BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015384
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6JJF0|GLPK_OLICO Glycerol kinase OS=Oligotropha carboxidovorans (strain ATCC 49405 /
DSM 1227 / OM5) GN=glpK PE=3 SV=1
Length = 498
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 298 GKPLSSQVITRKQNVSASLTEDSCFWAHVEEAL--IQC-ELLRNGQEEESTRKKLIEFEE 354
G P++ + I Q A+ +CF + ++ C LL G +++ KL+
Sbjct: 231 GGPIAVRGIAGDQQ--AATVGQACFAPGMMKSTYGTGCFALLNTGATAVASKNKLLTTIA 288
Query: 355 YVMEQIKEYAVSPEIFLGGSSFMQWWKDYEQIVGTSYKS 393
Y + ++ YA+ IF+ GS+ +QW +D ++ T++ S
Sbjct: 289 YQLNGVRTYALEGSIFVAGSA-VQWLRDGLHLIKTAHDS 326
>sp|Q6LPE2|KCY_PHOPR Cytidylate kinase OS=Photobacterium profundum GN=cmk PE=3 SV=2
Length = 228
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 96 WHMIDYGAVVKRLMSTVRFKGISQLSEMIECPLQAGIVLQLQA--------------IGL 141
WH++D GA+ + L G+ SE + PL A + +Q +A G
Sbjct: 31 WHLLDSGAIYRVLALAAIHHGVDLESEDVLVPLAAHLDVQFKAEGDLVKVILEGEDVSGE 90
Query: 142 NRRQQSGDSNPLIAKLEKCEEAFVSKRKMGFDPSKKLNKRKEDMAKLEWYKKVSK 196
R++++G + +A L + EA + +R+ F + L DM + + + K
Sbjct: 91 LRKEETGMTASKVAALPRVREALL-RRQRAFSNAPGLVADGRDMGTVVFPNAIVK 144
>sp|Q03VG8|MUTS2_LEUMM MutS2 protein OS=Leuconostoc mesenteroides subsp. mesenteroides
(strain ATCC 8293 / NCDO 523) GN=mutS2 PE=3 SV=1
Length = 800
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPG----TKRPLCITFGAPLIGDKGLQQAISQNL 55
+I+TG GG ++ TL LL+ + + G T++P I + D G +Q+I QNL
Sbjct: 332 IIITGPNTGGKTITIKTLGLLQLMAQSGLFITTRQPSTIGIFDEVFADIGDEQSIEQNL 390
>sp|Q891U1|MUTS2_CLOTE MutS2 protein OS=Clostridium tetani (strain Massachusetts / E88)
GN=mutS2 PE=3 SV=1
Length = 786
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPGTKRPL----CITFGAPLIGDKGLQQAISQNLM 56
+I+TG GG +L TL L+ + G P I F + D G +Q+I Q+L
Sbjct: 328 LIITGPNTGGKTVTLKTLGLIHIMGLSGLLIPAKENSTIAFFEEIFADIGDEQSIEQSLS 387
Query: 57 WNSDFLHVAASQDLDPEAVSEVLVAMDLEIARNKPPNE 94
S H+ D+ +A + LV D E+ P E
Sbjct: 388 TFSS--HMVNIVDIISKADHKSLVLFD-ELGAGTDPTE 422
>sp|B1MXB4|MUTS2_LEUCK MutS2 protein OS=Leuconostoc citreum (strain KM20) GN=mutS2 PE=3
SV=1
Length = 801
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPG----TKRPLCITFGAPLIGDKGLQQAISQNL 55
+I+TG GG ++ TL +L+ + + G TKRP + + D G +Q+I Q+L
Sbjct: 332 IIITGPNTGGKTITIKTLGILQLMAQSGLFITTKRPSTVGVFHEIFADIGDEQSIEQSL 390
>sp|A4D1P6|WDR91_HUMAN WD repeat-containing protein 91 OS=Homo sapiens GN=WDR91 PE=1 SV=2
Length = 747
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 35 ITFGAPLIGDKGLQQAISQNLMWNSDFLHVAASQDLDPEAVS 76
+ F AP IG KG+ Q + L+W++ + LDPE ++
Sbjct: 523 VDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDPEPIA 564
>sp|Q5R6T6|WDR91_PONAB WD repeat-containing protein 91 OS=Pongo abelii GN=WDR91 PE=2 SV=1
Length = 712
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 35 ITFGAPLIGDKGLQQAISQNLMWNSDFLHVAASQDLDPEAVSEVLVAMD 83
+ F AP IG KG+ Q + L+W++ + LDPE ++ A +
Sbjct: 488 VDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDPEPIAINCTAFN 536
>sp|Q1IMB2|GLPK_KORVE Glycerol kinase OS=Koribacter versatilis (strain Ellin345) GN=glpK
PE=3 SV=1
Length = 498
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 333 CELLRN-GQEEESTRKKLIEFEEYVMEQIKEYAVSPEIFLGGSSFMQWWKDYEQIVGTSY 391
C +L+N G+ T +L+ + + + EYA+ +F+GG + +QW +D ++V +S
Sbjct: 268 CFMLQNTGERAVPTSNRLVTTVAWKIGDVVEYALEGSVFIGG-AVVQWLRDGLRLVRSSG 326
Query: 392 KSQ 394
+ Q
Sbjct: 327 EFQ 329
>sp|C4Z417|MUTS2_EUBE2 MutS2 protein OS=Eubacterium eligens (strain ATCC 27750 / VPI
C15-48) GN=mutS2 PE=3 SV=1
Length = 787
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 1 MIVTGHCLGGSVASLFTLWLLESINRPGTKRPLC----ITFGAPLIGDKGLQQAISQNLM 56
+I+TG GG SL T+ LL + + G P I + D G +Q+I Q+L
Sbjct: 325 LIITGPNTGGKTVSLKTVGLLTLMAQSGLFIPALDHSDIAVFKNIYADIGDEQSIEQSLS 384
Query: 57 WNSDFLHVAASQDLDPEAVSEVLVAMDLEIARNKPPNEQWHMIDYGAVVKRLMSTVRFKG 116
S H+ + + EA LV D EI P E A+ +++ ++ +G
Sbjct: 385 TFSS--HMTNTVKILKEADENCLVLFD-EIGAGTDPTEG------AALAIAILNDLKMRG 435
Query: 117 ISQLS 121
++ ++
Sbjct: 436 VTTMA 440
>sp|P02708|ACHA_HUMAN Acetylcholine receptor subunit alpha OS=Homo sapiens GN=CHRNA1 PE=1
SV=2
Length = 482
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 31 RPLCITFGAPLIGDKGLQQAISQNLMWNSD 60
RP C+T G PL +Q + NL WN D
Sbjct: 86 RPSCVTLGVPLFSHLQNEQWVDYNLKWNPD 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,095,286
Number of Sequences: 539616
Number of extensions: 6413569
Number of successful extensions: 18043
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 18034
Number of HSP's gapped (non-prelim): 39
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)