_pred HHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999887 5566666666665544332211 12245678888899999999988 67877665554443
No 15
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=4.7 Score=44.41 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 015383 102 SLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTR 181 (408)
Q Consensus 102 ~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~ 181 (408)
..|+-+.-++-||-.+. .+|+.+++|+|++|.= |..-.+|.||..-|-.|++-+......--+.|..
T Consensus 62 GgLiGlAA~~iaLg~~~----~~Y~~~iv~Pv~~cf~---------D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFd 128 (675)
T KOG0212|consen 62 GGLIGLAAVAIALGIKD----AGYLEKIVPPVLNCFS---------DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFD 128 (675)
T ss_pred chHHHHHHHHHHhcccc----HHHHHHhhHHHHHhcc---------CccceeeeHhHHHHHHHHHHhccCcccchHHHHH
Confidence 45566666666664443 3499999999999982 4445889999999999999999988888999999
Q ss_pred HHHHHhcCCCCCc
Q 015383 182 TLLHAFLDPTKSL 194 (408)
Q Consensus 182 tL~k~llDp~k~l 194 (408)
.+.|...|++.+.
T Consensus 129 vL~klsaDsd~~V 141 (675)
T KOG0212|consen 129 VLCKLSADSDQNV 141 (675)
T ss_pred HHHHHhcCCcccc
Confidence 9999999887653
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=86.29 E-value=28 Score=38.51 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCCch-HHHH--HHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccc
Q 015383 49 YFDKIRELTVSRSNS-TVFK--QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY 125 (408)
Q Consensus 49 Yf~kIteall~~~d~-~~r~--~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepY 125 (408)
+|.+.+.-+++..+- +++. .++..+-++.|+..+-|+-+----.+-..+-++-..-...+....++..|=+-.-|||
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy 213 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY 213 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence 555555555543222 2233 3678999999999999874321111111111121111135566677777878889999
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 015383 126 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 205 (408)
Q Consensus 126 LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~ 205 (408)
+-.++|.+++|.=.+ .=.+|+-|......|.+.+.. ..++-.+...+...+.+ ...+.=+++-+|.
T Consensus 214 iv~~lp~il~~~~d~---------~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~---kWrtK~aslellg 279 (569)
T KOG1242|consen 214 IVPILPSILTNFGDK---------INKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEA---KWRTKMASLELLG 279 (569)
T ss_pred HHhhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHH---hhhhHHHHHHHHH
Confidence 999999999998332 227899999999999888754 44555555544444432 5777888888888
Q ss_pred hhCH
Q 015383 206 ALGP 209 (408)
Q Consensus 206 aLG~ 209 (408)
+++.
T Consensus 280 ~m~~ 283 (569)
T KOG1242|consen 280 AMAD 283 (569)
T ss_pred HHHH
Confidence 7754
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=85.16 E-value=11 Score=44.01 Aligned_cols=142 Identities=20% Similarity=0.312 Sum_probs=92.2
Q ss_pred ccccchhhHHHhHHHHhhccCC-----HHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhH
Q 015383 79 LHPLVPYFTYFISEEVTRSLKN-----FSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 153 (408)
Q Consensus 79 L~qLLPYfv~FIse~V~~nl~n-----l~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~L 153 (408)
+|+.+|-++.-+.-.|..+.-. +.....+.+++|-+-.|-.+.-.||+|.+.- |.+.+--. .+..-+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a---~d~DqeV 586 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKA---TDSDQEV 586 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhc---ccccHHH
Confidence 6666666666655555554422 4445567888888888888999999996655 44444321 2456699
Q ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH-------HHHHhhccchHHHHHH
Q 015383 154 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS-------VVHLLILPNLELYLKF 226 (408)
Q Consensus 154 Rd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~-------aVr~lllP~L~~y~~~ 226 (408)
|+.|-.++++++-.||+.-.+--||++-.|.+.+-+ -.|..-|+.+|.-+--- .+=.-++|.+-.|...
T Consensus 587 keraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 587 KERAISCMGQIIANFGDFLGNELPRTLPILLERLGN----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHH
Confidence 999999999999999977666677777777766643 45566666666644222 2223345555555544
Q ss_pred hhHhh
Q 015383 227 LEPEM 231 (408)
Q Consensus 227 Le~~l 231 (408)
....+
T Consensus 663 ~~r~l 667 (1233)
T KOG1824|consen 663 NQRAL 667 (1233)
T ss_pred HHHHH
Confidence 44443
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.05 E-value=5.1 Score=32.21 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=45.5
Q ss_pred hHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 129 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 129 LlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
++|.++.++ .+.+|.+|..|...|+.+|.........+ +..++..+.+.+.|+ .......|+..|..|
T Consensus 8 ~i~~l~~~l---------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLL---------SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHH---------HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 566666665 23359999999999999997633222332 336777888888764 345556677777766
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.51 E-value=23 Score=41.69 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=123.2
Q ss_pred HHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC
Q 015383 67 KQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF 146 (408)
Q Consensus 67 ~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~ 146 (408)
..+|..|+..=|=.+++|-+..++..-++. .++..=...|..+-++..=-+=.++.-+.+++|.|+..+
T Consensus 330 ~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--------- 398 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPPLFEALEAMLQS--TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--------- 398 (1075)
T ss_pred HHHHHHHHhcCChhhehHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc---------
Confidence 468899999988889999999988887766 477766667777777777666566666666666555433
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHH
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 225 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 225 (408)
.|.|=.+|.-|-+.++.+.-.|......= ..|+.-.|...+ |.......+=-|..+|.+|-.+.-...|-|+|+.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 57788999999999999876655211100 223333333333 3444444444566777777778888889999999998
Q ss_pred -HhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhhhhhh
Q 015383 226 -FLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 267 (408)
Q Consensus 226 -~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~ 267 (408)
.+.-.+.+ .++..=+.|..||=.++..+-....+++
T Consensus 478 ~~l~~L~~~------~~~~v~e~vvtaIasvA~AA~~~F~pY~ 514 (1075)
T KOG2171|consen 478 KKLLLLLQS------SKPYVQEQAVTAIASVADAAQEKFIPYF 514 (1075)
T ss_pred HHHHHHhcC------CchhHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 44433322 1333336678888888877777777777
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.90 E-value=12 Score=30.12 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=48.7
Q ss_pred ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 81 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYL-HqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
..+|.++.++.+ +|.......+.....|..++.-..+.+. +.++|.++.++- +++...|+.|..
T Consensus 49 ~~i~~l~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~---------~~~~~~~~~a~~ 113 (120)
T cd00020 49 GGLPALVQLLKS------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD---------SSNEDIQKNATG 113 (120)
T ss_pred CChHHHHHHHhC------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh---------cCCHHHHHHHHH
Confidence 556666666553 3556666778888888888764444443 357888887762 336789999999
Q ss_pred HHHHHH
Q 015383 160 LIASIC 165 (408)
Q Consensus 160 LL~~I~ 165 (408)
+|..||
T Consensus 114 ~l~~l~ 119 (120)
T cd00020 114 ALSNLA 119 (120)
T ss_pred HHHHhh
Confidence 999887
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=81.25 E-value=21 Score=37.12 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=50.8
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHH-HHHHHHHHhcCCCCCcchhhhHHHH
Q 015383 125 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSR-VTRTLLHAFLDPTKSLSQHYGAIQG 203 (408)
Q Consensus 125 YLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pR-I~~tL~k~llDp~k~l~t~YGAI~G 203 (408)
-+..++|.|..|+- ++++.+|..|+-.+.+|++.+.+ +-+. +...+.+.+.|++ .+..+.|+..
T Consensus 111 ~~~~l~~~v~~ll~---------~~~~~VRk~A~~~l~~i~~~~p~----~~~~~~~~~l~~lL~d~~--~~V~~~a~~~ 175 (526)
T PF01602_consen 111 MAEPLIPDVIKLLS---------DPSPYVRKKAALALLKIYRKDPD----LVEDELIPKLKQLLSDKD--PSVVSAALSL 175 (526)
T ss_dssp HHHHHHHHHHHHHH---------SSSHHHHHHHHHHHHHHHHHCHC----CHHGGHHHHHHHHTTHSS--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhc---------CCchHHHHHHHHHHHHHhccCHH----HHHHHHHHHHhhhccCCc--chhHHHHHHH
Confidence 34556666666662 45779999999999999999544 4334 6777777776555 7888889988
Q ss_pred HHhh
Q 015383 204 LAAL 207 (408)
Q Consensus 204 L~aL 207 (408)
+..+
T Consensus 176 l~~i 179 (526)
T PF01602_consen 176 LSEI 179 (526)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8888
No 22
>PRK09687 putative lyase; Provisional
Probab=81.14 E-value=6.2 Score=39.17 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=44.1
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 210 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 210 (408)
+..|.+|..|+..|+++|.... .-.+++...+...+.|+ +...+++|+.+|..+|.+
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDE 158 (280)
T ss_pred CCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCH
Confidence 5678999999999999875432 22567888888888877 557889999999988754
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.23 E-value=40 Score=36.17 Aligned_cols=159 Identities=13% Similarity=0.199 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCCchH---HHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCccc
Q 015383 46 LQLYFDKIRELTVSRSNST---VFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHI 122 (408)
Q Consensus 46 lQlYf~kIteall~~~d~~---~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~I 122 (408)
+..+.+.+.-.|+..++.+ .-.++|..+=.+-....+.|.+..|+..++.+. +-......++.+.-++.++.-..
T Consensus 35 l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 35 LERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 4445455544445433322 122456655566677777999999999999874 33333334555666666665544
Q ss_pred ccch-hhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCC-CCcchhhh
Q 015383 123 EPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPT-KSLSQHYG 199 (408)
Q Consensus 123 epYL-HqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp~-k~l~t~YG 199 (408)
+... +.++|.|+.|+-.. .-.+-..|+++|..|++. ......+ .+.+...|.+.+..++ ......|-
T Consensus 113 ~~~~~~~l~~~i~~~L~~~---------d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRDP---------DLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE 182 (503)
T ss_pred HHhcCccHHHHHHHHHcCC---------cHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence 4333 67899999999433 347899999999999863 3222222 2223555555554322 23567888
Q ss_pred HHHHHHhhCHHHHHHhh
Q 015383 200 AIQGLAALGPSVVHLLI 216 (408)
Q Consensus 200 AI~GL~aLG~~aVr~ll 216 (408)
.++-++...+++...+.
T Consensus 183 l~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 88888888888776654
No 24
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=79.79 E-value=41 Score=35.71 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCC-----ccccchhhHHHhHHHHh-----------------hcc-
Q 015383 42 LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSG-----LHPLVPYFTYFISEEVT-----------------RSL- 98 (408)
Q Consensus 42 LSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~G-----L~qLLPYfv~FIse~V~-----------------~nl- 98 (408)
+.-+=..||+.|++.-. .+|-+++-+||..|..+-. ...+.|.+++|+.+-.. .+.
T Consensus 64 ~~~~R~~fF~~I~~~~~-~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~ 142 (464)
T PF11864_consen 64 SGLMRAEFFRDISDPSN-DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLS 142 (464)
T ss_pred cHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 44566789999976532 2344677889999987753 66789999999987660 111
Q ss_pred ---CCHHHHHHHHHHHHHHhcCCCcccc-cchhhhHHHHHHHHhc
Q 015383 99 ---KNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVS 139 (408)
Q Consensus 99 ---~nl~~L~~LLrmv~ALL~Np~L~Ie-pYLHqLlPsvLTCll~ 139 (408)
.+...+..+++++.-+++.++-+++ ..++.++-.+++++-.
T Consensus 143 ~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~ 187 (464)
T PF11864_consen 143 NLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKS 187 (464)
T ss_pred cccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1445678899999999999998887 8888888887777533
No 25
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=73.10 E-value=98 Score=32.17 Aligned_cols=197 Identities=18% Similarity=0.210 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHH---hhhh----cCCccccchhhHHHhHHHHhhcc--CCHHHHHHHHHHHHHHh
Q 015383 45 ELQLYFDKIRELTVSRSNSTVFKQALL---SLAM----DSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLL 115 (408)
Q Consensus 45 ElQlYf~kIteall~~~d~~~r~~AL~---sL~t----D~GL~qLLPYfv~FIse~V~~nl--~nl~~L~~LLrmv~ALL 115 (408)
+.+.+.+++++.+...+++..|..+++ +|-+ +..+...+-.+...+ ..... .....+..+.=+++||+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHH
Confidence 556688898888776655544544443 3333 332222222222222 01111 23456677788899999
Q ss_pred cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhC-----CCCcch----HHHHHHHHHHH
Q 015383 116 RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG-----HVYQNL----QSRVTRTLLHA 186 (408)
Q Consensus 116 ~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~-----~sy~~L----~pRI~~tL~k~ 186 (408)
-..+ |..-+++.-++.++-. ..+...||+-++-|+..+. ..+.+. |+|+..+....
T Consensus 263 ~R~~----~~~~~~~~~L~~lL~~-----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 263 MRGH----PLATELLDKLLELLSS-----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HcCC----chHHHHHHHHHHHhCC-----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 8765 5555555555554422 3678888888888776521 111222 78888887777
Q ss_pred hcCCCCCc----chhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhh
Q 015383 187 FLDPTKSL----SQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 262 (408)
Q Consensus 187 llDp~k~l----~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~ 262 (408)
+.+.-++- ...| +.+|+.+=..+=..++.|+++.++..|-+.+.. .+...+.-+-.+...++.-....+.+
T Consensus 328 L~~~~~~~~~~~k~~y--L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNY--LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHhhcChhhHHHH--HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 66544432 2344 555555544555777999999999988888854 33445666666665555554444444
Q ss_pred hh
Q 015383 263 RL 264 (408)
Q Consensus 263 ~~ 264 (408)
-+
T Consensus 403 hl 404 (415)
T PF12460_consen 403 HL 404 (415)
T ss_pred HH
Confidence 33
No 26
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.98 E-value=84 Score=31.26 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccccchhhhHH----HHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcc
Q 015383 99 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMP----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN 174 (408)
Q Consensus 99 ~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlP----svLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~ 174 (408)
++...+.+++.++.-|+.... .....++.+-. ...+..+. .+ ..++|.+...|+.+|+.++...+..-..
T Consensus 69 ~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll----~~~D~~i~~~a~~iLt~Ll~~~~~~~~~ 142 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LL----DRNDSFIQLKAAFILTSLLSQGPKRSEK 142 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-----S-SSHHHHHHHHHHHHHHHTSTTT--HH
T ss_pred CcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-Hh----cCCCHHHHHHHHHHHHHHHHcCCccccc
Confidence 688899999888888887766 33333333221 11222221 11 2347899999999999999887665555
Q ss_pred hHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhh-CHHHHHHhhcc
Q 015383 175 LQSRVTRTLLHAFLDPTKS--LSQHYGAIQGLAAL-GPSVVHLLILP 218 (408)
Q Consensus 175 L~pRI~~tL~k~llDp~k~--l~t~YGAI~GL~aL-G~~aVr~lllP 218 (408)
....++..+.+.+.+-.++ ....+.|+.+|..| ..+..|..++=
T Consensus 143 ~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 143 LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence 4456666666666543332 23459999999988 66777776644
No 27
>PRK09687 putative lyase; Provisional
Probab=70.66 E-value=1e+02 Score=30.59 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=37.4
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 210 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 210 (408)
++.|.+|..|+.-|+.+ .++ .+.+...|.+.+.|++ ....-+|+.||..+|..
T Consensus 170 d~~~~VR~~A~~aLg~~--~~~------~~~~~~~L~~~L~D~~--~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 170 DPNGDVRNWAAFALNSN--KYD------NPDIREAFVAMLQDKN--EEIRIEAIIGLALRKDK 222 (280)
T ss_pred CCCHHHHHHHHHHHhcC--CCC------CHHHHHHHHHHhcCCC--hHHHHHHHHHHHccCCh
Confidence 56678999999888888 222 2356667777776553 45567888888888764
No 28
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=69.57 E-value=90 Score=36.92 Aligned_cols=146 Identities=16% Similarity=0.237 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHH
Q 015383 100 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV 179 (408)
Q Consensus 100 nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI 179 (408)
+...++..+++..++..--.-.+..|+-.++|.+..-+ +....+|=+||++.-+.+....+|+-....-.-|.|
T Consensus 226 q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~------~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 226 QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC------NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh------cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 46677888999999999888899999999999776443 333467779999999999999999987766678889
Q ss_pred HHHHHHHhc-CCCCCcch-------------------------------hhhHHHHHHhhCHHHHHHhhccch---HHHH
Q 015383 180 TRTLLHAFL-DPTKSLSQ-------------------------------HYGAIQGLAALGPSVVHLLILPNL---ELYL 224 (408)
Q Consensus 180 ~~tL~k~ll-Dp~k~l~t-------------------------------~YGAI~GL~aLG~~aVr~lllP~L---~~y~ 224 (408)
++.|++.+. ||+-...+ +=-|.. ++..+|.-+. +.+.
T Consensus 300 ~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaK--------cl~a~IsSR~E~L~~~~ 371 (1233)
T KOG1824|consen 300 INLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAK--------CLEAVISSRLEMLPDFY 371 (1233)
T ss_pred HHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHH--------HHHHHHhccHHHHHHHH
Confidence 999988775 88876554 122333 3334444433 3344
Q ss_pred HHhhHhhhhH-hhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 225 KFLEPEMLLE-KQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 225 ~~Le~~l~~~-~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
..+-|.+-.. |..+++++.|...+|-+|++-.+..
T Consensus 372 q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~ 407 (1233)
T KOG1824|consen 372 QTLGPALISRFKEREENVKADVFHAYIALLKQTRPV 407 (1233)
T ss_pred HHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence 4455554432 4567889999999999999875544
No 29
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=68.29 E-value=46 Score=31.47 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=83.1
Q ss_pred HHHHHHHHhcC-CCcccccchhhhHHHH-----------HHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHh------
Q 015383 107 LMRVARSLLRN-PHIHIEPYLHQMMPSV-----------ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF------ 168 (408)
Q Consensus 107 LLrmv~ALL~N-p~L~IepYLHqLlPsv-----------LTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf------ 168 (408)
-+....+|.++ +.=.+-.|.+.|+|.. +||++. |..-..|--|+++++.+.+.-
T Consensus 6 Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--------Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 6 ALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--------DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred HHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--------CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 46667888988 7778899999999865 555543 345589999999999988651
Q ss_pred -------CCCCcchHHHHHH-------HHHHHhcCCCCCcchhhhHHHHHHhhCHHH-HHHhhccchHHHHHHhhHhhhh
Q 015383 169 -------GHVYQNLQSRVTR-------TLLHAFLDPTKSLSQHYGAIQGLAALGPSV-VHLLILPNLELYLKFLEPEMLL 233 (408)
Q Consensus 169 -------~~sy~~L~pRI~~-------tL~k~llDp~k~l~t~YGAI~GL~aLG~~a-Vr~lllP~L~~y~~~Le~~l~~ 233 (408)
..+|..+-.++.. .|..++..++. ..+.=-.+.+|..|-..+ -..+=-..+...+..+.+.+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~-~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKS-PPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 1244555444332 33344443333 333334555555553221 1111123344455555555543
Q ss_pred HhhhhhhhHhHHHHHHHHHHHhhh
Q 015383 234 EKQKNEMKRHEAWRVYGALQCAAG 257 (408)
Q Consensus 234 ~~~~~~~~r~ea~~V~gaLl~A~g 257 (408)
.+..+|..+.-|+|+|+.+..
T Consensus 157 ---~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 ---RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred ---CCCcHHHHHHHHHHHHHcCCC
Confidence 456678899999999988743
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.12 E-value=64 Score=37.07 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=93.2
Q ss_pred ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 81 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L-~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
-++|...-||-+.++. .|+..-..-.-..-+.+.=|.- .+.|+++|.+|+++.-+..+.+ -.||-+|-
T Consensus 360 ~Iv~~Vl~Fiee~i~~--pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl---------~VkdTaAw 428 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQN--PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL---------WVKDTAAW 428 (859)
T ss_pred cchhhhHHHHHHhcCC--cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh---------hhcchHHH
Confidence 4788888898888876 4565554433344466666665 8999999999999988753322 45699999
Q ss_pred HHHHHHHHhC--CCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHh-----hccchHHHHHHh
Q 015383 160 LIASICTRFG--HVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLL-----ILPNLELYLKFL 227 (408)
Q Consensus 160 LL~~I~~kf~--~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~l-----llP~L~~y~~~L 227 (408)
.+++||+-.. -....+-+-++..|..-+.|.-+--..-=+|+.||..--.++.+.- .-|....+...|
T Consensus 429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 429 TLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSL 503 (859)
T ss_pred HHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHH
Confidence 9999998643 2223345556777888888877767777889999986555554432 335555555444
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=66.21 E-value=49 Score=30.69 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhc---CCCchHHHHHH---HHhhhhcCCccccchhh-HHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 015383 46 LQLYFDKIRELTV---SRSNSTVFKQA---LLSLAMDSGLHPLVPYF-TYFISEEVTRSLKNFSLLFALMRVARSLLRNP 118 (408)
Q Consensus 46 lQlYf~kIteall---~~~d~~~r~~A---L~sL~tD~GL~qLLPYf-v~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np 118 (408)
...|++.+...++ +......++.| |..+-...+ ..|.+ ..++.....+ +|...=...++.+..++.+-
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~--Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKS--KNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHc
Confidence 3344444444443 22233345544 444444433 22333 3344444433 34444344555555554444
Q ss_pred C---ccc--ccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC
Q 015383 119 H---IHI--EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV 171 (408)
Q Consensus 119 ~---L~I--epYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s 171 (408)
. -.+ ...+.++++.+..|+- |..=++|+.|-.++..+.+.|+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~---------D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLS---------DADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHT---------SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cchHhhhcccchHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHCCHh
Confidence 3 233 3346788888888873 334489999999999999888753
No 32
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=64.50 E-value=1.8e+02 Score=30.03 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=120.0
Q ss_pred CcccccHHHHH-HHHHHHHHhcCCC-chHHHHHHHHhhhhcC---C-ccccchhhHHHhHHHHhhccCCHHHHHHHHHHH
Q 015383 38 VKHVLSKELQL-YFDKIRELTVSRS-NSTVFKQALLSLAMDS---G-LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVA 111 (408)
Q Consensus 38 vkHvLSkElQl-Yf~kIteall~~~-d~~~r~~AL~sL~tD~---G-L~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv 111 (408)
+--.||.|... +++..++.+...+ ++.....+|..|+.-. . +..-.|--+..+-..+...++.......-+.+.
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 34456777777 7888888775433 3345666777776522 1 111112212222233443344445555566666
Q ss_pred HHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCc-----------------c
Q 015383 112 RSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-----------------N 174 (408)
Q Consensus 112 ~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~-----------------~ 174 (408)
+-|+.+---.+-...+.-+|.++++++...- .+|..|..++..+...++. .. +
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k---------~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~ 228 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAK---------DIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGK 228 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---------HHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhcccccccc
Confidence 6666665555666688899999999987421 5677666666655544432 11 2
Q ss_pred hHHHHHHHHHHHhcCCC--CCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHH
Q 015383 175 LQSRVTRTLLHAFLDPT--KSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGAL 252 (408)
Q Consensus 175 L~pRI~~tL~k~llDp~--k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaL 252 (408)
+-.-+.+.+.+.+.+++ +.-....+++++|. |...++ -.+++..++...|.-... ++...|.+|..+...|
T Consensus 229 ~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL--~~~~~~--~w~~~n~wL~v~e~cFn~---~d~~~k~~A~~aW~~l 301 (372)
T PF12231_consen 229 LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL--GSSRLD--SWEHLNEWLKVPEKCFNS---SDPQVKIQAFKAWRRL 301 (372)
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh--CCchhh--ccHhHhHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 22223344444555422 23456788888887 554433 478888888888887754 4567888888888888
Q ss_pred HHhhh
Q 015383 253 QCAAG 257 (408)
Q Consensus 253 l~A~g 257 (408)
.-++.
T Consensus 302 iy~~~ 306 (372)
T PF12231_consen 302 IYASN 306 (372)
T ss_pred HHHhc
Confidence 77433
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=64.16 E-value=26 Score=27.17 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=39.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 210 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 210 (408)
+..|.+|..|+.+|+.+ + .+++...|.+.+.| .......=|+.+|..+|.+
T Consensus 11 ~~~~~vr~~a~~~L~~~----~------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 11 DPDPQVRAEAARALGEL----G------DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp SSSHHHHHHHHHHHHCC----T------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHc----C------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 56789999999999933 2 34778888888854 5568889999999999863
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=62.73 E-value=1.1e+02 Score=31.89 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=72.5
Q ss_pred hcCCCchHHHHHHH---HhhhhcCCccccchhhHHHhHHH----HhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhh
Q 015383 57 TVSRSNSTVFKQAL---LSLAMDSGLHPLVPYFTYFISEE----VTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 129 (408)
Q Consensus 57 ll~~~d~~~r~~AL---~sL~tD~GL~qLLPYfv~FIse~----V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqL 129 (408)
+...+|...|..+| ..+.+...++.+++.|..|+.+. +.. ..+..+..++..- .-..+.|+..+
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~-----~~i~~I~~la~~~----~~~~~~~v~~l 382 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRR-----ELIKAIGDLAEKF----PPDAEWYVDTL 382 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHH-----HHHHHHHHHHHHH----GSSHHHHHHHH
T ss_pred ecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhh-----hHHHHHHHHHhcc----CchHHHHHHHH
Confidence 33244555555544 46666667777777777777321 211 1122222222222 11233344333
Q ss_pred HHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH
Q 015383 130 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 130 lPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 209 (408)
+. .+-. ....+++.+...+..++.+ ++.++.++++.+.+.+-+ .......-.+++.+...|.
T Consensus 383 ~~----ll~~---------~~~~~~~~~~~~i~~ll~~----~~~~~~~~l~~L~~~l~~-~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 383 LK----LLEI---------SGDYVSNEIINVIRDLLSN----NPELREKILKKLIELLED-ISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HH----HHHC---------TGGGCHCHHHHHHHHHHHH----STTTHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHCH
T ss_pred HH----hhhh---------ccccccchHHHHHHHHhhc----ChhhhHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccCC
Confidence 32 2211 1234577777777777776 577788899999998877 3334456788888888888
Q ss_pred HHHH
Q 015383 210 SVVH 213 (408)
Q Consensus 210 ~aVr 213 (408)
....
T Consensus 445 ~~~~ 448 (526)
T PF01602_consen 445 LIEN 448 (526)
T ss_dssp HHTT
T ss_pred cccc
Confidence 6654
No 35
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=61.93 E-value=45 Score=33.45 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred HhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 015383 89 FISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 167 (408)
Q Consensus 89 FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepY-LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~k 167 (408)
|++++|...+.+-+.+..++|..++++.+-.-.+..- ...+--+++.|+++..+ .|..|..|.+.+..++.+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-------~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-------SWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence 4455555555567778889999999988755544322 24555578888877543 579999999999999988
Q ss_pred hCCCCcchHHHHHHHHHHHhcC
Q 015383 168 FGHVYQNLQSRVTRTLLHAFLD 189 (408)
Q Consensus 168 f~~sy~~L~pRI~~tL~k~llD 189 (408)
.... +..-|+.-+.+.+.+
T Consensus 237 ~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 237 NPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred ChHH---HHHHHHHHHHHHHHh
Confidence 6653 666666666666654
No 36
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=56.45 E-value=1e+02 Score=28.21 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH---HHHHhhccchHHHHHH
Q 015383 150 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS---VVHLLILPNLELYLKF 226 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~---aVr~lllP~L~~y~~~ 226 (408)
|..+|--+-..++.+|.+| +++--+.+..+.+.|.|+ ....+..|+..|+.|-.+ -++..++ ..+...
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~k~~l~---~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKVKGQLF---SRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceeehhhhh---HHHHHH
Confidence 5689999999999999996 456667777888888877 477789999999988332 2222111 222222
Q ss_pred hhHhhhhHhhhhhhhHhHHHHHHHHHHHh-hhhhhhhhh
Q 015383 227 LEPEMLLEKQKNEMKRHEAWRVYGALQCA-AGLCVYDRL 264 (408)
Q Consensus 227 Le~~l~~~~~~~~~~r~ea~~V~gaLl~A-~g~~~~~~~ 264 (408)
| .+ +|..+|.-|..+..-+..- -+..++.-+
T Consensus 72 l----~D---~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 72 L----VD---ENPEIRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred H----cC---CCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 2 22 4566787777777666665 334343333
No 37
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=55.35 E-value=11 Score=34.00 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=46.6
Q ss_pred CccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccch--hhhHHHHHHHHhccccCCCCCCcchhHHH
Q 015383 78 GLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL--HQMMPSVITCLVSKRLGNRFSDNHWDLRN 155 (408)
Q Consensus 78 GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYL--HqLlPsvLTCll~k~L~~~~~~~hw~LRd 155 (408)
|+..|+-.+.++...... +-.+.......++-++||+.|+. -++-.+ +..+..+..|+.+ .+...|.
T Consensus 108 G~~~L~~~L~~~~~~~~~-~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s---------~~~~~r~ 176 (187)
T PF06371_consen 108 GLEALLNVLSKLNKKKEK-SEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS---------PNIKTRK 176 (187)
T ss_dssp HHHHHHHHHHHHHTHHCT-CTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T---------TSHHHHH
T ss_pred CHHHHHHHHHHhhhhhhh-cchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC---------CCHHHHH
Confidence 555555554444322222 12456677778888999988874 122222 2345666666643 3458999
Q ss_pred HHHHHHHHHH
Q 015383 156 FVADLIASIC 165 (408)
Q Consensus 156 ~AA~LL~~I~ 165 (408)
.|..+|+.||
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=54.38 E-value=2.9e+02 Score=31.77 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=52.3
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhh
Q 015383 120 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYG 199 (408)
Q Consensus 120 L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YG 199 (408)
|.+.-.+-.++++|..|+. +.|=.+|.-||-.+.+|++.+.+..+ ..++...+.+.+. ++...+.+.
T Consensus 132 Ir~~~i~e~l~~~lkk~L~---------D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~~LL~--D~dp~Vv~n 198 (746)
T PTZ00429 132 IRVSSVLEYTLEPLRRAVA---------DPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLVELLN--DNNPVVASN 198 (746)
T ss_pred CCcHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHHHHhc--CCCccHHHH
Confidence 4455566667777788873 34458999999999999887654322 1234444545443 577888999
Q ss_pred HHHHHHhhC
Q 015383 200 AIQGLAALG 208 (408)
Q Consensus 200 AI~GL~aLG 208 (408)
|+..|..+.
T Consensus 199 Al~aL~eI~ 207 (746)
T PTZ00429 199 AAAIVCEVN 207 (746)
T ss_pred HHHHHHHHH
Confidence 999988884
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=54.30 E-value=13 Score=27.09 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=30.1
Q ss_pred HhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHH
Q 015383 114 LLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASI 164 (408)
Q Consensus 114 LL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I 164 (408)
+..+..-.+++|+.+++|.++.++ .|++-.+|..|+..|+.|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L---------~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLL---------QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHT---------TSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcC
Confidence 344555567888888888888666 133339999999988765
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=54.24 E-value=88 Score=26.44 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhh
Q 015383 160 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNE 239 (408)
Q Consensus 160 LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~ 239 (408)
-|+.++.-.+..-..-...|+.-.++.|-|++ ...+|=|.-+|..+ .++.+.-++|++..++..|-....+ .+.
T Consensus 9 ~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--~rVRy~AcEaL~ni-~k~~~~~~l~~f~~IF~~L~kl~~D---~d~ 82 (97)
T PF12755_consen 9 GLAAVAIALGKDISKYLDEILPPVLKCFDDQD--SRVRYYACEALYNI-SKVARGEILPYFNEIFDALCKLSAD---PDE 82 (97)
T ss_pred HHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC---Cch
Confidence 34445444444444555677777777777655 44588888888888 4667788999999999999887765 456
Q ss_pred hhHhHHH
Q 015383 240 MKRHEAW 246 (408)
Q Consensus 240 ~~r~ea~ 246 (408)
.+|.-|+
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 6777764
No 41
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=51.43 E-value=57 Score=33.98 Aligned_cols=148 Identities=16% Similarity=0.265 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCCc---c-cccchhhhHHHHHHHHhccccCCCC-------------------CCcchhHHHHHHHH
Q 015383 104 LFALMRVARSLLRNPHI---H-IEPYLHQMMPSVITCLVSKRLGNRF-------------------SDNHWDLRNFVADL 160 (408)
Q Consensus 104 L~~LLrmv~ALL~Np~L---~-IepYLHqLlPsvLTCll~k~L~~~~-------------------~~~hw~LRd~AA~L 160 (408)
+...++...+....++- + -++.+.+|+--| |-+.+|-+. ..|.-.-|.-|.++
T Consensus 159 v~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~V----I~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~df 234 (370)
T PF08506_consen 159 VSKALQFLSSVAESPHHKNLFENKPHLQQIIEKV----IFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDF 234 (370)
T ss_dssp HHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHT----HHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHH
T ss_pred HHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHh----ccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHH
Confidence 34467777777776642 2 245666555533 333333210 12445677788889
Q ss_pred HHHHHHHhCCCCcchHH-HHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHH------HH--HhhccchHHHHHHhhHhh
Q 015383 161 IASICTRFGHVYQNLQS-RVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV------VH--LLILPNLELYLKFLEPEM 231 (408)
Q Consensus 161 L~~I~~kf~~sy~~L~p-RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a------Vr--~lllP~L~~y~~~Le~~l 231 (408)
|..+|++|+.....+-. -|...|.+.=.||....-..-||++-+.++.... |. .-+++-..-+...+-|+|
T Consensus 235 l~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL 314 (370)
T PF08506_consen 235 LRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPEL 314 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHh
Confidence 99999999865444433 3333344333478888899999999887773321 11 123444445556777887
Q ss_pred hhHhhhhhhhHhHHHHHHHHHHHh
Q 015383 232 LLEKQKNEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 232 ~~~~~~~~~~r~ea~~V~gaLl~A 255 (408)
..........|.+|-++.-..-+.
T Consensus 315 ~~~~~~~piLka~aik~~~~Fr~~ 338 (370)
T PF08506_consen 315 QPDVNSHPILKADAIKFLYTFRNQ 338 (370)
T ss_dssp H-SS-S-HHHHHHHHHHHHHHGGG
T ss_pred cccCCCCcchHHHHHHHHHHHHhh
Confidence 732334455677887766554443
No 42
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=50.22 E-value=75 Score=30.29 Aligned_cols=92 Identities=15% Similarity=0.374 Sum_probs=64.8
Q ss_pred cCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHH-hcCCCc--ccccchhhhHHHHHHHHhccc--cCCCCC-Cc
Q 015383 76 DSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSL-LRNPHI--HIEPYLHQMMPSVITCLVSKR--LGNRFS-DN 149 (408)
Q Consensus 76 D~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~AL-L~Np~L--~IepYLHqLlPsvLTCll~k~--L~~~~~-~~ 149 (408)
...+-+++|-++.-|-..+.. +|-+.....|+..+.| ...+.+ .+-||..||+| ++.....++ +|.... ..
T Consensus 71 ~~kilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp-~ln~f~~k~~n~gd~i~y~~ 147 (183)
T PF10274_consen 71 GEKILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP-VLNLFKNKNVNLGDGIDYRK 147 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHhcccCCCccccccc
Confidence 344777777777777666654 5888888888888888 456666 78999999999 566555554 222111 24
Q ss_pred chhHHHHHHHHHHHHHHHhCC
Q 015383 150 HWDLRNFVADLIASICTRFGH 170 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf~~ 170 (408)
.=.++|.-..+|..+.+.-|.
T Consensus 148 ~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 148 RKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred ccchhHHHHHHHHHHHHhcCh
Confidence 457899999999888776654
No 43
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=50.12 E-value=1.6e+02 Score=29.75 Aligned_cols=98 Identities=12% Similarity=0.222 Sum_probs=62.8
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHhcCCCCCcchhh
Q 015383 121 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSRVTRTLLHAFLDPTKSLSQHY 198 (408)
Q Consensus 121 ~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~--~sy~~L~pRI~~tL~k~llDp~k~l~t~Y 198 (408)
+++.+...|+..++.|+ |+ |.. .=+.+|+++++.+|-..| .....+...+...|.+++.|...+....=
T Consensus 79 ~v~~~~~tL~~~~~k~l--kk-g~~------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~ 149 (309)
T PF05004_consen 79 FVEDRRETLLDALLKSL--KK-GKS------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARA 149 (309)
T ss_pred HHHHHHHHHHHHHHHHh--cc-CCH------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 55566666777777777 21 221 237789999999999965 77788888999999999999877655433
Q ss_pred hHHHH------HHhhCHHHHHHhhccchHHHHHHhh
Q 015383 199 GAIQG------LAALGPSVVHLLILPNLELYLKFLE 228 (408)
Q Consensus 199 GAI~G------L~aLG~~aVr~lllP~L~~y~~~Le 228 (408)
.++.+ +..-+.+.+.. ++..+..+|....
T Consensus 150 ~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~ 184 (309)
T PF05004_consen 150 ACLEALAICTFVGGSDEEETEE-LMESLESIFLLSI 184 (309)
T ss_pred HHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHh
Confidence 32222 22223444443 3455665555443
No 44
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=49.33 E-value=96 Score=29.16 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=76.0
Q ss_pred cccchhhhHHHHHHHHhcc-------ccCCCC--CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCC
Q 015383 122 IEPYLHQMMPSVITCLVSK-------RLGNRF--SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK 192 (408)
Q Consensus 122 IepYLHqLlPsvLTCll~k-------~L~~~~--~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k 192 (408)
|-|++-+++|.++.=..-+ .+|+.- .||-.++|..|=.+|..+...+.+..+ -..+.......|-| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 4578888999887654443 245532 589999999999999999997665444 44556777778777 33
Q ss_pred Cc-chhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHh
Q 015383 193 SL-SQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 193 ~l-~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A 255 (408)
.+ .--|.-+.=|..+.+..+.. ++..+.+.++..+.. +.+...++.|.+|...+.-.+
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~-k~k~~AvkQE~Ek~~E~~rs~ 138 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSK-KLKENAVKQEIEKQQELIRSV 138 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH-----TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhc-cCCCCcccccHHHHHHHHHHH
Confidence 22 22255566666666665544 466666666666652 334444566666665555444
No 45
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=46.93 E-value=36 Score=37.78 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=70.7
Q ss_pred hhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhcc-------------ccCCCCCCcc
Q 015383 84 PYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSK-------------RLGNRFSDNH 150 (408)
Q Consensus 84 PYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k-------------~L~~~~~~~h 150 (408)
||+.+|+-+....++ -.+.++++++|-..|-+++..- ++.-|--.+-++ ++|
T Consensus 174 k~l~~~~fesflk~l-----~fr~levle~ls~d~i~~Vk~q---vv~~VydLL~a~peqe~nLl~L~INKlG------- 238 (821)
T COG5593 174 KYLKQRIFESFLKNL-----RFRVLEVLEVLSHDPIQYVKKQ---VVRLVYDLLEARPEQEVNLLHLFINKLG------- 238 (821)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHhccchHHHHHHH---HHHHHHHHHhcChHHHHHHHHHHHHhhc-------
Confidence 788888888877764 2345555666655554444322 222111111111 122
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 151 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 151 w~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
+.|+.-|+--+.++-+.....|+++.=|++-.-...+-|+..+.+.|=|++.|...
T Consensus 239 -Dk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt 294 (821)
T COG5593 239 -DKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQT 294 (821)
T ss_pred -cchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHH
Confidence 23665566666667777777899999999999999999999999999999998754
No 46
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=45.11 E-value=67 Score=31.78 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=43.7
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHH---------HHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQS---------RVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~p---------RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
.++-.+|-.|.+.+-.|+-.||..+-.-.. .+.+.+.+.+.+. ....+.=|+-|+..|
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 357899999999999999999965554444 5888888888765 444666677777764
No 47
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.51 E-value=3.9e+02 Score=32.37 Aligned_cols=152 Identities=19% Similarity=0.114 Sum_probs=97.9
Q ss_pred HHHHHHHHHH--HHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhH
Q 015383 153 LRNFVADLIA--SICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEP 229 (408)
Q Consensus 153 LRd~AA~LL~--~I~~kf~~sy-~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~ 229 (408)
.|--|+.|++ .|...|++-- ...-..++.+..-.+. .++....=+||-++..+=..-=..++-|+++.++..+-.
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ 876 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence 4556665554 3666665432 3345666666665553 556667778888888775555566778888888877666
Q ss_pred hhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhhhhhhccCCC---ccccc-----cccCcccccCCCccccccccccCC
Q 015383 230 EMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPP---KQSRW-----ESNRKGMIVFPSKRKASMDNLMLQ 301 (408)
Q Consensus 230 ~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
... +.+++.--+|...|=+-+.+|-.+.++.+++--- ..-.| +...+.+..++.++..+.+-..--
T Consensus 877 ls~------d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~R~~rK~a~~~d~~~~~~s~d~s~~~ 950 (1176)
T KOG1248|consen 877 LSH------DHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRRRKKRKKAMIVDIEDRSDSTDGSQKA 950 (1176)
T ss_pred HHH------hhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc
Confidence 432 3456666777777777777788888887754000 00122 244556777888888888888888
Q ss_pred CCccccccCCC
Q 015383 302 PPVKKMATLGP 312 (408)
Q Consensus 302 ~~~~~~~~~~~ 312 (408)
|+-++-.++-.
T Consensus 951 s~~~~a~~i~d 961 (1176)
T KOG1248|consen 951 SAQKKAKTIED 961 (1176)
T ss_pred ccccccchhHH
Confidence 88887666543
No 48
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=44.40 E-value=2.2e+02 Score=30.43 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=78.5
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHhcCCCCCcch
Q 015383 121 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV----YQNLQSRVTRTLLHAFLDPTKSLSQ 196 (408)
Q Consensus 121 ~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s----y~~L~pRI~~tL~k~llDp~k~l~t 196 (408)
.|.|++.+|+-.+...+-... + .+| ||--+.+-+++..+++. ...+-++++..+..+-.+|.+|-.+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~--s--~EN-----eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPG--S--AEN-----EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT---S--TC------HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCC--C--ccc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 678899888888888874422 1 344 34444555555555444 4566778888888888999999999
Q ss_pred hh--hHHHHHHhhC----HH---HHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhh-hhhhhhhhh
Q 015383 197 HY--GAIQGLAALG----PS---VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG-LCVYDRLKT 266 (408)
Q Consensus 197 ~Y--GAI~GL~aLG----~~---aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g-~~~~~~~~~ 266 (408)
|| =+|..|.... ++ .++..++|-+..++. .... .=--...++.+.|+..-. .-+-+.-+.
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq---~dV~-------EF~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQ---QDVQ-------EFIPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHH---TT-T-------TTHHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99 4444444442 23 455666665554432 1111 112345778888877754 112122222
Q ss_pred h---ccCCCccccccccCcc
Q 015383 267 V---LLRPPKQSRWESNRKG 283 (408)
Q Consensus 267 ~---~~~~~~~~~~~~~~~~ 283 (408)
. +.+| ..|...|+|
T Consensus 160 L~~~Ll~p---~lWe~~gni 176 (435)
T PF03378_consen 160 LFPPLLSP---ALWERRGNI 176 (435)
T ss_dssp GHHHHTSG---GGGGSTTTH
T ss_pred HHHHHcCc---chhccCCCc
Confidence 2 3344 678877765
No 49
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=43.99 E-value=71 Score=38.76 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCcchhh--hHHHHHHhhCHHHHHHhhccchHHHHHH
Q 015383 150 HWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHY--GAIQGLAALGPSVVHLLILPNLELYLKF 226 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf~~sy~-~L~pRI~~tL~k~llDp~k~l~t~Y--GAI~GL~aLG~~aVr~lllP~L~~y~~~ 226 (408)
..++||.|-++++.|.+--|..|- .+-+.+--|+.+.+.--...++.|| ||..+...-|. ...++=|.+....+.
T Consensus 577 s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~rg~q~hvl~~tvh~ll~a~~~v~~~g~--Ld~~~~~~i~i~~e~ 654 (1364)
T KOG1823|consen 577 SAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKRGFQVHVLSYTVHYLLGAMKNVLKAGS--LDTCLDPIIKIFNEN 654 (1364)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccc--HHHHHHHHHHHHHHH
Confidence 348999999999999988776543 3455666677777765666677777 66666655554 455556666666666
Q ss_pred hhHhhhhHh
Q 015383 227 LEPEMLLEK 235 (408)
Q Consensus 227 Le~~l~~~~ 235 (408)
+--+...++
T Consensus 655 ~fg~v~~ek 663 (1364)
T KOG1823|consen 655 LFGEVGKEK 663 (1364)
T ss_pred HHHHHhhhh
Confidence 655555443
No 50
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=42.86 E-value=44 Score=33.99 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhh-CHHHHHHhhccchHH----------H---------HHHhhHhhhhHhhhh
Q 015383 179 VTRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSVVHLLILPNLEL----------Y---------LKFLEPEMLLEKQKN 238 (408)
Q Consensus 179 I~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~~aVr~lllP~L~~----------y---------~~~Le~~l~~~~~~~ 238 (408)
.++++.++|.|.+.++..+|-|+.-|..+ |+.+++..---+... + ...|...+.+++ ..
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~des-q~ 82 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDES-QE 82 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccc-cc
Confidence 35667777777777778888888877777 444444322111111 1 112333344443 36
Q ss_pred hhhHhHHHHHHHHHH
Q 015383 239 EMKRHEAWRVYGALQ 253 (408)
Q Consensus 239 ~~~r~ea~~V~gaLl 253 (408)
.++||||-.+.|++.
T Consensus 83 pmvRhEAaealga~~ 97 (289)
T KOG0567|consen 83 PMVRHEAAEALGAIG 97 (289)
T ss_pred hHHHHHHHHHHHhhc
Confidence 778999999999987
No 51
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.48 E-value=3.1e+02 Score=30.91 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhc---CCCch------HHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 015383 47 QLYFDKIRELTV---SRSNS------TVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN 117 (408)
Q Consensus 47 QlYf~kIteall---~~~d~------~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~N 117 (408)
-.||++|-.++- .++|. ++...-+..+-+...-.-=+|-|+..+.|.+... |...=..++.-+.-|-.=
T Consensus 120 ~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 120 LVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred ccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcC
Confidence 347777755532 12222 2333333333333332444788888888877664 444445577788888888
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHhcCCCCCcch
Q 015383 118 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQ 196 (408)
Q Consensus 118 p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~-L~pRI~~tL~k~llDp~k~l~t 196 (408)
|.+.+=.|+..+++-+++-+ .|++-++|+.+..+|+.....-.++-.+ =..|++.++...+..+.. ..
T Consensus 198 P~~~m~~yl~~~ldGLf~~L---------sD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~--~i 266 (675)
T KOG0212|consen 198 PDLEMISYLPSLLDGLFNML---------SDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP--EI 266 (675)
T ss_pred CcHHHHhcchHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcH--HH
Confidence 99999999999999777765 4677799999999888877765544444 255666666655543322 22
Q ss_pred hhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhh
Q 015383 197 HYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLL 233 (408)
Q Consensus 197 ~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~ 233 (408)
+--|+.=+..|=+-.=+. ++|+++.++..+-|-+.+
T Consensus 267 q~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 267 QLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCC
Confidence 233444444442222222 678888888877776654
No 52
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.73 E-value=1.5e+02 Score=32.61 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhh
Q 015383 152 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 231 (408)
Q Consensus 152 ~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 231 (408)
.+|..|++.|+....-.-+..-+-++.++......|.|+.+ .....-|+.||...-..+.-.-+-|.+-.+.-.+.+..
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH
Confidence 78888888888876544444455677888888999999998 77788899999988666665557788777877777777
Q ss_pred hhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhh
Q 015383 232 LLEKQKNEMKRHEAWRVYGALQCAAGLCVYDR 263 (408)
Q Consensus 232 ~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~ 263 (408)
.++ +...|.-|...+|+|..-+|.--.+.
T Consensus 352 ~se---~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 352 DSE---DDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred Hhc---ChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 653 45679999999999999888765444
No 53
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=40.22 E-value=1.1e+02 Score=26.03 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=51.9
Q ss_pred HHHHHHHhcC--CCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhh
Q 015383 180 TRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 257 (408)
Q Consensus 180 ~~tL~k~llD--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g 257 (408)
+..+...+.| ..++...+==++.+|..|=. .....+-+..+.+...|+..+.. +.-|.+|.+|..+++..++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEI-----PELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHCC
Confidence 4455566777 77788877778888777644 45555566677778888887753 3568889999999988865
Q ss_pred h
Q 015383 258 L 258 (408)
Q Consensus 258 ~ 258 (408)
.
T Consensus 87 ~ 87 (107)
T PF08064_consen 87 E 87 (107)
T ss_pred H
Confidence 4
No 54
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.02 E-value=1.2e+02 Score=37.56 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=70.6
Q ss_pred cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhc-CCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHH
Q 015383 80 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 158 (408)
Q Consensus 80 ~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~-Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA 158 (408)
+-+.|-|++-+...+..+ .....-...+.++++.+- |.+++-+.-...+-- ++-|++ .|+.-+.|+.||
T Consensus 1521 ~~l~~e~l~~l~~~~~~~-~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~-l~~s~l--------~D~~i~vre~Aa 1590 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADS-STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRK-LLESLL--------NDDQIEVREEAA 1590 (1710)
T ss_pred hhhHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-HHHHHH--------cchHHHHHHHHH
Confidence 345566666666522222 344444446777766553 333333333333333 222222 355668999999
Q ss_pred HHHHHHHH-HhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 159 DLIASICT-RFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 159 ~LL~~I~~-kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
.+|+-+.+ .|....+ +..++..+.+.-+.++....-||+.||.|+
T Consensus 1591 ~~Lsgl~~~s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~ 1636 (1710)
T KOG1851|consen 1591 KCLSGLLQGSKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAI 1636 (1710)
T ss_pred HHHHHHHhccccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHH
Confidence 99988653 4444333 778888888888888899999999999987
No 55
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=37.51 E-value=48 Score=32.72 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=15.8
Q ss_pred ecCCCcccccHHHHHHHHHHHHHhc
Q 015383 34 IRLPVKHVLSKELQLYFDKIRELTV 58 (408)
Q Consensus 34 vKp~vkHvLSkElQlYf~kIteall 58 (408)
++....|.+..+...++.+....+.
T Consensus 199 l~~~~~~~lr~~~~~~l~~~i~~L~ 223 (367)
T PF04286_consen 199 LQEDPDHPLRQEIDQKLRELIERLL 223 (367)
T ss_pred HHhCcccHhHHHHHHHHHHHHHHHh
Confidence 4445567777777766666665555
No 56
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.49 E-value=1.4e+02 Score=25.16 Aligned_cols=67 Identities=21% Similarity=0.117 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccch
Q 015383 150 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNL 220 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L 220 (408)
.-.+|-.+=..|..++++.+ .-..-.++|+..++..+.|++ --.+..||.||.+|+..-=+. ++|.|
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~~p~~-vl~~L 82 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADRHPDE-VLPIL 82 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHHChHH-HHHHH
Confidence 34689999999999999877 233447899999999998874 344569999999997654332 34433
No 57
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.22 E-value=1.8e+02 Score=34.26 Aligned_cols=115 Identities=21% Similarity=0.161 Sum_probs=81.4
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcC----CCC-Ccc
Q 015383 121 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD----PTK-SLS 195 (408)
Q Consensus 121 ~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llD----p~k-~l~ 195 (408)
-+-|.+..|+|-+|.|+=-.. ...|--+-+++....... ++|++.=..|+...|+. ++. +-.
T Consensus 902 vllp~~~~LlPLLLq~Ls~~D---------~~v~vstl~~i~~~l~~~----~tL~t~~~~Tlvp~lLsls~~~~n~~~~ 968 (1030)
T KOG1967|consen 902 VLLPQFPMLLPLLLQALSMPD---------VIVRVSTLRTIPMLLTES----ETLQTEHLSTLVPYLLSLSSDNDNNMMV 968 (1030)
T ss_pred hhccchhhHHHHHHHhcCCCc---------cchhhhHhhhhhHHHHhc----cccchHHHhHHHHHHHhcCCCCCcchhH
Confidence 567888888888888873322 244666666666666653 45666666666665553 333 366
Q ss_pred hhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHH
Q 015383 196 QHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGA 251 (408)
Q Consensus 196 t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~ga 251 (408)
.+--|+.||.+|-...=-..++|+-+.....|.+.|++.| +.+|.||-++.+.
T Consensus 969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK---RlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK---RLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH---HHHHHHHHHHhhh
Confidence 7888999999887644455688999999999999998744 6789999888765
No 58
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.21 E-value=6.1e+02 Score=30.25 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=81.6
Q ss_pred cchhhHHHhHHHHh------hccCCHHHHHHHHHHHHHHhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchhHH
Q 015383 82 LVPYFTYFISEEVT------RSLKNFSLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLR 154 (408)
Q Consensus 82 LLPYfv~FIse~V~------~nl~nl~~L~~LLrmv~ALL~Np~L-~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LR 154 (408)
-+|-++.|+.+-++ ...+|.....-.++|+-+|. ..| .=.||-.++= -.|.--|.+. ...+---||
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~s~~~~~mE-~flv~hVfP~----f~s~~g~Lr 479 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKKSPYKSQME-YFLVNHVFPE----FQSPYGYLR 479 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccCCchHHHHH-HHHHHHhhHh----hcCchhHHH
Confidence 35556666666655 34456666666677776665 222 3344443222 2222222222 233445799
Q ss_pred HHHHHHHHHHH-HHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh-CHHH-HHHhhccchHHHHHHh
Q 015383 155 NFVADLIASIC-TRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV-VHLLILPNLELYLKFL 227 (408)
Q Consensus 155 d~AA~LL~~I~-~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~~a-Vr~lllP~L~~y~~~L 227 (408)
-.|+-+++.+| -.|++ ++.-..+...-.+.|.+ ++.++..--|..+|..| ..+. ....+-||++.+++.|
T Consensus 480 arac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred HHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence 99999999999 67876 55555666666777775 67788888999999988 3222 2233556666655544
No 59
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.12 E-value=2e+02 Score=33.98 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcC------CCchHHHHHHHHhhhhcCCccccchhhHHHh---HHHHhhccCCHHHHHHHHHHHHHHhcC
Q 015383 47 QLYFDKIRELTVS------RSNSTVFKQALLSLAMDSGLHPLVPYFTYFI---SEEVTRSLKNFSLLFALMRVARSLLRN 117 (408)
Q Consensus 47 QlYf~kIteall~------~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FI---se~V~~nl~nl~~L~~LLrmv~ALL~N 117 (408)
|.||-.|.-.+++ ++.....-+||..+=++--.++++|.+-.-. -+.+. +.|...-...++.+.-++.-
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls--~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALS--MPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcC--CCccchhhhHhhhhhHHHHh
Confidence 7789888777653 2223445678865444554577777654332 22221 13433322233444444444
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCC
Q 015383 118 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKS 193 (408)
Q Consensus 118 p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy-~~L~pRI~~tL~k~llDp~k~ 193 (408)
-+=-+..|+--++|.+++.- + ...++--..|+.|=+.|..|-++--..| ..-|+.|++.+.+.|-||++-
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls--~----~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLS--S----DNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred ccccchHHHhHHHHHHHhcC--C----CCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 44446778888888776532 2 1223347899999999999999654322 334899999999999988763
No 60
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=34.02 E-value=3.6e+02 Score=26.72 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=66.0
Q ss_pred CchHHHHHHHHhhh-------hcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHH
Q 015383 61 SNSTVFKQALLSLA-------MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSV 133 (408)
Q Consensus 61 ~d~~~r~~AL~sL~-------tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsv 133 (408)
+|+..|.+|+..|. .|.=-.+-+..++.|+.+ .+.|...+...++-..||+..+++.-+- ...+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~----rl~D~~~~~~~l~gl~~L~~~~~~~~~~-----~~~i 81 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCS----RLDDHACVQPALKGLLALVKMKNFSPES-----AVKI 81 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHhCcCCChhh-----HHHH
Confidence 45667777765444 222122234444555554 4567777777789999999887754443 3334
Q ss_pred HHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc
Q 015383 134 ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 188 (408)
Q Consensus 134 LTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~ll 188 (408)
+.-+...--+ ...--.-|...=+++..+..+|...-.++..-.+..+.+..-
T Consensus 82 ~~~l~~~~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~ 133 (262)
T PF14500_consen 82 LRSLFQNVDV---QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID 133 (262)
T ss_pred HHHHHHhCCh---hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc
Confidence 4433321111 112224577777788888777766555555566666666543
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.69 E-value=1.2e+02 Score=36.36 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHhcCCCchHHHHH----HHHhhhhc-C--CccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHh
Q 015383 43 SKELQLYFDKIRELTVSRSNSTVFKQ----ALLSLAMD-S--GLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL 115 (408)
Q Consensus 43 SkElQlYf~kIteall~~~d~~~r~~----AL~sL~tD-~--GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL 115 (408)
+.-++.|+..|.+.++++ ++.... |+.++-.+ . .=...++-++.+|+--++.+ +-++...-+..+..++
T Consensus 780 ~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 455788999999998753 332221 22222111 1 11123333334444333332 2334444455555554
Q ss_pred -cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCC
Q 015383 116 -RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 170 (408)
Q Consensus 116 -~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~ 170 (408)
.=|-..+-+|+.+|||+++.-. . +-.-.+|-..-.|+..+|++||-
T Consensus 856 ~~~pe~~l~~~~~~LL~sll~ls--~-------d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 856 YKFPEECLSPHLEELLPSLLALS--H-------DHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HcCCHHHHhhhHHHHHHHHHHHH--H-------hhhHHHHHHHHHHHHHHHHHhCH
Confidence 3466688999999999998822 2 11237899999999999999993
No 62
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=33.46 E-value=3e+02 Score=31.59 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCC--cchh
Q 015383 120 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS--LSQH 197 (408)
Q Consensus 120 L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~--l~t~ 197 (408)
+...||+.+|+.-+|.-+=++.- ..|..||++++.|..-.++--.+=--+=....+-.-++..-| ++.+
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p---------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsi 666 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPP---------DVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSI 666 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHH
Q ss_pred hhHHHHHHhh-CHH----HHHHhhccchHHHHHHhhHhhhhHh--------------------------------hhhhh
Q 015383 198 YGAIQGLAAL-GPS----VVHLLILPNLELYLKFLEPEMLLEK--------------------------------QKNEM 240 (408)
Q Consensus 198 YGAI~GL~aL-G~~----aVr~lllP~L~~y~~~Le~~l~~~~--------------------------------~~~~~ 240 (408)
.||++++... |-. -++. |+|.|-.++..=.+...... .-|..
T Consensus 667 l~Ai~~I~sv~~~~~mqpPi~~-ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKe 745 (975)
T COG5181 667 LKAICSIYSVHRFRSMQPPISG-ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKE 745 (975)
T ss_pred HHHHHHHhhhhcccccCCchhh-ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHH
Q ss_pred hHhHHHHHHHHHHHhhh
Q 015383 241 KRHEAWRVYGALQCAAG 257 (408)
Q Consensus 241 ~r~ea~~V~gaLl~A~g 257 (408)
.|..|..-+|-+-+|+|
T Consensus 746 iRR~A~~tfG~Is~aiG 762 (975)
T COG5181 746 IRRNATETFGCISRAIG 762 (975)
T ss_pred HHHhhhhhhhhHHhhcC
No 63
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=32.71 E-value=6e+02 Score=26.60 Aligned_cols=125 Identities=11% Similarity=0.107 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC--CCcchhHHHHHH---HHHHHHHHHhCCCCc
Q 015383 99 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF--SDNHWDLRNFVA---DLIASICTRFGHVYQ 173 (408)
Q Consensus 99 ~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~--~~~hw~LRd~AA---~LL~~I~~kf~~sy~ 173 (408)
.|++.+.+++.=.-..++|.+|+...-+.+|.-.+...+-.+...++. ......--|.++ ..|+.++..+..--.
T Consensus 154 ~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k 233 (356)
T PF03542_consen 154 TDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSK 233 (356)
T ss_pred CCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 578888888888888889999888766766666444443322221211 223444455555 455666666665556
Q ss_pred chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC--HHHHHHhhccchHHHHHHhhHhh
Q 015383 174 NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG--PSVVHLLILPNLELYLKFLEPEM 231 (408)
Q Consensus 174 ~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG--~~aVr~lllP~L~~y~~~Le~~l 231 (408)
+-+..|+++|...+.. .. |..|+.+|- -.-+...+.+.++.++..|....
T Consensus 234 ~~qd~iV~~l~~GL~s-~~-------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~ 285 (356)
T PF03542_consen 234 QEQDEIVRALESGLGS-KT-------AKPCIHALTICCYEMPDSMKKLLPSILLKLSKIS 285 (356)
T ss_pred hHHHHHHHHHHHHhcc-Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 6688999999888764 11 333444332 12234445666667766665543
No 64
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.62 E-value=1.9e+02 Score=31.90 Aligned_cols=133 Identities=25% Similarity=0.281 Sum_probs=78.4
Q ss_pred ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Q 015383 81 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 160 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~L 160 (408)
..+|.||.|........+ .++.-..+-.++.--..+.+..++ +--+|.++.|+.+. |-++|+.|.--
T Consensus 109 G~v~~lV~~l~~~~~~~l-q~eAAWaLTnIAsgtse~T~~vv~---agavp~fi~Ll~s~---------~~~v~eQavWA 175 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTL-QFEAAWALTNIASGTSEQTKVVVD---AGAVPIFIQLLSSP---------SADVREQAVWA 175 (514)
T ss_pred CcHHHHHHHHccCCChhH-HHHHHHHHHHHhcCchhhcccccc---CCchHHHHHHhcCC---------cHHHHHHHHHH
Confidence 578999998873322211 233444455555544556666665 44577778887554 33778888888
Q ss_pred HHHHHHHhCCCCc--chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh--CH------HHHHHhhccchHHHHHHhhH
Q 015383 161 IASICTRFGHVYQ--NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL--GP------SVVHLLILPNLELYLKFLEP 229 (408)
Q Consensus 161 L~~I~~kf~~sy~--~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL--G~------~aVr~lllP~L~~y~~~Le~ 229 (408)
|+.|...- ..+. =|..-++..|+..+..+.+ +..+=-+.+.|+.| |. +.|+. ++|-|......-++
T Consensus 176 LgNIagds-~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~-iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 176 LGNIAGDS-PDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAP-ILPALLRLLHSTDE 251 (514)
T ss_pred HhccccCC-hHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHH-HHHHHHHHHhcCCH
Confidence 87776431 1111 1233455667777764444 78888899999998 65 34443 55655554443333
No 65
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=32.59 E-value=77 Score=28.80 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred cCCCceeeecCCCcccccHHHHHHHHHHHHHhcCC---------Cc--------------hHHHHHHHHhhhhcCCcccc
Q 015383 26 REDGISVDIRLPVKHVLSKELQLYFDKIRELTVSR---------SN--------------STVFKQALLSLAMDSGLHPL 82 (408)
Q Consensus 26 ~~d~~~v~vKp~vkHvLSkElQlYf~kIteall~~---------~d--------------~~~r~~AL~sL~tD~GL~qL 82 (408)
-++.+...++|..+|..+...+.=...-....+|. ++ .++...|-++|.+||.++.|
T Consensus 50 ~~~~v~L~L~~~q~HL~~~~a~~~L~~ALs~~~g~~i~L~I~~~~~~~~~TP~e~r~~i~~erl~qA~~~l~~D~~Vq~L 129 (142)
T PF12170_consen 50 EDDQVCLHLRPSQKHLNNDSAQEQLQQALSEYLGEPIKLSIEEGDNPARETPLEIRQRIYQERLQQAKQSLQNDPNVQFL 129 (142)
T ss_dssp -SSEEEEEE-GGGTTT--HHHHHHHHHHHHHHHSS--EEEEEE---TTS--HHHHHHHHHHHHHHHHHHHHHHT-S----
T ss_pred cCCEEEEEEChhhHhhCCHHHHHHHHHHHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45777899999999999998665444433332221 11 12345688999999999988
Q ss_pred chhh
Q 015383 83 VPYF 86 (408)
Q Consensus 83 LPYf 86 (408)
.=.|
T Consensus 130 ~~~F 133 (142)
T PF12170_consen 130 QQRF 133 (142)
T ss_dssp ----
T ss_pred HHHh
Confidence 7544
No 66
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=32.01 E-value=1.4e+02 Score=36.14 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=83.9
Q ss_pred CchHHHHHHHHhhhh-----------cCCc--cccchhhHHHhHHH--------HhhccCCHHHH-HHHHHHHHHHhcC-
Q 015383 61 SNSTVFKQALLSLAM-----------DSGL--HPLVPYFTYFISEE--------VTRSLKNFSLL-FALMRVARSLLRN- 117 (408)
Q Consensus 61 ~d~~~r~~AL~sL~t-----------D~GL--~qLLPYfv~FIse~--------V~~nl~nl~~L-~~LLrmv~ALL~N- 117 (408)
++..+|-.||..|.. |.-| .-|+|.+-++..+. +..|+..+... .+.+..++++-+|
T Consensus 474 s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g 553 (1431)
T KOG1240|consen 474 SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG 553 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 344567667755532 3332 34788888888773 22233333332 2467777777666
Q ss_pred ----------CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHH
Q 015383 118 ----------PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLH 185 (408)
Q Consensus 118 ----------p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s--y~~L~pRI~~tL~k 185 (408)
+...-+-|+|+|.-.|=--+++=-.++.+ -+|.-=-+-|..+|.=||.. +.. |+..|..
T Consensus 554 ~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~-----~Vkr~Lle~i~~LC~FFGk~ksND~----iLshLiT 624 (1431)
T KOG1240|consen 554 MLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP-----IVKRALLESIIPLCVFFGKEKSNDV----ILSHLIT 624 (1431)
T ss_pred cccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHhhhcccccc----hHHHHHH
Confidence 12244667777766543333321111211 23333223377788777642 222 3334444
Q ss_pred HhcCCCCC-cchhhhHHHHHHhh-CHHHHHHhhccchHH
Q 015383 186 AFLDPTKS-LSQHYGAIQGLAAL-GPSVVHLLILPNLEL 222 (408)
Q Consensus 186 ~llDp~k~-l~t~YGAI~GL~aL-G~~aVr~lllP~L~~ 222 (408)
.|-|.+.- -+.-|-.|.|++.+ |+..+...++|.|-.
T Consensus 625 fLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 625 FLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ 663 (1431)
T ss_pred HhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence 44555433 36677888888877 888888888886644
No 67
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.81 E-value=1.4e+02 Score=37.05 Aligned_cols=78 Identities=13% Similarity=0.336 Sum_probs=59.5
Q ss_pred hcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHH
Q 015383 75 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLR 154 (408)
Q Consensus 75 tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LR 154 (408)
-.|-+.+|+|.+.+|=.+- |...=..|..+=.+|+.-+..-++.|+..++-=+|-- .++..|+.|
T Consensus 992 l~p~l~kLIPrLyRY~yDP------~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~---------lt~kewRVR 1056 (1702)
T KOG0915|consen 992 LEPYLKKLIPRLYRYQYDP------DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN---------LTSKEWRVR 1056 (1702)
T ss_pred hhhHHHHhhHHHhhhccCC------cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh---------ccchhHHHH
Confidence 3466778888888875542 2334445778888999999999999999888755432 256789999
Q ss_pred HHHHHHHHHHHHH
Q 015383 155 NFVADLIASICTR 167 (408)
Q Consensus 155 d~AA~LL~~I~~k 167 (408)
+-+.--|..+++.
T Consensus 1057 easclAL~dLl~g 1069 (1702)
T KOG0915|consen 1057 EASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999887
No 68
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=30.83 E-value=4.1e+02 Score=24.14 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh-----CH-HHHHHhhccchHHH
Q 015383 151 WDLRNFVADLIASICTRFG-HVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL-----GP-SVVHLLILPNLELY 223 (408)
Q Consensus 151 w~LRd~AA~LL~~I~~kf~-~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL-----G~-~aVr~lllP~L~~y 223 (408)
.+=|-.+..++..+|+.++ ...-.=....++.+.+.+-. ..+..+...|+..|..+ |. +-.|....|+++.+
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 3557788889988888863 11111133455666666654 45566777888887766 22 45899999999999
Q ss_pred HHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 224 LKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 224 ~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
...+-..+.+ .....++-.+...|+..-.+.
T Consensus 118 i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 118 IQSLLQLLQD-----SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHhc-----cccHHHHHHHHHHHHHHCCcc
Confidence 8877665542 223344455555555543333
No 69
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=30.68 E-value=6.1e+02 Score=27.48 Aligned_cols=173 Identities=20% Similarity=0.215 Sum_probs=89.8
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCCCcc--cccch--hhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhC
Q 015383 94 VTRSLKNFSLLFALMRVARSLLRNPHIH--IEPYL--HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG 169 (408)
Q Consensus 94 V~~nl~nl~~L~~LLrmv~ALL~Np~L~--IepYL--HqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~ 169 (408)
+-.|+.......-++|++. +.++... +--.| ..|+|-++.++ . ....+..-.-||.+|..|++...
T Consensus 26 llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L------~--p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 26 LLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLL------S--PSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHh------C--CCCCHHHHHHHHHHHHHHHHHhh
Confidence 3344445555556777775 5553332 21122 56788777777 1 24557889999999999999876
Q ss_pred CCCcc---------h-----HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHh
Q 015383 170 HVYQN---------L-----QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEK 235 (408)
Q Consensus 170 ~sy~~---------L-----~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~ 235 (408)
+...+ | .+..+..|.+..++..+ -++.+.|+.. +-.+|-.+-..|...+.......
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~----~s~lvn~v~I-----lieLIRknnsdy~~~~~~~~~~~- 165 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG----GSSLVNGVSI-----LIELIRKNNSDYDEQLYTTIESH- 165 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC----cchHHHHHHH-----HHHHHHhcccccchhhccccccC-
Confidence 54433 1 34556666677765422 2333344332 22223333333332211100000
Q ss_pred hhhhhhHhHHHHHHHHHHHhhhhhhhhhhhhhccCCCccccc-cccCcccccCCCcc
Q 015383 236 QKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRW-ESNRKGMIVFPSKR 291 (408)
Q Consensus 236 ~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 291 (408)
-...| .--+.|-++.++...+.+..+.. ..||....+ .+.|..++|....|
T Consensus 166 --~p~~r--dpi~l~~lL~~~~~~l~~f~~lL-~~~~~~~~l~Tt~G~l~~PLG~~R 217 (475)
T PF04499_consen 166 --PPSER--DPIYLGTLLKAFSPRLPDFHKLL-LNPPKKPPLETTFGVLIPPLGFER 217 (475)
T ss_pred --CCCcc--chhhHHHHHHHHHHhHHHHHHHH-hchhhccccccCCCCCCCCcchHH
Confidence 00111 13355678888777666666544 444444443 35666677665555
No 70
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=30.43 E-value=6.2e+02 Score=26.08 Aligned_cols=144 Identities=13% Similarity=0.209 Sum_probs=86.5
Q ss_pred CccccchhhHHHhHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCCc--ccccchhh-hHHHHHHHHhccccCCCCCCc
Q 015383 78 GLHPLVPYFTYFISEEVTRSL-----KNFSLLFALMRVARSLLRNPHI--HIEPYLHQ-MMPSVITCLVSKRLGNRFSDN 149 (408)
Q Consensus 78 GL~qLLPYfv~FIse~V~~nl-----~nl~~L~~LLrmv~ALL~Np~L--~IepYLHq-LlPsvLTCll~k~L~~~~~~~ 149 (408)
.++.-++.|++||...+.... .+.......+|..-.++.||.| .+..=... ++--.+.++..... +
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~-~----- 105 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS-P----- 105 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC-C-----
Confidence 466778999999999988754 2466678899999999999987 44322222 33333444433322 1
Q ss_pred chhHHHHHHHHHHHHH-HHhCCCC-cchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHh
Q 015383 150 HWDLRNFVADLIASIC-TRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 227 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~-~kf~~sy-~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 227 (408)
...+...|--|. .+|+..+ +.-++..+-+.+..+.|+-.+....+.++..+..|-.+.-.. ...+...+...|
T Consensus 106 ----K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~-M~~~~~~W~~~l 180 (372)
T PF12231_consen 106 ----KSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ-MIKHADIWFPIL 180 (372)
T ss_pred ----HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 222222333222 3466544 222333333344555666777888899999999887766544 456666666655
Q ss_pred hHhhh
Q 015383 228 EPEML 232 (408)
Q Consensus 228 e~~l~ 232 (408)
-+.+.
T Consensus 181 ~~~l~ 185 (372)
T PF12231_consen 181 FPDLL 185 (372)
T ss_pred HHHHh
Confidence 55554
No 71
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=27.50 E-value=2.3e+02 Score=25.08 Aligned_cols=94 Identities=19% Similarity=0.115 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh---CHHHHHHhhccchHHHHHHhhHhhhh
Q 015383 157 VADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLL 233 (408)
Q Consensus 157 AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~ 233 (408)
++.+|..|++-.-+ ..-.++|++.+.+.|.|..+..-..|=|+.=|..| |++-|-.-+.-|+..+-..-+-...+
T Consensus 18 ~~~~m~eIa~~t~~--~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d 95 (123)
T cd03571 18 SGTLMAEIARATYN--YVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYID 95 (123)
T ss_pred CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeC
Confidence 46778888876332 35678999999999999999999999999999888 88765555566655544433222222
Q ss_pred Hh--hhhhhhHhHHHHHHHHH
Q 015383 234 EK--QKNEMKRHEAWRVYGAL 252 (408)
Q Consensus 234 ~~--~~~~~~r~ea~~V~gaL 252 (408)
++ .--..+|.-|.++...|
T Consensus 96 ~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 96 ENGKDQGINVREKAKEILELL 116 (123)
T ss_pred CCCCchhHHHHHHHHHHHHHh
Confidence 21 12234677777776554
No 72
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.25 E-value=4.8e+02 Score=23.73 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 015383 106 ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF 168 (408)
Q Consensus 106 ~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf 168 (408)
..+.++.-|+.|..+.....+ +.-++.|+ .|++..+|+.|..++..+..+.
T Consensus 44 ~al~~Ls~Li~~d~ik~k~~l---~~~~l~~l---------~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 44 TALLVLSHLILEDMIKVKGQL---FSRILKLL---------VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHcCceeehhhh---hHHHHHHH---------cCCCHHHHHHHHHHHHHHHHhc
Confidence 467777889999999888665 34456666 3567799999999999999883
No 73
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.02 E-value=3.6e+02 Score=22.31 Aligned_cols=37 Identities=16% Similarity=0.434 Sum_probs=30.4
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhC
Q 015383 124 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG 169 (408)
Q Consensus 124 pYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~ 169 (408)
.|.|.++--+++|++.++ . .-|++.+.++..+|++-.
T Consensus 32 ~~~~~vv~~~i~~~le~~--~-------~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 32 EQHHEVVKVLLTCALEEK--R-------TYREMYSVLLSRLCQANV 68 (113)
T ss_pred cchHHHHHHHHHHHHcCC--c-------cHHHHHHHHHHHHHHcCC
Confidence 488999999999999873 1 349999999999997743
No 74
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=25.99 E-value=2.1e+02 Score=30.64 Aligned_cols=176 Identities=24% Similarity=0.324 Sum_probs=94.7
Q ss_pred ccHHHHHH--HHHHHHHhcCCCchHHH-H-----HHHHhhhhcCCccc-----cchhhHHHhHHHHhhccCCHHHHHHHH
Q 015383 42 LSKELQLY--FDKIRELTVSRSNSTVF-K-----QALLSLAMDSGLHP-----LVPYFTYFISEEVTRSLKNFSLLFALM 108 (408)
Q Consensus 42 LSkElQlY--f~kIteall~~~d~~~r-~-----~AL~sL~tD~GL~q-----LLPYfv~FIse~V~~nl~nl~~L~~LL 108 (408)
.+.|+|+| |-++|.++.++ |-+.. . .-+-|-++.|-|++ .+|.|+.|.-+ +.+++-.++.-..+-
T Consensus 63 i~meqq~~~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~-~q~~mlqfEAaWalT 140 (526)
T COG5064 63 IPMEQQFYSELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE-IQRDMLQFEAAWALT 140 (526)
T ss_pred CchhHHhhhhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh-cchhHHHHHHHHHHh
Confidence 56777764 34567777653 32211 1 12346788888887 58999999863 233222232222222
Q ss_pred HHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHh
Q 015383 109 RVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR-FGHVYQNLQSRVTRTLLHAF 187 (408)
Q Consensus 109 rmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~k-f~~sy~~L~pRI~~tL~k~l 187 (408)
.++.-=.+-.++-++.= -+|-++..+.+. .-++||.|-=-|+.|.-. -+-...-|+.-.+..++..|
T Consensus 141 NiaSGtt~QTkvVvd~~---AVPlfiqlL~s~---------~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll 208 (526)
T COG5064 141 NIASGTTQQTKVVVDAG---AVPLFIQLLSST---------EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLL 208 (526)
T ss_pred hhccCcccceEEEEeCC---chHHHHHHHcCc---------hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHH
Confidence 22211122233344432 245555554332 125677776666666421 00111234555667777777
Q ss_pred cCCCCCcchhhhHHHHHHhh--CH------HHHHHhhccchHHHHHHhhHhhh
Q 015383 188 LDPTKSLSQHYGAIQGLAAL--GP------SVVHLLILPNLELYLKFLEPEML 232 (408)
Q Consensus 188 lDp~k~l~t~YGAI~GL~aL--G~------~aVr~lllP~L~~y~~~Le~~l~ 232 (408)
.....-+...--|-+.|+.| |. ..++. .+|-|..+....+++..
T Consensus 209 ~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq-alpiL~KLiys~D~evl 260 (526)
T COG5064 209 LSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ-ALPILAKLIYSRDPEVL 260 (526)
T ss_pred HhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH-HHHHHHHHHhhcCHHHH
Confidence 75444467777888888888 43 46665 57777777666666544
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=25.92 E-value=3.2e+02 Score=32.04 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHH
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 226 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~ 226 (408)
.+..-.+|+-.|+..+.++..+|- +.|- -|++++-...|+....--.|.+...++--.=+. ++||+....+-
T Consensus 486 dn~deYVRnttarafavvasalgi--p~ll-----pfLkavc~SkkSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~i 557 (1172)
T KOG0213|consen 486 DNKDEYVRNTTARAFAVVASALGI--PALL-----PFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKI 557 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCc--HHHH-----HHHHHHhccccchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHH
Confidence 344567999999999999998884 4443 366776666767654444444444443333333 79999999999
Q ss_pred hhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhh
Q 015383 227 LEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 258 (408)
Q Consensus 227 Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~ 258 (408)
|+..+.++. ..+|..+.....+|-.|++-
T Consensus 558 i~~gl~De~---qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 558 IEHGLKDEQ---QKVRTITALALSALAEAATP 586 (1172)
T ss_pred HHHhhcccc---hhhhhHHHHHHHHHHHhcCC
Confidence 999997743 34566666666666665543
No 76
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.77 E-value=8.1e+02 Score=26.19 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=80.1
Q ss_pred hhhHHHhHHHHhhccC-----CHH---HH-HHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC--------
Q 015383 84 PYFTYFISEEVTRSLK-----NFS---LL-FALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-------- 146 (408)
Q Consensus 84 PYfv~FIse~V~~nl~-----nl~---~L-~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~-------- 146 (408)
|.|.||.-|.+..-++ +.+ .+ ..++-...-+++|.---.-||+-||+-.++.+--+..+....
T Consensus 86 P~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll 165 (435)
T PF03378_consen 86 PRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL 165 (435)
T ss_dssp HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT
T ss_pred cchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc
Confidence 5566666665444331 222 22 236667777888888888899999888777765433332211
Q ss_pred CCcchhHHHHH---HHHHHHHHHHhCCCCc--chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchH
Q 015383 147 SDNHWDLRNFV---ADLIASICTRFGHVYQ--NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLE 221 (408)
Q Consensus 147 ~~~hw~LRd~A---A~LL~~I~~kf~~sy~--~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~ 221 (408)
...-|+-|..- .++|..++++...... +--..|...+.|.+. .|. .-+||-- =|.++=...=-..+-|+++
T Consensus 166 ~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~--sk~-~D~~gF~-LL~~iv~~~p~~~l~~yl~ 241 (435)
T PF03378_consen 166 SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIA--SKA-NDHYGFD-LLESIVENLPPEALEPYLK 241 (435)
T ss_dssp SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT---TT-CHHHHHH-HHHHHHHHS-HHHHGGGHH
T ss_pred CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHC--CCC-cchHHHH-HHHHHHHHCCHHHHHHHHH
Confidence 35678866543 3455666667665442 334568888877774 332 5567542 2222111111123567778
Q ss_pred HHHHHhhHhhhhHhh
Q 015383 222 LYLKFLEPEMLLEKQ 236 (408)
Q Consensus 222 ~y~~~Le~~l~~~~~ 236 (408)
.++..+-..|...|+
T Consensus 242 ~I~~lll~RLq~skT 256 (435)
T PF03378_consen 242 QIFTLLLTRLQSSKT 256 (435)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhCCc
Confidence 888777777765443
No 77
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=25.76 E-value=87 Score=33.81 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=54.7
Q ss_pred cccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 015383 39 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 118 (408)
Q Consensus 39 kHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np 118 (408)
++.|++++|.+|++++.-|-+..+- - =|..+|-|||..|.+.-.....|+.-+..++.++-+.+.+.
T Consensus 51 R~~l~~~qq~~Fe~~~~~~d~~~~~------------i-PLtFmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~ 117 (450)
T KOG3547|consen 51 RFALTESQQETFEKFVMYCDSRLDF------------I-PLTFMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGT 117 (450)
T ss_pred HHhcCHHHHHHHHHHHHHHhccccc------------c-cchHhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCC
Confidence 5789999999999999988543221 1 37889999999999988777788888888888898888884
Q ss_pred C
Q 015383 119 H 119 (408)
Q Consensus 119 ~ 119 (408)
.
T Consensus 118 d 118 (450)
T KOG3547|consen 118 D 118 (450)
T ss_pred c
Confidence 4
No 78
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.75 E-value=3.5e+02 Score=31.29 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=9.3
Q ss_pred CcchhHHHHHHHHHHHH
Q 015383 148 DNHWDLRNFVADLIASI 164 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I 164 (408)
|.+|.+|..|+..|+.+
T Consensus 849 D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 849 DPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 44555555555555553
No 79
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=25.05 E-value=1.2e+03 Score=27.91 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCCccc-ccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 015383 108 MRVARSLLRNPHIHI-EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHA 186 (408)
Q Consensus 108 Lrmv~ALL~Np~L~I-epYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~ 186 (408)
+.++.-+++|.-=.| .-.+.+.+|+|..|.+...--.....-.-.||-+-..-+..+|..+...-++ ---|++.+. .
T Consensus 638 idvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~s-q 715 (1005)
T KOG2274|consen 638 IDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLS-Q 715 (1005)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHH-H
Confidence 333444444433333 2334456677777765431000000112357777777777888888877777 345666665 8
Q ss_pred hcCCCCCcchhhhHHHHHHhhCHHHHHH------hhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhh
Q 015383 187 FLDPTKSLSQHYGAIQGLAALGPSVVHL------LILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCV 260 (408)
Q Consensus 187 llDp~k~l~t~YGAI~GL~aLG~~aVr~------lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~ 260 (408)
|+||..+-.+-. . .|+-++.. -+=||+..++..+-. ++.+.|.-+|..-|+-+.+...
T Consensus 716 LLdp~~sds~a~--~-----VG~lV~tLit~a~~el~~n~d~IL~Avis---------rmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 716 LLDPETSDSAAA--F-----VGPLVLTLITHASSELGPNLDQILRAVIS---------RLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HcCCccchhHHH--H-----HhHHHHHHHHHHHHHhchhHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHHHh
Confidence 899988754321 1 13332221 144555555444333 3456677889999999999999
Q ss_pred hhhhhhh
Q 015383 261 YDRLKTV 267 (408)
Q Consensus 261 ~~~~~~~ 267 (408)
+..++.+
T Consensus 780 ~t~~~~~ 786 (1005)
T KOG2274|consen 780 HTDLDQL 786 (1005)
T ss_pred hCCHHHH
Confidence 9888887
No 80
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=24.81 E-value=3e+02 Score=23.80 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCC--CCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhh
Q 015383 179 VTRTLLHAFLDPT--KSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 256 (408)
Q Consensus 179 I~~tL~k~llDp~--k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~ 256 (408)
|+..+...+.|++ +|+..+==++.++..|=. .....+-..++.+..-|+..+.. +.-|.+|.+|...++..+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~-~~g~~i~~a~pQI~acL~saL~~-----~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK-LMGKHISSALPQIMACLQSALEI-----PELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCc-----hhHHHHHHHHHHHHHHhC
Confidence 3455666778877 677666666777666533 34455666677788888888853 347888999999998886
Q ss_pred hh
Q 015383 257 GL 258 (408)
Q Consensus 257 g~ 258 (408)
..
T Consensus 86 ~~ 87 (107)
T smart00802 86 KE 87 (107)
T ss_pred CH
Confidence 54
No 81
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=24.06 E-value=5.4e+02 Score=30.27 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=70.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHhcCCCCCcc---hhhhHHHHHHhhCHHHHHHhhccchHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLS---QHYGAIQGLAALGPSVVHLLILPNLEL 222 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~s--y~~L~pRI~~tL~k~llDp~k~l~---t~YGAI~GL~aLG~~aVr~lllP~L~~ 222 (408)
++.-.-|...+.++..|+.+.|.. ...|-.|+++-++-+|...+..-+ .-+|+|+ .+||.. +-|+++.
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~--~~lg~r-----~kpylpq 799 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV--NALGGR-----VKPYLPQ 799 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH--HHHhhc-----cccchHH
Confidence 455678999999999999987643 345678888888889986666554 3444443 123321 3689999
Q ss_pred HHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 223 YLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 223 y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
+...+--.|.+ +...+|..|....+.|-...-+|
T Consensus 800 i~stiL~rLnn---ksa~vRqqaadlis~la~Vlktc 833 (1172)
T KOG0213|consen 800 ICSTILWRLNN---KSAKVRQQAADLISSLAKVLKTC 833 (1172)
T ss_pred HHHHHHHHhcC---CChhHHHHHHHHHHHHHHHHHhc
Confidence 88888777754 45667887877777766666666
No 82
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=24.04 E-value=1.1e+02 Score=31.30 Aligned_cols=72 Identities=31% Similarity=0.395 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhhCH-HHHHHhh-----------------ccchHH--HHHHhhHhhhhHhhhhh
Q 015383 180 TRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLI-----------------LPNLEL--YLKFLEPEMLLEKQKNE 239 (408)
Q Consensus 180 ~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-~aVr~ll-----------------lP~L~~--y~~~Le~~l~~~~~~~~ 239 (408)
+-.+...++|+++++-..|-|.-.|...|. ++|..++ +.+|.. -...|...|.+ ...+.
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d-~~E~p 234 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD-ETEHP 234 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh-hhcch
Confidence 455677899999999999999999999965 5654432 222111 12234444444 34678
Q ss_pred hhHhHHHHHHHHH
Q 015383 240 MKRHEAWRVYGAL 252 (408)
Q Consensus 240 ~~r~ea~~V~gaL 252 (408)
++|+||..-.|++
T Consensus 235 MVRhEaAeALGaI 247 (289)
T KOG0567|consen 235 MVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877776
No 83
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=22.83 E-value=2.7e+02 Score=21.16 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHHHHHh-C--------CCCcchHHHHHHHHHHHh
Q 015383 150 HWDLRNFVADLIASICTRF-G--------HVYQNLQSRVTRTLLHAF 187 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf-~--------~sy~~L~pRI~~tL~k~l 187 (408)
+-.+|-+|+-+|...++++ . .--..-|..|-..+++.+
T Consensus 29 ~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 29 DPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999988886 5 444555666666655544
No 84
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.82 E-value=2.5e+02 Score=27.80 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=57.1
Q ss_pred HHHHHHh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCC------cchHHHHHH
Q 015383 109 RVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY------QNLQSRVTR 181 (408)
Q Consensus 109 rmv~ALL-~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy------~~L~pRI~~ 181 (408)
.+.+.+. +-..=.++.|++.++|++|+.+ +|..=..|-.+..+|.+++.+....- .|+..=+-+
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~ll---------DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~ 169 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLL---------DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFED 169 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHh---------cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHH
Confidence 3444455 4555578899999999999987 23345789999999999998765433 344444445
Q ss_pred HHHHHhc--------CCCC-CcchhhhHHHHHHh
Q 015383 182 TLLHAFL--------DPTK-SLSQHYGAIQGLAA 206 (408)
Q Consensus 182 tL~k~ll--------Dp~k-~l~t~YGAI~GL~a 206 (408)
.+.+.+. |..- -+..-|.++..|..
T Consensus 170 al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 170 ALFPCLYYLPPITPEDESLELLQAAYPALLSLLK 203 (282)
T ss_pred HHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 5555444 1111 13556777777744
No 85
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=22.77 E-value=8.3e+02 Score=24.93 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=70.0
Q ss_pred HhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHH----HHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCC--
Q 015383 71 LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFA----LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGN-- 144 (408)
Q Consensus 71 ~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~----LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~-- 144 (408)
.-++.... ..|++..-|..+|.....+-..+.+ .-||+.+-... .=..||++.+-+++.-++....+=
T Consensus 39 ~if~~~~~---~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~tK~~~~y~k~---~G~~YL~~~L~p~I~~ii~~~~~~Ei 112 (309)
T cd05136 39 HVLQSTGK---AKDFLTDLVMAEVDRCGENERLIFRENTLATKAIEEYLKL---VGQDYLQDTLGEFIRALYESEENCEV 112 (309)
T ss_pred HHHHhcCh---HHHHHHHHHHHHHHhccccHHHHHhcCcHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHcCCCCccc
Confidence 44444443 4455666667777765433333332 45666666653 238999999999999988754211
Q ss_pred CC--------CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcC
Q 015383 145 RF--------SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 189 (408)
Q Consensus 145 ~~--------~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llD 189 (408)
+| ..+.-.||.++..++..|+..-..-=.+++ .|.+.+.+.+-+
T Consensus 113 DP~k~~~~~l~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR-~i~~~lr~~~~~ 164 (309)
T cd05136 113 DPSKCSASELPDHQANLRMCCELAWCKIINSHCVFPAELR-EVFASWRERCED 164 (309)
T ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH-HHHHHHHHHHhh
Confidence 11 123457999999999999987654333444 777777776643
No 86
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=22.64 E-value=3.6e+02 Score=31.12 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=55.4
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCC-CCCcchhhhHHHHHHhh-CHHHHHHhhccchHHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDP-TKSLSQHYGAIQGLAAL-GPSVVHLLILPNLELY 223 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp-~k~l~t~YGAI~GL~aL-G~~aVr~lllP~L~~y 223 (408)
+...++|+.||..+..++.+||..+. ..+++..++....++ =+.-.|.+=++.-|... |.+.....++|-+...
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDL 604 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHh
Confidence 34678999999999999999996555 445666666766666 24456777777777754 9999988888866553
No 87
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=22.53 E-value=4.7e+02 Score=26.68 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=75.7
Q ss_pred CcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 015383 38 VKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN 117 (408)
Q Consensus 38 vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~N 117 (408)
.++.+.-|=-+|.-||..++.-.-+.+ +.++..++ ..+=||...+.+- .+-..=..+-.+.+.|...
T Consensus 26 ~~p~~~leR~~fL~kv~q~L~qhr~~E--~~Ivp~i~------~ni~y~L~~L~~~-----~~~~~~~~i~~~L~~l~~~ 92 (284)
T PF04793_consen 26 SHPLLALERGLFLLKVCQVLMQHRQSE--PFIVPKIR------SNIIYFLEELKEL-----SPGDCQEAIKEILDHLEEA 92 (284)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHH------HHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHhC
Confidence 344444455569999999887432221 12222221 2233444333322 2222222345556666889
Q ss_pred CCcccccchhhhHHHHHHHHhcc--cc--CCCCC-Ccchh------HHHHHHHHHHHHHHHhCCCCcchHH
Q 015383 118 PHIHIEPYLHQMMPSVITCLVSK--RL--GNRFS-DNHWD------LRNFVADLIASICTRFGHVYQNLQS 177 (408)
Q Consensus 118 p~L~IepYLHqLlPsvLTCll~k--~L--~~~~~-~~hw~------LRd~AA~LL~~I~~kf~~sy~~L~p 177 (408)
..++++.+|-..+|-++.|==-- +. +.... .-.|. +|+...+.+..+++.+..+.|+++.
T Consensus 93 ~d~~L~~~L~~~l~~ll~~~yP~~~~~~~~~~~~~~~~Wcl~~l~~vs~~~r~~v~~~l~~~~~smpS~~a 163 (284)
T PF04793_consen 93 GDSNLERELAKGLPKLLGCKYPHILNVWPVSPEQPYHEWCLHHLLGVSEEYRKKVSETLDDKHTSMPSFQA 163 (284)
T ss_pred CCcchHHHHHHHHHHHHhhhCCCcCCCCccCCCCChhhHHHhhHhhcCHHHHHHHHHHHhccccccHhHHH
Confidence 99999999999999988886432 22 11111 23455 6788899999999888888888864
No 88
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.50 E-value=9.1e+02 Score=25.33 Aligned_cols=83 Identities=8% Similarity=0.270 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCccc-ccchh-hhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHH
Q 015383 100 NFSLLFALMRVARSLLRNPHIHI-EPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS 177 (408)
Q Consensus 100 nl~~L~~LLrmv~ALL~Np~L~I-epYLH-qLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~p 177 (408)
.+.+|..+-.+...++.|+...- ..|+. +++-.++.+.-+ . .=+=|++.-.+|..|+.+|...-+.++.
T Consensus 103 ~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S----~-----D~rER~~lk~~l~~iy~k~~~~r~~Ir~ 173 (409)
T PF01603_consen 103 SWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDS----P-----DPRERDYLKTILHRIYGKFPNLRSFIRK 173 (409)
T ss_dssp THHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTS----S-----THHHHHHHHHHHHHHHHH-TTTHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCC----C-----CHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 57788888888889999987733 22332 333333333322 1 1255999999999999999988888898
Q ss_pred HHHHHHHHHhcCCC
Q 015383 178 RVTRTLLHAFLDPT 191 (408)
Q Consensus 178 RI~~tL~k~llDp~ 191 (408)
.|.+.|.+.+-+..
T Consensus 174 ~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 174 SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCcc
Confidence 89998887765433
No 89
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.29 E-value=4.9e+02 Score=25.76 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=42.4
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 142 LGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 142 L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
+|+...++....|..|=.+|+.++.+..... |...=++.+..-+.+.-....+.=+|+.||.+|
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L 67 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLAL 67 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 4444467788999999999999999987532 544444555555554444455555667776665
No 90
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=22.27 E-value=38 Score=32.54 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.3
Q ss_pred cCccchhHHHHHHhccccccccCCcccccc
Q 015383 378 AEGGHLLASLYELFGESMFSFTRKSELYFF 407 (408)
Q Consensus 378 ~~~g~ll~sl~elfGe~il~Fip~~E~s~f 407 (408)
.-.|=||+.+.-+||+.+|||+++.|+-||
T Consensus 35 G~~GFll~g~sSYl~~~Llpf~~~~~i~Fi 64 (188)
T PRK02542 35 GGIGFLLAGLSSYLGRNLLPVGDPSTLIFI 64 (188)
T ss_pred hhHHHHHhhhHHhhCcCccccCChhhCeEe
Confidence 456889999999999999999999987654
No 91
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.97 E-value=5.1e+02 Score=22.21 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHh-cCCCCCcchhhhHHHHHHhh---CHHHHHHhhccchHHHHHHhhHhhh
Q 015383 157 VADLIASICTRFGHVYQNLQSRVTRTLLHAF-LDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEML 232 (408)
Q Consensus 157 AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~l-lDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~ 232 (408)
...+|..|++..-++ .=..+|++.+.+.| .+..+.....|=|+.-|..| |++.+..-+.-++..+-..-+-.-.
T Consensus 20 ~~~~l~eIa~~t~~~--~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS--KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp -HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred CHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 567788888764332 56778999999999 66778888999999998877 8876665555454444333222111
Q ss_pred hH--hhhhhhhHhHHHHHHHHHH
Q 015383 233 LE--KQKNEMKRHEAWRVYGALQ 253 (408)
Q Consensus 233 ~~--~~~~~~~r~ea~~V~gaLl 253 (408)
++ +.....+|..|..+...|.
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHhC
Confidence 11 1222347778877776653
No 92
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=20.82 E-value=4e+02 Score=25.18 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhh----------ccCCHHHHHHHHHH
Q 015383 41 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTR----------SLKNFSLLFALMRV 110 (408)
Q Consensus 41 vLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~----------nl~nl~~L~~LLrm 110 (408)
.|+++....|+++.+.+...++-...++++.+... .+.+||+-.|+.+-+.. .+-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~----~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~ 193 (242)
T smart00147 118 KLPSKYKKLFEELEELLSPERNFKNYREALSSCNL----PPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEI 193 (242)
T ss_pred HCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHH
Confidence 47888899999988876432222223445554432 68999999888773321 12266666666665
Q ss_pred HHHHh
Q 015383 111 ARSLL 115 (408)
Q Consensus 111 v~ALL 115 (408)
++.+.
T Consensus 194 i~~~~ 198 (242)
T smart00147 194 LREIR 198 (242)
T ss_pred HHHHH
Confidence 55554
No 93
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=20.64 E-value=43 Score=32.04 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=26.5
Q ss_pred cCccchhHHHHHHhccccccccCCcccccc
Q 015383 378 AEGGHLLASLYELFGESMFSFTRKSELYFF 407 (408)
Q Consensus 378 ~~~g~ll~sl~elfGe~il~Fip~~E~s~f 407 (408)
.-.|=||+.+.-+||+.++||+++.|+-||
T Consensus 31 G~~GFll~g~SSYl~~~Llpf~~~~~i~Fi 60 (184)
T CHL00036 31 GSLGFLLVGISSYLGKNLIPFLPSQQILFF 60 (184)
T ss_pred hhHHHHHhhhHHhhCcCccccCChhhCeEe
Confidence 567999999999999999999999887654
No 94
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=20.48 E-value=1.1e+03 Score=25.42 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=38.9
Q ss_pred cchhh--hHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCCCC
Q 015383 124 PYLHQ--MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKS 193 (408)
Q Consensus 124 pYLHq--LlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp~k~ 193 (408)
.|+.. +++.++.++ .++.--+|--|..+|..++. ..+.+.-| +..+++.+...+.+....
T Consensus 196 ~~~~~sgll~~ll~eL---------~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKEL---------DSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHHHhccHHHHHHHHh---------cCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 34444 677777666 23556789999999999998 44434434 445777777766655443
No 95
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=20.45 E-value=64 Score=31.89 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCC----------cchhhhHHHHHH
Q 015383 156 FVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS----------LSQHYGAIQGLA 205 (408)
Q Consensus 156 ~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~----------l~t~YGAI~GL~ 205 (408)
.|+++|..=+-.|.-.|.++-.|-++|+.-+|-..... =..||||+.|+.
T Consensus 38 ~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~kswrLNERhYG~LqGln 97 (230)
T COG0588 38 AAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLN 97 (230)
T ss_pred HHHHHHHHcCCCcceeehHHHHHHHHHHHHHhhhhcccCcchhhHHHhhhhhhhhhhcCC
Confidence 46777777777788889999999999997776543221 147999999975
No 96
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.39 E-value=3.3e+02 Score=31.95 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=62.0
Q ss_pred CcchHHHHHHHHHHHhcCCCCCcchhh-----hHHHHHH-hhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHH
Q 015383 172 YQNLQSRVTRTLLHAFLDPTKSLSQHY-----GAIQGLA-ALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEA 245 (408)
Q Consensus 172 y~~L~pRI~~tL~k~llDp~k~l~t~Y-----GAI~GL~-aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea 245 (408)
-+.+-++++..+.++-.+|++|-.+|| |++.--. .-|+.+|-.+..--++.+...|...+.. ---=+
T Consensus 587 ~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E-------fiPYv 659 (960)
T KOG1992|consen 587 APELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE-------FIPYV 659 (960)
T ss_pred hhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 356677888888889999999999999 3333222 2365555554433333333333322221 11234
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccCCCccccccccCcc
Q 015383 246 WRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKG 283 (408)
Q Consensus 246 ~~V~gaLl~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
.++.+.|+...+.-+-|.....++.=...+.|+..|+|
T Consensus 660 fQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNi 697 (960)
T KOG1992|consen 660 FQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNI 697 (960)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCc
Confidence 67777787777664444444443333344789999886
No 97
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.24 E-value=2.2e+02 Score=32.17 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=60.4
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHhcCCCCCcchhhhHH
Q 015383 123 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF-GHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 201 (408)
Q Consensus 123 epYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf-~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI 201 (408)
+||-..|+-.+=.|+..+ .=|-.|-.+|++++++. ..-|.-++..++..|+|.|. .+.+....-.|+
T Consensus 65 ~P~~K~~~~~l~~~~~~~-----------~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~-~D~~~~~~~~al 132 (668)
T PF04388_consen 65 EPHDKHLFDKLNDYFVKP-----------SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQ-FDTSITVVSSAL 132 (668)
T ss_pred CccHHHHHHHHHHHHcCc-----------hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHh-hcccHHHHHHHH
Confidence 454455555444444332 23888899999999975 56677778999999999987 677888888999
Q ss_pred HHHHhhCHHHHHHhhccchHHHH
Q 015383 202 QGLAALGPSVVHLLILPNLELYL 224 (408)
Q Consensus 202 ~GL~aLG~~aVr~lllP~L~~y~ 224 (408)
..|..|=|.+-. .+-|+|+.++
T Consensus 133 ~~LimlLP~ip~-~l~~~L~~Lf 154 (668)
T PF04388_consen 133 LVLIMLLPHIPS-SLGPHLPDLF 154 (668)
T ss_pred HHHHHHhccccc-hhhHHHHHHH
Confidence 998876443322 2344444443
No 98
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=20.04 E-value=1.7e+02 Score=18.80 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcC
Q 015383 151 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 189 (408)
Q Consensus 151 w~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llD 189 (408)
|.+|..|+..|+.| ++ ++.+..|.+.+.|
T Consensus 1 ~~vR~~aa~aLg~~----~~------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQL----GD------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHc----CC------HhHHHHHHHHhcC
Confidence 78999999999988 22 3555556666554
Done!