Query 015383
Match_columns 408
No_of_seqs 137 out of 212
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 1.4E-61 4.9E-66 450.7 20.7 183 39-231 2-184 (196)
2 1ibr_B P95, importin beta-1 su 97.9 0.00042 1.4E-08 66.7 17.1 129 121-259 314-442 (462)
3 4fdd_A Transportin-1; heat rep 97.7 0.00077 2.6E-08 71.9 16.3 196 49-256 216-431 (852)
4 2bpt_A Importin beta-1 subunit 97.6 0.0014 4.6E-08 68.6 16.3 180 64-259 346-534 (861)
5 2bpt_A Importin beta-1 subunit 97.5 0.0026 8.9E-08 66.4 17.2 127 122-258 318-444 (861)
6 1qgr_A Protein (importin beta 97.4 0.0011 3.7E-08 69.4 13.3 180 64-258 343-541 (876)
7 1qgr_A Protein (importin beta 97.3 0.0062 2.1E-07 63.7 16.4 145 104-257 625-777 (876)
8 4fdd_A Transportin-1; heat rep 97.1 0.0079 2.7E-07 64.1 16.1 173 69-259 344-517 (852)
9 2qk2_A LP04448P; mini spindles 97.1 0.0092 3.1E-07 54.1 14.2 129 104-259 78-210 (242)
10 2qk1_A Protein STU2; STU2P, XM 97.1 0.017 5.8E-07 54.0 15.6 191 49-259 21-225 (249)
11 2qk2_A LP04448P; mini spindles 96.9 0.0077 2.6E-07 54.6 11.3 106 49-170 99-209 (242)
12 1u6g_C TIP120 protein, CAND1; 96.4 0.096 3.3E-06 58.1 17.8 120 102-231 492-619 (1230)
13 1ibr_B P95, importin beta-1 su 96.0 0.3 1E-05 46.7 16.9 150 49-209 173-357 (462)
14 1b3u_A Protein (protein phosph 96.0 0.18 6E-06 50.0 15.7 175 58-259 372-553 (588)
15 1u6g_C TIP120 protein, CAND1; 95.9 0.15 5.1E-06 56.6 16.6 190 50-259 8-209 (1230)
16 1b3u_A Protein (protein phosph 95.9 0.17 5.8E-06 50.1 15.3 96 148-257 175-274 (588)
17 2qk1_A Protein STU2; STU2P, XM 94.8 0.37 1.3E-05 44.8 12.7 147 48-207 60-218 (249)
18 2x1g_F Cadmus; transport prote 93.4 0.82 2.8E-05 49.4 13.6 148 70-233 445-595 (971)
19 2x19_B Importin-13; nuclear tr 92.6 0.86 2.9E-05 48.9 12.3 181 80-279 440-623 (963)
20 4db6_A Armadillo repeat protei 92.4 0.26 8.9E-06 42.5 6.6 141 49-207 13-165 (210)
21 4hxt_A De novo protein OR329; 92.0 0.67 2.3E-05 40.4 8.9 110 82-208 45-156 (252)
22 4db8_A Armadillo-repeat protei 91.9 0.37 1.3E-05 42.7 7.2 142 49-208 13-166 (252)
23 2x19_B Importin-13; nuclear tr 90.8 3.2 0.00011 44.6 14.3 87 106-208 512-602 (963)
24 1wa5_C Importin alpha RE-expor 90.6 2 6.7E-05 46.8 12.7 149 69-233 384-559 (960)
25 4ffb_C Protein STU2; tubulin f 90.6 1.8 6.2E-05 39.9 10.8 125 53-188 107-242 (278)
26 3ltj_A Alpharep-4; protein eng 90.6 5.3 0.00018 34.1 13.1 120 51-209 17-136 (201)
27 2jdq_A Importin alpha-1 subuni 89.9 3.4 0.00012 39.4 12.3 132 60-208 118-262 (450)
28 1oyz_A Hypothetical protein YI 89.8 7.9 0.00027 34.9 14.2 57 148-210 102-158 (280)
29 1wa5_B Importin alpha subunit; 89.7 4.5 0.00015 40.3 13.5 149 81-253 173-327 (530)
30 4hat_C Exportin-1; heat repeat 89.6 0.51 1.8E-05 52.9 7.2 157 68-232 435-599 (1023)
31 2x1g_F Cadmus; transport prote 89.6 2.7 9.2E-05 45.4 12.5 85 104-205 527-614 (971)
32 2of3_A ZYG-9; multifunctional 89.5 7.2 0.00025 37.4 14.3 152 87-265 89-247 (266)
33 2jdq_A Importin alpha-1 subuni 89.0 4.3 0.00015 38.6 12.3 139 53-208 154-304 (450)
34 1wa5_B Importin alpha subunit; 88.8 2 6.7E-05 43.0 10.2 111 81-208 215-327 (530)
35 4db8_A Armadillo-repeat protei 88.5 0.84 2.9E-05 40.3 6.5 109 82-207 97-207 (252)
36 2iw3_A Elongation factor 3A; a 87.9 20 0.00069 40.4 18.4 176 69-267 37-214 (986)
37 4hxt_A De novo protein OR329; 87.8 2.7 9.3E-05 36.4 9.3 140 51-208 47-198 (252)
38 2vgl_B AP-2 complex subunit be 87.8 1.9 6.5E-05 44.4 9.6 159 63-261 332-493 (591)
39 1wa5_C Importin alpha RE-expor 87.7 1.3 4.4E-05 48.2 8.6 104 101-207 306-432 (960)
40 4ffb_C Protein STU2; tubulin f 87.5 9.4 0.00032 35.1 13.2 146 99-260 67-218 (278)
41 2vgl_B AP-2 complex subunit be 87.1 2.9 0.0001 43.0 10.4 73 123-210 116-190 (591)
42 1w63_A Adapter-related protein 86.6 9.2 0.00031 39.7 14.0 139 49-211 351-492 (618)
43 3ltm_A Alpha-REP4; protein eng 86.3 13 0.00044 31.9 12.7 120 51-209 22-141 (211)
44 3ltm_A Alpha-REP4; protein eng 85.3 17 0.00058 31.1 14.8 122 50-210 52-173 (211)
45 1xqr_A HSPBP1 protein; armadil 84.8 21 0.00071 34.0 14.5 158 81-261 124-287 (296)
46 3ltj_A Alpharep-4; protein eng 83.5 20 0.00068 30.5 14.7 123 50-211 47-169 (201)
47 4b8j_A Importin subunit alpha- 83.4 8.8 0.0003 38.0 11.6 153 80-255 243-401 (528)
48 4b8j_A Importin subunit alpha- 81.8 12 0.0004 37.1 11.8 111 82-208 161-272 (528)
49 3m1i_C Exportin-1; heat repeat 81.5 27 0.00093 38.3 15.6 88 107-208 524-621 (1049)
50 1oyz_A Hypothetical protein YI 81.0 30 0.001 30.9 16.9 49 148-208 139-187 (280)
51 2vgl_A Adaptor protein complex 80.9 32 0.0011 35.9 15.2 77 123-210 141-217 (621)
52 3m1i_C Exportin-1; heat repeat 78.5 17 0.00059 39.9 12.7 156 68-232 435-599 (1049)
53 3gs3_A Symplekin, LD45768P; he 75.8 55 0.0019 31.0 14.3 100 150-255 66-174 (257)
54 1vsy_5 Proteasome activator BL 74.6 2.3 8E-05 47.7 4.6 97 100-207 815-922 (997)
55 3o2t_A Symplekin; heat repeat, 65.8 1.2E+02 0.0039 30.6 14.3 101 149-255 75-184 (386)
56 1w63_A Adapter-related protein 64.5 51 0.0017 34.1 11.9 70 125-209 139-208 (618)
57 2vgl_A Adaptor protein complex 63.6 68 0.0023 33.4 12.7 144 47-213 367-513 (621)
58 4hat_C Exportin-1; heat repeat 63.1 91 0.0031 34.9 14.2 106 107-227 524-644 (1023)
59 4db6_A Armadillo repeat protei 61.8 22 0.00075 30.1 7.2 139 52-208 58-208 (210)
60 3ibv_A Exportin-T; karyopherin 60.0 42 0.0014 37.3 10.8 96 81-188 486-588 (980)
61 2z6h_A Catenin beta-1, beta-ca 54.7 54 0.0018 33.6 9.9 124 52-190 18-152 (644)
62 1jdh_A Beta-catenin; beta-cate 54.5 53 0.0018 31.8 9.4 126 50-190 19-155 (529)
63 2z6g_A B-catenin; FULL-length, 52.4 39 0.0013 36.1 8.7 117 60-190 161-288 (780)
64 1te4_A Conserved protein MTH18 52.0 9.3 0.00032 30.9 3.0 50 148-209 53-102 (131)
65 3a6p_A Exportin-5; exportin-5, 50.1 1.5E+02 0.0053 33.4 13.4 89 75-169 345-455 (1204)
66 2z6g_A B-catenin; FULL-length, 50.0 18 0.00062 38.7 5.6 98 100-208 373-471 (780)
67 3a6p_A Exportin-5; exportin-5, 49.6 95 0.0032 35.1 11.6 160 104-279 510-682 (1204)
68 3u0r_A Apoptosis inhibitor 5; 46.3 2.8E+02 0.0097 29.0 14.9 256 34-306 162-472 (507)
69 3ul1_B Importin subunit alpha- 45.6 2.4E+02 0.0082 28.0 15.0 123 50-191 59-198 (510)
70 3opb_A SWI5-dependent HO expre 44.7 2.1E+02 0.0073 31.4 13.0 141 102-255 472-636 (778)
71 3tjz_B Coatomer subunit gamma; 39.4 50 0.0017 32.7 6.5 157 41-225 131-297 (355)
72 3oc3_A Helicase MOT1, MOT1; re 38.6 46 0.0016 36.2 6.4 89 131-233 220-310 (800)
73 4ady_A RPN2, 26S proteasome re 38.3 1E+02 0.0034 34.8 9.3 75 148-231 623-697 (963)
74 3ibv_A Exportin-T; karyopherin 36.5 1E+02 0.0034 34.3 9.0 144 81-232 432-588 (980)
75 1te4_A Conserved protein MTH18 32.3 58 0.002 26.1 4.8 120 47-206 11-130 (131)
76 4fqn_A Malcavernin; helical do 31.1 23 0.00079 29.5 2.1 62 344-405 13-82 (98)
77 2db0_A 253AA long hypothetical 30.2 3.4E+02 0.012 25.6 10.1 80 152-245 122-201 (253)
78 2z6h_A Catenin beta-1, beta-ca 29.7 2.9E+02 0.01 28.1 10.7 97 100-207 237-334 (644)
79 3now_A UNC-45 protein, SD10334 28.7 2.3E+02 0.008 31.0 10.2 152 80-252 494-650 (810)
80 3tpo_A Importin subunit alpha- 26.4 4.8E+02 0.017 25.8 14.0 139 50-207 78-236 (529)
81 1vdy_A Hypothetical protein (R 23.4 1.1E+02 0.0036 26.7 5.1 93 159-253 30-129 (140)
82 3gjx_A Exportin-1; transport, 23.2 3.4E+02 0.012 30.7 10.4 133 129-266 563-714 (1073)
83 2db0_A 253AA long hypothetical 22.2 91 0.0031 29.5 4.6 70 147-220 42-112 (253)
84 4ady_A RPN2, 26S proteasome re 21.9 3.4E+02 0.012 30.5 10.0 63 148-210 658-722 (963)
85 3te8_A Sensor histidine kinase 20.2 63 0.0022 27.1 2.9 67 31-99 9-87 (127)
86 2of3_A ZYG-9; multifunctional 20.2 4.8E+02 0.016 24.6 9.4 109 45-170 129-240 (266)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=1.4e-61 Score=450.69 Aligned_cols=183 Identities=37% Similarity=0.632 Sum_probs=177.8
Q ss_pred cccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 015383 39 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 118 (408)
Q Consensus 39 kHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np 118 (408)
||+||+|+|+||++||++|++ +.|++||++|++|||||||+|||++||+++|++|++|++.|.++|+|++||++||
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999997 4689999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhh
Q 015383 119 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 198 (408)
Q Consensus 119 ~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~Y 198 (408)
+++||||+|||+|++|||+|++++|++ +|||+||++|+.||++|+++|++|++||+++|.|+|+||++|+++||
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhCHHHHHHhhccchHHHHHHhhHhh
Q 015383 199 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 231 (408)
Q Consensus 199 GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 231 (408)
|||+||.+||++|||.+|+||++.|++.++..-
T Consensus 152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~~ 184 (196)
T 4atg_A 152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKKK 184 (196)
T ss_dssp HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999887643
No 2
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.90 E-value=0.00042 Score=66.67 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=94.8
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhH
Q 015383 121 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 200 (408)
Q Consensus 121 ~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGA 200 (408)
.+++|+..++|.++.++-... ....++.|..|..|+.+|..++..++. .+-+.++..+...+.|+ ....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d--~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~--~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQD--ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP--DWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--SSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcc--cccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCC--ChHHHHHH
Confidence 456788999998877764321 112457899999999999999999984 56677888887777654 57889999
Q ss_pred HHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 201 IQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 201 I~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
+.+|.+++...-...+-|+++.+...|-+.+.+ .+..+|..|-.+.+.+....+..
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcccc
Confidence 999999964222133456777777777777754 35678888888888888776653
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.67 E-value=0.00077 Score=71.91 Aligned_cols=196 Identities=13% Similarity=0.188 Sum_probs=121.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhhhcCCc--cccchh---hHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCc--c
Q 015383 49 YFDKIRELTVSRSNSTVFKQALLSLAMDSGL--HPLVPY---FTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--H 121 (408)
Q Consensus 49 Yf~kIteall~~~d~~~r~~AL~sL~tD~GL--~qLLPY---fv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L--~ 121 (408)
+...+.+.+ .+++++.|+.|+.+|..=... ..+.|| ++.++...... .+-..-...+....++..++.+ .
T Consensus 216 ~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 216 FIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHH
Confidence 334444433 345667787766655431110 112233 23333332222 2333334455566666665543 4
Q ss_pred cccchhhhHHHHHHHHhcc---------ccCCCCCC----cchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc
Q 015383 122 IEPYLHQMMPSVITCLVSK---------RLGNRFSD----NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 188 (408)
Q Consensus 122 IepYLHqLlPsvLTCll~k---------~L~~~~~~----~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~ll 188 (408)
+.||+..++|.++.++... .......+ +.|.+|..|+..|..++..++. .+-+.++..+...+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhc
Confidence 6899999999999887421 11011111 5899999999999999999873 467788888888876
Q ss_pred CCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhh
Q 015383 189 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 256 (408)
Q Consensus 189 Dp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~ 256 (408)
|+ ....+.+|+.+|..+....-+ .+-|+++.++..|-+.+.+ .+..+|..|-.+.|.+-..+
T Consensus 370 ~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 370 HH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp CS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHh
Confidence 65 588899999999999654433 3458888888888777754 34566776666666555443
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.58 E-value=0.0014 Score=68.58 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=125.8
Q ss_pred HHHHHHH---HhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCC-cccccchhhhHHHHHHHHhc
Q 015383 64 TVFKQAL---LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 139 (408)
Q Consensus 64 ~~r~~AL---~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~-L~IepYLHqLlPsvLTCll~ 139 (408)
..|+.|. ..|...-| ..++|.++.++.+.+.. .++..-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l-- 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG--
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc--
Confidence 4565544 44454444 56677777777766654 366666667788888887654 456788888888877765
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHH---HH
Q 015383 140 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV---HL 214 (408)
Q Consensus 140 k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy--~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV---r~ 214 (408)
.+.++.+|+.|+..++.++..++... ...-+.++..+.+.+.|+ ......|..+|..+....- ..
T Consensus 421 -------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 421 -------NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccch
Confidence 24589999999999999999876532 345677888888888764 5566777888877754422 24
Q ss_pred hhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 215 LILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 215 lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
.+-|+++.++..|-+.+... ..+...|..|.+..+.+....+.-
T Consensus 491 ~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred hhHHHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcchh
Confidence 46688888888887777531 123457888888888888877654
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.51 E-value=0.0026 Score=66.44 Aligned_cols=127 Identities=8% Similarity=0.087 Sum_probs=88.3
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHH
Q 015383 122 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 201 (408)
Q Consensus 122 IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI 201 (408)
+.+|+..++|.++.++-... ....++.|.+|..|+..|..++..++. .+-+.++..+.+.+.|+ ....+.+|+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~--~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~~a~ 390 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQN--EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITAD--NWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCC--ChhHHHHHH
Confidence 46778888998888764321 112356799999999999999999983 45678888888887654 477899999
Q ss_pred HHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhh
Q 015383 202 QGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 258 (408)
Q Consensus 202 ~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~ 258 (408)
.+|..+....-...+.|+++.++..|-..+.+ .+..+|..|..+.|.+...++.
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMND---QSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhh
Confidence 99999863221123456666676666666643 3556677776666666665543
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.44 E-value=0.0011 Score=69.45 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=122.8
Q ss_pred HHHHHHH---HhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCC-cccccchhhhHHHHHHHHhc
Q 015383 64 TVFKQAL---LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 139 (408)
Q Consensus 64 ~~r~~AL---~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~-L~IepYLHqLlPsvLTCll~ 139 (408)
..|+.|. ..|...-| ..++|.++.++.+.+.. .+...-...+..+.++..+.. -.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-- 417 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-- 417 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh--
Confidence 4566544 34443333 35567777666665543 366666667778888887655 346789999999999887
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHH-----
Q 015383 140 KRLGNRFSDNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV----- 212 (408)
Q Consensus 140 k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s--y~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV----- 212 (408)
.+.++.+|..|+..|+.++..++.. ....-+.++..+.+.+.|+ ....-.|..+|..+....-
T Consensus 418 -------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 418 -------KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp -------TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccc
Confidence 2567999999999999999987652 2334568888888888773 4446667777777765432
Q ss_pred --------HHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhh
Q 015383 213 --------HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 258 (408)
Q Consensus 213 --------r~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~ 258 (408)
...+.|+++.++..|...+......+...|..+..+.+.+..++|.
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 1247788888888887777542212345677777777888777764
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.26 E-value=0.0062 Score=63.73 Aligned_cols=145 Identities=11% Similarity=0.078 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383 104 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 183 (408)
Q Consensus 104 L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL 183 (408)
....++.+.+++.+-.-.+.||+.+++|.++.++-. .+++.+|..|..+++.|++.++......-+.++..+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN--------YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344666666666655556889999999999988732 147899999999999999999876555567889999
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhh--h------hhhhHhHHHHHHHHHHHh
Q 015383 184 LHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQ--K------NEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 184 ~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~--~------~~~~r~ea~~V~gaLl~A 255 (408)
.+.|.++.......--++.++..+... +..-+.|+++.++..|...+..... . ....|..+.+.++.++.+
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~ 775 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALA-IGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQG 775 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876443334444455554443221 1122556777777766665542110 0 113455555556665555
Q ss_pred hh
Q 015383 256 AG 257 (408)
Q Consensus 256 ~g 257 (408)
+|
T Consensus 776 ~~ 777 (876)
T 1qgr_A 776 LK 777 (876)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.15 E-value=0.0079 Score=64.14 Aligned_cols=173 Identities=18% Similarity=0.188 Sum_probs=121.3
Q ss_pred HHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCC
Q 015383 69 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD 148 (408)
Q Consensus 69 AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~ 148 (408)
+|..|....| ..++|.++.++.+.+.. .+...-...+..+.++..+..-.+++|+.+++|.++.++ .+
T Consensus 344 ~L~~la~~~~-~~~~~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---------~d 411 (852)
T 4fdd_A 344 ALDVLANVYR-DELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---------SD 411 (852)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------CC
Confidence 4455555444 46777777777766654 367776778888888988877788899999999998887 36
Q ss_pred cchhHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHh
Q 015383 149 NHWDLRNFVADLIASICTRFGH-VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 227 (408)
Q Consensus 149 ~hw~LRd~AA~LL~~I~~kf~~-sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 227 (408)
.++.+|..|+..++.++...+. ........++..|.+.+.|+ ....+..|..+|..+....- ..+.|+++.+...|
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~-~~l~~~l~~ll~~L 488 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEAC-TELVPYLAYILDTL 488 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhh-HhhHhHHHHHHHHH
Confidence 6899999999999999987643 23444668888888888765 45677788888887755433 34789998888888
Q ss_pred hHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 228 EPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 228 e~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
...+..... ....-+..+.+.+..++|..
T Consensus 489 ~~~l~~~~~---~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 489 VFAFSKYQH---KNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHCCH---HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhCh---HHHHHHHHHHHHHHHHhhhh
Confidence 777753211 11222344455555555543
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.13 E-value=0.0092 Score=54.06 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383 104 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 183 (408)
Q Consensus 104 L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL 183 (408)
+..+-.++..+-. .+++|+.+++|+++.++- +.+-.+|+.|...|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~-----~-~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS-----L-EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC-----H-HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC-----H-HHHHHHH
Confidence 4445555555422 568999999999998873 3345899999999999987643 2 4566777
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhh----CHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 184 LHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 184 ~k~llDp~k~l~t~YGAI~GL~aL----G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
...+.| ++....-+++..|..+ |++ ....++++.+...|...+.+ .+..+|..|..+.+.+..++|.-
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~---~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPT---ALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777764 3556777777766653 332 23456677777777777754 45678999999999999999863
No 10
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.017 Score=53.95 Aligned_cols=191 Identities=9% Similarity=0.054 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhhh-c----CCccc-cch--hhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCC-
Q 015383 49 YFDKIRELTVSRSNSTVFKQALLSLAM-D----SGLHP-LVP--YFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH- 119 (408)
Q Consensus 49 Yf~kIteall~~~d~~~r~~AL~sL~t-D----~GL~q-LLP--Yfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~- 119 (408)
|++.+. ..+-.-|++|+..|.. - +.+.. -.+ -++.-+...+..- .|......-++.+..|...=.
T Consensus 21 f~~~l~-----s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 21 FQERIT-----SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp HHHHHT-----CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhh-----cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhccc
Confidence 566542 2455568888876666 2 22321 112 2333333333211 244333334444444443222
Q ss_pred cccc-cchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCCCCCcchh
Q 015383 120 IHIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQH 197 (408)
Q Consensus 120 L~Ie-pYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp~k~l~t~ 197 (408)
=.++ +|...++|+++..+=.+ .=.+|+.|...+..||.........- -+.++..+...|.+ ++....
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dk---------k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~--k~~~vk 163 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEK---------KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH--KTPQIR 163 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCC---------CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC--SSHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC--CChHHH
Confidence 2367 99999999998877332 23789999999999999874322210 23477777777643 356888
Q ss_pred hhHHHHHHhhCHHHHH--Hhhccch-HHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 198 YGAIQGLAALGPSVVH--LLILPNL-ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 198 YGAI~GL~aLG~~aVr--~lllP~L-~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
.+++..|..+=..+-. ..+.|++ +.+...|...+.+ ++..+|..|..+.+++..++|.-
T Consensus 164 ~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHH
Confidence 9998888766433321 2355677 7777777777765 46779999999999999999964
No 11
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.88 E-value=0.0077 Score=54.57 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCchHHHHH---HHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcC--CCcccc
Q 015383 49 YFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN--PHIHIE 123 (408)
Q Consensus 49 Yf~kIteall~~~d~~~r~~---AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~N--p~L~Ie 123 (408)
++..|.+.+. +.+...|.. ||..+-...++..++|.+...+. + +|...-...+.++..++.+ |.-...
T Consensus 99 ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~----~--~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 99 CVPSLLEKFK-EKKPNVVTALREAIDAIYASTSLEAQQESIVESLS----N--KNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT----C--SCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----C--CChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 3444444433 344556664 55556566677777777655442 2 3555556678888887766 555678
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCC
Q 015383 124 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 170 (408)
Q Consensus 124 pYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~ 170 (408)
+|++.++|.++.|+ .|.+|.+|+.|...++.|++..|+
T Consensus 172 ~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 172 KLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 99999999999998 377899999999999999988775
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.38 E-value=0.096 Score=58.12 Aligned_cols=120 Identities=10% Similarity=0.107 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCC-------CCc
Q 015383 102 SLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-------VYQ 173 (408)
Q Consensus 102 ~~L~~LLrmv~ALL~Np~L-~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~-------sy~ 173 (408)
......+..+..++.+-.- .+.||+..++|.++.|+ .+..|.+|..|...++.+++.++. ...
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l---------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV---------GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4444556666666654322 36789999999999876 245689999999999999999886 333
Q ss_pred chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhh
Q 015383 174 NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 231 (408)
Q Consensus 174 ~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 231 (408)
...+.|+..+.+.+.+.+.....+-.|+.+|..+-..+= ..+.|+++.++..|.+.+
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~~~l~~L~~~l 619 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG-DNLGSDLPNTLQIFLERL 619 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG-GGCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-chhhhhHHHHHHHHHHHh
Confidence 445678888888885444555667777777776633211 113455555555554443
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.98 E-value=0.3 Score=46.71 Aligned_cols=150 Identities=9% Similarity=0.031 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCC-chHHHHHHHHhhhhc-------CCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCc
Q 015383 49 YFDKIRELTVSRS-NSTVFKQALLSLAMD-------SGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI 120 (408)
Q Consensus 49 Yf~kIteall~~~-d~~~r~~AL~sL~tD-------~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L 120 (408)
.+..+...+.+.+ +..+|.+|+.++..= ..-....+|++..+.+.+.. .+.......++....+..+-.=
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC--PDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443322 466788888776541 11111234444444433221 3455555677777778877666
Q ss_pred ccccchh-hhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHh------------------CCCCcchH---HH
Q 015383 121 HIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF------------------GHVYQNLQ---SR 178 (408)
Q Consensus 121 ~IepYLH-qLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf------------------~~sy~~L~---pR 178 (408)
.+.+|+. .++|.++.|+- +....+|..|...+..+|+.- .....-.+ +.
T Consensus 251 ~~~~~~~~~l~~~~~~~~~---------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMK---------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHH---------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc---------CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 7889999 99998887762 334589999999999998763 11112222 56
Q ss_pred HHHHHHHHhcCC-----CCCcchhhhHHHHHHhhCH
Q 015383 179 VTRTLLHAFLDP-----TKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 179 I~~tL~k~llDp-----~k~l~t~YGAI~GL~aLG~ 209 (408)
++..+.+.+.+. ........+|..+|..++.
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 777777777543 2345667788888877654
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.97 E-value=0.18 Score=49.95 Aligned_cols=175 Identities=11% Similarity=0.109 Sum_probs=93.4
Q ss_pred cCCCchHHHHHHHHhhh---hcCC----ccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhH
Q 015383 58 VSRSNSTVFKQALLSLA---MDSG----LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 130 (408)
Q Consensus 58 l~~~d~~~r~~AL~sL~---tD~G----L~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLl 130 (408)
+.++++.+|..|+..|. ..-| ...++|.+..++.+ .++..-...+..+..+... +.-+.+...++
T Consensus 372 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~ 443 (588)
T 1b3u_A 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED------AKWRVRLAIIEYMPLLAGQ--LGVEFFDEKLN 443 (588)
T ss_dssp HTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHH--HCGGGCCHHHH
T ss_pred hCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHHHH--cCHHHHHHHHH
Confidence 33445566766664433 2222 23455555543321 2343333333444333321 11122334567
Q ss_pred HHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH
Q 015383 131 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 210 (408)
Q Consensus 131 PsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 210 (408)
|.++.++ .+++|.+|+.|+..++.++..++.. ...+.++..+.+.+.|+ +...+-.++.++..++..
T Consensus 444 ~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 444 SLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHh
Confidence 7666654 2567899999999999999998863 23455666666555443 455566677776666443
Q ss_pred HHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 211 VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 211 aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
.-... +++.+...|...+.+ .+..+|..+.+..+.+...+|.-
T Consensus 511 ~~~~~---~~~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 511 CGQDI---TTKHMLPTVLRMAGD---PVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHH---HHHHTHHHHHHGGGC---SCHHHHHHHHHHHHHHGGGSCHH
T ss_pred cCHHH---HHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhchh
Confidence 22211 122233333333332 34567888888888887766543
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.94 E-value=0.15 Score=56.58 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhhcC---Ccc---ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccc
Q 015383 50 FDKIRELTVSRSNSTVFKQALLSLAMDS---GLH---PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE 123 (408)
Q Consensus 50 f~kIteall~~~d~~~r~~AL~sL~tD~---GL~---qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~Ie 123 (408)
+..+.+.+.+ .|+..|..|++.|.+.- ..+ ...++++..+.+.+.. .+...=..-++.+..|... + =+
T Consensus 8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~--~-~~ 81 (1230)
T 1u6g_C 8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSK--V-KE 81 (1230)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTT--S-CH
T ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh--C-CH
Confidence 3455555554 46667887877665431 111 1122333333333332 2333222234444455542 2 12
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC------CcchHHHHHHHHHHHhcCCCCCcchh
Q 015383 124 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV------YQNLQSRVTRTLLHAFLDPTKSLSQH 197 (408)
Q Consensus 124 pYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s------y~~L~pRI~~tL~k~llDp~k~l~t~ 197 (408)
+|+.++++.++.++. +++-.+|..|+..|+.|+..++.. .....+.++..|.+.+.| .......
T Consensus 82 ~~~~~i~~~Ll~~l~---------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 82 YQVETIVDTLCTNML---------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHHHHHHHHHHHHTT---------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHH
Confidence 688888888888752 233478999999999999988754 122466778888888765 3456788
Q ss_pred hhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 015383 198 YGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 259 (408)
Q Consensus 198 YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~ 259 (408)
.||+..|..+-... ...+.|+++.++..|-+.+.+ .+..+|..|-+..+.+....+.-
T Consensus 152 ~~al~~l~~~~~~~-~~~l~~~~~~ll~~l~~~L~~---~~~~vR~~a~~al~~l~~~~~~~ 209 (1230)
T 1u6g_C 152 LEALDIMADMLSRQ-GGLLVNFHPSILTCLLPQLTS---PRLAVRKRTIIALGHLVMSCGNI 209 (1230)
T ss_dssp HHHHHHHHHHHHHT-CSSCTTTHHHHHHHHGGGGGC---SSHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhcCHH
Confidence 89988888763221 124668888888888877764 23467778877777777665543
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.92 E-value=0.17 Score=50.07 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=62.2
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH----HHHHHhhccchHHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP----SVVHLLILPNLELY 223 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~----~aVr~lllP~L~~y 223 (408)
++++.+|..|+..|+.+++.++.. ...+.++..+.+.+.|++ ...+..|+.+|..++. +.....++|.+..+
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQ--DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSC--HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567899999999999999887642 234566777777776664 4667788888877644 33444455544433
Q ss_pred HHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhh
Q 015383 224 LKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 257 (408)
Q Consensus 224 ~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g 257 (408)
. . ..+..+|..|-+..|.+...+|
T Consensus 251 ~-------~---d~~~~vR~~a~~~l~~l~~~~~ 274 (588)
T 1b3u_A 251 A-------E---DKSWRVRYMVADKFTELQKAVG 274 (588)
T ss_dssp H-------T---CSSHHHHHHHHHTHHHHHHHHC
T ss_pred c-------c---CCCHHHHHHHHHHHHHHHHHhC
Confidence 2 1 1234466677677776666543
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.37 Score=44.81 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHhhhhc-CCcc--ccc-hhhHHHhHHHHhhccCC--HHHHHHHHHHHHHHhc--CCC
Q 015383 48 LYFDKIRELTVSRSNSTVFKQALLSLAMD-SGLH--PLV-PYFTYFISEEVTRSLKN--FSLLFALMRVARSLLR--NPH 119 (408)
Q Consensus 48 lYf~kIteall~~~d~~~r~~AL~sL~tD-~GL~--qLL-PYfv~FIse~V~~nl~n--l~~L~~LLrmv~ALL~--Np~ 119 (408)
..++.+...+..+.+...+..|+..|..= .|++ .+- ||....+-.-+ ..+++ -.+-......+.+++. ||
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll-~~l~dkk~~V~~aa~~al~~i~~~~~~- 137 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLL-DRTKEKKPSVIEAIRKALLTICKYYDP- 137 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHH-HGGGCCCHHHHHHHHHHHHHHHHHSCT-
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHccc-
Confidence 34556666553345566676665544331 2333 333 55555444222 22232 3333445555566665 55
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC---CcchH-HHHHHHHHHHhcCCCCCcc
Q 015383 120 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV---YQNLQ-SRVTRTLLHAFLDPTKSLS 195 (408)
Q Consensus 120 L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s---y~~L~-pRI~~tL~k~llDp~k~l~ 195 (408)
....+|+..+++.++.++= ...|.+|..+..+|+.++...+.. +...- +.|+..+.+.+-|++. .
T Consensus 138 ~~~~~~l~~ll~~l~~~l~---------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~--~ 206 (249)
T 2qk1_A 138 LASSGRNEDMLKDILEHMK---------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP--A 206 (249)
T ss_dssp TCTTCTTHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH--H
T ss_pred cccCCcHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH--H
Confidence 3355679999998887762 225899999999999999998752 22233 6778888888877643 3
Q ss_pred hhhhHHHHHHhh
Q 015383 196 QHYGAIQGLAAL 207 (408)
Q Consensus 196 t~YGAI~GL~aL 207 (408)
.+=.|+-+|..+
T Consensus 207 VR~aA~~~l~~i 218 (249)
T 2qk1_A 207 IRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555553
No 18
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.36 E-value=0.82 Score=49.42 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=93.8
Q ss_pred HHhhhhcCCccccchhhHHHhHHHHhhc---cCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC
Q 015383 70 LLSLAMDSGLHPLVPYFTYFISEEVTRS---LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF 146 (408)
Q Consensus 70 L~sL~tD~GL~qLLPYfv~FIse~V~~n---l~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~ 146 (408)
|..+..--| ..++|.+..++.+.+... -.++......+..+.++.....-...+++.++++ ++..+ ..
T Consensus 445 l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~-- 515 (971)
T 2x1g_F 445 FMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PY-- 515 (971)
T ss_dssp HHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CT--
T ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Cc--
Confidence 333443333 567788888887776541 1477788888888888887766666677777777 33332 11
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHH
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 226 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~ 226 (408)
.+.|=.+|.-|..+++.++.-+.. .+..-+.++..+.+.+ | . ...--|..+|..|- +..+..+.|+++.+...
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~--~v~~~A~~al~~l~-~~~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--S--SMSAQATLGLKELC-RDCQLQLKPYADPLLNA 588 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--S--SCHHHHHHHHHHHH-HHCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--h--HHHHHHHHHHHHHH-HHHHHhccccHHHHHHH
Confidence 134678999999999999987764 3466677888888887 5 2 22333444444554 44566688999999988
Q ss_pred hhHhhhh
Q 015383 227 LEPEMLL 233 (408)
Q Consensus 227 Le~~l~~ 233 (408)
|...+..
T Consensus 589 l~~~l~~ 595 (971)
T 2x1g_F 589 CHASLNT 595 (971)
T ss_dssp HHHHHHS
T ss_pred HHHHHcC
Confidence 8877753
No 19
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.55 E-value=0.86 Score=48.94 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=110.3
Q ss_pred cccchhhHHHhHHHHhh--ccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHH
Q 015383 80 HPLVPYFTYFISEEVTR--SLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 157 (408)
Q Consensus 80 ~qLLPYfv~FIse~V~~--nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~A 157 (408)
..+++.+..++.+.+.. +-.++......+..+.++.....-...+++.++++ .+. .++. +|-.+|..+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~--~l~~----~~~~vr~~~ 509 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIP--RISI----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGG--GSCC----CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHH--hCCC----CcHHHHHHH
Confidence 34667777777776632 12478888888888888888766555677666666 222 3322 477899999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhh
Q 015383 158 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQK 237 (408)
Q Consensus 158 A~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~ 237 (408)
..+++..++-+.. .+..-+.++..+.+.+.| ...+--|...|..|-.+ .+..+.|+++.+...|...+.... .
T Consensus 510 ~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~~-~ 582 (963)
T 2x19_B 510 MFTIGALSEWLAD-HPVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLMKQI-H 582 (963)
T ss_dssp HHHHHHTHHHHHH-CHHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhccCC-C
Confidence 9999999876553 234555677777777755 34445566777777643 456688999999998887775311 1
Q ss_pred hhhhHhHHHHHHHHHHHhhhhhhhhhhhhh-ccCCCccccccc
Q 015383 238 NEMKRHEAWRVYGALQCAAGLCVYDRLKTV-LLRPPKQSRWES 279 (408)
Q Consensus 238 ~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~-~~~~~~~~~~~~ 279 (408)
+...|..+-...+.++.+++ -.+..++. -..+|....|..
T Consensus 583 ~~~~~~~~~eai~~i~~~~~--~~~~~~~~~~l~~~l~~~l~~ 623 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSALQ--VEEILKNLHSLISPYIQQLEK 623 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 12233333344444444443 12222222 223445566653
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.38 E-value=0.26 Score=42.53 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhhhcC----Ccc------ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhc-C
Q 015383 49 YFDKIRELTVSRSNSTVFKQALLSLAMDS----GLH------PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-N 117 (408)
Q Consensus 49 Yf~kIteall~~~d~~~r~~AL~sL~tD~----GL~------qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~-N 117 (408)
+|..+...+. .+|++.+..|+..|..=. ... ..+|.++.++.+ .+.......+..+..|.. |
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCC
Confidence 4555555544 455666666554443322 111 356666666543 244555556666666764 3
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCcch
Q 015383 118 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQ 196 (408)
Q Consensus 118 p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy-~~L~pRI~~tL~k~llDp~k~l~t 196 (408)
+...-.-.-+..+|.++.++- +.+..+|..|+..|..|+....... .-+...++..|.+.+.++ +...
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v 154 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHH
Confidence 332222222357788888762 2347999999999999985311100 112344667777777654 4566
Q ss_pred hhhHHHHHHhh
Q 015383 197 HYGAIQGLAAL 207 (408)
Q Consensus 197 ~YGAI~GL~aL 207 (408)
..-|+.+|..+
T Consensus 155 ~~~a~~aL~~l 165 (210)
T 4db6_A 155 LQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777766
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.00 E-value=0.67 Score=40.42 Aligned_cols=110 Identities=9% Similarity=0.040 Sum_probs=66.8
Q ss_pred cchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcC-CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Q 015383 82 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN-PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 160 (408)
Q Consensus 82 LLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~N-p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~L 160 (408)
.+|.++.++.+ .+.......+.....|..+ +...-.-.-+..+|.++.++- +++..+|..|+..
T Consensus 45 ~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~~~ 109 (252)
T 4hxt_A 45 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 109 (252)
T ss_dssp HHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 46666665543 2455555667777777765 332222222346777776652 2357999999999
Q ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC
Q 015383 161 IASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208 (408)
Q Consensus 161 L~~I~~kf~~s-y~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 208 (408)
|..++...... ..-+...++..+.+.+.+++ ......|+.+|..+.
T Consensus 110 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 110 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIA 156 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHH
Confidence 99998532110 01112245677777776544 667888888888884
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.93 E-value=0.37 Score=42.67 Aligned_cols=142 Identities=9% Similarity=0.067 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhhh-----cCCcc-----ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhc-C
Q 015383 49 YFDKIRELTVSRSNSTVFKQALLSLAM-----DSGLH-----PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-N 117 (408)
Q Consensus 49 Yf~kIteall~~~d~~~r~~AL~sL~t-----D~GL~-----qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~-N 117 (408)
+|+.+++.+.++ +++.+..|+..|+. ++... ..+|.++.++.. .+.......+..+..|.. |
T Consensus 13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGG 85 (252)
T ss_dssp SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCC
Confidence 466666666654 44456666655532 22221 245666655532 234444556666666665 3
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHhcCCCCCcch
Q 015383 118 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQ 196 (408)
Q Consensus 118 p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s-y~~L~pRI~~tL~k~llDp~k~l~t 196 (408)
+...-.-.-...+|.++.++- ++++.+|+.|+..|+.|+...... -.-+...++..|.+.+.++ +...
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v 154 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHH
Confidence 332211111236777766652 235799999999999997543221 1122344677888888665 5567
Q ss_pred hhhHHHHHHhhC
Q 015383 197 HYGAIQGLAALG 208 (408)
Q Consensus 197 ~YGAI~GL~aLG 208 (408)
..-|+.+|..+.
T Consensus 155 ~~~a~~~L~~l~ 166 (252)
T 4db8_A 155 LQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 788888888884
No 23
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.80 E-value=3.2 Score=44.56 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 015383 106 ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLH 185 (408)
Q Consensus 106 ~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k 185 (408)
.+-++.+-+-.|+ .|+..+++.++.++- + -.+|..|+..+..+|+.++.....--+.|+..|.+
T Consensus 512 ~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~-----~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 512 TIGALSEWLADHP-----VMINSVLPLVLHALG-----N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp HHHHTHHHHHHCH-----HHHTTTHHHHHHHTT-----C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCH-----HHHHHHHHHHHHHhC-----C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555454443 577777777777651 1 27899999999999999876554456778888888
Q ss_pred HhcCCCCC---cchhhhHHHHHHh-hC
Q 015383 186 AFLDPTKS---LSQHYGAIQGLAA-LG 208 (408)
Q Consensus 186 ~llDp~k~---l~t~YGAI~GL~a-LG 208 (408)
.+..+.-. ....|.|+..+.. .|
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 77653322 3344666666543 45
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.60 E-value=2 Score=46.77 Aligned_cols=149 Identities=14% Similarity=0.059 Sum_probs=95.8
Q ss_pred HHHhhhhcCCccccchhhHHHhHHHHhh----ccCCHHHHHHHHHHHHHHhcC------------CCcccccchhh-hHH
Q 015383 69 ALLSLAMDSGLHPLVPYFTYFISEEVTR----SLKNFSLLFALMRVARSLLRN------------PHIHIEPYLHQ-MMP 131 (408)
Q Consensus 69 AL~sL~tD~GL~qLLPYfv~FIse~V~~----nl~nl~~L~~LLrmv~ALL~N------------p~L~IepYLHq-LlP 131 (408)
.|..|...-+ ..++|-+..|+.+-+.. ...|+......+.++.|+..+ +.+.+++++.+ ++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 3345555544 56677777777665542 124677777788888888654 22245555432 333
Q ss_pred HHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH-
Q 015383 132 SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS- 210 (408)
Q Consensus 132 svLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~- 210 (408)
-+ - . +.+.|=.+|..|..+++.++..+. +..-..++..+.+.|.|+ +...+--|..+|..|-..
T Consensus 463 ~l----~-----~-~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 463 DL----T-----S-NNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH----H-----C-SSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCB
T ss_pred Hh----c-----C-CCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcc
Confidence 22 1 1 113477899999999999887652 455777888888888876 455666777777775431
Q ss_pred ---------HHHHhhccchHHHHHHhhHhhhh
Q 015383 211 ---------VVHLLILPNLELYLKFLEPEMLL 233 (408)
Q Consensus 211 ---------aVr~lllP~L~~y~~~Le~~l~~ 233 (408)
.-+..+.|+++.++..|-..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 12566889999999988877653
No 25
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.60 E-value=1.8 Score=39.94 Aligned_cols=125 Identities=16% Similarity=0.219 Sum_probs=70.9
Q ss_pred HHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcC---CCcccccchhhh
Q 015383 53 IRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN---PHIHIEPYLHQM 129 (408)
Q Consensus 53 Iteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~N---p~L~IepYLHqL 129 (408)
+++-+++......+..|++.|-.=-........++..+.....+ +|.......+..+..++.+ ..+...+.+-.+
T Consensus 107 lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~--Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i 184 (278)
T 4ffb_C 107 LVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEK--KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPEL 184 (278)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGC--SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHH
Confidence 33334444445556666554432211111222333333333333 5666666666666666665 445566677777
Q ss_pred HHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC--------CcchHHHHHHHHHHHhc
Q 015383 130 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV--------YQNLQSRVTRTLLHAFL 188 (408)
Q Consensus 130 lPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s--------y~~L~pRI~~tL~k~ll 188 (408)
++.+..|+= +..=.+|+-|.+++..+++..|.. ..+|+|-..+.+-+.|-
T Consensus 185 ~~~l~k~l~---------d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 185 LKHVPQLAG---------HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp GGGHHHHHT---------CSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred HHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 777777762 223489999999999999988743 25677777777777663
No 26
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.57 E-value=5.3 Score=34.14 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=56.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhH
Q 015383 51 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 130 (408)
Q Consensus 51 ~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLl 130 (408)
..+.+.+- ..+...|..|+..|..-.. ...+|.++..+.+ .+...-. ..+++|-.-.. ...+
T Consensus 17 ~~~i~~L~-~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~---~a~~~L~~~~~-------~~~~ 78 (201)
T 3ltj_A 17 EMYIKNLQ-DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRR---AAADALGQIGD-------ERAV 78 (201)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SSHHHHH---HHHHHHHHHCC-------GGGH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcC------CCHHHHH---HHHHHHHhhCC-------HHHH
Confidence 34444443 4566677777776665332 3445555555432 1222211 12222221110 1334
Q ss_pred HHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH
Q 015383 131 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 131 PsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 209 (408)
|.++.++ .++++.+|..|+..|+.+.. +.....|.+.+.|+ .......|+.+|..+|.
T Consensus 79 ~~L~~~l---------~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 79 EPLIKAL---------KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHT---------TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH---------cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC
Confidence 5444433 13456677777777666521 12334444444433 34556666666666654
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=89.86 E-value=3.4 Score=39.35 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=80.2
Q ss_pred CCchHHHHHHHHh---hhhcCC-c------cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC--Ccccccchh
Q 015383 60 RSNSTVFKQALLS---LAMDSG-L------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP--HIHIEPYLH 127 (408)
Q Consensus 60 ~~d~~~r~~AL~s---L~tD~G-L------~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np--~L~IepYLH 127 (408)
.+++..|..|+.. |..+.. . ...+|.++.++.+ -.+.......+.....|..+. ... ..++.
T Consensus 118 ~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~ 191 (450)
T 2jdq_A 118 SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVS 191 (450)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTG
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHH
Confidence 3456667665544 444321 0 2467777777652 124556666777888888664 333 34458
Q ss_pred hhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh
Q 015383 128 QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 206 (408)
Q Consensus 128 qLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~-~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~a 206 (408)
.++|.++.++- +++..+|..|+..|+.++........ -....++..|.+.+.++ ......-|+..|..
T Consensus 192 ~~l~~L~~~l~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 192 PCLNVLSWLLF---------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGN 260 (450)
T ss_dssp GGHHHHHHHTT---------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHH
Confidence 88998888762 23468999999999999853211000 11223566677776543 45667788888887
Q ss_pred hC
Q 015383 207 LG 208 (408)
Q Consensus 207 LG 208 (408)
+.
T Consensus 261 l~ 262 (450)
T 2jdq_A 261 IV 262 (450)
T ss_dssp HT
T ss_pred Hh
Confidence 74
No 28
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.83 E-value=7.9 Score=34.88 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=34.2
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 210 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 210 (408)
+.++.+|..|+..|+.++... +...+.++..|.+.+.|+ .....+.|+.+|..+|..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~----~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKN----PIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDK 158 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHHhccC----CcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCH
Confidence 345677777777777776543 223455666666666554 355667777777777653
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=89.71 E-value=4.5 Score=40.33 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=82.5
Q ss_pred ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCC-cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 81 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~-L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
..+|.|+..+.+ .+.......+..+..|..+.. ..-...-+..+|+++.++-. ....+|..|+.
T Consensus 173 g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~~ 237 (530)
T 1wa5_B 173 DAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTATW 237 (530)
T ss_dssp TCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHHH
T ss_pred CCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHHH
Confidence 567777777764 244444555555656655421 11111123567777776622 35689999999
Q ss_pred HHHHHHHHh-CCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC---HHHHHHhhc-cchHHHHHHhhHhhhhH
Q 015383 160 LIASICTRF-GHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG---PSVVHLLIL-PNLELYLKFLEPEMLLE 234 (408)
Q Consensus 160 LL~~I~~kf-~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG---~~aVr~lll-P~L~~y~~~Le~~l~~~ 234 (408)
.|+.||+.. ...-......++..|.+.+.+++ .....-|+.+|..|. ++.++.++- .-++.+...|..
T Consensus 238 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~----- 310 (530)
T 1wa5_B 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH----- 310 (530)
T ss_dssp HHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----
T ss_pred HHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----
Confidence 999999753 22122234456777778776553 566677777777763 333443321 333333333321
Q ss_pred hhhhhhhHhHHHHHHHHHH
Q 015383 235 KQKNEMKRHEAWRVYGALQ 253 (408)
Q Consensus 235 ~~~~~~~r~ea~~V~gaLl 253 (408)
.+...|..|..+.+.|.
T Consensus 311 --~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 311 --ESTLVQTPALRAVGNIV 327 (530)
T ss_dssp --SCHHHHHHHHHHHHHHT
T ss_pred --CChhhHHHHHHHHHHHH
Confidence 23345555555555544
No 30
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.56 E-value=0.51 Score=52.87 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=108.0
Q ss_pred HHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcc-cccchhhhHHHHHHHHhccccCCCC
Q 015383 68 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH-IEPYLHQMMPSVITCLVSKRLGNRF 146 (408)
Q Consensus 68 ~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~-IepYLHqLlPsvLTCll~k~L~~~~ 146 (408)
++|..+..--+- .+++.+...+.+.+...-.++..+...+-...|+...+.-. ..+++++++|.++.++=.++.
T Consensus 435 d~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~---- 509 (1023)
T 4hat_C 435 EVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG---- 509 (1023)
T ss_dssp HHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS----
T ss_pred HHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc----
Confidence 445444332222 46666666666666553357999999999999999887764 679999999988886543321
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhh-------ccc
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------LPN 219 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~ll-------lP~ 219 (408)
.+++-.+|+-++-+|+++++=+.. .+..-+.+++.+.+.+.|++. ...-=|..+|..+..+.-+.++ -|+
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~--~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~ 586 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHE--GVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 244557889999999998886643 455667777788888866543 2334477788888877666654 478
Q ss_pred hHHHHHHhhHhhh
Q 015383 220 LELYLKFLEPEML 232 (408)
Q Consensus 220 L~~y~~~Le~~l~ 232 (408)
+..+...+.....
T Consensus 587 ~~~il~~l~~~~~ 599 (1023)
T 4hat_C 587 IQTIIRDIQKTTA 599 (1023)
T ss_dssp HHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776654
No 31
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.55 E-value=2.7 Score=45.41 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383 104 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 183 (408)
Q Consensus 104 L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL 183 (408)
+..+-++.+.+-.|+ .|+..++|.++.++ . . .++..|+..+..+|+.++..-..--+.|+..|
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~----~-------~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N----S-------SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H----S-------SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C----h-------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344666666666665 68888889888887 2 1 46999999999999987654333345677777
Q ss_pred HHHhcCCCCC---cchhhhHHHHHH
Q 015383 184 LHAFLDPTKS---LSQHYGAIQGLA 205 (408)
Q Consensus 184 ~k~llDp~k~---l~t~YGAI~GL~ 205 (408)
.+.+..+.-. ....|.|+.-+.
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7777754332 334455555543
No 32
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.52 E-value=7.2 Score=37.37 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=94.4
Q ss_pred HHHhHHHHhhccCCHHHHHHHHHHHHHHhc---CCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHH
Q 015383 87 TYFISEEVTRSLKNFSLLFALMRVARSLLR---NPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIA 162 (408)
Q Consensus 87 v~FIse~V~~nl~nl~~L~~LLrmv~ALL~---Np~L~IepY-LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~ 162 (408)
+.|++-.+.. +|...+...+.++.+++. -..-.+..| .-.++|. ++.|- | +..=.+|+.+-.++.
T Consensus 89 ~kw~~lr~~d--~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~----LveKl-G----d~k~~vR~~~r~il~ 157 (266)
T 2of3_A 89 LKWCTLRFFE--TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY----LLLKT-G----EAKDNMRTSVRDIVN 157 (266)
T ss_dssp HHHHHHHTTS--CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH----HHHGG-G----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH----HHHHh-C----CChHHHHHHHHHHHH
Confidence 4444433333 365565555555555542 233445555 3555664 44443 2 333478999999999
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHH---HHhhHhhhhHhhhhh
Q 015383 163 SICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYL---KFLEPEMLLEKQKNE 239 (408)
Q Consensus 163 ~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~---~~Le~~l~~~~~~~~ 239 (408)
.++.-|+. .++...+...|. .|+.-+.-|.+..+..+ +...=++ -..++ ..|-..+. ..|.
T Consensus 158 ~l~~v~~~------~~v~~~l~~g~k--sKN~R~R~e~l~~l~~l----i~~~G~~-~~~~l~~~~~ia~ll~---D~d~ 221 (266)
T 2of3_A 158 VLSDVVGP------LKMTPMLLDALK--SKNARQRSECLLVIEYY----ITNAGIS-PLKSLSVEKTVAPFVG---DKDV 221 (266)
T ss_dssp HHHHHHCH------HHHHHHHHHGGG--CSCHHHHHHHHHHHHHH----HHHHCSG-GGGGGCHHHHHGGGGG---CSSH
T ss_pred HHHHHCCH------HHHHHHHHHHHc--cCCHHHHHHHHHHHHHH----HHhcCCC-ccccccchHHHHHHHc---CCCH
Confidence 99988764 468888888884 67788888877766655 1111111 12233 33333333 3577
Q ss_pred hhHhHHHHHHHHHHHhhhhhhhhhhh
Q 015383 240 MKRHEAWRVYGALQCAAGLCVYDRLK 265 (408)
Q Consensus 240 ~~r~ea~~V~gaLl~A~g~~~~~~~~ 265 (408)
.+|..|..+...+..-+|.-++..++
T Consensus 222 ~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 222 NVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 89999999999999999998887765
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=88.98 E-value=4.3 Score=38.58 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=81.3
Q ss_pred HHHHhcCCCchHHHHHHH---Hhhhhc--CC-----ccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCccc
Q 015383 53 IRELTVSRSNSTVFKQAL---LSLAMD--SG-----LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHI 122 (408)
Q Consensus 53 Iteall~~~d~~~r~~AL---~sL~tD--~G-----L~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~I 122 (408)
+.+.+.+..+...|..|+ ..|..+ +. +..++|.++..+.+ .|..........+..|..+..-..
T Consensus 154 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~ 227 (450)
T 2jdq_A 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDKI 227 (450)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHHH
Confidence 333333224556666544 455543 22 35677777776642 345555556666666766542212
Q ss_pred ccc-hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCcchhhhH
Q 015383 123 EPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGA 200 (408)
Q Consensus 123 epY-LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~-~L~pRI~~tL~k~llDp~k~l~t~YGA 200 (408)
+.. -..++|.++.++- +..|.+|..|+..|+.|+........ -+...++..+.+.+.++ ....+.-|
T Consensus 228 ~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a 296 (450)
T 2jdq_A 228 QAVIDAGVCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEA 296 (450)
T ss_dssp HHHHHTTTHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHH
Confidence 111 1346777777652 34689999999999999864221100 11224677777877765 45667788
Q ss_pred HHHHHhhC
Q 015383 201 IQGLAALG 208 (408)
Q Consensus 201 I~GL~aLG 208 (408)
+..|..+.
T Consensus 297 ~~~L~~l~ 304 (450)
T 2jdq_A 297 CWTISNIT 304 (450)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88888874
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=88.82 E-value=2 Score=42.96 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=71.2
Q ss_pred ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC-CcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 81 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP-HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np-~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
..+|.++..+.+ .+.......+..+..|..+. ...-..+...++|.++.++- ++...+|..|+.
T Consensus 215 ~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~ 279 (530)
T 1wa5_B 215 NAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDACW 279 (530)
T ss_dssp TCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHHH
T ss_pred CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHHH
Confidence 467777766643 45666677788888888764 22234556788888887652 234689999999
Q ss_pred HHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC
Q 015383 160 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208 (408)
Q Consensus 160 LL~~I~~kf~~sy~-~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 208 (408)
.|+.|+........ -+...++..|.+.+.++ .......|+..|..+.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 99999853211001 11224566677777654 3566777888888874
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=88.47 E-value=0.84 Score=40.33 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=70.0
Q ss_pred cchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Q 015383 82 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 160 (408)
Q Consensus 82 LLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepY-LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~L 160 (408)
.+|.++.++.+ .+.......+..+..|..++....+.. -...+|.++.++- ++++.+|..|+..
T Consensus 97 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~ 161 (252)
T 4db8_A 97 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHHH
Confidence 45666555532 355666667888888888876653332 2347888877761 3467999999999
Q ss_pred HHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 161 IASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 161 L~~I~~kf~~sy~-~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
|..|+........ -....++..|.+.+.++ ......-|+..|..+
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNI 207 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHH
Confidence 9999853211000 01233566777777765 566677788888877
No 36
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.92 E-value=20 Score=40.37 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=114.5
Q ss_pred HHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCc--ccccchhhhHHHHHHHHhccccCCCC
Q 015383 69 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRLGNRF 146 (408)
Q Consensus 69 AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L--~IepYLHqLlPsvLTCll~k~L~~~~ 146 (408)
++.++-...+....+|+ =+.+.+...+.|-..-..-|-.+.+|...... ..|||+-.++|.++.+.-.|
T Consensus 37 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk------ 107 (986)
T 2iw3_A 37 EVASFLNGNIIEHDVPE---HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK------ 107 (986)
T ss_dssp HHHHHHTSSCSSSSCCH---HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS------
T ss_pred HHHHHHhccccccccch---hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC------
Confidence 46676665666677775 34455555554422226778888899854433 77999999999888887333
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHH
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 226 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~ 226 (408)
.=..|+-|..-+..|+..+.. .--..++..+.+.+. ...-..+.-||+..+..|-..+ ...+-=.++.+...
T Consensus 108 ---~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~-~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 108 ---DKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIV-ETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPV 179 (986)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcc
Confidence 237999999999999998864 222677777777774 3334889999999999886554 34444455566666
Q ss_pred hhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhhhhhh
Q 015383 227 LEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 267 (408)
Q Consensus 227 Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~ 267 (408)
+...+-+.| ..-...-+.++..+++.+-+.++..|
T Consensus 180 ~~~~~~d~k------~~v~~~~~~~~~~~~~~~~n~d~~~~ 214 (986)
T 2iw3_A 180 LSETMWDTK------KEVKAAATAAMTKATETVDNKDIERF 214 (986)
T ss_dssp HHHHTTCSS------HHHHHHHHHHHHHHGGGCCCTTTGGG
T ss_pred hHhhcccCc------HHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 666655422 22222334556666666666666655
No 37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.84 E-value=2.7 Score=36.44 Aligned_cols=140 Identities=12% Similarity=0.071 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCchHHHHHHHH---hhhhc-CCcc------ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHh-cCCC
Q 015383 51 DKIRELTVSRSNSTVFKQALL---SLAMD-SGLH------PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL-RNPH 119 (408)
Q Consensus 51 ~kIteall~~~d~~~r~~AL~---sL~tD-~GL~------qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL-~Np~ 119 (408)
..+++.+.+ +++..+..|+. .|..+ +... ..+|.++.++.+ .+.......+.....|. .++.
T Consensus 47 ~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~ 119 (252)
T 4hxt_A 47 EVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPDE 119 (252)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHH
Confidence 344444433 44556665444 44443 2111 245666665542 35566666777777777 4444
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHhcCCCCCcchhh
Q 015383 120 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHY 198 (408)
Q Consensus 120 L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~s-y~~L~pRI~~tL~k~llDp~k~l~t~Y 198 (408)
..-.-.-+..+|.++.++- ++++.+|..|+..|..|+...... ..-....++..|.+.+.++ ......
T Consensus 120 ~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 188 (252)
T 4hxt_A 120 AIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQK 188 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHH
Confidence 3322233456777776652 345899999999999998632110 1112334677788877654 356777
Q ss_pred hHHHHHHhhC
Q 015383 199 GAIQGLAALG 208 (408)
Q Consensus 199 GAI~GL~aLG 208 (408)
.|+..|..+.
T Consensus 189 ~a~~~L~~l~ 198 (252)
T 4hxt_A 189 EAARALANIA 198 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7888887774
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=87.81 E-value=1.9 Score=44.43 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=82.5
Q ss_pred hHHHHHHHH---hhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhc
Q 015383 63 STVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVS 139 (408)
Q Consensus 63 ~~~r~~AL~---sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~ 139 (408)
...|++|++ .+.++..++.+++.+..|+.+ .+...-....+.+..+..+ ..+.....++.++..+-
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~------~d~~~r~~~v~aI~~la~~----~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATE------VDVDFVRKAVRAIGRCAIK----VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHc-
Confidence 344555543 344555555566655555432 1233333333444343333 12233444454444441
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccc
Q 015383 140 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 219 (408)
Q Consensus 140 k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~ 219 (408)
+....+|+.+...+..|+++|. .++..++..|.+.+-+ ......+..+++.|..+|... ++
T Consensus 401 --------~~~~~v~~e~i~~l~~ii~~~p----~~~~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~~~~------~~ 461 (591)
T 2vgl_B 401 --------TKVNYVVQEAIVVIRDIFRKYP----NKYESIIATLCENLDS-LDEPDARAAMIWIVGEYAERI------DN 461 (591)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHSC----SSCCTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTCTTC------TT
T ss_pred --------ccchHHHHHHHHHHHHHHHHCc----chHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHcccccc------cC
Confidence 1234678888888888888854 4455666666666543 333445788888898888643 23
Q ss_pred hHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhh
Q 015383 220 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 261 (408)
Q Consensus 220 L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~ 261 (408)
.+.+++.+-..+.. |-..|..+++.|+.++..
T Consensus 462 ~~~~l~~l~~~~~~----------~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 462 ADELLESFLEGFHD----------ESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHHSTTCSS----------SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHHHh
Confidence 33333333222211 113466677777766643
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.72 E-value=1.3 Score=48.25 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcCCCc--ccc--cchhhhH-HHHHHHHhccc--c---CCCC---------CCcchhHHHHHHHHH
Q 015383 101 FSLLFALMRVARSLLRNPHI--HIE--PYLHQMM-PSVITCLVSKR--L---GNRF---------SDNHWDLRNFVADLI 161 (408)
Q Consensus 101 l~~L~~LLrmv~ALL~Np~L--~Ie--pYLHqLl-PsvLTCll~k~--L---~~~~---------~~~hw~LRd~AA~LL 161 (408)
-......+.+..+++..+.. .+. +|+.+|+ +.++.++.-+. . ...+ .++.|.+|..|+.+|
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 34455678888888877653 223 8888888 67777764321 1 1111 245689999999999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHHhc----CCCCCcchhhhHHHHHHhh
Q 015383 162 ASICTRFGHVYQNLQSRVTRTLLHAFL----DPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 162 ~~I~~kf~~sy~~L~pRI~~tL~k~ll----Dp~k~l~t~YGAI~GL~aL 207 (408)
..++..|++ .+-+-++..+...|. ++......+.+|+..+.++
T Consensus 386 ~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 386 KELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 999999873 233334444333333 4455577889999998887
No 40
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.48 E-value=9.4 Score=35.07 Aligned_cols=146 Identities=14% Similarity=0.037 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcc--cccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchH
Q 015383 99 KNFSLLFALMRVARSLLRNPHIH--IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQ 176 (408)
Q Consensus 99 ~nl~~L~~LLrmv~ALL~Np~L~--IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~ 176 (408)
.|.......+..+.+++.+-... ...+....+..++..++.|-++.. .=.+|+.|...+-.++..... .
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~~~~~-----~ 137 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCGLDTS-----I 137 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHTSSS-----S
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhcCc-----H
Confidence 36677777888888888764432 233445566777777777766542 226899998888888765432 1
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHh----hCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHH
Q 015383 177 SRVTRTLLHAFLDPTKSLSQHYGAIQGLAA----LGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGAL 252 (408)
Q Consensus 177 pRI~~tL~k~llDp~k~l~t~YGAI~GL~a----LG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaL 252 (408)
..+...+...+- +++....-+++..|.. +|...+. .-|.++.+...+-+.+.+ .|..+|.+|..+.+.+
T Consensus 138 ~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~--~k~~l~~i~~~l~k~l~d---~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 TQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVN--VQTFLPELLKHVPQLAGH---GDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCC--HHHHHHHHGGGHHHHHTC---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCC--chhHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHH
Confidence 345555555553 5667777776666553 3543321 112334444455555543 5788999999999999
Q ss_pred HHhhhhhh
Q 015383 253 QCAAGLCV 260 (408)
Q Consensus 253 l~A~g~~~ 260 (408)
..-+|...
T Consensus 211 y~~~G~~~ 218 (278)
T 4ffb_C 211 YKVTGNNS 218 (278)
T ss_dssp HTC-----
T ss_pred HHHhCcch
Confidence 99988654
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=87.06 E-value=2.9 Score=43.04 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchH--HHHHHHHHHHhcCCCCCcchhhhH
Q 015383 123 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQ--SRVTRTLLHAFLDPTKSLSQHYGA 200 (408)
Q Consensus 123 epYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~--pRI~~tL~k~llDp~k~l~t~YGA 200 (408)
......++|.+..|+ .+.+..+|..|+..+..|++.+. .+- ..++..+.+.|.|+ .....++|
T Consensus 116 ~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p----~~~~~~~~~~~l~~lL~d~--d~~V~~~A 180 (591)
T 2vgl_B 116 DKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINA----QMVEDQGFLDSLRDLIADS--NPMVVANA 180 (591)
T ss_dssp GGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSC----CCHHHHHHHHHHHHTTSCS--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhCh----hhcccccHHHHHHHHhCCC--ChhHHHHH
Confidence 334455677788777 24578999999999999999643 333 36788888887654 57888999
Q ss_pred HHHHHhhCHH
Q 015383 201 IQGLAALGPS 210 (408)
Q Consensus 201 I~GL~aLG~~ 210 (408)
+..|..++.+
T Consensus 181 ~~aL~~i~~~ 190 (591)
T 2vgl_B 181 VAALSEISES 190 (591)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhh
Confidence 9999998653
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.58 E-value=9.2 Score=39.73 Aligned_cols=139 Identities=11% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHH---hhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccc
Q 015383 49 YFDKIRELTVSRSNSTVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY 125 (408)
Q Consensus 49 Yf~kIteall~~~d~~~r~~AL~---sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepY 125 (408)
|+..|... +.++|...|+.||+ .|.+..-+..+++.|..|+.+ .+.+.-..+.+.+..+..+= .+-
T Consensus 351 ~~~~i~~~-l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~------~d~e~r~~~v~~I~~la~k~----~~~ 419 (618)
T 1w63_A 351 HRSTIVDC-LKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS------CEPEFKADCASGIFLAAEKY----APS 419 (618)
T ss_dssp GHHHHHHG-GGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHSS----CCC
T ss_pred HHHHHHHH-ccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHh----Ccc
Confidence 44555554 44456777887776 456666688899888888875 24444444555555555431 233
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 015383 126 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 205 (408)
Q Consensus 126 LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~ 205 (408)
.+..++.++.++-.. +. ..++.+...+..|+++ ++.++..++..|.+.+.++...-...-.+++.|.
T Consensus 420 ~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 444455555444221 11 2334455567777776 5678888999998888754333333345777777
Q ss_pred hhCHHH
Q 015383 206 ALGPSV 211 (408)
Q Consensus 206 aLG~~a 211 (408)
.+|...
T Consensus 487 Ey~~~i 492 (618)
T 1w63_A 487 EYGDLL 492 (618)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 776543
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.26 E-value=13 Score=31.95 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhH
Q 015383 51 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 130 (408)
Q Consensus 51 ~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLl 130 (408)
..+.+.+. ..+...|..|+..|..-.. ...+|.++..+.+ .+...-. ..+++|-.-.. ...+
T Consensus 22 ~~L~~~L~-~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~---~a~~aL~~~~~-------~~~~ 83 (211)
T 3ltm_A 22 EMYIKNLQ-DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRR---AAADALGQIGD-------ERAV 83 (211)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SCHHHHH---HHHHHHHHHCC-------GGGH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC------CCHHHHH---HHHHHHHhhCC-------HHHH
Confidence 44555543 3456667777766654322 3455555554432 1222211 12222222111 2344
Q ss_pred HHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH
Q 015383 131 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 131 PsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 209 (408)
|.++.++ .+.++.+|..|+..|+.+.. +.....|.+.+.| ........|+.+|..+|.
T Consensus 84 ~~L~~~l---------~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 84 EPLIKAL---------KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD--EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHT---------TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH---------cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCC
Confidence 5555443 13345667777666665521 1233344444433 234555666666666654
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.29 E-value=17 Score=31.15 Aligned_cols=122 Identities=15% Similarity=0.141 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhh
Q 015383 50 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 129 (408)
Q Consensus 50 f~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqL 129 (408)
...+.+.+. +++...|..|+..|..-.. ...+|.++..+.+ .+...-...+.....+ .+ ...
T Consensus 52 ~~~L~~~l~-~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~------~~~~vr~~a~~aL~~~-~~---------~~~ 113 (211)
T 3ltm_A 52 VEPLIKALK-DEDAWVRRAAADALGQIGD-ERAVEPLIKALKD------EDGWVRQSAAVALGQI-GD---------ERA 113 (211)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SSHHHHHHHHHHHHHH-CC---------GGG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHcC------CCHHHHHHHHHHHHHh-Cc---------HHH
Confidence 344455444 4566778877776665432 2345555554421 2322222222222222 11 235
Q ss_pred HHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH
Q 015383 130 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 130 lPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 209 (408)
+|.++.++ .+.+|.+|..|+..|+.+. . +..+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 114 ~~~L~~~l---------~d~~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 114 VEPLIKAL---------KDEDWFVRIAAAFALGEIG----D------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHH---------hCCCHHHHHHHHHHHHHcC----C------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 56666554 2568899999999999883 2 23556666766554 46788999999999986
Q ss_pred H
Q 015383 210 S 210 (408)
Q Consensus 210 ~ 210 (408)
.
T Consensus 173 ~ 173 (211)
T 3ltm_A 173 E 173 (211)
T ss_dssp H
T ss_pred h
Confidence 3
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=84.83 E-value=21 Score=34.03 Aligned_cols=158 Identities=11% Similarity=0.054 Sum_probs=90.3
Q ss_pred ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 81 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYL-HqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
..+|.|++.+... .+.......+..+..|..|..-..+..+ +..+|.++.++-. .+..+|..|+.
T Consensus 124 g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~---------~d~~v~~~A~~ 189 (296)
T 1xqr_A 124 GALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ---------QVQKLKVKSAF 189 (296)
T ss_dssp THHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHH
T ss_pred CCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHH
Confidence 3678888777642 1344555566677777766543333333 4688888887732 34589999999
Q ss_pred HHHHHHHHhCCCCcc-hHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh---CHHHHHHhhccchHHHHHHhhHhhhhHh
Q 015383 160 LIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLLEK 235 (408)
Q Consensus 160 LL~~I~~kf~~sy~~-L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~~~ 235 (408)
.|+.++......-.. ...-++..|.+.|.+++ ...+.=|+.+|..+ ++.+++.+--+. ..|...|++.+.
T Consensus 190 aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~--- 263 (296)
T 1xqr_A 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQ--- 263 (296)
T ss_dssp HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHH---
T ss_pred HHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHH---
Confidence 999999862211111 13345667777776553 44445555555544 667766644332 223444444322
Q ss_pred hhhhhhHhH-HHHHHHHHHHhhhhhhh
Q 015383 236 QKNEMKRHE-AWRVYGALQCAAGLCVY 261 (408)
Q Consensus 236 ~~~~~~r~e-a~~V~gaLl~A~g~~~~ 261 (408)
..+.+| ...+|.-...-+.+|+.
T Consensus 264 ---~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 264 ---LLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp ---HHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred ---HccchHHHHHHHHHHHHHHHHHcC
Confidence 122244 46677777777777754
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.51 E-value=20 Score=30.47 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhh
Q 015383 50 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 129 (408)
Q Consensus 50 f~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqL 129 (408)
...+.+.+. .++...|..|+..|..-.. ...+|.++..+.+ .+...-. ..+++|-.... ...
T Consensus 47 ~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~d------~~~~vr~---~a~~aL~~~~~-------~~~ 108 (201)
T 3ltj_A 47 VEPLIKALK-DEDAWVRRAAADALGQIGD-ERAVEPLIKALKD------EDGWVRQ---SAAVALGQIGD-------ERA 108 (201)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SSHHHHH---HHHHHHHHHCC-------GGG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHcC------CCHHHHH---HHHHHHHHhCc-------HHH
Confidence 445555553 4566778877776654321 2345555554422 2222222 22333322111 235
Q ss_pred HHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH
Q 015383 130 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 130 lPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 209 (408)
+|.++.++ .+.+|.+|..|+..|+.+.. +..+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 109 ~~~L~~~l---------~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 109 VEPLIKAL---------KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 66666554 25578999999999998832 34556677777665 56789999999999986
Q ss_pred HH
Q 015383 210 SV 211 (408)
Q Consensus 210 ~a 211 (408)
..
T Consensus 168 ~~ 169 (201)
T 3ltj_A 168 ER 169 (201)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 47
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=83.38 E-value=8.8 Score=38.00 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=83.9
Q ss_pred cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchh-hhHHHHHHHHhccccCCCCCCcchhHHHHHH
Q 015383 80 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 158 (408)
Q Consensus 80 ~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLH-qLlPsvLTCll~k~L~~~~~~~hw~LRd~AA 158 (408)
..++|.++..+.. .+.......+..+..|..++.-.++..+. .++|.++.++- +.++.+|..|+
T Consensus 243 ~~~l~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~v~~~a~ 307 (528)
T 4b8j_A 243 RPALPALARLIHS------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HPSPSVLIPAL 307 (528)
T ss_dssp TTHHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---------CCChhHHHHHH
Confidence 3456666655521 35666666777777777665443333222 46777777662 23579999999
Q ss_pred HHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh--CH-HHHHHhhc-cchHHHHHHhhHhhhh
Q 015383 159 DLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL--GP-SVVHLLIL-PNLELYLKFLEPEMLL 233 (408)
Q Consensus 159 ~LL~~I~~kf~~sy-~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL--G~-~aVr~lll-P~L~~y~~~Le~~l~~ 233 (408)
.+|+.|+....... .-+...++..|.+.+.++. ......-|+..|..+ |. +.+..++- .-++.+...|+.
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---- 382 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---- 382 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 99999985211000 0112345666777776542 445566677777766 22 33333332 223333333332
Q ss_pred HhhhhhhhHhHHHHHHHHHHHh
Q 015383 234 EKQKNEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 234 ~~~~~~~~r~ea~~V~gaLl~A 255 (408)
.+...|.+|-.+.+-|...
T Consensus 383 ---~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 383 ---AEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp ---SCHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHcC
Confidence 1334566665555555443
No 48
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=81.79 E-value=12 Score=37.12 Aligned_cols=111 Identities=8% Similarity=0.020 Sum_probs=64.8
Q ss_pred cchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccc-cchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Q 015383 82 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 160 (408)
Q Consensus 82 LLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~Ie-pYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~L 160 (408)
.+|.|+.++.+ .+.......+.....|..+..-.-+ ..-+..+|+++.++- .+.++.+|..|+..
T Consensus 161 ~i~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--------~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 161 AVPIFVKLLGS------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--------EHTKLSMLRNATWT 226 (528)
T ss_dssp HHHHHHHHTTC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--------TTCCHHHHHHHHHH
T ss_pred cHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--------cCCCHHHHHHHHHH
Confidence 56666665543 2334444444555555443211111 111236777776652 13468999999999
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC
Q 015383 161 IASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208 (408)
Q Consensus 161 L~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 208 (408)
|..+|......-......++..|.+.+.++ ......-|+.+|..+.
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 999998653333334456777788877654 3556677777887774
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.48 E-value=27 Score=38.32 Aligned_cols=88 Identities=11% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCc--------chHHH
Q 015383 107 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ--------NLQSR 178 (408)
Q Consensus 107 LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~--------~L~pR 178 (408)
+-|+.+-+-.|+ .|+..+++.++.++ .+.+-.+|..||..+..+|+.++.... .--+.
T Consensus 524 lgry~~~~~~~~-----~~l~~vl~~ll~~l---------~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~ 589 (1049)
T 3m1i_C 524 VGQYPRFLKAHW-----NFLRTVILKLFEFM---------HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1049)
T ss_dssp HHHCHHHHHHCH-----HHHHHHHHHHHHHT---------TSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHHhHH-----HHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHH
Confidence 344444444443 45555555555543 234679999999999999999875321 22456
Q ss_pred HHHHHHHHhcCCC-CCcchhhhHHHHHH-hhC
Q 015383 179 VTRTLLHAFLDPT-KSLSQHYGAIQGLA-ALG 208 (408)
Q Consensus 179 I~~tL~k~llDp~-k~l~t~YGAI~GL~-aLG 208 (408)
|++.|.+.+.+.. ......|-|+..+. +.|
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 7777777765422 12345666666654 345
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.01 E-value=30 Score=30.93 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=35.7
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 208 (408)
+.++.+|..|+..|+.+.. +..+..|.+.+.|++ ....+.|+.+|..+|
T Consensus 139 d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND----------KATIPLLINLLKDPN--GDVRNWAAFAININK 187 (280)
T ss_dssp CSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSS--HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCC--HHHHHHHHHHHHhhc
Confidence 5679999999999987643 224556666766654 457899999999886
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=80.87 E-value=32 Score=35.94 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=56.5
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 015383 123 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 202 (408)
Q Consensus 123 epYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~ 202 (408)
..++..++|.|..|+.+. +.+..+|..|+-.+.+|++.+.+..+. +.+...+.+.|-| +..+..++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~~-------d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAG-------DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHCS-------SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 346678899999998642 457799999999999999986554441 1555666666644 55688999999
Q ss_pred HHHhhCHH
Q 015383 203 GLAALGPS 210 (408)
Q Consensus 203 GL~aLG~~ 210 (408)
.|..+..+
T Consensus 210 ~l~~i~~~ 217 (621)
T 2vgl_A 210 LITTLAQK 217 (621)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888554
No 52
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.48 E-value=17 Score=39.91 Aligned_cols=156 Identities=9% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccc-cchhhhHHHHHHHHhccccCCCC
Q 015383 68 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRF 146 (408)
Q Consensus 68 ~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~Ie-pYLHqLlPsvLTCll~k~L~~~~ 146 (408)
++|..+..-.+ ..+++++..++.+.+...-.++......+..+.|+...=.-..+ +|+.++++.+++..-. . . .
T Consensus 435 ~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~--~-~-~ 509 (1049)
T 3m1i_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK--K-R-G 509 (1049)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS--S-C-S
T ss_pred HHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh--h-c-c
Confidence 34544442222 24555555555555443234677788888888888754221212 4566666666552110 0 0 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhc--------c
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL--------P 218 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lll--------P 218 (408)
.++|-.+|..+..++++.++-+.. .+..-+.++..+.+.+.|+ +...+--|..+|..|..+.-.. ++ |
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~-l~~~~~~~~~p 585 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEP 585 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCc
Confidence 135666676788899988865544 3566777888888888765 4566667788888887654333 44 9
Q ss_pred chHHHHHHhhHhhh
Q 015383 219 NLELYLKFLEPEML 232 (408)
Q Consensus 219 ~L~~y~~~Le~~l~ 232 (408)
+++.+...|...+.
T Consensus 586 ~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 586 FIQTIIRDIQKTTA 599 (1049)
T ss_dssp HHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877664
No 53
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.77 E-value=55 Score=30.98 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhc-cc----hHHHH
Q 015383 150 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL-PN----LELYL 224 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lll-P~----L~~y~ 224 (408)
.-++|.+-+.+++.+|++ .+.+.++++.+|...+-| ......=.+|.+...+-+.+.+.+.- |+ ....|
T Consensus 66 ~~~vrk~~~~Fi~e~~~~----k~~l~~~~l~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W 139 (257)
T 3gs3_A 66 NMEVRKQVVAFVEQVCKV----KVELLPHVINVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAW 139 (257)
T ss_dssp CHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 468999999999999977 578999999999998875 44666668899999888888887653 33 35666
Q ss_pred HHhhHhhhh----HhhhhhhhHhHHHHHHHHHHHh
Q 015383 225 KFLEPEMLL----EKQKNEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 225 ~~Le~~l~~----~~~~~~~~r~ea~~V~gaLl~A 255 (408)
+.+...... -...|..+|..|.|+...++-+
T Consensus 140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 655433221 1224566677777776665544
No 54
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.63 E-value=2.3 Score=47.70 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcc-hhHHHHHHHHHHHHHHHhCCCCcchHHH
Q 015383 100 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNH-WDLRNFVADLIASICTRFGHVYQNLQSR 178 (408)
Q Consensus 100 nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~h-w~LRd~AA~LL~~I~~kf~~sy~~L~pR 178 (408)
++ .-..+|.+++.+.-...+.+..--. ..|+.+++.- ..|++ -++|+.||.+|+-|++ ++...... ..
T Consensus 815 sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~-----L~D~q~~EVRe~Aa~tLsgll~-c~~~~~~~-~~ 883 (997)
T 1vsy_5 815 SN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSN-----LYNEQFVEVRVRAASILSDIVH-NWKEEQPL-LS 883 (997)
T ss_dssp SS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTT-----TTCSSCHHHHHHHHHHHHHHHH-SCCSHHHH-HH
T ss_pred cH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHH-cCCchhhH-HH
Confidence 56 6666778888877766666665433 4556655442 24678 8999999999999973 33111222 24
Q ss_pred HHHHHHHHhcC---C-------CCCcchhhhHHHHHHhh
Q 015383 179 VTRTLLHAFLD---P-------TKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 179 I~~tL~k~llD---p-------~k~l~t~YGAI~GL~aL 207 (408)
++..|.+.+.. . .+......|||.||.|+
T Consensus 884 li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 884 LIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 55555554432 0 12236789999999986
No 55
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=65.80 E-value=1.2e+02 Score=30.61 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhc-cch----HHH
Q 015383 149 NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL-PNL----ELY 223 (408)
Q Consensus 149 ~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lll-P~L----~~y 223 (408)
..-++|.+.+.+|+..|.+ ...+-++++.+|...+.|+ ...+.=.+|.+...+-+.+.+-++- |+. ...
T Consensus 75 ~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~ 148 (386)
T 3o2t_A 75 KSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDE--NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEAC 148 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 3568999999999999986 5677899999998888653 4556667888888887777776542 332 456
Q ss_pred HHHhhHhhhh----HhhhhhhhHhHHHHHHHHHHHh
Q 015383 224 LKFLEPEMLL----EKQKNEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 224 ~~~Le~~l~~----~~~~~~~~r~ea~~V~gaLl~A 255 (408)
|+.+...... -...|..+|..+.|+...++-+
T Consensus 149 W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 149 WDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 6655433221 1224667788888777766643
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=64.54 E-value=51 Score=34.11 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=52.1
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 015383 125 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 204 (408)
Q Consensus 125 YLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL 204 (408)
.+..++|.+..|+-. .+..+|..|+..+..|++.+. .+-.+++..+.+.+.| +.....+.|+..|
T Consensus 139 ~~~~l~~~l~~~L~~---------~~~~VRk~A~~al~~l~~~~p----~~v~~~~~~l~~lL~D--~d~~V~~~Al~~L 203 (618)
T 1w63_A 139 MCRDLAGEVEKLLKT---------SNSYLRKKAALCAVHVIRKVP----ELMEMFLPATKNLLNE--KNHGVLHTSVVLL 203 (618)
T ss_dssp HHHHHHHHHHHHHHS---------CCHHHHHHHHHHHHHHHHHCG----GGGGGGGGGTTTSTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHCh----HHHHHHHHHHHHHhCC--CCHhHHHHHHHHH
Confidence 345667888888743 456999999999999999854 4444556666666654 5578899999999
Q ss_pred HhhCH
Q 015383 205 AALGP 209 (408)
Q Consensus 205 ~aLG~ 209 (408)
..++.
T Consensus 204 ~~i~~ 208 (618)
T 1w63_A 204 TEMCE 208 (618)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 99974
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=63.57 E-value=68 Score=33.45 Aligned_cols=144 Identities=12% Similarity=0.141 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHH---hhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccc
Q 015383 47 QLYFDKIRELTVSRSNSTVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE 123 (408)
Q Consensus 47 QlYf~kIteall~~~d~~~r~~AL~---sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~Ie 123 (408)
+.|...|.+.+..++|...|..||+ .|-++.-+..++..+..|+.+. |.+.-..+++-+..+..+=.=..+
T Consensus 367 ~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~------d~~~~~~~v~~I~~la~k~~~~~~ 440 (621)
T 2vgl_A 367 KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETA------DYSIREEIVLKVAILAEKYAVDYT 440 (621)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3344444443331445556666554 4455555777777777776541 222222233333333221001234
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 015383 124 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQG 203 (408)
Q Consensus 124 pYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~G 203 (408)
-|+..|+. ++..- |+. +.+.+...+..|+.+ ++.++..++..|...+.||...-.-...|++.
T Consensus 441 ~~v~~Ll~-ll~~~-----~~~-------v~~ev~~~l~~ii~~----~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wi 503 (621)
T 2vgl_A 441 WYVDTILN-LIRIA-----GDY-------VSEEVWYRVIQIVIN----RDDVQGYAAKTVFEALQAPACHENLVKVGGYI 503 (621)
T ss_dssp HHHHHHHH-HHHHH-----GGG-------SCSHHHHHHHHHHGG----GCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhh-----ccc-------chHHHHHHHHHHHhC----ChhHHHHHHHHHHHHHcCccchHHHHHHHHHH
Confidence 44443333 22211 111 222233444445543 47789999999999999887655555677788
Q ss_pred HHhhCHHHHH
Q 015383 204 LAALGPSVVH 213 (408)
Q Consensus 204 L~aLG~~aVr 213 (408)
|...|...-.
T Consensus 504 lGEy~~~~~~ 513 (621)
T 2vgl_A 504 LGEFGNLIAG 513 (621)
T ss_dssp HHHHTHHHHS
T ss_pred hcchHHHhcc
Confidence 9888876543
No 58
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=63.12 E-value=91 Score=34.89 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcc--------hHHH
Q 015383 107 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--------LQSR 178 (408)
Q Consensus 107 LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~--------L~pR 178 (408)
+-|..+=+-.|| +++|++|..++..- .++|-.+.+.|+..+..||.+|+....+ .-.-
T Consensus 524 lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 524 VGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 445555554443 34667777766542 2445689999999999999998854321 3456
Q ss_pred HHHHHHHHhcC-CCCCcchhhhHHHHHHh-hCHH-----HHHHhhccchHHHHHHh
Q 015383 179 VTRTLLHAFLD-PTKSLSQHYGAIQGLAA-LGPS-----VVHLLILPNLELYLKFL 227 (408)
Q Consensus 179 I~~tL~k~llD-p~k~l~t~YGAI~GL~a-LG~~-----aVr~lllP~L~~y~~~L 227 (408)
|++.+.+++-+ +.+.....|.||..+.. ++.+ .++.+ +|.+..-|+.|
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L-~~~~~~~~~~l 644 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDL-MQLPNMAWDTI 644 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH-THHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHH-HHhHHHHHHHH
Confidence 77777777642 22334567777766553 4533 33443 44444444443
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=61.77 E-value=22 Score=30.14 Aligned_cols=139 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred HHHHHhcCCCchHHHHHHHHhhhh----cCCc------cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcc
Q 015383 52 KIRELTVSRSNSTVFKQALLSLAM----DSGL------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH 121 (408)
Q Consensus 52 kIteall~~~d~~~r~~AL~sL~t----D~GL------~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~ 121 (408)
.+.+.+. .++++.+..|+..|.+ ++.. ...+|.++.++.+ .+.......+..+..|..+..-.
T Consensus 58 ~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~ 130 (210)
T 4db6_A 58 ALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGNEQ 130 (210)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHHH
Confidence 3444433 3455666655544432 2221 2356777766643 24445555666666666433222
Q ss_pred cccc-hhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHhcCCCCCcchhhh
Q 015383 122 IEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYG 199 (408)
Q Consensus 122 IepY-LHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~-~L~pRI~~tL~k~llDp~k~l~t~YG 199 (408)
.+.. -+..+|.++.++- +++..+|..|+..|..+|......-. -....++..|.+.+.+ .+...+.-
T Consensus 131 ~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~ 199 (210)
T 4db6_A 131 IQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKE 199 (210)
T ss_dssp HHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHH
Confidence 2211 2357787777762 23568999999999999863211000 0122345666666654 34455666
Q ss_pred HHHHHHhhC
Q 015383 200 AIQGLAALG 208 (408)
Q Consensus 200 AI~GL~aLG 208 (408)
|...|..|.
T Consensus 200 a~~aL~~l~ 208 (210)
T 4db6_A 200 AQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 666666553
No 60
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=60.04 E-value=42 Score=37.30 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=58.4
Q ss_pred ccchhhHHHhHHHHhhccC---CH-HH---HHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhH
Q 015383 81 PLVPYFTYFISEEVTRSLK---NF-SL---LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 153 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl~---nl-~~---L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~L 153 (408)
.-+|.++.++..-+...+. +. -. +..+-|..+=+..|| +.+|++|..++..+-- .+.+=.+
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---------~~l~~~L~~ll~~~gl---~~~~~~V 553 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES---------AAIPALIEYFVGPRGI---HNTNERV 553 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---------TTHHHHHHHHTSTTTT---TCCCTTT
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHhccccc---cCCChhH
Confidence 4566666666654443221 11 11 122344444444443 5678888888773211 1334579
Q ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhc
Q 015383 154 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 188 (408)
Q Consensus 154 Rd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~ll 188 (408)
|..|+.++.++|+.++..-..--..|+..+...|.
T Consensus 554 ~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 554 RPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999999999999987655555668888776665
No 61
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=54.73 E-value=54 Score=33.64 Aligned_cols=124 Identities=6% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHhcCCCchHHHHHH---HHhhhhcCCc-------cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcc
Q 015383 52 KIRELTVSRSNSTVFKQA---LLSLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH 121 (408)
Q Consensus 52 kIteall~~~d~~~r~~A---L~sL~tD~GL-------~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~ 121 (408)
.+++.+. .+++..|..| |..|..+..- ...+|.++..+.+. .+........+....|..++...
T Consensus 18 ~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 18 ELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp HHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhH
Confidence 3344333 3455566544 4566665531 14566666665421 24555555666666777766533
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCC
Q 015383 122 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 190 (408)
Q Consensus 122 IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp 190 (408)
...+-...+|.++.++- .++..+|..|+..|..|+......-..+ +..++..|.+.+.++
T Consensus 92 ~~i~~~g~i~~Lv~lL~---------~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHTTTHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHcCCHHHHHHHHh---------CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 33344457888777752 1236899999999999998753322222 345677788887765
No 62
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=54.46 E-value=53 Score=31.79 Aligned_cols=126 Identities=6% Similarity=0.049 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHH---hhhhcCCc-------cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Q 015383 50 FDKIRELTVSRSNSTVFKQALL---SLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH 119 (408)
Q Consensus 50 f~kIteall~~~d~~~r~~AL~---sL~tD~GL-------~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~ 119 (408)
...+.+.+. .+++..|..|+. .|..+..- ...+|.++..+... .+........+....|..++.
T Consensus 19 i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 19 IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCch
Confidence 444444433 455666665554 44433221 13566666666432 255555566666667766654
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCC
Q 015383 120 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 190 (408)
Q Consensus 120 L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp 190 (408)
..-.-.-...+|.++.++- +++..+|..|+..|..||....+.-..+ +..++..|.+.+.++
T Consensus 93 ~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred hHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 2222222356777777652 2236899999999999998754322222 355677788888764
No 63
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=52.36 E-value=39 Score=36.10 Aligned_cols=117 Identities=6% Similarity=0.016 Sum_probs=65.5
Q ss_pred CCchHHHHHHHHh---hhhcCC-------ccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhh
Q 015383 60 RSNSTVFKQALLS---LAMDSG-------LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 129 (408)
Q Consensus 60 ~~d~~~r~~AL~s---L~tD~G-------L~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqL 129 (408)
.+++..|..|+.. |..+.. ....+|.++.++... .+........+....|..++.-.-.-.-...
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 3456666665544 433321 224566666666432 2444444555555566555432111112246
Q ss_pred HHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHhcCC
Q 015383 130 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 190 (408)
Q Consensus 130 lPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L-~pRI~~tL~k~llDp 190 (408)
+|.++.++- .++-.+|..|+..|..||..+.+.-..+ ...++..|.+.+.++
T Consensus 236 I~~Lv~lL~---------~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 236 IPALVNMLG---------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHc---------CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 777777652 2246899999999999998764422222 234666788887754
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=51.98 E-value=9.3 Score=30.94 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=39.1
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 209 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 209 (408)
+.+|.+|..|+..|+.+.. ++.+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG 102 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 4679999999999988742 35566777777654 46788999999999985
No 65
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=50.07 E-value=1.5e+02 Score=33.40 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=51.1
Q ss_pred hcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHH---hcc-ccCCC-----
Q 015383 75 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL---VSK-RLGNR----- 145 (408)
Q Consensus 75 tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCl---l~k-~L~~~----- 145 (408)
..+.++++++++..|... .+...-...+.+-.+++++..+..++.+..++|.++.++ +.| +....
T Consensus 345 ~~~~l~~~l~~lL~~t~~------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~ 418 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTH------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS 418 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTH
T ss_pred ChhHHHHHHHHHHHHHhC------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcc
Confidence 445566777777766542 244444445555556777765433444444555555554 333 22110
Q ss_pred -------CC------CcchhHHHHHHHHHHHHHHHhC
Q 015383 146 -------FS------DNHWDLRNFVADLIASICTRFG 169 (408)
Q Consensus 146 -------~~------~~hw~LRd~AA~LL~~I~~kf~ 169 (408)
.. +..|..|...+.++..||..+.
T Consensus 419 ~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 419 CEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 00 1248899999999999998863
No 66
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=49.96 E-value=18 Score=38.70 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCC-CCcchHHH
Q 015383 100 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-VYQNLQSR 178 (408)
Q Consensus 100 nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~-sy~~L~pR 178 (408)
+.......+..+..|..+..-. .-...++|.++..+ ...+|.+|..|+.+|+.|+..... ...-.+..
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---------~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g 441 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---------GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 3444455566666666555321 12356777777665 135789999999999999753100 00000122
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhhC
Q 015383 179 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208 (408)
Q Consensus 179 I~~tL~k~llDp~k~l~t~YGAI~GL~aLG 208 (408)
.+..|.+.+.++..+....+-|+.+|..+.
T Consensus 442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 442 GIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344555555543333356677777777764
No 67
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=49.56 E-value=95 Score=35.10 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383 104 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 183 (408)
Q Consensus 104 L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL 183 (408)
+..+++.+.....++++. ..++|.++..+++-.. +|=.+|..+-.+++..++-++ ..+.+-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~~~------~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNFDT------KDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHCCC------SCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhCCC------CChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 334444444444444331 1467777777655221 233699999999988877665 4688999999999
Q ss_pred HHHhcCCCC----------CcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHH
Q 015383 184 LHAFLDPTK----------SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 253 (408)
Q Consensus 184 ~k~llDp~k----------~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl 253 (408)
.+.+.|+.. .-..+.=|-.+|..|..+. ...++|++..+...++..+.... ...+.|-..+|.||+
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~-~~~L~p~~~~i~~~~~~~l~~~~---~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY-PQLVLPNFDMLYNHVKQLLSNEL---LLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC-HHHHGGGHHHHHHHHHHHHHSTT---TSCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCcc---cccHHHHHHHHHHHH
Confidence 988876211 1123455566666666544 45588999999999888775321 033556666777776
Q ss_pred Hhhhh-hhhhhhhhh--ccCCCccccccc
Q 015383 254 CAAGL-CVYDRLKTV--LLRPPKQSRWES 279 (408)
Q Consensus 254 ~A~g~-~~~~~~~~~--~~~~~~~~~~~~ 279 (408)
..+.. .-+++...+ ...+|....|.+
T Consensus 654 ~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 654 LISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 65322 113333332 335666677764
No 68
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=46.29 E-value=2.8e+02 Score=29.05 Aligned_cols=256 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred ecCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhh------hhcCCccccchhhHHHhHHHHhhccC--C---HH
Q 015383 34 IRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSL------AMDSGLHPLVPYFTYFISEEVTRSLK--N---FS 102 (408)
Q Consensus 34 vKp~vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL------~tD~GL~qLLPYfv~FIse~V~~nl~--n---l~ 102 (408)
+++..+.++++|.+.|+...+.-++..-...-+.-.+.-| ++-+|.|+|++++.... +....++ | ++
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa--~L~~~f~~sD~e~vd 239 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQA--DLEQTFNPSDPDCVD 239 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHH--TTTSCCCSSCHHHHH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHH--hccCCCCCcCHHHHH
Q ss_pred HHHHHHHHHHHHhcCCCc---ccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhC--CCCcchHH
Q 015383 103 LLFALMRVARSLLRNPHI---HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQS 177 (408)
Q Consensus 103 ~L~~LLrmv~ALL~Np~L---~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~--~sy~~L~p 177 (408)
.++..++++--+.....= +++.|..+++| .-..+......+.|.||=+ ++++.++.-++ +.-..+-+
T Consensus 240 RlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP------~l~~L~e~~~~~~~kL~LL--K~lAE~s~~~~~~e~a~~~l~ 311 (507)
T 3u0r_A 240 RLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLP------NLGTLTTPVEGLDIQLEVL--KLLAEMSSFCGDMEKLETNLR 311 (507)
T ss_dssp HHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGG------GTTCCCCC--CCCHHHHHH--HHHHHHHTTCCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHhhcc------chhhccccccchHHHHHHH--HHHHHHccCCCccchHHHHHH
Q ss_pred HHHHHHHHHhcCCCC---------------CcchhhhHHHHHHhhCHHHHHHhhc------------------cchHHHH
Q 015383 178 RVTRTLLHAFLDPTK---------------SLSQHYGAIQGLAALGPSVVHLLIL------------------PNLELYL 224 (408)
Q Consensus 178 RI~~tL~k~llDp~k---------------~l~t~YGAI~GL~aLG~~aVr~lll------------------P~L~~y~ 224 (408)
-|..+|++.+=.|.. .++-.---++.++.||.++-..+.= --...|.
T Consensus 312 ~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e~~~~~~lkdfr~RLqy~ar~~q~yi 391 (507)
T 3u0r_A 312 KLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYI 391 (507)
T ss_dssp HHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHCC--CCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHhhhh-----HhhhhhhhHhHHHHHHHHHHHhhhhhhhhhhhhh-ccCCCccccccccCcccccCCCccccccccc
Q 015383 225 KFLEPEMLL-----EKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV-LLRPPKQSRWESNRKGMIVFPSKRKASMDNL 298 (408)
Q Consensus 225 ~~Le~~l~~-----~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
+.|+..+.. .+..+...+.-|.|...=+..- +.|-.+.- ....-+.-.|+...+ ..-.||+++..+-
T Consensus 392 kkL~~~~~~K~~~~~kteenk~kv~alkt~~NI~~l----ikdlfh~pPsFk~~v~lSWk~~~~---~~~~kr~~~~~~~ 464 (507)
T 3u0r_A 392 RQLRLALQGKTGEALKTEENKIKVVALKITNNINVL----IKDLFHIPPSYKSTVTLSWKPVQK---VEIGQKRASEDTT 464 (507)
T ss_dssp HHHHHHHTTCCTTGGGSHHHHHHHHHHHHHHHHHHH----HHHCC--CCCCCCCCCCTTSCC------------------
T ss_pred HHHHHHhcccchhhhcchHHHHHHHHHHHHhhHHHH----HHHHhcCCCCceeeeeeeeecccc---cccCCCCCCccCC
Q ss_pred cCCCCccc
Q 015383 299 MLQPPVKK 306 (408)
Q Consensus 299 ~~~~~~~~ 306 (408)
+--++-|.
T Consensus 465 ~~~~~~~~ 472 (507)
T 3u0r_A 465 SGSPPKKS 472 (507)
T ss_dssp --------
T ss_pred CCCCcccc
No 69
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=45.63 E-value=2.4e+02 Score=28.02 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhh------hcCCccc-----cchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhc-C
Q 015383 50 FDKIRELTVSRSNSTVFKQALLSLA------MDSGLHP-----LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-N 117 (408)
Q Consensus 50 f~kIteall~~~d~~~r~~AL~sL~------tD~GL~q-----LLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~-N 117 (408)
.+++++.+.++ |.+.+..|...+| .+|-++. .+|.|++|+... ++............-|.. |
T Consensus 59 i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCC
Confidence 46778887764 4544545544333 4555544 489999988521 122222222222222322 2
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHH-----HHHHHHHhcCCC
Q 015383 118 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-----TRTLLHAFLDPT 191 (408)
Q Consensus 118 p~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI-----~~tL~k~llDp~ 191 (408)
+.-.-.-.=+-.+|.++.++- ..+-.+|+.|+..|+.|+.. .+..+..+ +..|...+.+++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~---------s~~~~v~e~A~~aL~nLa~d----~~~~r~~v~~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAVWALGNIAGD----GSAFRDLVIKHGAIDPLLALLAVPD 198 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHcCChHHHHHHHHhcc
Confidence 111100011236788877762 23458999999999999742 12333333 445666665443
No 70
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=44.65 E-value=2.1e+02 Score=31.41 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHH------hCCCCcch
Q 015383 102 SLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR------FGHVYQNL 175 (408)
Q Consensus 102 ~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~k------f~~sy~~L 175 (408)
.......+++.+|..|+...-.--=+.-+|+++..+....- ..+ ..|..||..|++|.-. |+ .|.-+
T Consensus 472 ~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~-~~~~~ 544 (778)
T 3opb_A 472 NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFK-KYSAL 544 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSS-SSCST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcC-CCccc
Confidence 33445677778887777654444344567777777654321 011 5899999999999842 32 12211
Q ss_pred HHHHHHHHHHHhc-CCCCC-----------cchhhhHHHHHHhh--CH----HHHHHhhccchHHHHHHhhHhhhhHhhh
Q 015383 176 QSRVTRTLLHAFL-DPTKS-----------LSQHYGAIQGLAAL--GP----SVVHLLILPNLELYLKFLEPEMLLEKQK 237 (408)
Q Consensus 176 ~pRI~~tL~k~ll-Dp~k~-----------l~t~YGAI~GL~aL--G~----~aVr~lllP~L~~y~~~Le~~l~~~~~~ 237 (408)
-.++-|.+-|. +|... .-.+|-|+.+|..| ++ +.+|..|+-. ...|..|+..|.. .
T Consensus 545 --~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s---~ 618 (778)
T 3opb_A 545 --NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD---E 618 (778)
T ss_dssp --THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC---S
T ss_pred --cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC---C
Confidence 45566666555 23321 12389999998877 22 3566655432 1367777777754 3
Q ss_pred hhhhHhHHHHHHHHHHHh
Q 015383 238 NEMKRHEAWRVYGALQCA 255 (408)
Q Consensus 238 ~~~~r~ea~~V~gaLl~A 255 (408)
+...|..|..+...|...
T Consensus 619 n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSH 636 (778)
T ss_dssp SHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 567888888888888753
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=39.40 E-value=50 Score=32.69 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhcc--CCHHHHHHHHHHHHHHhcCC
Q 015383 41 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNP 118 (408)
Q Consensus 41 vLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl--~nl~~L~~LLrmv~ALL~Np 118 (408)
+.+.|+-.+..+-...++.+.++-+|+.|+-+.- .|.+..|-.+.-+.+++..-+ +|......-+.+...+-++.
T Consensus 131 I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 131 ITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Q ss_pred CcccccchhhhHH-----HHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHhcCCCC
Q 015383 119 HIHIEPYLHQMMP-----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTK 192 (408)
Q Consensus 119 ~L~IepYLHqLlP-----svLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy-~~L~pRI~~tL~k~llDp~k 192 (408)
...+..-+.++-. +...|.+-+ ++.++.... +....++.+.+...|. ++
T Consensus 208 ~~a~~kLv~~l~~~~l~~~~~q~~llr-----------------------~l~~~~~~d~~~~~~~~~~~l~~~L~--~~ 262 (355)
T 3tjz_B 208 RLAVSKMISKFTRHGLKSPFAYCMMIR-----------------------VASRQLEDEDGSRDSPLFDFIESCLR--NK 262 (355)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHH-----------------------HHTCC-----------------CCCC--CS
T ss_pred hHHHHHHHHHHhcCCCcChHHHHHHHH-----------------------HHHHhccccchhhHHHHHHHHHHHHc--CC
Q ss_pred CcchhhhHHHHHHhhCH--HHHHHhhccchHHHHH
Q 015383 193 SLSQHYGAIQGLAALGP--SVVHLLILPNLELYLK 225 (408)
Q Consensus 193 ~l~t~YGAI~GL~aLG~--~aVr~lllP~L~~y~~ 225 (408)
+-...|.|+..+..+.. ..+......-+..++.
T Consensus 263 ~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLs 297 (355)
T 3tjz_B 263 HEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCS 297 (355)
T ss_dssp SHHHHHHHHHHHTC-----------CCCTHHHHHH
T ss_pred ChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc
No 72
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=38.60 E-value=46 Score=36.19 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=55.6
Q ss_pred HHHHHHHhc-cccCCCCCCc-chhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhC
Q 015383 131 PSVITCLVS-KRLGNRFSDN-HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208 (408)
Q Consensus 131 PsvLTCll~-k~L~~~~~~~-hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 208 (408)
-.=|-|+++ .++|.-..|. ---+||-||++|+.+ ...... -+++..+.+.+ ........+|++.||..+
T Consensus 220 AvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l--~~~~WEVRHGGLLGLKYL- 290 (800)
T 3oc3_A 220 FSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFL--DSGDWQVQFSGLIALGYL- 290 (800)
T ss_dssp HHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGG--GCSCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhc--CCCCeeehhhhHHHHHHH-
Confidence 344556665 5565533332 346999999999999 444444 24555555432 455689999999999999
Q ss_pred HHHHHHhhccchHHHHHHhhHhhhh
Q 015383 209 PSVVHLLILPNLELYLKFLEPEMLL 233 (408)
Q Consensus 209 ~~aVr~lllP~L~~y~~~Le~~l~~ 233 (408)
..++ ..++.....+-..|.+
T Consensus 291 ----~DLL-~~Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 291 ----KEFV-EDKDGLCRKLVSLLSS 310 (800)
T ss_dssp ----GGGC-CCHHHHHHHHHHHTTC
T ss_pred ----HHHH-HHHHHHHHHHHhhcCC
Confidence 3322 2355555555555543
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.31 E-value=1e+02 Score=34.83 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=54.2
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHh
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 227 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 227 (408)
...|.+|.-|+--|+.||- |+ + +++++.+|.+...|+ ...+..||+.+|.-+|...-.. .-|++..+.+.|
T Consensus 623 ~~d~~VR~gAalALGli~a--Gn--~--~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna-~~~rva~~l~~L 693 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACA--GK--G--LQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEK-LNPQVADINKNF 693 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTS--SS--C--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTT-TCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcc--CC--C--cHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccc-cchHHHHHHHHH
Confidence 4568999999999999872 22 2 378999998888765 4667789999999998755444 336666655555
Q ss_pred hHhh
Q 015383 228 EPEM 231 (408)
Q Consensus 228 e~~l 231 (408)
....
T Consensus 694 ~~~~ 697 (963)
T 4ady_A 694 LSVI 697 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 74
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=36.51 E-value=1e+02 Score=34.28 Aligned_cols=144 Identities=9% Similarity=0.089 Sum_probs=90.8
Q ss_pred ccchhhHHHhHHHHhhcc-----CCHHHHHHHHHHHHHH---hcCCCcc---cccchhhhHHHHHHHHhccccCCCCCCc
Q 015383 81 PLVPYFTYFISEEVTRSL-----KNFSLLFALMRVARSL---LRNPHIH---IEPYLHQMMPSVITCLVSKRLGNRFSDN 149 (408)
Q Consensus 81 qLLPYfv~FIse~V~~nl-----~nl~~L~~LLrmv~AL---L~Np~L~---IepYLHqLlPsvLTCll~k~L~~~~~~~ 149 (408)
..++|...+|..-+...+ .++..+...+....++ +.|.... ..+++.++++.+..+ +...+ +.+.
T Consensus 432 ~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~l-l~s~i---~~~~ 507 (980)
T 3ibv_A 432 LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALV-TTSQV---CRHP 507 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHH-HHSST---TTCC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHH-HhCCC---CCCC
Confidence 344433334544443332 2466666666665554 3332222 346777777644444 33333 2367
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH--HhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHh
Q 015383 150 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLH--AFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 227 (408)
Q Consensus 150 hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k--~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~L 227 (408)
|-.+|..+-.++++-++-+.. .+..-+.++..+.. .+.|+++... .-|...+..|-.+ .+..+.|++..++..+
T Consensus 508 hp~V~~~~~~~l~rys~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~--~~a~~af~~f~~~-~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 508 HPLVQLLYMEILVRYASFFDY-ESAAIPALIEYFVGPRGIHNTNERVR--PRAWYLFYRFVKS-IKKQVVNYTESSLAML 583 (980)
T ss_dssp CHHHHHHHHHHHHHTGGGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTH--HHHHHHHHHHHHH-TTTTCSSSHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHhccccccCCChhHH--HHHHHHHHHHHHH-hhHHhhhHHHHHHHHH
Confidence 999999999999998877754 46777788888877 7766664443 4456666666554 4556789999999999
Q ss_pred hHhhh
Q 015383 228 EPEML 232 (408)
Q Consensus 228 e~~l~ 232 (408)
++.+.
T Consensus 584 ~~lL~ 588 (980)
T 3ibv_A 584 GDLLN 588 (980)
T ss_dssp TGGGC
T ss_pred HHhhc
Confidence 98876
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=32.30 E-value=58 Score=26.06 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccch
Q 015383 47 QLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL 126 (408)
Q Consensus 47 QlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYL 126 (408)
+.+...+.+.+. .++...|..|+..|..-..- . +|.++..+.+ .|... -...+++|-.-..
T Consensus 11 ~~~~~~l~~~L~-~~~~~vR~~A~~~L~~~~~~-~-~~~L~~~L~d------~~~~v---R~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMA-DENKWVRRDVSTALSRMGDE-A-FEPLLESLSN------EDWRI---RGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CC-SSCCCSSSSCCSSTTSCSST-T-HHHHHHGGGC------SCHHH---HHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhc-CCCHHHHHHHHHHHHHhCch-H-HHHHHHHHcC------CCHHH---HHHHHHHHHhcCC-------
Confidence 345555555544 34455566555555432211 1 3444433321 12221 2334445544321
Q ss_pred hhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh
Q 015383 127 HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 206 (408)
Q Consensus 127 HqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~a 206 (408)
...+|.++.++ .+.+|.+|..|+..|+.+. .++.+..|.+.+.|++ ....+-|+.+|..
T Consensus 72 ~~a~~~L~~~L---------~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~--~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLL---------EDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGT--GFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHH---------HHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCC--THHHHHHHHHGGG
T ss_pred HHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCC--HHHHHHHHHHHHh
Confidence 24567777766 1567899999999999874 2466777888876644 4556666666543
No 76
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=31.11 E-value=23 Score=29.45 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=48.5
Q ss_pred chhhhhhhh-hhhhccccchhhhHHHHHHHHhhhccCccchhHHHHHHhcc-------ccccccCCcccc
Q 015383 344 SMLRHLQNE-KMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGE-------SMFSFTRKSELY 405 (408)
Q Consensus 344 ~~~~~~~~~-~~~~~~~~~~~~~~s~~l~q~Wkdd~~~g~ll~sl~elfGe-------~il~Fip~~E~s 405 (408)
++++++... ..-+..-++.-+.-=|.|=+-|+..++.-+.-..|.||||+ +|=||||...+-
T Consensus 13 ~a~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~Di~ 82 (98)
T 4fqn_A 13 SATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQ 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGGGGGGGGGGGSCHHHHH
T ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHHHHHhhccCCCChhhHH
Confidence 555666665 55566666777777788889999999999999999999998 488999976543
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=30.18 E-value=3.4e+02 Score=25.60 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhh
Q 015383 152 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 231 (408)
Q Consensus 152 ~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 231 (408)
.+|=--+..|..|.+. ||.+-+-|.+-+...+.+|+ -.-..-|+-=+.++|.+-.|- +.|+|+.+...|..
T Consensus 122 kikIn~~yaLeeIara----nP~l~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~y-v~PfLprL~aLL~D-- 192 (253)
T 2db0_A 122 KTKINVSYALEEIAKA----NPMLMASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFKY-VNPFLPRIINLLHD-- 192 (253)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHHH-HGGGHHHHHGGGGC--
T ss_pred cceecHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCccc-cCcchHHHHHHHcC--
Confidence 6777778888888876 78999999999999988665 455667888888999888876 78999988877643
Q ss_pred hhHhhhhhhhHhHH
Q 015383 232 LLEKQKNEMKRHEA 245 (408)
Q Consensus 232 ~~~~~~~~~~r~ea 245 (408)
.|+++|.-|
T Consensus 193 -----~deiVRaSa 201 (253)
T 2db0_A 193 -----GDEIVRASA 201 (253)
T ss_dssp -----SSHHHHHHH
T ss_pred -----cchhhhHHH
Confidence 456777655
No 78
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=29.65 E-value=2.9e+02 Score=28.08 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCC-CCcchHHH
Q 015383 100 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-VYQNLQSR 178 (408)
Q Consensus 100 nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~-sy~~L~pR 178 (408)
+.......+.....|..+..-. .....++|.++..+- .+.+.+|+.|+..|..|+..... .-.-.+..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 3445555666666666554221 233467777666551 34578999999999999864110 00001122
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhh
Q 015383 179 VTRTLLHAFLDPTKSLSQHYGAIQGLAAL 207 (408)
Q Consensus 179 I~~tL~k~llDp~k~l~t~YGAI~GL~aL 207 (408)
.+..|.+.+.+.........-|+.+|..|
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 34455555544322234555666666665
No 79
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=28.74 E-value=2.3e+02 Score=31.04 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred cccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHH
Q 015383 80 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159 (408)
Q Consensus 80 ~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~ 159 (408)
+..+|.|++... -.+...-......+..|..++...-.--=+-.+|+++.++ .......|+.||.
T Consensus 494 aGaVp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL---------~s~~~~~k~~Aa~ 558 (810)
T 3now_A 494 EGITTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMA---------LEGTEKGKRHATQ 558 (810)
T ss_dssp TTHHHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHH---------HSSCHHHHHHHHH
T ss_pred CcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---------ccCCHHHHHHHHH
Q ss_pred HHHHHHHHhCCCCcchHHHH---HHHHHHHhcCCCCCcchhhhHHHHHHhh--CHHHHHHhhccchHHHHHHhhHhhhhH
Q 015383 160 LIASICTRFGHVYQNLQSRV---TRTLLHAFLDPTKSLSQHYGAIQGLAAL--GPSVVHLLILPNLELYLKFLEPEMLLE 234 (408)
Q Consensus 160 LL~~I~~kf~~sy~~L~pRI---~~tL~k~llDp~k~l~t~YGAI~GL~aL--G~~aVr~lllP~L~~y~~~Le~~l~~~ 234 (408)
.|+.||..-......-..++ +..|.+ |+++..+.-.++=|+.+|..| +++..+..++= ...+..|...+..
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~-LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s- 634 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLN-LLQQDCTALENFESLMALTNLASMNESVRQRIIK--EQGVSKIEYYLME- 634 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHH-TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHS-
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcC-
Q ss_pred hhhhhhhHhHHHHHHHHH
Q 015383 235 KQKNEMKRHEAWRVYGAL 252 (408)
Q Consensus 235 ~~~~~~~r~ea~~V~gaL 252 (408)
.+..+|..|..+.+-|
T Consensus 635 --~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 635 --DHLYLTRAAAQCLCNL 650 (810)
T ss_dssp --CCTTHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHH
No 80
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=26.36 E-value=4.8e+02 Score=25.78 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhh------hcCCcc-----ccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 015383 50 FDKIRELTVSRSNSTVFKQALLSLA------MDSGLH-----PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 118 (408)
Q Consensus 50 f~kIteall~~~d~~~r~~AL~sL~------tD~GL~-----qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np 118 (408)
.+.+++.+.++ |.+.+..|+..++ .+|-++ ..+|.|++|+... .+.............|..+.
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~ 151 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 151 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCC
Confidence 56777777654 4444555655443 344443 3578888887532 12223333344444444433
Q ss_pred Cccc-ccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHH-----HHHHHHHhcCCCC
Q 015383 119 HIHI-EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-----TRTLLHAFLDPTK 192 (408)
Q Consensus 119 ~L~I-epYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI-----~~tL~k~llDp~k 192 (408)
.-+- ...-+-.+|.++.++-+ .+-.+|+.|+..|+.|+.. .+..+..| +..|...+.++..
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s---------~~~~v~e~A~~aL~nLa~~----~~~~r~~i~~~g~i~~Ll~lL~~~~~ 218 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLAS---------PHAHISEQAVWALGNIAGA----GSAFRDLVIKHGAIDPLLALLAVPDL 218 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC---------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTCHHHHHHTTCSSCG
T ss_pred HHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHhcc----CHHHHHHHHHcCCcHHHHHHHhccch
Confidence 2221 11223467877775522 2458999999999999742 12333333 4456666654432
Q ss_pred C---cchhhhHHHHHHhh
Q 015383 193 S---LSQHYGAIQGLAAL 207 (408)
Q Consensus 193 ~---l~t~YGAI~GL~aL 207 (408)
+ ....-.+.+.|..+
T Consensus 219 ~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 219 STLACGYLRNLTWTLSNL 236 (529)
T ss_dssp GGSCHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 2 22233455555544
No 81
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.44 E-value=1.1e+02 Score=26.70 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhh---CHHHHHHhhccchHHHHHHhhHhhhh--
Q 015383 159 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLL-- 233 (408)
Q Consensus 159 ~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~-- 233 (408)
.++..|++---++....-..|+..|.+.|.+. +....|=|+.-|..| |++-+..-+--|+..+-...+-.-.+
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp 107 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDP 107 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCc
Confidence 34455554322222234478888888888764 455888888888876 77777776777765543333211111
Q ss_pred --HhhhhhhhHhHHHHHHHHHH
Q 015383 234 --EKQKNEMKRHEAWRVYGALQ 253 (408)
Q Consensus 234 --~~~~~~~~r~ea~~V~gaLl 253 (408)
.+.....+|..|..+..+|.
T Consensus 108 ~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 108 LKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHh
Confidence 13345667888877776654
No 82
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=23.19 E-value=3.4e+02 Score=30.71 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=75.5
Q ss_pred hHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcc--------hHHHHHHHHHHHhcC-CCCCcchhhh
Q 015383 129 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--------LQSRVTRTLLHAFLD-PTKSLSQHYG 199 (408)
Q Consensus 129 LlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~--------L~pRI~~tL~k~llD-p~k~l~t~YG 199 (408)
++++++.-++..- .+.|=.+.+.|+..+..||.+|+...-+ .-..|++.+.+++.+ +.+...+.|.
T Consensus 563 ~L~~vl~~L~~~m-----~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lye 637 (1073)
T 3gjx_A 563 FLKTVVNKLFEFM-----HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYE 637 (1073)
T ss_dssp HHHHHHHHHHHHT-----TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4556666666431 2445589999999999999999876533 335577777777544 3446778888
Q ss_pred HHHHHH-hhCHH-----HHHHhhccchHHHHHHhhHhhhhH---hhhhhhhHh-HHHHHHHHHHHhhhhhhhhhhhh
Q 015383 200 AIQGLA-ALGPS-----VVHLLILPNLELYLKFLEPEMLLE---KQKNEMKRH-EAWRVYGALQCAAGLCVYDRLKT 266 (408)
Q Consensus 200 AI~GL~-aLG~~-----aVr~lllP~L~~y~~~Le~~l~~~---~~~~~~~r~-ea~~V~gaLl~A~g~~~~~~~~~ 266 (408)
|+-.+. +.|.+ .++.++-|.+..+...++..-.+. +..+..++. -..++..+.-.++|..+..-+..
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~ 714 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGR 714 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHH
Confidence 877655 44543 356655555555545544321110 001111222 33445555556666655554443
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=22.24 E-value=91 Score=29.47 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHH-HHhhCHHHHHHhhccch
Q 015383 147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQG-LAALGPSVVHLLILPNL 220 (408)
Q Consensus 147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~G-L~aLG~~aVr~lllP~L 220 (408)
.||-|..|..|-.++..|.+.|..-|.-+...++-.+.| ++.-|+++-.---.| ++..-|+-|+.+ +|-+
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~Pe~v~~v-Vp~l 112 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKSM-IPVL 112 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHCHHHHHHH-HHHH
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhCHHHHHhh-HHHH
Confidence 689999999999999999988766666555555555444 455666444433333 445588888884 4533
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.90 E-value=3.4e+02 Score=30.55 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=45.3
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHH--hhCHH
Q 015383 148 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA--ALGPS 210 (408)
Q Consensus 148 ~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~--aLG~~ 210 (408)
|.+-.+|..|+.-|+.|--.-.+..+.=-..+.+.|.+...|......+.|||..++. .+|..
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 6677899999999999976544432222344567778888888888889999988654 44553
No 85
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Probab=20.20 E-value=63 Score=27.05 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=46.9
Q ss_pred eeeecCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccc------------cchhhHHHhHHHHhhcc
Q 015383 31 SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHP------------LVPYFTYFISEEVTRSL 98 (408)
Q Consensus 31 ~v~vKp~vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~q------------LLPYfv~FIse~V~~nl 98 (408)
...++|..+. +..+.-.++. ++.+.+-..++..|.+.++.|..+.|+.. ---.+..|++++++..|
T Consensus 9 ~y~~~P~~qq-~A~qva~~v~-lt~~al~~~~~~~R~~l~~~l~~~~Gi~i~~~~~~~~~~~~~~~~~~~~ls~~m~~~L 86 (127)
T 3te8_A 9 VIEREPRAQR-VALQLVAIVK-LTRTALLYSDPDLRRALLQDLESNEGVRVYPREKTDKFKLQPDESVNRLIEHDIRSRL 86 (127)
T ss_dssp HHHHSCCCCH-HHHHHHHHHH-HHHHHHHTBCGGGHHHHHHHHHHHHCCEEEECCTTCCEEECCCCHHHHHHHHHHHHHH
T ss_pred eeeeCcHHHH-HHHHHHHHHh-hhhhhHhhCCHHHHHHHHHHhcccCCcEEcCCCccccccccccchHHHHHHHHHHHHc
Confidence 4566777766 8888888888 66653224566778888899888877752 11234589999998877
Q ss_pred C
Q 015383 99 K 99 (408)
Q Consensus 99 ~ 99 (408)
.
T Consensus 87 G 87 (127)
T 3te8_A 87 G 87 (127)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=20.17 E-value=4.8e+02 Score=24.61 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCCCccccc
Q 015383 45 ELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEP 124 (408)
Q Consensus 45 ElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np~L~Iep 124 (408)
|--.+.=.+++-+ |+..+..|+.+-+.|+.=..+. =..++..++.+++++ +|...-.-.|..+.+|+.+-.+. |
T Consensus 129 ea~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~-~~~~v~~~l~~g~ks--KN~R~R~e~l~~l~~li~~~G~~--~ 202 (266)
T 2of3_A 129 EVSAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVV-GPLKMTPMLLDALKS--KNARQRSECLLVIEYYITNAGIS--P 202 (266)
T ss_dssp HHHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHCSG--G
T ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHhcCCC--c
Confidence 3344555555544 4444556665555554433331 122356667777766 57777777888888888876665 2
Q ss_pred chhhhH---HHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCC
Q 015383 125 YLHQMM---PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 170 (408)
Q Consensus 125 YLHqLl---PsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~ 170 (408)
...+ |.|..|+ + |..=.+|+-|-+.+..+++.-|+
T Consensus 203 --~~~l~~~~~ia~ll-----~----D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 203 --LKSLSVEKTVAPFV-----G----DKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp --GGGGCHHHHHGGGG-----G----CSSHHHHHHHHHHHHHHHHHHTT
T ss_pred --cccccchHHHHHHH-----c----CCCHHHHHHHHHHHHHHHHHhhH
Confidence 2334 5444443 2 23348999999999999988776
Done!