BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015384
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
          Length = 301

 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 1   MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLCITFGAPLIGDKGL 47
           + VTGH LGG+ A LF + L     +     PL +T G P++G+ G 
Sbjct: 156 IAVTGHSLGGAAALLFGINL-----KVNGHDPLVVTLGQPIVGNAGF 197


>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
           Of An Oil-Water Interface: Crystallographic Studies Of
           Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
           Delemar
 pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
           Of An Oil-Water Interface: Crystallographic Studies Of
           Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
           Delemar
 pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
 pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
 pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
          Length = 269

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 1   MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLCITFGAPLIGD 44
           +IVTGH LGG+ A L  + L +   R   K     T G P +G+
Sbjct: 139 VIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRVGN 182


>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
 pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
          Length = 342

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 245 SFRTRWLYGGTNYRRMVEPLDIADYYKENGKKDYKANGRSEHYIKLEKWLEEAGKPLSS 303
           S +  ++ GG    RM+E L+ A     NGK  YK    S H + L + +   G PL +
Sbjct: 223 SQKVSYIMGGKLTNRMIEDLNNA----VNGKSKYKMTYYSGHALTLLEVMGTLGVPLDT 277


>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
 pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
          Length = 342

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 245 SFRTRWLYGGTNYRRMVEPLDIADYYKENGKKDYKANGRSEHYIKLEKWLEEAGKPLSS 303
           S +  ++ GG    RM+E L+ A     NGK  YK    S H + L + +   G PL +
Sbjct: 223 SQKVSYIMGGKLTNRMIEDLNNA----VNGKSKYKMTYYSGHALTLLEVMGTLGVPLDT 277


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,420,847
Number of Sequences: 62578
Number of extensions: 511385
Number of successful extensions: 1306
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 12
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)