Query 015385
Match_columns 408
No_of_seqs 185 out of 243
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 2.4E-34 5.3E-39 234.6 7.5 79 204-282 1-80 (80)
2 smart00338 BRLZ basic region l 98.5 2E-07 4.3E-12 72.7 6.4 44 122-165 2-45 (65)
3 PF00170 bZIP_1: bZIP transcri 98.4 3.8E-07 8.2E-12 71.0 5.7 41 123-166 3-43 (64)
4 PF07716 bZIP_2: Basic region 98.3 1.6E-06 3.5E-11 65.7 6.1 41 123-167 3-43 (54)
5 KOG3584 cAMP response element 97.5 9.1E-05 2E-09 73.9 4.5 36 124-162 290-325 (348)
6 PF13801 Metal_resist: Heavy-m 96.7 0.046 1E-06 44.9 12.5 85 284-382 40-124 (125)
7 COG3678 CpxP P pilus assembly/ 96.3 0.049 1.1E-06 50.4 10.8 104 265-390 39-145 (160)
8 PRK12750 cpxP periplasmic repr 96.1 0.26 5.7E-06 45.9 14.6 97 281-392 49-153 (170)
9 PF03131 bZIP_Maf: bZIP Maf tr 95.9 0.0094 2E-07 49.8 3.7 35 124-158 29-63 (92)
10 KOG4343 bZIP transcription fac 93.7 0.11 2.4E-06 56.1 5.7 42 122-166 275-319 (655)
11 KOG0709 CREB/ATF family transc 93.0 0.11 2.3E-06 55.2 4.3 29 125-153 251-279 (472)
12 PRK10455 periplasmic protein; 91.2 2.8 6.1E-05 38.8 10.9 102 262-386 35-140 (161)
13 KOG0837 Transcriptional activa 91.1 0.46 1E-05 47.4 5.9 29 125-153 206-234 (279)
14 PRK12751 cpxP periplasmic stre 90.9 5.9 0.00013 36.9 12.7 102 282-401 54-155 (162)
15 PRK10363 cpxP periplasmic repr 90.6 5 0.00011 37.8 11.9 98 282-400 48-148 (166)
16 PF07813 LTXXQ: LTXXQ motif fa 87.0 3.6 7.8E-05 33.2 7.5 85 282-384 12-96 (100)
17 KOG4005 Transcription factor X 81.3 8.6 0.00019 38.4 8.6 32 122-153 66-97 (292)
18 KOG3119 Basic region leucine z 64.6 15 0.00032 36.5 5.9 24 123-146 192-215 (269)
19 KOG3725 SH3 domain protein SH3 60.1 63 0.0014 33.0 9.2 23 221-243 236-258 (375)
20 KOG4571 Activating transcripti 59.8 34 0.00074 35.0 7.4 50 121-170 222-283 (294)
21 PF13628 DUF4142: Domain of un 54.7 1.4E+02 0.0031 26.0 9.7 94 141-237 30-133 (139)
22 COG4867 Uncharacterized protei 45.6 1.4E+02 0.003 32.6 9.5 119 126-248 228-357 (652)
23 PF14620 YPEB: YpeB sporulatio 41.4 2.4E+02 0.0052 29.4 10.4 118 190-321 22-143 (361)
24 TIGR02889 spore_YpeB germinati 39.6 2.6E+02 0.0056 30.1 10.5 117 190-320 32-152 (435)
25 PF11459 DUF2893: Protein of u 35.6 86 0.0019 25.6 4.8 41 352-392 21-61 (69)
26 PF09789 DUF2353: Uncharacteri 34.2 52 0.0011 34.0 4.2 46 122-167 100-151 (319)
27 PRK11702 hypothetical protein; 31.6 22 0.00047 31.4 0.9 14 138-151 5-18 (108)
28 PF02181 FH2: Formin Homology 30.3 5.1E+02 0.011 26.1 10.6 174 190-394 165-368 (370)
29 KOG2391 Vacuolar sorting prote 28.4 3.5E+02 0.0077 28.6 9.0 26 294-319 244-269 (365)
30 PTZ00446 vacuolar sorting prot 27.7 1.2E+02 0.0025 29.2 5.1 39 128-166 59-98 (191)
31 PF11471 Sugarporin_N: Maltopo 27.6 53 0.0011 26.0 2.3 13 157-169 40-52 (60)
32 PF07445 priB_priC: Primosomal 26.8 2.1E+02 0.0045 26.8 6.5 85 149-241 2-87 (173)
33 cd00223 TOPRIM_TopoIIB_SPO TOP 26.7 68 0.0015 28.9 3.2 39 263-302 89-127 (160)
34 COG3130 Rmf Ribosome modulatio 26.1 17 0.00037 28.3 -0.6 13 261-273 35-47 (55)
35 KOG2202 U2 snRNP splicing fact 23.8 1.3E+02 0.0029 30.3 4.9 60 190-258 77-136 (260)
36 KOG1656 Protein involved in gl 23.2 1.4E+02 0.003 29.4 4.7 35 132-166 58-92 (221)
37 PF07889 DUF1664: Protein of u 22.3 1.9E+02 0.0041 26.2 5.1 21 263-283 21-41 (126)
38 PLN02796 D-glycerate 3-kinase 22.1 1.2E+02 0.0026 31.6 4.4 47 190-240 274-320 (347)
39 PF13586 DDE_Tnp_1_2: Transpos 21.7 38 0.00083 27.4 0.6 19 254-272 44-62 (88)
40 PF00589 Phage_integrase: Phag 20.5 40 0.00087 28.6 0.5 21 263-283 28-48 (173)
41 PF05227 CHASE3: CHASE3 domain 20.1 3.6E+02 0.0079 22.5 6.3 70 157-239 14-85 (138)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=2.4e-34 Score=234.58 Aligned_cols=79 Identities=63% Similarity=1.088 Sum_probs=76.7
Q ss_pred HhHHHHHHHhhccC-CCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhhcCCCchHHHHHHHhh
Q 015385 204 RHIVELRAAVNSHA-GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQ 282 (408)
Q Consensus 204 r~l~ELR~AL~s~~-~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWiGGfRPS~llkLL~~q 282 (408)
|++.|||+|+++|. +|.+|+.||++||+||++||++|+.||++|||++|+|+|+||+|||||||||||||++||||+++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 57999999999998 89999999999999999999999999999999999999999999999999999999999999875
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.54 E-value=2e-07 Score=72.68 Aligned_cols=44 Identities=45% Similarity=0.553 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHH
Q 015385 122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165 (408)
Q Consensus 122 ~~~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel 165 (408)
.|+|-.||+.+||+||++||.|||.|++.||.--..|..-..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L 45 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERL 45 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999444443333333
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.44 E-value=3.8e-07 Score=71.00 Aligned_cols=41 Identities=51% Similarity=0.746 Sum_probs=33.9
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel~ 166 (408)
..|-.+|..+||+|||+||.|||.|+++||. ++..|+.+..
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~ 43 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENE 43 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHH
Confidence 3567899999999999999999999999999 6666665544
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.31 E-value=1.6e-06 Score=65.70 Aligned_cols=41 Identities=46% Similarity=0.639 Sum_probs=34.5
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHHH
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel~~ 167 (408)
|++..||. .||+||++||-|||.|++.||. ++.+|+.+...
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~ 43 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQ 43 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 67889999 9999999999999999999999 55555555443
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=97.52 E-value=9.1e-05 Score=73.91 Aligned_cols=36 Identities=50% Similarity=0.683 Sum_probs=30.7
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHH
Q 015385 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLE 162 (408)
Q Consensus 124 ~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qle 162 (408)
-|-.=||-.||||||.+|-.||-||..||+ |++=||
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence 455678999999999999999999999999 555554
No 6
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=96.74 E-value=0.046 Score=44.91 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q 015385 284 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN 363 (408)
Q Consensus 284 epLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fl~qAD~ 363 (408)
-+||++|...|..+.......-..+-+.+......+...+....+. ...+. ..++.+...-.+...
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D-----------~~~i~---a~~~~~~~~~~~l~~ 105 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPD-----------EAAIE---ALLEEIREAQAELRQ 105 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS------------HHHHH---HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----------HHHHH---HHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999888643221 12233 333455566667778
Q ss_pred HHHHHHHHHHHhcChHHHH
Q 015385 364 LRQQTLQQMHRILTTRQSA 382 (408)
Q Consensus 364 LR~qTL~~m~~ILTprQAA 382 (408)
.|.+++.++..+|||.|=+
T Consensus 106 ~~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 106 ERLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHHHcCCHHHhC
Confidence 9999999999999999865
No 7
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.049 Score=50.40 Aligned_cols=104 Identities=24% Similarity=0.244 Sum_probs=69.8
Q ss_pred hhhcCCCchH---HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchh
Q 015385 265 MWIGGFRSSE---LLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYM 341 (408)
Q Consensus 265 LWiGGfRPS~---llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~ 341 (408)
+|.|+|-|=- .++.| +||++|..+|..+.+.-+ .++.+-+..-...+-+.+.++...+
T Consensus 39 ~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~----------- 99 (160)
T COG3678 39 HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE----------- 99 (160)
T ss_pred ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH-----------
Confidence 5777776653 23323 799999999988877766 4444444444455555554322211
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 015385 342 GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAIND 390 (408)
Q Consensus 342 ~qm~~Am~KL~~Le~fl~qAD~LR~qTL~~m~~ILTprQAArfLlAl~e 390 (408)
+.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.++
T Consensus 100 ---aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~ 145 (160)
T COG3678 100 ---AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ 145 (160)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1122555678888899999999999999999999999776544433
No 8
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=96.05 E-value=0.26 Score=45.86 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=59.1
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHH
Q 015385 281 NQLEPLTEQQLVGIYNLQQSSQQAEDA--------LSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG 352 (408)
Q Consensus 281 ~qLepLTeqQL~~I~~LqqstqqaEdA--------Lsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~ 352 (408)
..| +||++|...|..++...+.+=.+ ....|....+.+.+.+.+++..+ ..+....++
T Consensus 49 ~~L-~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDe-----------aavral~~~-- 114 (170)
T PRK12750 49 RQL-DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDE-----------AAANDLAKQ-- 114 (170)
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCH-----------HHHHHHHHH--
Confidence 456 79999999999988777664333 45556666666667665433321 011111111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 015385 353 TLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYF 392 (408)
Q Consensus 353 ~Le~fl~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~ 392 (408)
+..--.+.---|.++.++++.||||-|=+.|---..+..
T Consensus 115 -~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r~ 153 (170)
T PRK12750 115 -MVEKQVERRVKMLEKRHQMLSILTPEQKAKFQELQQERM 153 (170)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111111222236778999999999999999987655543
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=95.85 E-value=0.0094 Score=49.81 Aligned_cols=35 Identities=34% Similarity=0.367 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHH
Q 015385 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 158 (408)
Q Consensus 124 ~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL 158 (408)
=|-.||...||.||++||.||+.++..||.....|
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l 63 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQL 63 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999855444
No 10
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=93.66 E-value=0.11 Score=56.05 Aligned_cols=42 Identities=43% Similarity=0.593 Sum_probs=36.7
Q ss_pred CCHHHH---HHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 015385 122 GDQKTL---RRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (408)
Q Consensus 122 ~~~k~~---rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel~ 166 (408)
.|+|++ -|...|||-|--||.|||-|++-||. +|..|++|=+
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene 319 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENE 319 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 478775 47899999999999999999999999 8888877766
No 11
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=93.04 E-value=0.11 Score=55.22 Aligned_cols=29 Identities=45% Similarity=0.693 Sum_probs=27.5
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q 015385 125 KTLRRLAQNREAARKSRLRKKAYVQQLES 153 (408)
Q Consensus 125 k~~rrLaqnreaArksrlrkkaYvqqLe~ 153 (408)
|-.||...|-+-|--||.|||-||.+||+
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~ 279 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLES 279 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhh
Confidence 55699999999999999999999999999
No 12
>PRK10455 periplasmic protein; Reviewed
Probab=91.19 E-value=2.8 Score=38.79 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=57.1
Q ss_pred hhhhhhcC---CCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcc
Q 015385 262 RCFMWIGG---FRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNV 337 (408)
Q Consensus 262 R~FLWiGG---fRPS~llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqslAd~la~~~~~~~G~~~~v 337 (408)
.+.+|-|| ..+..+| ..| +||++|...|..|.+..+..-...+ +..+.++ +.+.++...
T Consensus 35 ~~~~~~~~~~g~~~~~m~----~~L-~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~FD-------- 97 (161)
T PRK10455 35 KPMMHHKGKFGPHHDMMF----KGL-NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTFD-------- 97 (161)
T ss_pred CccccCCCCCCchhhhhh----hhC-CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCccC--------
Confidence 44577653 4344443 445 7999999999988777665533222 2333333 223322211
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHH
Q 015385 338 ANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALL 386 (408)
Q Consensus 338 ~~~~~qm~~Am~KL~~Le~fl~qAD~LR~qTL~~m~~ILTprQAArfLl 386 (408)
...+...++++. ..-.+.--.|.++-.+|..||||-|=+.|=-
T Consensus 98 ---eaavra~~~k~~---~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~~ 140 (161)
T PRK10455 98 ---KAKAEAQITKME---AQRKARMLAHMETQNKIYNVLTPEQKKQFNA 140 (161)
T ss_pred ---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 111222223332 2222333368889999999999999998753
No 13
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=91.05 E-value=0.46 Score=47.43 Aligned_cols=29 Identities=45% Similarity=0.504 Sum_probs=24.3
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q 015385 125 KTLRRLAQNREAARKSRLRKKAYVQQLES 153 (408)
Q Consensus 125 k~~rrLaqnreaArksrlrkkaYvqqLe~ 153 (408)
|..|.=+.|||||+|||.||---|.+||.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEd 234 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLED 234 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44566688999999999999888888876
No 14
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=90.88 E-value=5.9 Score=36.89 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=62.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 015385 282 QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQA 361 (408)
Q Consensus 282 qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fl~qA 361 (408)
.| +||++|...|-.+.+..+....... .+ .-+.+-+.+.+++..+ ..+...+++.. ..-..-
T Consensus 54 ~l-~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDe-----------aAvra~~~kma---~~~~e~ 115 (162)
T PRK12751 54 GI-NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDE-----------AAVRAQAEKMS---QNQIER 115 (162)
T ss_pred cC-CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCH-----------HHHHHHHHHHH---HHHHHH
Confidence 44 7999999999888877776532111 11 2223334444333321 11222223322 222222
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhccc
Q 015385 362 DNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSL 401 (408)
Q Consensus 362 D~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLRaLssl 401 (408)
--.+.++.++|+.+|||-|-+.|=--.-+....+|.+..+
T Consensus 116 ~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~~~~~ 155 (162)
T PRK12751 116 HVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQKPAA 155 (162)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2357788899999999999999998888888888886643
No 15
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=90.62 E-value=5 Score=37.75 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=58.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHH--HHHHHH
Q 015385 282 QLEPLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG--TLEGFL 358 (408)
Q Consensus 282 qLepLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~--~Le~fl 358 (408)
.| +||++|...|..|.+.-+.+...++ .++++++ +.+.++.... ..+....+|+. ..+.-|
T Consensus 48 gL-dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~FDE-----------aavra~a~kma~~~~e~~V 111 (166)
T PRK10363 48 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENFDE-----------NAVRAQAEKMAQEQVARQV 111 (166)
T ss_pred CC-CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCCCH-----------HHHHHHHHHHHHHHHHHHH
Confidence 44 7999999999999988876644443 2344443 2233222211 11222223332 122223
Q ss_pred HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcc
Q 015385 359 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSS 400 (408)
Q Consensus 359 ~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLRaLss 400 (408)
-|.++-++|..||||-|-+.|=--.-+....+|.++.
T Consensus 112 -----em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~ 148 (166)
T PRK10363 112 -----EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQ 148 (166)
T ss_pred -----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667788999999999999996655555666666654
No 16
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=87.02 E-value=3.6 Score=33.17 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=43.9
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 015385 282 QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQA 361 (408)
Q Consensus 282 qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fl~qA 361 (408)
.| +||++|...|..|....+..-..+....+.+...-.+.. + .+... ++.+.+.+...-.+.
T Consensus 12 ~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~----~~~~~~~~~~~~~~~ 73 (100)
T PF07813_consen 12 EL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRDPSF------------D-EAAPE----ALAAMAEMMELRAEM 73 (100)
T ss_dssp TS---THHHHHHHHHHHHHHCTTS------HHHHHHHHHSS---------------HHHHH----HHH--HHCHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhccccC------------C-hhHHH----HHHHHHHHHHHHHHH
Confidence 44 599999999999998887776666211222111111000 0 00011 112223334444455
Q ss_pred hHHHHHHHHHHHHhcChHHHHHH
Q 015385 362 DNLRQQTLQQMHRILTTRQSARA 384 (408)
Q Consensus 362 D~LR~qTL~~m~~ILTprQAArf 384 (408)
-..|..+...+..||||-|=+.|
T Consensus 74 ~~~~~~~~~~~~~vLt~eQk~~~ 96 (100)
T PF07813_consen 74 MEERAKAQHALYAVLTPEQKEKF 96 (100)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Confidence 55678889999999999998776
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.35 E-value=8.6 Score=38.38 Aligned_cols=32 Identities=41% Similarity=0.476 Sum_probs=29.5
Q ss_pred CCHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q 015385 122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLES 153 (408)
Q Consensus 122 ~~~k~~rrLaqnreaArksrlrkkaYvqqLe~ 153 (408)
...|++||=-.||=||..+|=||||-...+|-
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~ 97 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEY 97 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 36799999999999999999999999888886
No 18
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.63 E-value=15 Score=36.55 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=20.5
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHH
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKA 146 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkka 146 (408)
|++-..|...|=+|+||||...|.
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~ 215 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQ 215 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHH
Confidence 677788999999999999987664
No 19
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=60.06 E-value=63 Score=32.99 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhh
Q 015385 221 ELRTIVDNVTSHFDEIFRLKGIA 243 (408)
Q Consensus 221 eLr~LVd~~lsHY~eyfr~Ks~A 243 (408)
=|+..|+.-|.-|.+-|+.-..+
T Consensus 236 CL~dFVeaQmtyYAQcyq~MlDL 258 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQLMLDL 258 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999988875433
No 20
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=59.84 E-value=34 Score=34.95 Aligned_cols=50 Identities=30% Similarity=0.394 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHhhHHH-HHHhhhhHHHHHHHHHhh-----------HhHHhhHHHHHHHHhh
Q 015385 121 SGDQKTLRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRARQ 170 (408)
Q Consensus 121 ~~~~k~~rrLaqnrea-ArksrlrkkaYvqqLe~s-----------r~kL~qleqel~~ar~ 170 (408)
..+.|++||=+|+|.+ |-.=|-||||=-+.||.. |.++..||.|++.-||
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888877765 888899999998888753 3344557788776664
No 21
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=54.71 E-value=1.4e+02 Score=26.02 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHhhHhHHhhHHHHHH-HHhhhccccc-CCCCCCCC-----CC-Cc-hhHHHHHHHHHHHHhHh-HHHHH
Q 015385 141 RLRKKAYVQQLESSRLKLTQLEQELQ-RARQQGIFIS-SSGDQSHS-----MS-GN-AAFDVEYSRWLEEHNRH-IVELR 210 (408)
Q Consensus 141 rlrkkaYvqqLe~sr~kL~qleqel~-~ar~qg~~~~-~~~~~~~~-----~~-~~-~~F~~~Y~~WleEq~r~-l~ELR 210 (408)
.-.=|+|-+.+.+ --.++.++|. -|.+.|+-+. ......+. +. -+ ..||..|-..+..-++. +..+.
T Consensus 30 ~~~Vk~~A~~~~~---dh~~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~~~ 106 (139)
T PF13628_consen 30 SPEVKAFAQQMVE---DHTQANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSGSAFDRAYLDAQIKAHEKALALFE 106 (139)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999888 4455566664 4567888886 32211110 11 12 39999998877665555 55555
Q ss_pred HHhhccCCCchHHHHHHHHHHhHHHHH
Q 015385 211 AAVNSHAGDTELRTIVDNVTSHFDEIF 237 (408)
Q Consensus 211 ~AL~s~~~D~eLr~LVd~~lsHY~eyf 237 (408)
...-....|.+|+.++...+.-...+.
T Consensus 107 ~~~~~~~~~~~lk~~a~~~lp~l~~hl 133 (139)
T PF13628_consen 107 KQLAASGKDPELKAFAQETLPVLEAHL 133 (139)
T ss_pred HHhhccCCCHHHHHHHHHHhHHHHHHH
Confidence 535555678899998888776555444
No 22
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=45.62 E-value=1.4e+02 Score=32.64 Aligned_cols=119 Identities=24% Similarity=0.227 Sum_probs=65.5
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhH-hHHhh---HHHHHHHHh------hhcccccCCCCCCCCCCCchhHHHHH
Q 015385 126 TLRRLAQNREAARKSRLRKKAYVQQLESSR-LKLTQ---LEQELQRAR------QQGIFISSSGDQSHSMSGNAAFDVEY 195 (408)
Q Consensus 126 ~~rrLaqnreaArksrlrkkaYvqqLe~sr-~kL~q---leqel~~ar------~qg~~~~~~~~~~~~~~~~~~F~~~Y 195 (408)
.+--||- .+|+-||.+ --+-|+|++. +||.| +--+|+++- -||+--+-.-|++..+|+...|.+--
T Consensus 228 l~d~laA--R~aaaSrf~--nslsqeqr~ELM~l~qqAfgsp~l~~~l~~l~~~lQG~rp~~dwDgs~qfSgD~~fg~g~ 303 (652)
T COG4867 228 LLDSLAA--RAAAASRFR--NSLSQEQRDELMALAQQAFGSPALMRALDRLDAHLQGARPGEDWDGSQQFSGDNPFGMGE 303 (652)
T ss_pred HHHHHHH--HHHHHHHHh--hhhhHHHHHHHHHHHHHHhCCHHHHHHHhhhhhhhhccCCCCCCCcccCcCCCCccccch
Confidence 3444443 367788888 4577888765 45544 233455433 26654433334444466555666554
Q ss_pred HHHHHHHhHhHHHHHHHh-hccCCCchHHHHHHHHHHhHHHHHHHHhhhhccch
Q 015385 196 SRWLEEHNRHIVELRAAV-NSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADV 248 (408)
Q Consensus 196 ~~WleEq~r~l~ELR~AL-~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DV 248 (408)
+.=-+..--.+..|-.+| +++..|..|..++...+..-..--+.....-++|+
T Consensus 304 gt~A~~d~aeleqLaEqLs~s~~~d~dlda~~rqLgD~aavda~tlaeleral~ 357 (652)
T COG4867 304 GTQALADIAELEQLAEQLSQSYPGDVDLDALARQLGDQAAVDARTLAELERALV 357 (652)
T ss_pred hhHHHhhhhhHHHHHHHHhccCccccchHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 332222222234444455 46777888988888888776555444444444443
No 23
>PF14620 YPEB: YpeB sporulation
Probab=41.39 E-value=2.4e+02 Score=29.36 Aligned_cols=118 Identities=21% Similarity=0.345 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHhhcc--CC-CchHHHHHHHHHHhHHHHHHHHhhhhccchhhh-hcCCCcchHhhhhh
Q 015385 190 AFDVEYSRWLEEHNRHIVELRAAVNSH--AG-DTELRTIVDNVTSHFDEIFRLKGIASKADVFHI-LSGMWKTPAERCFM 265 (408)
Q Consensus 190 ~F~~~Y~~WleEq~r~l~ELR~AL~s~--~~-D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~l-lSg~W~Tp~ER~FL 265 (408)
..+..|.|=+.+..-++..|+..|... ++ +..+-. .+.+.+| .+..|++|+-.| ++.+=.+-.|.++-
T Consensus 22 ~~en~YqRaf~dL~~~v~~l~~~l~k~l~~~s~~q~~~-------~l~~vwr-~a~~A~~~l~qLPl~~~~~~~t~~FLs 93 (361)
T PF14620_consen 22 YLENQYQRAFHDLSYHVDNLEDELGKTLAANSPEQLSP-------LLAEVWR-QASEAQNDLGQLPLSQMPFNKTEKFLS 93 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH-------HHHHHHH-HHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence 345566677777777777777666322 11 222222 2334444 356788899998 78877888889999
Q ss_pred hhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015385 266 WIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAE 321 (408)
Q Consensus 266 WiGGfRPS~llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd 321 (408)
=||.|==+...+.+.. +|||+++...|..|+..+.. |++.|..+|..+..
T Consensus 94 qvGdfsy~la~~~~~g--~~Lt~~e~~tL~~L~~~s~~----l~~~L~~~~~~v~~ 143 (361)
T PF14620_consen 94 QVGDFSYSLAVRDLDG--EPLTDEEYKTLKELYEQSGE----LNKELQDVQNKVLS 143 (361)
T ss_pred HHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 9999877766664422 48999999999999998876 56666667766643
No 24
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=39.57 E-value=2.6e+02 Score=30.09 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHhhcc--CC-CchHHHHHHHHHHhHHHHHHHHhhhhccchhhh-hcCCCcchHhhhhh
Q 015385 190 AFDVEYSRWLEEHNRHIVELRAAVNSH--AG-DTELRTIVDNVTSHFDEIFRLKGIASKADVFHI-LSGMWKTPAERCFM 265 (408)
Q Consensus 190 ~F~~~Y~~WleEq~r~l~ELR~AL~s~--~~-D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~l-lSg~W~Tp~ER~FL 265 (408)
..+..|.|=+.+.--++..|+..|... ++ +.. ...++.+.+|. +.+|++|+-.+ ++.+=..-.|.++-
T Consensus 32 ~~en~YqRaf~dL~~~vd~l~~~L~k~l~~~s~~q-------~~~~l~~vwr~-as~A~~~l~qLPl~~~~~~~T~kFLs 103 (435)
T TIGR02889 32 YLQAQYQRAFYELTYHVEQIEAQLGKTLAMGSQRQ-------NTPVLADVWRH-ASAANESLSQLPLTQESLEKTSKFLS 103 (435)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHH-------HHHHHHHHHHH-HHHHHHHHhcCCCCCcchhhHHHHHH
Confidence 456677777788888888888777432 12 222 33445555655 45678889888 88888888889999
Q ss_pred hhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015385 266 WIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLA 320 (408)
Q Consensus 266 WiGGfRPS~llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslA 320 (408)
=+|+|==+...+.+.. +|||+++...|..|+..+.. |.+.|..+|..+.
T Consensus 104 qiGDfsy~la~~~~~g--~~lt~~e~~tL~~L~~~a~~----l~~~L~~~q~~v~ 152 (435)
T TIGR02889 104 QVGDFTYTLSVKDAEG--KSLSDKEYKTLTTLYNQAVK----LENQLRKVQNIVM 152 (435)
T ss_pred HHHHHHHHHHhhhccC--CCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 9999987766665533 48999999999999887754 6666777776663
No 25
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=35.64 E-value=86 Score=25.64 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 015385 352 GTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYF 392 (408)
Q Consensus 352 ~~Le~fl~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~ 392 (408)
+....++....+||-+.|+++.+--|-.++.|-++.+|+.+
T Consensus 21 e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 21 EEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 34567778888999999999999999999999999999874
No 26
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.17 E-value=52 Score=33.97 Aligned_cols=46 Identities=39% Similarity=0.517 Sum_probs=34.6
Q ss_pred CCHHHHHH-HHhhHHHHHHh-----hhhHHHHHHHHHhhHhHHhhHHHHHHH
Q 015385 122 GDQKTLRR-LAQNREAARKS-----RLRKKAYVQQLESSRLKLTQLEQELQR 167 (408)
Q Consensus 122 ~~~k~~rr-LaqnreaArks-----rlrkkaYvqqLe~sr~kL~qleqel~~ 167 (408)
+|-|.+|- +|+.|-..... -=.|..||.|||..+-|..|||.+++.
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888886 77655433222 235679999999999999999999984
No 27
>PRK11702 hypothetical protein; Provisional
Probab=31.62 E-value=22 Score=31.42 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.4
Q ss_pred HHhhhhHHHHHHHH
Q 015385 138 RKSRLRKKAYVQQL 151 (408)
Q Consensus 138 rksrlrkkaYvqqL 151 (408)
|+.|||||=||-..
T Consensus 5 RsRRlRKKL~v~EF 18 (108)
T PRK11702 5 RSRRLRKKMHIDEF 18 (108)
T ss_pred hhHHHHhhhhhHhh
Confidence 78899999998543
No 28
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=30.30 E-value=5.1e+02 Score=26.12 Aligned_cols=174 Identities=18% Similarity=0.270 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHhhccCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhhcC
Q 015385 190 AFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGG 269 (408)
Q Consensus 190 ~F~~~Y~~WleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWiGG 269 (408)
.|...|..=+++....+..|..|.+.-.....|+.++.-++ .|.+|...-..-..+ .|
T Consensus 165 ~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL-~~GN~lN~g~~~g~A---------------------~G 222 (370)
T PF02181_consen 165 LFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIIL-AIGNFLNGGTPRGNA---------------------KG 222 (370)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHSTCSTTCS----------------------SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH-HHHHHhccCCCcccc---------------------ce
Confidence 45555555556666667777777654334456777777666 344444432211222 34
Q ss_pred CCchH---------------HHHHHHh--------------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015385 270 FRSSE---------------LLKLLVN--------------QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLA 320 (408)
Q Consensus 270 fRPS~---------------llkLL~~--------------qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslA 320 (408)
|+-+. +++.|.. .|.++.......+.++... -..|..++..++..+.
T Consensus 223 F~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~----i~~l~~~~~~~~~~l~ 298 (370)
T PF02181_consen 223 FKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQD----IKELEKGLEKIKKELE 298 (370)
T ss_dssp E-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred ecHHhHHHHHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 43332 3443322 2222222111233333333 3345555666655554
Q ss_pred hhhhcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 015385 321 ETLANGSPSPSGTSGNVAN-YMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSR 394 (408)
Q Consensus 321 d~la~~~~~~~G~~~~v~~-~~~qm~~Am~KL~~Le~fl~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~r 394 (408)
.... ...+ .+.... +..-++.+-.++..|...+.+++..-.+++.-.-+-=+....-+|+--+.+|...
T Consensus 299 ~~~~----~~~~-~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~ 368 (370)
T PF02181_consen 299 AIEK----DEED-DDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDM 368 (370)
T ss_dssp HCCT----TSST-T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHH
T ss_pred hccc----cccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 4432 1100 111111 2334556668899999999999998888888775544556677787777777543
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.38 E-value=3.5e+02 Score=28.58 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015385 294 IYNLQQSSQQAEDALSQGMDALQQSL 319 (408)
Q Consensus 294 I~~LqqstqqaEdALsqgma~LQqsl 319 (408)
|..-+++...+++.|.+++..||..+
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34446777888888888888887643
No 30
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=27.66 E-value=1.2e+02 Score=29.22 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=30.2
Q ss_pred HHHHhhH-HHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 015385 128 RRLAQNR-EAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (408)
Q Consensus 128 rrLaqnr-eaArksrlrkkaYvqqLe~sr~kL~qleqel~ 166 (408)
..+.+|+ .+|-..=.|||.|-+||+..-..+..|||-+.
T Consensus 59 ~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 59 QKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554 47777778899999999999888888888654
No 31
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.58 E-value=53 Score=25.97 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=6.4
Q ss_pred HHhhHHHHHHHHh
Q 015385 157 KLTQLEQELQRAR 169 (408)
Q Consensus 157 kL~qleqel~~ar 169 (408)
+|.+.||+++.|.
T Consensus 40 rL~~ae~ra~~ae 52 (60)
T PF11471_consen 40 RLQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 32
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=26.84 E-value=2.1e+02 Score=26.77 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=52.2
Q ss_pred HHHHhhHhHHhhHHHHHH-HHhhhcccccCCCCCCCCCCCchhHHHHHHHHHHHHhHhHHHHHHHhhccCCCchHHHHHH
Q 015385 149 QQLESSRLKLTQLEQELQ-RARQQGIFISSSGDQSHSMSGNAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVD 227 (408)
Q Consensus 149 qqLe~sr~kL~qleqel~-~ar~qg~~~~~~~~~~~~~~~~~~F~~~Y~~WleEq~r~l~ELR~AL~s~~~D~eLr~LVd 227 (408)
++|+. +|.+|+++.. ..++.|.....--|. +.++.++..-.+| +.|-...+..|......+.. ....-+.+
T Consensus 2 ~~L~~---~l~~L~~~~~~~d~~~~~~~~~~Fd~-~LF~~~~~~L~~y---l~Ei~~~l~~L~~~~~~~~~-~~~~~laE 73 (173)
T PF07445_consen 2 QQLEQ---QLQQLAQQAAQLDRQRGEQHQARFDR-QLFSCRSQRLSDY---LQEIEQTLAQLQQQVEQNRL-QQVAFLAE 73 (173)
T ss_pred hHHHH---HHHHHHHHHHHHhhcccccchhhccH-HHHhccCchHHHH---HHHHHHHHHHHHHHHhcChH-HHHHHHHH
Confidence 45666 8888888876 333333222111111 2233333333333 68889999999988766543 45678899
Q ss_pred HHHHhHHHHHHHHh
Q 015385 228 NVTSHFDEIFRLKG 241 (408)
Q Consensus 228 ~~lsHY~eyfr~Ks 241 (408)
++.+.+..+.+.-.
T Consensus 74 kL~~Q~~AL~r~l~ 87 (173)
T PF07445_consen 74 KLVAQIEALQRELA 87 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 33
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=26.71 E-value=68 Score=28.94 Aligned_cols=39 Identities=28% Similarity=0.529 Sum_probs=30.8
Q ss_pred hhhhhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 015385 263 CFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQ 302 (408)
Q Consensus 263 ~FLWiGGfRPS~llkLL~~qLepLTeqQL~~I~~Lqqstq 302 (408)
.+.|+ |.+|+++.++-.....|||+..+..+.+|..+..
T Consensus 89 ~l~~~-G~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~ 127 (160)
T cd00223 89 DLRWL-GLRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPR 127 (160)
T ss_pred CcEEc-cCCHHHHhhccccccCCCCHHHHHHHHHHHhccc
Confidence 46676 5889998874455677999999999999888754
No 34
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=26.05 E-value=17 Score=28.27 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=8.1
Q ss_pred hhhhhhhcCCCch
Q 015385 261 ERCFMWIGGFRSS 273 (408)
Q Consensus 261 ER~FLWiGGfRPS 273 (408)
+---.|+||||--
T Consensus 35 ~~Rs~WLgGWRea 47 (55)
T COG3130 35 NQRSQWLGGWREA 47 (55)
T ss_pred hHHHHHHHHHHHH
Confidence 3344688888754
No 35
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=23.80 E-value=1.3e+02 Score=30.30 Aligned_cols=60 Identities=20% Similarity=0.133 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHhhccCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcc
Q 015385 190 AFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKT 258 (408)
Q Consensus 190 ~F~~~Y~~WleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~T 258 (408)
.|+.||++|+.|+.....|+..-. .-|+-=-.||-.|.-+|..--.+ .+ ....|.+.|..
T Consensus 77 ~~defyEd~f~E~~~kygEiee~~---Vc~Nl~~hl~GNVYV~f~~Ee~a--e~----a~~~lnnRw~~ 136 (260)
T KOG2202|consen 77 HEDEFYEDVFTELEDKYGEIEELN---VCDNLGDHLVGNVYVKFRSEEDA--EA----ALEDLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhh---hhcccchhhhhhhhhhcccHHHH--HH----HHHHHcCcccc
Confidence 899999999999998888887762 11222335667776555432221 11 33446777653
No 36
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.24 E-value=1.4e+02 Score=29.42 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 015385 132 QNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (408)
Q Consensus 132 qnreaArksrlrkkaYvqqLe~sr~kL~qleqel~ 166 (408)
.|.-+|-.+=.|||.|=|||+-----|+.||+.+.
T Consensus 58 kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~ 92 (221)
T KOG1656|consen 58 KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445555557899999988765555666665543
No 37
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.30 E-value=1.9e+02 Score=26.15 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=14.8
Q ss_pred hhhhhcCCCchHHHHHHHhhc
Q 015385 263 CFMWIGGFRSSELLKLLVNQL 283 (408)
Q Consensus 263 ~FLWiGGfRPS~llkLL~~qL 283 (408)
+|+|.=||.=|.+.=+-...|
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~m 41 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRSM 41 (126)
T ss_pred eeeeecCCchhHHHHHHHHhH
Confidence 789999998887664433333
No 38
>PLN02796 D-glycerate 3-kinase
Probab=22.05 E-value=1.2e+02 Score=31.62 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHhhccCCCchHHHHHHHHHHhHHHHHHHH
Q 015385 190 AFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLK 240 (408)
Q Consensus 190 ~F~~~Y~~WleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~K 240 (408)
.|+--| +|..+|++.+. +.-...++|+++...|+.+|=-|..||..-
T Consensus 274 ~~~~v~-~WR~qQE~~l~---~~~~~gMsde~v~~FV~~~mP~y~~y~~~l 320 (347)
T PLN02796 274 DPSWVY-EWRLQAEIAMR---AKGKPGMSDEEVADFVSRYMPAYKAYLPGL 320 (347)
T ss_pred CchHHH-HHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 89999987654 333446889999999999999999988754
No 39
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=21.68 E-value=38 Score=27.43 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=15.0
Q ss_pred CCCcchHhhhhhhhcCCCc
Q 015385 254 GMWKTPAERCFMWIGGFRS 272 (408)
Q Consensus 254 g~W~Tp~ER~FLWiGGfRP 272 (408)
...+.-.||+|-||.+||-
T Consensus 44 ~~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 44 YKRRWVVERTFAWLKRFRR 62 (88)
T ss_pred hccceehhhhhHHHHHcCc
Confidence 3445569999999999974
No 40
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=20.50 E-value=40 Score=28.62 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=14.0
Q ss_pred hhhhhcCCCchHHHHHHHhhc
Q 015385 263 CFMWIGGFRSSELLKLLVNQL 283 (408)
Q Consensus 263 ~FLWiGGfRPS~llkLL~~qL 283 (408)
.+++.+|+||+|++.|=..++
T Consensus 28 ~l~~~tG~R~~El~~l~~~~v 48 (173)
T PF00589_consen 28 LLLLYTGLRPSELLRLRWDDV 48 (173)
T ss_dssp HHHHHHT--HHHHHT-BGGGE
T ss_pred HHHHHHccchhhhhhhhhhhh
Confidence 468889999999998655544
No 41
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=20.15 E-value=3.6e+02 Score=22.49 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=46.4
Q ss_pred HHhhHHHHHHHHh--hhcccccCCCCCCCCCCCchhHHHHHHHHHHHHhHhHHHHHHHhhccCCCchHHHHHHHHHHhHH
Q 015385 157 KLTQLEQELQRAR--QQGIFISSSGDQSHSMSGNAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFD 234 (408)
Q Consensus 157 kL~qleqel~~ar--~qg~~~~~~~~~~~~~~~~~~F~~~Y~~WleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~ 234 (408)
.+.+|+..+..+- ..|.+++ |+..|-..|..+...-...+.+|+..+. ++.+....|+.+-.-+.
T Consensus 14 ~~~~l~~~l~~~e~~~RgYllt----------gd~~~l~~y~~~~~~~~~~l~~L~~l~~---~~p~q~~~l~~l~~~~~ 80 (138)
T PF05227_consen 14 AIEQLESALLDQESALRGYLLT----------GDPEFLEPYQEARARLEKALAQLRQLVQ---DNPEQQERLDQLEELID 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHTT---T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHc----------CCHhhhchHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHH
Confidence 4444555544332 3565553 4568999999999999999999998764 34466677777777777
Q ss_pred HHHHH
Q 015385 235 EIFRL 239 (408)
Q Consensus 235 eyfr~ 239 (408)
.++..
T Consensus 81 ~~~~~ 85 (138)
T PF05227_consen 81 QWREL 85 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66633
Done!