Query 015385
Match_columns 408
No_of_seqs 185 out of 243
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 11:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 53.3 3.9 0.00028 30.7 2.7 19 127-145 50-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 38.2 9.3 0.00068 28.0 2.6 28 148-175 32-59 (67)
3 d1v9da_ a.207.1.1 (A:) Diaphan 35.5 1.4E+02 0.01 26.2 11.2 54 343-396 248-301 (332)
4 d2c35a1 a.60.8.2 (A:14-142) RN 25.8 29 0.0021 27.5 4.0 78 218-297 40-120 (129)
5 d1uuja_ a.221.1.1 (A:) Lissenc 21.4 31 0.0023 25.6 3.0 19 375-393 1-19 (76)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 17.9 44 0.0032 23.0 3.1 21 146-169 33-53 (61)
7 d1ykhb1 a.252.1.1 (B:2-130) RN 17.5 1.3E+02 0.0094 23.7 6.4 35 282-316 81-115 (129)
8 d1zbdb_ g.50.1.1 (B:) Effector 17.4 73 0.0053 24.5 4.7 39 284-322 1-39 (124)
9 d1b33n_ d.30.1.1 (N:) Allophyc 15.1 38 0.0028 24.4 2.1 14 194-207 32-45 (67)
10 d1ux5a_ a.207.1.1 (A:) Bni1 {B 15.1 3.8E+02 0.027 23.9 14.5 193 190-397 184-393 (411)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=53.26 E-value=3.9 Score=30.75 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.3
Q ss_pred HHHHHhhHHHHHHhhhhHH
Q 015385 127 LRRLAQNREAARKSRLRKK 145 (408)
Q Consensus 127 ~rrLaqnreaArksrlrkk 145 (408)
.||=..|+-||+.+|.||-
T Consensus 50 IRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 50 IRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhhh
Confidence 5888999999999999984
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.21 E-value=9.3 Score=27.97 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=21.7
Q ss_pred HHHHHhhHhHHhhHHHHHHHHhhhcccc
Q 015385 148 VQQLESSRLKLTQLEQELQRARQQGIFI 175 (408)
Q Consensus 148 vqqLe~sr~kL~qleqel~~ar~qg~~~ 175 (408)
-|.||.++..+..|||||.+-|=.-+|+
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iYL 59 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIYL 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998766433443
No 3
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.48 E-value=1.4e+02 Score=26.19 Aligned_cols=54 Identities=6% Similarity=-0.010 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 015385 343 QMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 396 (408)
Q Consensus 343 qm~~Am~KL~~Le~fl~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLR 396 (408)
-+..|..++..|...+.+++..-.+++.-.-+--+..+.-+|+--+.+|...+.
T Consensus 248 Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~ 301 (332)
T d1v9da_ 248 FVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356677899999999999998877777766544444566788888777765543
No 4
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.80 E-value=29 Score=27.45 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhhcCCCchHH--HHHHHhhcC-CChHHHHHHH
Q 015385 218 GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSEL--LKLLVNQLE-PLTEQQLVGI 294 (408)
Q Consensus 218 ~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWiGGfRPS~l--lkLL~~qLe-pLTeqQL~~I 294 (408)
.+.+|..+..+.+.|-...-+.+..-+...|..+++..=.++.|.+ =|+..+|+.. ++.|++.++ .+|++++..|
T Consensus 40 ~~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~i 117 (129)
T d2c35a1 40 DEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQI 117 (129)
T ss_dssp SSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 3567888888888765544344666677778888887778898887 4688888864 556778885 6899998877
Q ss_pred HHH
Q 015385 295 YNL 297 (408)
Q Consensus 295 ~~L 297 (408)
=+.
T Consensus 118 Ld~ 120 (129)
T d2c35a1 118 LDD 120 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.37 E-value=31 Score=25.62 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.1
Q ss_pred hcChHHHHHHHHHHHHHHH
Q 015385 375 ILTTRQSARALLAINDYFS 393 (408)
Q Consensus 375 ILTprQAArfLlAl~ey~~ 393 (408)
|||+||+.+-=-||.+|+.
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999975
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.90 E-value=44 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=14.8
Q ss_pred HHHHHHHhhHhHHhhHHHHHHHHh
Q 015385 146 AYVQQLESSRLKLTQLEQELQRAR 169 (408)
Q Consensus 146 aYvqqLe~sr~kL~qleqel~~ar 169 (408)
.||+.|+. +...|++|...-+
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~ 53 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLK 53 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 69999999 5556666665443
No 7
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.48 E-value=1.3e+02 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=27.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015385 282 QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQ 316 (408)
Q Consensus 282 qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQ 316 (408)
.++.=.+.|+.+|..|+.+.+.+|..+.+.+.+..
T Consensus 81 ~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678999999999999999998877766544
No 8
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.43 E-value=73 Score=24.55 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015385 284 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAET 322 (408)
Q Consensus 284 epLTeqQL~~I~~LqqstqqaEdALsqgma~LQqslAd~ 322 (408)
++||+++...|.+.-++-...+..-.+++.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999888887777777777777778888888877664
No 9
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.12 E-value=38 Score=24.41 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHhHH
Q 015385 194 EYSRWLEEHNRHIV 207 (408)
Q Consensus 194 ~Y~~WleEq~r~l~ 207 (408)
-|+.|+.||+|.+.
T Consensus 32 py~nWf~EQQrI~K 45 (67)
T d1b33n_ 32 PYENWFREQQRIQK 45 (67)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 38899999998764
No 10
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.06 E-value=3.8e+02 Score=23.86 Aligned_cols=193 Identities=11% Similarity=0.106 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHhhccCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhhcC
Q 015385 190 AFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGG 269 (408)
Q Consensus 190 ~F~~~Y~~WleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWiGG 269 (408)
.|...|..=+++....+..|..|...-.....|+.++.-+++ +.+|... + ...++-|-+ .++..|..
T Consensus 184 ~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~-~GN~lN~-g-~~~A~GFkL----------~sL~kL~d 250 (411)
T d1ux5a_ 184 TVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILA-VGNFMND-T-SKQAQGFKL----------STLQRLTF 250 (411)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHSC-G-GGCCSCCCG----------GGGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH-HhhhhcC-C-CCCcceeeh----------HHHHHhhh
Confidence 455555555567777777777777655556778888877763 3444331 1 011111111 11223333
Q ss_pred CCc----hHHHHHHHh-------hcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 015385 270 FRS----SELLKLLVN-------QLEPLTEQQLVGIYNLQQ----SSQQAEDALSQGMDALQQSLAETLANGSPSPSGTS 334 (408)
Q Consensus 270 fRP----S~llkLL~~-------qLepLTeqQL~~I~~Lqq----stqqaEdALsqgma~LQqslAd~la~~~~~~~G~~ 334 (408)
.|- ..|++.|.. .+..+.+ ++..|..... .+...=..|..++..++..+-..-....... ...
T Consensus 251 ~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~-el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~-~~~ 328 (411)
T d1ux5a_ 251 IKDTTNSMTFLNYVEKIVRLNYPSFNDFLS-ELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKF-HPL 328 (411)
T ss_dssp CBCTTSCSBHHHHHHHHHHHHCGGGGGHHH-HTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSS-CTT
T ss_pred ccCCCCCeeHHHHHHHHHHHhCcHhhccHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cch
Confidence 332 235555542 3323332 2222221111 1122222344555555555432211110000 001
Q ss_pred Cccc-chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHH
Q 015385 335 GNVA-NYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRIL-TTRQSARALLAINDYFSRLRA 397 (408)
Q Consensus 335 ~~v~-~~~~qm~~Am~KL~~Le~fl~qAD~LR~qTL~~m~~IL-TprQAArfLlAl~ey~~rLRa 397 (408)
..+. .+..-+..|..++..|+..+.+++..-.+++.-.-+-- ++.+--+|+--+.+|...++.
T Consensus 329 d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~ 393 (411)
T d1ux5a_ 329 DKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKK 393 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 12334566778888899999988877666665553322 356677899888888777654
Done!