Query 015385
Match_columns 408
No_of_seqs 185 out of 243
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.8 3.4E-09 1.2E-13 80.3 5.7 43 126-171 2-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.4 4.1E-07 1.4E-11 70.6 5.3 39 123-164 7-45 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.2 1.4E-06 4.8E-11 66.9 4.8 34 125-158 1-34 (62)
4 2wt7_A Proto-oncogene protein 98.0 1.3E-05 4.4E-10 61.8 6.5 36 125-160 2-37 (63)
5 1t2k_D Cyclic-AMP-dependent tr 97.9 1.5E-05 5E-10 60.9 5.7 34 126-159 2-35 (61)
6 1gd2_E Transcription factor PA 97.9 1E-05 3.5E-10 64.2 4.7 39 126-167 9-47 (70)
7 2y39_A Nickel and cobalt resis 97.3 0.0048 1.6E-07 53.4 13.7 101 273-391 9-112 (118)
8 1ci6_A Transcription factor AT 96.4 0.0026 9E-08 49.0 4.2 35 126-160 3-37 (63)
9 3a5t_A Transcription factor MA 95.2 0.008 2.7E-07 51.1 2.3 38 125-165 37-74 (107)
10 1gu4_A CAAT/enhancer binding p 94.2 0.13 4.4E-06 41.4 7.0 47 123-169 13-70 (78)
11 3itf_A Periplasmic adaptor pro 94.0 0.3 1E-05 43.3 9.7 99 281-399 42-142 (145)
12 1hjb_A Ccaat/enhancer binding 93.0 0.26 9.1E-06 40.3 7.0 31 123-153 13-43 (87)
13 3oeo_A Spheroplast protein Y; 86.3 0.35 1.2E-05 42.1 2.6 100 279-396 28-127 (138)
14 3lay_A Zinc resistance-associa 83.5 13 0.00044 33.7 11.7 55 268-325 52-107 (175)
15 3o39_A Periplasmic protein rel 82.7 1.7 5.8E-05 36.6 5.2 83 285-385 17-100 (108)
16 2wt7_B Transcription factor MA 80.2 4.2 0.00014 33.5 6.4 34 123-156 25-58 (90)
17 1skn_P DNA-binding domain of S 76.4 1.2 4.1E-05 36.9 2.1 29 124-152 61-89 (92)
18 2ksd_A Aerobic respiration con 64.7 0.53 1.8E-05 40.5 -2.5 30 147-176 76-105 (115)
19 2ke4_A CDC42-interacting prote 57.2 73 0.0025 26.2 9.2 42 283-325 8-54 (98)
20 2er8_A Regulatory protein Leu3 53.3 6.6 0.00023 29.3 2.1 23 144-169 47-69 (72)
21 1zme_C Proline utilization tra 49.4 12 0.00041 27.6 3.0 24 144-170 42-65 (70)
22 2kz5_A Transcription factor NF 44.7 4.5 0.00015 33.4 -0.1 21 125-145 66-86 (91)
23 4abm_A Charged multivesicular 41.9 36 0.0012 27.0 4.9 36 131-166 41-76 (79)
24 2c9l_Y EB1, zebra, BZLF1 trans 41.6 29 0.001 26.3 3.9 24 129-155 5-28 (63)
25 1hwt_C Protein (heme activator 41.3 11 0.00038 28.5 1.7 27 139-168 51-77 (81)
26 3he4_B Synzip5; heterodimeric 41.0 31 0.0011 24.5 3.8 26 144-169 8-33 (46)
27 3plt_A Sphingolipid long chain 35.1 50 0.0017 31.4 5.5 42 131-172 99-147 (234)
28 1k1f_A Breakpoint cluster regi 32.5 32 0.0011 27.0 3.0 30 146-175 29-59 (72)
29 1ux5_A BNI1 protein; structura 31.7 3.8E+02 0.013 26.3 12.4 90 306-396 301-392 (411)
30 3coq_A Regulatory protein GAL4 29.6 33 0.0011 26.2 2.7 22 144-168 43-64 (89)
31 1pyi_A Protein (pyrimidine pat 29.5 38 0.0013 26.4 3.1 22 145-169 47-68 (96)
32 1s16_A Topoisomerase IV subuni 24.4 20 0.00068 35.9 0.7 15 131-145 376-390 (390)
33 1hlo_A Protein (transcription 22.4 52 0.0018 25.5 2.6 24 146-172 57-80 (80)
34 1d66_A Protein (GAL4); protein 21.8 31 0.001 24.8 1.1 16 144-162 50-65 (66)
35 1js9_A Coat protein, capsid pr 21.2 20 0.00069 32.6 0.0 15 131-145 12-26 (189)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.84 E-value=3.4e-09 Score=80.26 Aligned_cols=43 Identities=42% Similarity=0.576 Sum_probs=37.6
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHHHHhhh
Q 015385 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171 (408)
Q Consensus 126 ~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel~~ar~q 171 (408)
-.+|+..|||+|+.||.|||+||+.||. ++.+|+.|-..-+.+
T Consensus 2 r~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 2 REVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 788888887765543
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.37 E-value=4.1e-07 Score=70.57 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=29.1
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHH
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 164 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqe 164 (408)
+|+..+|-++||||||+||.||++|+..||. ++.+|+.|
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~e 45 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSK 45 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5666777788999999999999999999999 44444433
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.19 E-value=1.4e-06 Score=66.89 Aligned_cols=34 Identities=41% Similarity=0.410 Sum_probs=29.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHH
Q 015385 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 158 (408)
Q Consensus 125 k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL 158 (408)
|..||...||+||+|||.|||.|++.||.---.|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L 34 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTL 34 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999944333
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=97.98 E-value=1.3e-05 Score=61.81 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhh
Q 015385 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 160 (408)
Q Consensus 125 k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~q 160 (408)
|-.+|+-.||+||+|||.|||.|++.||.-.-.|..
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~ 37 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLED 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999994444443
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=97.92 E-value=1.5e-05 Score=60.90 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=28.9
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHh
Q 015385 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLT 159 (408)
Q Consensus 126 ~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~ 159 (408)
=.+|+..||+||.|||.|||.|++.||.---.|.
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~ 35 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLS 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999443333
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.90 E-value=1e-05 Score=64.15 Aligned_cols=39 Identities=33% Similarity=0.419 Sum_probs=34.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHHH
Q 015385 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167 (408)
Q Consensus 126 ~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel~~ 167 (408)
..+|-||||+|+|-.|-||++||..||. ++.+||.+.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4688999999999999999999999999 77777766553
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.33 E-value=0.0048 Score=53.37 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=77.4
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHH
Q 015385 273 SELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG 352 (408)
Q Consensus 273 S~llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~ 352 (408)
+.+=.+|...| +||++|...|..+...-.....+|.++|...-..|++.+.... .|..++..|+.
T Consensus 9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~-----------~~~p~V~aaid--- 73 (118)
T 2y39_A 9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP-----------AWSPEVEAATQ--- 73 (118)
T ss_dssp CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------SCCHHHHHHHH---
T ss_pred CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------ccCHHHHHHHH---
Confidence 33444566777 7999999999999999999999999999999999999986321 13445555554
Q ss_pred HHHHHHHHHhHHHHHH---HHHHHHhcChHHHHHHHHHHHHH
Q 015385 353 TLEGFLRQADNLRQQT---LQQMHRILTTRQSARALLAINDY 391 (408)
Q Consensus 353 ~Le~fl~qAD~LR~qT---L~~m~~ILTprQAArfLlAl~ey 391 (408)
.|-...-.|+..| +-.|..||||-|+.+|=-.+.+-
T Consensus 74 ---~~h~~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 74 ---EVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333445688888 66689999999999997666543
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.45 E-value=0.0026 Score=48.97 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhh
Q 015385 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ 160 (408)
Q Consensus 126 ~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~q 160 (408)
-.|+.-+||.||+++|.|||.+++.||.---.|.+
T Consensus 3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~ 37 (63)
T 1ci6_A 3 KLKKMEQNKTAATRYRQKKRAEQEALTGECKELEK 37 (63)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999984444443
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=95.17 E-value=0.008 Score=51.15 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=31.5
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHH
Q 015385 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165 (408)
Q Consensus 125 k~~rrLaqnreaArksrlrkkaYvqqLe~sr~kL~qleqel 165 (408)
|-.||--.||++|+.||.||.+.+..||. .+.+|.+|+
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~ 74 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEV 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 77899999999999999999999999997 444444443
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.21 E-value=0.13 Score=41.37 Aligned_cols=47 Identities=32% Similarity=0.308 Sum_probs=35.2
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh---------hH--hHHhhHHHHHHHHh
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRAR 169 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkkaYvqqLe~---------sr--~kL~qleqel~~ar 169 (408)
|++-..|-..|.+||+|||-.+|.-.+.++. .+ .++.+|+.|+..-|
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999999998888854 22 33445555555555
No 11
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=94.04 E-value=0.3 Score=43.26 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=61.1
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHH-HHHHHHHHHH
Q 015385 281 NQLEPLTEQQLVGIYNLQQSSQQAEDALSQ-GMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAM-GKLGTLEGFL 358 (408)
Q Consensus 281 ~qLepLTeqQL~~I~~LqqstqqaEdALsq-gma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am-~KL~~Le~fl 358 (408)
..| +||++|...|..|.+..+.+...+.. .++ .+-+.+.++... +.|+ ..++.+...-
T Consensus 42 ~~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~fD---------------eaa~ral~~~~~~~~ 101 (145)
T 3itf_A 42 DGI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENFD---------------ENAVRAQAEKMANEQ 101 (145)
T ss_dssp TTC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSCC---------------HHHHHHHHHHHHHHH
T ss_pred ccC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCCC---------------HHHHHHHHHHHHHHH
Confidence 344 69999999999999888776554432 222 233333322111 1112 2223333444
Q ss_pred HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Q 015385 359 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALS 399 (408)
Q Consensus 359 ~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLRaLs 399 (408)
.+.--.|.++-.+|..||||-|-+.|---..+-...++.++
T Consensus 102 ~e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~ 142 (145)
T 3itf_A 102 IARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT 142 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445788888999999999999998876666655555544
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.01 E-value=0.26 Score=40.33 Aligned_cols=31 Identities=26% Similarity=0.174 Sum_probs=26.6
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES 153 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkkaYvqqLe~ 153 (408)
|++-..|--.|.+||||||-.+|.=.++++.
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~ 43 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7778888899999999999999987777744
No 13
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=86.33 E-value=0.35 Score=42.12 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=54.5
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 015385 279 LVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 358 (408)
Q Consensus 279 L~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fl 358 (408)
+...| +||++|...|..|.+..+..-.. .+....+.+.+.+.++... ...+. ..++.+...-
T Consensus 28 m~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~fD-----------eaav~---al~~~~~~~~ 89 (138)
T 3oeo_A 28 MFKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTFD-----------KVKAE---AQIAKMEEQR 89 (138)
T ss_dssp --CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSCC-----------HHHHH---HHHGGGSHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCC-----------HHHHH---HHHHHHHHHH
Confidence 44666 69999999999998877654221 1112223344434322111 11111 1222333334
Q ss_pred HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 015385 359 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 396 (408)
Q Consensus 359 ~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLR 396 (408)
.+.--.|.++..+|..||||-|-+.|---+.+-..+++
T Consensus 90 ~e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 90 KANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 44455788899999999999999998776655544443
No 14
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=83.53 E-value=13 Score=33.72 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=36.4
Q ss_pred cCCCchHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015385 268 GGFRSSELLKLLVNQ-LEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLAN 325 (408)
Q Consensus 268 GGfRPS~llkLL~~q-LepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~la~ 325 (408)
|||.+-. =+..+ .-+||++|..+|..|.++-+.+-.+|.+.|...++.+-+.+..
T Consensus 52 g~~~~g~---gm~~q~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 52 HHWGNND---GMWQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCC---CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6665542 12233 2379999999999999999999999999999999888777653
No 15
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=82.71 E-value=1.7 Score=36.62 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q 015385 285 PLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN 363 (408)
Q Consensus 285 pLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqslAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fl~qAD~ 363 (408)
+||++|...|..|....+.+-+... ...+ .+-+.+.++.... ........+|. ..-.+.--
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDE--------aaar~l~~~~~------~~~~e~~v 78 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDK--------AKAEAQIAKME------EQRKANML 78 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCH--------HHHHHHHHHTH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCH--------HHHHHHHHHHH------HHHHHHHH
Confidence 6999999999999887766533222 1122 2333333222211 01111111221 11122223
Q ss_pred HHHHHHHHHHHhcChHHHHHHH
Q 015385 364 LRQQTLQQMHRILTTRQSARAL 385 (408)
Q Consensus 364 LR~qTL~~m~~ILTprQAArfL 385 (408)
.|.++=++|..||||-|-+.|-
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 4677788999999999998864
No 16
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=80.15 E-value=4.2 Score=33.53 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=29.5
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHh
Q 015385 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRL 156 (408)
Q Consensus 123 ~~k~~rrLaqnreaArksrlrkkaYvqqLe~sr~ 156 (408)
.=|-.||=-.||-+|..||-||-.-+..||.-..
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~ 58 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKT 58 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999999999999998543
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=76.45 E-value=1.2 Score=36.89 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.2
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 015385 124 QKTLRRLAQNREAARKSRLRKKAYVQQLE 152 (408)
Q Consensus 124 ~k~~rrLaqnreaArksrlrkkaYvqqLe 152 (408)
-+-.||=..||.||+++|.||..-+..||
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999999999987665544
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=64.67 E-value=0.53 Score=40.50 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=13.0
Q ss_pred HHHHHHhhHhHHhhHHHHHHHHhhhccccc
Q 015385 147 YVQQLESSRLKLTQLEQELQRARQQGIFIS 176 (408)
Q Consensus 147 YvqqLe~sr~kL~qleqel~~ar~qg~~~~ 176 (408)
-|+|||.||.+|+++=.+|++.|+|..+..
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999987763
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=57.22 E-value=73 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=33.0
Q ss_pred cCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015385 283 LEPLTEQQ-----LVGIYNLQQSSQQAEDALSQGMDALQQSLAETLAN 325 (408)
Q Consensus 283 LepLTeqQ-----L~~I~~LqqstqqaEdALsqgma~LQqslAd~la~ 325 (408)
...|.++| ..+|+.|+..+.++.++ .+||.+++....+.+..
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~ 54 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQM 54 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGG
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcc
Confidence 34677777 46788888888888887 78899998888888764
No 20
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.30 E-value=6.6 Score=29.31 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhHhHHhhHHHHHHHHh
Q 015385 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (408)
Q Consensus 144 kkaYvqqLe~sr~kL~qleqel~~ar 169 (408)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 9999999987644
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.39 E-value=12 Score=27.57 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhHhHHhhHHHHHHHHhh
Q 015385 144 KKAYVQQLESSRLKLTQLEQELQRARQ 170 (408)
Q Consensus 144 kkaYvqqLe~sr~kL~qleqel~~ar~ 170 (408)
++.||++||. ++.+||+.|..-++
T Consensus 42 ~~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4579999998 99999999886553
No 22
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=44.69 E-value=4.5 Score=33.45 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHhhhhHH
Q 015385 125 KTLRRLAQNREAARKSRLRKK 145 (408)
Q Consensus 125 k~~rrLaqnreaArksrlrkk 145 (408)
+-.||=..||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 346888999999999999984
No 23
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=41.95 E-value=36 Score=26.98 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.9
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHhhHhHHhhHHHHHH
Q 015385 131 AQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (408)
Q Consensus 131 aqnreaArksrlrkkaYvqqLe~sr~kL~qleqel~ 166 (408)
.-|+.+|-..=.|||.|=+||+.--..+.+||+.+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777888999999998889999998764
No 24
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=41.58 E-value=29 Score=26.34 Aligned_cols=24 Identities=50% Similarity=0.512 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHhhH
Q 015385 129 RLAQNREAARKSRLRKKAYVQQLESSR 155 (408)
Q Consensus 129 rLaqnreaArksrlrkkaYvqqLe~sr 155 (408)
+--.||-|+||||-+=| ++||--|
T Consensus 5 kryknr~asrk~rakfk---n~lqh~r 28 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFK---QLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33579999999998754 5555443
No 25
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=41.33 E-value=11 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHhhHhHHhhHHHHHHHH
Q 015385 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRA 168 (408)
Q Consensus 139 ksrlrkkaYvqqLe~sr~kL~qleqel~~a 168 (408)
+.++.++.||+.||. +|.+||..|..-
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 345567789999998 999999887653
No 26
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.03 E-value=31 Score=24.54 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHhHHhhHHHHHHHHh
Q 015385 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (408)
Q Consensus 144 kkaYvqqLe~sr~kL~qleqel~~ar 169 (408)
-|-|||.||.--..|..|..-|.-|+
T Consensus 8 lknyiqeleernaelknlkehlkfak 33 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAK 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 47899999998788877777666555
No 27
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=35.15 E-value=50 Score=31.37 Aligned_cols=42 Identities=36% Similarity=0.422 Sum_probs=27.5
Q ss_pred HhhHHHH-HHhhhhHHHHHHHHHhh------HhHHhhHHHHHHHHhhhc
Q 015385 131 AQNREAA-RKSRLRKKAYVQQLESS------RLKLTQLEQELQRARQQG 172 (408)
Q Consensus 131 aqnreaA-rksrlrkkaYvqqLe~s------r~kL~qleqel~~ar~qg 172 (408)
..|||.. ..+|-||+.-..++.-- -.||..|||||.||-+.-
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~ 147 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAES 147 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHh
Confidence 3577765 45566655555444321 157889999999998764
No 28
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=32.52 E-value=32 Score=27.03 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=22.5
Q ss_pred HHH-HHHHhhHhHHhhHHHHHHHHhhhcccc
Q 015385 146 AYV-QQLESSRLKLTQLEQELQRARQQGIFI 175 (408)
Q Consensus 146 aYv-qqLe~sr~kL~qleqel~~ar~qg~~~ 175 (408)
-|| |.||.+|..+..||||+-+-|=-=||+
T Consensus 29 gdiEqeLe~Ck~sIrrLE~evn~ErFrmIYL 59 (72)
T 1k1f_A 29 GDIEQELERAKASIRRLEQEVNQERFRMIYL 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444 679999999999999998766444443
No 29
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=31.70 E-value=3.8e+02 Score=26.32 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-hHHHHH
Q 015385 306 DALSQGMDALQQSLAETLANGSPSPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILT-TRQSAR 383 (408)
Q Consensus 306 dALsqgma~LQqslAd~la~~~~~~~G~~~~v~~~~-~qm~~Am~KL~~Le~fl~qAD~LR~qTL~~m~~ILT-prQAAr 383 (408)
.+|..++..++..+...-..+... .+....+...| .-+..|-.++..|...+..+...-..++.-...=-+ ..+--+
T Consensus 301 ~~L~~~l~~v~~~l~~~~~s~~~~-~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~~ 379 (411)
T 1ux5_A 301 KDFSQSIVNVERSVEIGNLSDSSK-FHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKIS 379 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCTTS-SCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcccc-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 457777778877664321111100 00011121112 234566678888888888887766666655433333 345566
Q ss_pred HHHHHHHHHHHHH
Q 015385 384 ALLAINDYFSRLR 396 (408)
Q Consensus 384 fLlAl~ey~~rLR 396 (408)
|+--+.+|...++
T Consensus 380 fF~~~~~F~~~f~ 392 (411)
T 1ux5_A 380 FFKKFADFINEYK 392 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666654443
No 30
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.58 E-value=33 Score=26.18 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhHhHHhhHHHHHHHH
Q 015385 144 KKAYVQQLESSRLKLTQLEQELQRA 168 (408)
Q Consensus 144 kkaYvqqLe~sr~kL~qleqel~~a 168 (408)
++.||+.||. ++.+||..|+..
T Consensus 43 ~~~~~~~L~~---r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVES---RLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHHH---HHHHHHHHHHHH
Confidence 3569999998 999999999874
No 31
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.51 E-value=38 Score=26.35 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.9
Q ss_pred HHHHHHHHhhHhHHhhHHHHHHHHh
Q 015385 145 KAYVQQLESSRLKLTQLEQELQRAR 169 (408)
Q Consensus 145 kaYvqqLe~sr~kL~qleqel~~ar 169 (408)
+.||+.||. +|.+||..|....
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHhC
Confidence 569999998 9999999998654
No 32
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=24.39 E-value=20 Score=35.92 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=6.9
Q ss_pred HhhHHHHHHhhhhHH
Q 015385 131 AQNREAARKSRLRKK 145 (408)
Q Consensus 131 aqnreaArksrlrkk 145 (408)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 477999999998876
No 33
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.40 E-value=52 Score=25.54 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=19.1
Q ss_pred HHHHHHHhhHhHHhhHHHHHHHHhhhc
Q 015385 146 AYVQQLESSRLKLTQLEQELQRARQQG 172 (408)
Q Consensus 146 aYvqqLe~sr~kL~qleqel~~ar~qg 172 (408)
.||+.|+. ++..|+.|++..++|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 69999998 7778888888777653
No 34
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.81 E-value=31 Score=24.85 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhHhHHhhHH
Q 015385 144 KKAYVQQLESSRLKLTQLE 162 (408)
Q Consensus 144 kkaYvqqLe~sr~kL~qle 162 (408)
++.||++||. +|.+||
T Consensus 50 ~~~~~~~Le~---rl~~LE 65 (66)
T 1d66_A 50 TRAHLTEVES---RLERLE 65 (66)
T ss_dssp CHHHHHHHHH---HHTTC-
T ss_pred cHHHHHHHHH---HHHHHc
Confidence 3579999999 888887
No 35
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=21.19 E-value=20 Score=32.61 Aligned_cols=15 Identities=47% Similarity=0.652 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhhhHH
Q 015385 131 AQNREAARKSRLRKK 145 (408)
Q Consensus 131 aqnreaArksrlrkk 145 (408)
||.|.|||+-|++||
T Consensus 12 aQRRaaaR~nr~~~~ 26 (189)
T 1js9_A 12 AQRRAAARRNRWTAR 26 (189)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhhhhcc
Confidence 788999999999888
Done!