Query 015386
Match_columns 408
No_of_seqs 133 out of 1032
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02491 carotenoid 9,10(9',10 100.0 5E-102 1E-106 810.4 44.1 406 1-408 139-545 (545)
2 PLN02258 9-cis-epoxycarotenoid 100.0 1.8E-97 4E-102 778.0 41.3 382 2-405 202-589 (590)
3 COG3670 Lignostilbene-alpha,be 100.0 3.7E-92 8E-97 695.8 28.3 346 35-400 133-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2.7E-88 6E-93 704.2 32.2 348 33-399 117-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 1.7E-83 3.6E-88 679.2 38.1 348 35-399 177-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 9.5E-51 2.1E-55 420.0 22.1 379 4-405 198-581 (582)
7 KOG1285 Beta, beta-carotene 15 99.8 2.2E-19 4.9E-24 186.9 21.2 246 31-287 136-414 (582)
8 PF10282 Lactonase: Lactonase, 55.0 1.3E+02 0.0028 29.8 10.9 99 45-149 47-162 (345)
9 COG3823 Glutamine cyclotransfe 37.6 25 0.00054 33.0 2.3 36 42-80 96-132 (262)
10 PF02239 Cytochrom_D1: Cytochr 35.8 1.5E+02 0.0033 29.9 8.0 71 281-385 49-119 (369)
11 PF06433 Me-amine-dh_H: Methyl 35.4 4.8E+02 0.01 26.3 20.8 255 57-388 18-291 (342)
12 PF13570 PQQ_3: PQQ-like domai 31.1 57 0.0012 21.3 2.7 27 37-63 12-38 (40)
13 PF09843 DUF2070: Predicted me 28.4 68 0.0015 29.0 3.6 50 322-376 38-87 (179)
14 PF02736 Myosin_N: Myosin N-te 26.8 63 0.0014 21.8 2.4 30 334-370 3-32 (42)
15 PF14839 DOR: DOR family 24.5 42 0.00092 31.4 1.5 15 344-358 2-16 (216)
16 COG5375 Uncharacterized protei 21.2 95 0.0021 28.9 3.0 87 10-98 44-142 (216)
17 TIGR02276 beta_rpt_yvtn 40-res 20.7 1.8E+02 0.004 18.5 3.8 28 362-392 12-39 (42)
No 1
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=4.5e-102 Score=810.41 Aligned_cols=406 Identities=81% Similarity=1.325 Sum_probs=361.0
Q ss_pred CCceeccccchhHHHHHHHHHHHHhccccccCCCCCcceeEEEEECCEEEEEEcCCcCEEEec-cCCCCcccccceeccc
Q 015386 1 MFLQIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKV-LKDGDLQTLGMLDYDK 79 (408)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp-~~~~tLeT~g~~d~~~ 79 (408)
+|+.|+.++|++|+++..+..+|..++.++...++|+|||||++|+||||||||+|.||++++ +| .||||+|.+||+|
T Consensus 139 ~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g 217 (545)
T PLN02491 139 KFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDK 217 (545)
T ss_pred cccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCC
Confidence 356688899999999999999999888887777789999999999999999999999999875 44 4999999999999
Q ss_pred ccCCCCCCCceecCCCCcEEEEEecCCCCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHH
Q 015386 80 RLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEM 159 (408)
Q Consensus 80 ~l~~~~tAHP~~Dp~tGel~~fg~~~~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~ 159 (408)
+|..+||||||+||+|||+++|||+..+|+++|+++|++|++.+.+++++|.++|||||+|||||+||+++|+.+++.+|
T Consensus 218 ~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~ 297 (545)
T PLN02491 218 RLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEM 297 (545)
T ss_pred ccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHH
Confidence 99889999999999999999999988779999999999999998899999999999999999999999999999999999
Q ss_pred HHcCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccCCCeEEEEEEeccCCCCcccCCcccccccc
Q 015386 160 VKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLED 239 (408)
Q Consensus 160 l~~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~~~~ivvd~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
+++++.++.|+|++++||+||||++++.++++||++|+||+||++||||++ |+||+|+|++++++++...+...+..+.
T Consensus 298 ~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~ 376 (545)
T PLN02491 298 VKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLEN 376 (545)
T ss_pred hhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccccccccc
Confidence 887778899999999999999998755568999999999999999999987 8999999999887654433332222334
Q ss_pred ccccEEEEEEeCCCCCeeEEeeCCCCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeeeecCce
Q 015386 240 QTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNV 319 (408)
Q Consensus 240 ~~~~l~R~~idl~tg~v~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~ 319 (408)
..++|+|||||+++|+++++.|++.++|||+||++|.||+|||+|++..++...+++|+|+|+++++.+|+.+.+.+++.
T Consensus 377 ~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~ 456 (545)
T PLN02491 377 FGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNV 456 (545)
T ss_pred cCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccce
Confidence 56899999999999999999999999999999999999999999999877666789999999997433344322234445
Q ss_pred eeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 015386 320 KGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 399 (408)
Q Consensus 320 ~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p~ 399 (408)
.+.||+++++|+|||+||||+++.+++|||||||++|+|..+++|+|+||||++|++|||||++||+|||+||||+|+++
T Consensus 457 ~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~ 536 (545)
T PLN02491 457 KGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTE 536 (545)
T ss_pred eEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCH
Confidence 56899999999999999999754125899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcC
Q 015386 400 EQLEELAKL 408 (408)
Q Consensus 400 ~~~~~~~~~ 408 (408)
+++++|+.+
T Consensus 537 ~~l~~~~~~ 545 (545)
T PLN02491 537 EQLQEQAKL 545 (545)
T ss_pred HHHHHhhcC
Confidence 999988654
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=1.8e-97 Score=778.02 Aligned_cols=382 Identities=41% Similarity=0.745 Sum_probs=344.0
Q ss_pred Cce-eccccchhHHHHHHHHHHHHhccccccCCCCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceecccc
Q 015386 2 FLQ-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKR 80 (408)
Q Consensus 2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~~ 80 (408)
|++ |+++.+.++++...+.+.|.+++.+|.+.++|+|||||++|+||||||||+|.||++|++++.||||+|.+||+|+
T Consensus 202 ~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~ 281 (590)
T PLN02258 202 FPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQ 281 (590)
T ss_pred cccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCc
Confidence 455 7777788889999999999999999988888999999999999999999999999999876569999999999999
Q ss_pred cCCCCCCCceecCCCCcEEEEEecC-CCCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHH
Q 015386 81 LNHPFTAHPKIDPYTDEMFTFGYTQ-TPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEM 159 (408)
Q Consensus 81 l~~~~tAHP~~Dp~tGel~~fg~~~-~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~ 159 (408)
|..+||||||+||.|||+++|+|+. ..|+++|+++|++|++.+.+++++|+++|||||+|||||+||+++|+.+|+.+|
T Consensus 282 l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~ 361 (590)
T PLN02258 282 LDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEM 361 (590)
T ss_pred cCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccceeccCceEEEEccCceEcHHHH
Confidence 9889999999999999999999985 468999999999999999999999999999999999999999999999999998
Q ss_pred HHcCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccC-CCeEEEEEEeccCCCCcccCCccccccc
Q 015386 160 VKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNGPLKETLE 238 (408)
Q Consensus 160 l~~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~-~~~ivvd~~~~~~~~~~~~~~~~~~~~~ 238 (408)
+. |+.++.|+|++++||+||||++++.++++||++|+||+||++||||++ +++||+|.|++.+++. .+. +...
T Consensus 362 ~~-g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~-~~~----~~~~ 435 (590)
T PLN02258 362 IR-GGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDS-IFN----ESDE 435 (590)
T ss_pred hh-CCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhh-hcc----cccc
Confidence 75 568899999999999999999865578999999999999999999974 4679999999877531 111 1123
Q ss_pred cccccEEEEEEeCCCCCeeEEeeCC---CCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeeee
Q 015386 239 DQTTELYEMRFNMKTGLASQKKLSP---ACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEV 315 (408)
Q Consensus 239 ~~~~~l~R~~idl~tg~v~~~~l~~---~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~ 315 (408)
..+++|+|||||+++|+++++.+.+ .++|||+||++|.||+|||+|+++.++...+++|+|+|+++ |+.
T Consensus 436 ~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~t----g~~---- 507 (590)
T PLN02258 436 SLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLST----GEV---- 507 (590)
T ss_pred cccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCC----CcE----
Confidence 4568999999999999998887765 79999999999999999999998877777799999999996 552
Q ss_pred cCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCcc
Q 015386 316 GGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGI 395 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~ 395 (408)
+.|++|+++|+|||+||||+++ +.+|||||||++|+|..+++|+|+||||++|+ +|||++||++||+||||+
T Consensus 508 -----~~~~~g~g~~~gEPvFVPr~~~-~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~--~VArv~LP~rVP~GFHG~ 579 (590)
T PLN02258 508 -----KKYIYGEGRYGGEPFFVPRGSG-SEAEDDGYILAFVHDEEKGKSELQVVNAVNLE--LEATVKLPSRVPYGFHGT 579 (590)
T ss_pred -----EEEECCCCccccCCEeccCCCC-CcccCCcEEEEEEEECCCCceEEEEEeCCCCc--ccEEEECCCCCCCccccc
Confidence 4799999999999999999876 23599999999999999999999999999998 799999999999999999
Q ss_pred ccChhhHHHH
Q 015386 396 FLSEEQLEEL 405 (408)
Q Consensus 396 w~p~~~~~~~ 405 (408)
|+++++|++|
T Consensus 580 wv~~~~l~~q 589 (590)
T PLN02258 580 FISAEDLLKQ 589 (590)
T ss_pred ccCHHHHhhc
Confidence 9999999776
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-92 Score=695.82 Aligned_cols=346 Identities=40% Similarity=0.677 Sum_probs=308.2
Q ss_pred CCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceeccc-ccCCCCCCCceecCCCCcEEEEEecCCCCeEEEE
Q 015386 35 NGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDK-RLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYR 113 (408)
Q Consensus 35 ~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~-~l~~~~tAHP~~Dp~tGel~~fg~~~~~~~~~~~ 113 (408)
+|.|||||+.|+++|+||||+|.||+||| .||+|+|+.+|+| .+..+||||||+||+|||++||||+...++++|+
T Consensus 133 kn~aNTsVi~~~~~LlalwEgG~pyrLdp---~tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~ 209 (490)
T COG3670 133 KNAANTSVIMHGDELLALWEGGSPYRLDP---DTLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYY 209 (490)
T ss_pred ccCCccceEeehhHHHHHHhcCCccccCh---hHhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEE
Confidence 58999999999999999999999999999 4999999999999 5556899999999999999999999988899999
Q ss_pred EEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCH-HHHHHc--CCeeeEECCCCCcEEEEEeCcCCCCCce
Q 015386 114 VISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQ-KEMVKE--NKLIYAFDPTIKARFGVLPRYARDDLQI 190 (408)
Q Consensus 114 ~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~-~~~l~~--g~~~~~~~~~~~t~~~vipR~~~~~~~v 190 (408)
++|++|++++.+.+++|++.|||||++|+||+||+++|+.+|+ .++|.. ...++.|+|+.|+||.||||.+ + +++
T Consensus 210 ~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~i 287 (490)
T COG3670 210 VVDADGELRRTVDIPLPGPPMMHDFAITENYLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEI 287 (490)
T ss_pred EECCCCcEEEeeeeecCCCccceeeeecCceEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-Cce
Confidence 9999999999999999999999999999999999999999995 344432 3568999999999999999997 3 689
Q ss_pred EEEEcCCeeEEecccccccCCCeEEEEEEeccCCCCccc-CCccccc--cccccccEEEEEEeCCCCCeeEEeeCCCCCC
Q 015386 191 RWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMF-NGPLKET--LEDQTTELYEMRFNMKTGLASQKKLSPACVD 267 (408)
Q Consensus 191 ~~~~~~~~~~~H~~NAyE~~~~~ivvd~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~R~~idl~tg~v~~~~l~~~~~E 267 (408)
||||+++||+||+.||||++|+.|.+|.|+++++....- .+..... ....+++|+||+|||+||++.++.+.++.+|
T Consensus 288 rwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~E 367 (490)
T COG3670 288 RWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACE 367 (490)
T ss_pred eEEecCCeEEEEecceeecCCCcEEEEEEeecccccccccccccccccccccCCCcceEEEEccccchhHHHhhhhhhcc
Confidence 999999999999999999987889999999998642111 1111111 1123789999999999999999999999999
Q ss_pred CCccCCCCCCCCCcEEEEeccCCC-CC---CCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCcccceEEeeCCCCC
Q 015386 268 FPRINEHYMGRKQRYVYGSILENI-AK---VTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSS 343 (408)
Q Consensus 268 fP~in~~~~gr~yry~Y~~~~~~~-~~---~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~ 343 (408)
||+||+++.|++|||+|++...+. .. ++.|+|+|++| |+. +.|.+++++|+|||+|||||++
T Consensus 368 FP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~t----g~~---------~~~~~g~~~y~~E~vfvPrpg~- 433 (490)
T COG3670 368 FPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLET----GTS---------QVYSFGPRGYGSEPVFVPRPGS- 433 (490)
T ss_pred cCccChhhcCCceEEEEEecccCCccchhhcceeEEEeccC----CcE---------EEEecCCCCcccccccccCCCC-
Confidence 999999999999999999976642 33 44599999997 653 4799999999999999999876
Q ss_pred CCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChh
Q 015386 344 TSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEE 400 (408)
Q Consensus 344 ~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p~~ 400 (408)
.+|||||||++|+|.+.++|+|+||||+++++|||||++||++||+||||+|++.+
T Consensus 434 -~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 434 -SAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred -CcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEeccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2.7e-88 Score=704.23 Aligned_cols=348 Identities=41% Similarity=0.720 Sum_probs=270.1
Q ss_pred CCCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceecccccC-CCCCCCceecCCCCcEEEEEecCC---CC
Q 015386 33 YGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQT---PP 108 (408)
Q Consensus 33 ~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~~l~-~~~tAHP~~Dp~tGel~~fg~~~~---~~ 108 (408)
..+|+|||||++|+||||||||+|.||++|| .||||+|..+|++.++ ..||||||+||+|||+|+|+++.+ .+
T Consensus 117 ~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp---~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~ 193 (486)
T PF03055_consen 117 KPKNNANTNVIPHGGRLLALWEGGPPYELDP---DTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSP 193 (486)
T ss_dssp GB-----SEEEEETTEEEEE-TTSEEEEEET---TTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSE
T ss_pred cCCCCceeeeEEECCEEEEEEcCCCCEEech---hHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCC
Confidence 3469999999999999999999999999999 5999999999999998 689999999999999999999854 37
Q ss_pred eEEEEEEcCCCCeeeeEEE-eeCCccceeeeeecCCEEEEEeCCcccCHHHHHHcCC--eeeEECCCCCcEEEEEeCcCC
Q 015386 109 YVTYRVISKDGFMHDPVPI-TMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENK--LIYAFDPTIKARFGVLPRYAR 185 (408)
Q Consensus 109 ~~~~~~~d~~g~~~~~~~~-~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~l~~g~--~~~~~~~~~~t~~~vipR~~~ 185 (408)
+++++++|++|+++++.+. ++|.++|||||+|||||+||+++|+++|+.+++++.. .+++|+|+++++|+||||+++
T Consensus 194 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~ 273 (486)
T PF03055_consen 194 KLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVVFPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGG 273 (486)
T ss_dssp EEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEEEEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTS
T ss_pred cEEEEEEcCccceeEEeeeccCCCCcccccccccCceEEEEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCC
Confidence 9999999999987777776 8999999999999999999999999999999986432 789999999999999999985
Q ss_pred CCCceEEEEcCCeeEEecccccccCCC--eEEEEEEeccCCCCcccC--Ccc----ccccccccccEEEEEEeCC--CCC
Q 015386 186 DDLQIRWFELPNCYIFHNANAWEEEED--EVVLITCRVRNPDLDMFN--GPL----KETLEDQTTELYEMRFNMK--TGL 255 (408)
Q Consensus 186 ~~~~v~~~~~~~~~~~H~~NAyE~~~~--~ivvd~~~~~~~~~~~~~--~~~----~~~~~~~~~~l~R~~idl~--tg~ 255 (408)
+ ..++||++|+||+||++||||+++| +||+|+|+|++..+.... ... ........++|+||+||++ +|+
T Consensus 274 ~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~ 352 (486)
T PF03055_consen 274 K-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDDPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGR 352 (486)
T ss_dssp C-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECSSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCE
T ss_pred C-ceeEEEecCChhhccccceeecCCCceEEEEEEeecCCcccccccchhcccccccccccCCCceEEEEEEccccccce
Confidence 3 6899999999999999999999853 999999999987632110 000 1112356789999999999 888
Q ss_pred eeEEeeCCC-CCCCCccCCCCCCCCCcEEEEeccCC----CCCCCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCc
Q 015386 256 ASQKKLSPA-CVDFPRINEHYMGRKQRYVYGSILEN----IAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRF 330 (408)
Q Consensus 256 v~~~~l~~~-~~EfP~in~~~~gr~yry~Y~~~~~~----~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (408)
++++.|++. ++|||+||+++.|++|||+|+++... ..++++|+|+|+++ |+. +.|.++++++
T Consensus 353 ~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~~~~~l~k~D~~t----g~~---------~~~~~~~~~~ 419 (486)
T PF03055_consen 353 VSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERSPGFPFNGLVKVDLET----GEV---------QRWSFGPGCF 419 (486)
T ss_dssp EEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS---EEEEEEEEETTT----TEE---------EEEE-TTTEE
T ss_pred eEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCCcCcCCCEEEEEeccc----ccc---------eEEECCCCce
Confidence 988899887 69999999999999999999876543 34689999999996 542 5799999999
Q ss_pred ccceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 015386 331 GSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 399 (408)
Q Consensus 331 ~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p~ 399 (408)
++||+|||||++ .+|||||||++|+|..+++|+|+||||++|++|||||++||++||+||||+|+++
T Consensus 420 ~~EpvFVPr~~~--~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 420 PGEPVFVPRPGG--AEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp E--EEEEE-TTS---STT-EEEEEEEEETTTTCEEEEEEETTTTCE--EEEEEESS---S-SEEEEEE-
T ss_pred ecceEeccCCCC--CCCCceEEEEEEEECCCCccEEEEEeCCCCCcCceEEEECCCCCCCCccccccCC
Confidence 999999999875 8999999999999999999999999999999999999999999999999999874
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=1.7e-83 Score=679.23 Aligned_cols=348 Identities=25% Similarity=0.438 Sum_probs=291.3
Q ss_pred CCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceec-----------------------------ccccC---
Q 015386 35 NGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDY-----------------------------DKRLN--- 82 (408)
Q Consensus 35 ~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~-----------------------------~~~l~--- 82 (408)
+|+|||||++|+||||||||+|.||+||| .||||+|.+|| .|.+.
T Consensus 177 kn~ANT~V~~~gg~LlAl~E~g~P~~lDP---~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~ 253 (610)
T PLN02969 177 KNVANTSVLKWGGRLLCLWEGGEPYEIDS---GTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPK 253 (610)
T ss_pred ccCCCcceeeeCCEEEEecCCCCCeEcCc---CccceeecccccccccccccccccccccccccccccccccccccccCC
Confidence 59999999999999999999999999999 59999999999 33332
Q ss_pred CCCCCCceecCCCCcEEEEEecC-----CCCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHH
Q 015386 83 HPFTAHPKIDPYTDEMFTFGYTQ-----TPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQK 157 (408)
Q Consensus 83 ~~~tAHP~~Dp~tGel~~fg~~~-----~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~ 157 (408)
.+||||||+||.||++++|++.. ..+.+++|++|++|++.+++++++|+++|||||+|||||+||+++|+++|+.
T Consensus 254 ~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~ 333 (610)
T PLN02969 254 KRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVP 333 (610)
T ss_pred ccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHH
Confidence 46899999999999999999965 2478999999999999999999999999999999999999999999999998
Q ss_pred HHHH--cC----CeeeEECCCCCc-EEEEEeCcCCCC-CceEE---EEcC-CeeEEecccccccC--CC--eEEEEEEe-
Q 015386 158 EMVK--EN----KLIYAFDPTIKA-RFGVLPRYARDD-LQIRW---FELP-NCYIFHNANAWEEE--ED--EVVLITCR- 220 (408)
Q Consensus 158 ~~l~--~g----~~~~~~~~~~~t-~~~vipR~~~~~-~~v~~---~~~~-~~~~~H~~NAyE~~--~~--~ivvd~~~- 220 (408)
++|. .| ..+|+|+|++++ +|+||||++++. ..++| +++| +||+||++||||++ +| +|++|+|.
T Consensus 334 ~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~ 413 (610)
T PLN02969 334 GSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASAC 413 (610)
T ss_pred HHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEecc
Confidence 7553 22 256999999995 899999997532 57899 9998 59999999999963 24 59999874
Q ss_pred -ccCCCCccc------CCcccc------ccccccccEEEEEEeCC-CCCe---eEEeeC---CCCCCCCccCCCCCCCCC
Q 015386 221 -VRNPDLDMF------NGPLKE------TLEDQTTELYEMRFNMK-TGLA---SQKKLS---PACVDFPRINEHYMGRKQ 280 (408)
Q Consensus 221 -~~~~~~~~~------~~~~~~------~~~~~~~~l~R~~idl~-tg~v---~~~~l~---~~~~EfP~in~~~~gr~y 280 (408)
|+++.+... ...... ......++|+||+||++ +|++ +.+.|. +.++|||+||+++.||+|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ 493 (610)
T PLN02969 414 SYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKN 493 (610)
T ss_pred ccccccccccccccccccccCcchhcccCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcc
Confidence 554432100 000000 01123578999999997 6765 446775 779999999999999999
Q ss_pred cEEEEeccCC------CCCCCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCcccceEEeeCCC--CCCCCCCCcEE
Q 015386 281 RYVYGSILEN------IAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREP--SSTSEEDDGYL 352 (408)
Q Consensus 281 ry~Y~~~~~~------~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~--~~~~~EDDG~L 352 (408)
||+|+++.++ ..++++|+|+|+++ |+. +.|++++++|+||||||||++ + +++||||||
T Consensus 494 ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~t----g~~---------~~w~~g~~~~~~EPvFVPr~~~p~-~~~EDDG~L 559 (610)
T PLN02969 494 EYTYAAAASGSRKTLPHFPFDSVVKLDVPD----GSA---------RSWSTGARRFVGEPVFVPRKSSQG-GGEEDDGYV 559 (610)
T ss_pred eEEEEeeecCCCcccccCCcCeEEEEECCC----CCE---------EEEEeCCCCcccCCEEecCCCCCC-CCccCCcEE
Confidence 9999987642 23589999999996 552 478999999999999999952 2 378999999
Q ss_pred EEEEEeCCCCeeEEEEEeCCCCCCC--ceEEEEcCCcC--CCCCCccccCh
Q 015386 353 IFHVHDENTGKSAVYVIDAKTMSAD--PVAVIELPHRV--PYGFHGIFLSE 399 (408)
Q Consensus 353 L~~v~d~~~~~s~L~IlDA~~l~~g--pVAri~Lp~~v--P~gfHG~w~p~ 399 (408)
|++|+|..+++|+|+||||++|++| ||||++||++| |+||||+|+++
T Consensus 560 l~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 560 LVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWADE 610 (610)
T ss_pred EEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccccCC
Confidence 9999999999999999999999986 99999999998 99999999874
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-51 Score=420.02 Aligned_cols=379 Identities=39% Similarity=0.614 Sum_probs=322.9
Q ss_pred eeccccchhHHHHHHHHHHHHhccccccCCCCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCccc-ccceecccccC
Q 015386 4 QIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQT-LGMLDYDKRLN 82 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT-~g~~d~~~~l~ 82 (408)
.++++-|-+|..++.....|.++++.+...+...+|+..++..++++|+.|.++||..-...-+.+|| ++..++++++.
T Consensus 198 ~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~ 277 (582)
T KOG1285|consen 198 EIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLN 277 (582)
T ss_pred CcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccc
Confidence 37888888888888888999999999888888889999999999999999999887555443367999 99999999999
Q ss_pred CCCCCCceecCCCCcEEEEEecCC-CCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHHHH
Q 015386 83 HPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVK 161 (408)
Q Consensus 83 ~~~tAHP~~Dp~tGel~~fg~~~~-~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~l~ 161 (408)
..+.|||++||.||+++...|+.. .+++.|..++..|.......+....+.++||||+|||++|+++.+...++..|..
T Consensus 278 ~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~ 357 (582)
T KOG1285|consen 278 LSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIR 357 (582)
T ss_pred hhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccCceEEEEEEEechhhhhc
Confidence 889999999999999999999875 4799999999998877766665558999999999999999999999999998775
Q ss_pred cCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccCCC--eEEEEEEeccCCCCcccCCcccccccc
Q 015386 162 ENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEED--EVVLITCRVRNPDLDMFNGPLKETLED 239 (408)
Q Consensus 162 ~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~~~--~ivvd~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
.++ ++..+..+..|+++.++...+...++|...+++++||..|+||+... +++|...+....+ ....+..+.
T Consensus 358 ~~~-p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~-----~i~~~~de~ 431 (582)
T KOG1285|consen 358 DTS-PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTS-----TIFRESDEL 431 (582)
T ss_pred ccc-eeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccc-----hhhcccccc
Confidence 444 78889999999999999988888999999999999999999996422 4554433332221 111122345
Q ss_pred ccccEEEEEEeCCCCCeeEEeeCC-CCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeeeecCc
Q 015386 240 QTTELYEMRFNMKTGLASQKKLSP-ACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGN 318 (408)
Q Consensus 240 ~~~~l~R~~idl~tg~v~~~~l~~-~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~~~~ 318 (408)
...++...|+++.+|...++.... .++|+++||..+.||+|||+|++..++++.+++++|+|+.+ |+.
T Consensus 432 ~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~----g~~------- 500 (582)
T KOG1285|consen 432 LGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVT----GEV------- 500 (582)
T ss_pred hhceeeeeeecccccccccceeecccccccccccceeecccceEEEEEecCCccCCCeEEEEEecC----Cce-------
Confidence 567899999999998876665544 59999999999999999999999988888899999999997 542
Q ss_pred eeeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccC
Q 015386 319 VKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS 398 (408)
Q Consensus 319 ~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p 398 (408)
..|..+.+++.|||+|||+|++ .+|||||++++|++....+|+|+||||++++ ++||+++|.++|+||||.|++
T Consensus 501 --~~w~~~~~~~~GEP~FVP~p~~--~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~--~~ar~~vp~rvP~gfHG~f~~ 574 (582)
T KOG1285|consen 501 --KKWREGGGRPGGEPIFVPRPGT--LEEDDGYIVSVVHDESKEKSFLLILDAKTLE--EVARVEVPTRVPYGFHGTFVS 574 (582)
T ss_pred --eeEecCCCccCCCceEecCCCC--cccCCcEEEEEEEcCCCCcccEEEEeccccc--eeeEEecCCCCCCccceeEec
Confidence 3688888888889999999854 8999999999999999999999999999986 999999999999999999999
Q ss_pred hhhHHHH
Q 015386 399 EEQLEEL 405 (408)
Q Consensus 399 ~~~~~~~ 405 (408)
+.+++.|
T Consensus 575 ~~~~~~~ 581 (582)
T KOG1285|consen 575 TTDLATQ 581 (582)
T ss_pred ccccccc
Confidence 9988765
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.2e-19 Score=186.87 Aligned_cols=246 Identities=18% Similarity=0.226 Sum_probs=167.4
Q ss_pred cCCCCCcceeEEEEE-CCEEEEEEcCCcCEEEeccCCCCcccccceeccc-ccC-CCCCCCceecCCCCcEEE-EEec-C
Q 015386 31 FSYGNGAGNTALIYH-HGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDK-RLN-HPFTAHPKIDPYTDEMFT-FGYT-Q 105 (408)
Q Consensus 31 ~~~~~~~ANt~V~~~-~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~-~l~-~~~tAHP~~Dp~tGel~~-fg~~-~ 105 (408)
-...+|+||+++.+. |++|||.+|...-+++|+ +||+|+..++|.+ .+. ..++|||+.|+. |++++ +|.. +
T Consensus 136 g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~---~tl~t~~~~~~~k~~v~~~~~gah~~~d~~-G~~~g~~g~~~~ 211 (582)
T KOG1285|consen 136 GESIRDNANPNFTPVGGHHLYAGTETPHAVKIDP---GTLETTYKVRFTKTLVQEHTAGAHPHPDEI-GTVYGHFGIARF 211 (582)
T ss_pred ccccccCCCcceeecCCCeeEecCCCceeEEecC---cccceeEeeccccceeeeeecccCCcccCc-ccEEeeechhhc
Confidence 344579999999999 899999999988888888 5999999999999 444 467899999985 99999 6664 3
Q ss_pred CCC---eEEEEEEcCCCCe----------eeeEEE---eeCCccceeeeeecCCEEEEEeCCcccCHHHHHHcC------
Q 015386 106 TPP---YVTYRVISKDGFM----------HDPVPI---TMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKEN------ 163 (408)
Q Consensus 106 ~~~---~~~~~~~d~~g~~----------~~~~~~---~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~l~~g------ 163 (408)
+.. ..+.....+.|.. .+...+ ..+++.|||+|++||||+|++++|+++++.+++...
T Consensus 212 ~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g 291 (582)
T KOG1285|consen 212 GLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTG 291 (582)
T ss_pred cccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCccccccc
Confidence 322 2222222222211 011011 357899999999999999999999999998876421
Q ss_pred ---CeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccCCCeEEEEEEeccCCCCcccCCccccccccc
Q 015386 164 ---KLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQ 240 (408)
Q Consensus 164 ---~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
..++.|.|....+++++.++++...+++- .+++++|||+||||++ +.||+|.|++.+... +..+. ...-..
T Consensus 292 ~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~--~~~~~t~hh~na~eed-g~vi~D~~~~~~~~~-~~~~~--~p~~~~ 365 (582)
T KOG1285|consen 292 EWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEED-GCVVPDLCVYFDLSE-MIRDT--SPLLYD 365 (582)
T ss_pred chhhhhhcccCCCcEEEEEeccccCccCccee--ccCcceEEEeeeeccc-CceEEEEEEEechhh-hhccc--ceeecc
Confidence 23578999999999999999865444442 3359999999999999 999999999988651 11111 011123
Q ss_pred cccEEEEEEeCCCCCeeEE---eeCCCCCCCCccCCCCCCCCCcEEEEec
Q 015386 241 TTELYEMRFNMKTGLASQK---KLSPACVDFPRINEHYMGRKQRYVYGSI 287 (408)
Q Consensus 241 ~~~l~R~~idl~tg~v~~~---~l~~~~~EfP~in~~~~gr~yry~Y~~~ 287 (408)
..+.-|+.++.++.....+ .+....+-|| ...++.-++|...+.+.
T Consensus 366 ~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v~ 414 (582)
T KOG1285|consen 366 NGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVVI 414 (582)
T ss_pred cccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEee
Confidence 3445566666554332111 1223345566 33333336777665554
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=55.03 E-value=1.3e+02 Score=29.79 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=58.4
Q ss_pred ECCEEEEEEcCC----cCEEEeccCC-CCcccccceecccccCCCCCCCceecCCCCcEEEEEecCCCCeEEEEEEcCCC
Q 015386 45 HHGKLLVLSEID----KPYVLKVLKD-GDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDG 119 (408)
Q Consensus 45 ~~grLlAl~E~g----~P~~ldp~~~-~tLeT~g~~d~~~~l~~~~tAHP~~Dp~tGel~~fg~~~~~~~~~~~~~d~~g 119 (408)
-+..|||..|.+ .-..++.+++ .+|+-++...-.| .-..|-.+||+...++.-.| ....+.++.++.+|
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g----~~p~~i~~~~~g~~l~vany--~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG----SSPCHIAVDPDGRFLYVANY--GGGSVSVFPLDDDG 120 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS----SCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTS
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC----CCcEEEEEecCCCEEEEEEc--cCCeEEEEEccCCc
Confidence 457899999963 2233333322 3566666544322 23467888987555555444 34567888888888
Q ss_pred CeeeeEE-Eee----C-----CccceeeeeecCC--EEEEEe
Q 015386 120 FMHDPVP-ITM----S-----APIMMHDFAITEN--YAIFLD 149 (408)
Q Consensus 120 ~~~~~~~-~~~----p-----~~~~iHdfa~T~n--y~V~~~ 149 (408)
.+..... +.. | ..+..|...++++ |+..++
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 8765432 211 1 3467888888854 766654
No 9
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.56 E-value=25 Score=33.04 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.3
Q ss_pred EEEECCEEEEE-EcCCcCEEEeccCCCCcccccceecccc
Q 015386 42 LIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKR 80 (408)
Q Consensus 42 V~~~~grLlAl-~E~g~P~~ldp~~~~tLeT~g~~d~~~~ 80 (408)
+..+++.+|+| |--|..|..|+ .||+++|.+.|.|+
T Consensus 96 it~~gd~~y~LTw~egvaf~~d~---~t~~~lg~~~y~Ge 132 (262)
T COG3823 96 ITKLGDYFYQLTWKEGVAFKYDA---DTLEELGRFSYEGE 132 (262)
T ss_pred eeeccceEEEEEeccceeEEECh---HHhhhhcccccCCc
Confidence 56688999988 66777899998 49999999999875
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=35.84 E-value=1.5e+02 Score=29.94 Aligned_cols=71 Identities=30% Similarity=0.439 Sum_probs=0.0
Q ss_pred cEEEEeccCCCCCCCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCC
Q 015386 281 RYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDEN 360 (408)
Q Consensus 281 ry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~ 360 (408)
||+|.++.+ ..|.++|+.+ ++. ......|.+ |+.-+ -..|.-||++.-+...
T Consensus 49 r~~yv~~rd-----g~vsviD~~~----~~~--------v~~i~~G~~---------~~~i~--~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 49 RYLYVANRD-----GTVSVIDLAT----GKV--------VATIKVGGN---------PRGIA--VSPDGKYVYVANYEPG 100 (369)
T ss_dssp SEEEEEETT-----SEEEEEETTS----SSE--------EEEEE-SSE---------EEEEE--E--TTTEEEEEEEETT
T ss_pred CEEEEEcCC-----CeEEEEECCc----ccE--------EEEEecCCC---------cceEE--EcCCCCEEEEEecCCC
Q ss_pred CCeeEEEEEeCCCCCCCceEEEEcC
Q 015386 361 TGKSAVYVIDAKTMSADPVAVIELP 385 (408)
Q Consensus 361 ~~~s~L~IlDA~~l~~gpVAri~Lp 385 (408)
.+.|+|+++++ +|.++...
T Consensus 101 ----~v~v~D~~tle--~v~~I~~~ 119 (369)
T PF02239_consen 101 ----TVSVIDAETLE--PVKTIPTG 119 (369)
T ss_dssp ----EEEEEETTT----EEEEEE--
T ss_pred ----ceeEecccccc--ceeecccc
No 11
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=35.38 E-value=4.8e+02 Score=26.30 Aligned_cols=255 Identities=17% Similarity=0.205 Sum_probs=117.8
Q ss_pred cCEEEeccCCCCcccccceecccccCCCCCCCceecCCCCcEEEEEe--cCC---CCeEEEEEEcCCCCeeeeEEEeeCC
Q 015386 57 KPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGY--TQT---PPYVTYRVISKDGFMHDPVPITMSA 131 (408)
Q Consensus 57 ~P~~ldp~~~~tLeT~g~~d~~~~l~~~~tAHP~~Dp~tGel~~fg~--~~~---~~~~~~~~~d~~g~~~~~~~~~~p~ 131 (408)
+-|.+|.+ +..-+|..+ ..+.+|..+.|+..++|.-.. +.+ ...=.+-++|.+.- .....+.+|.
T Consensus 18 rv~viD~d---~~k~lGmi~------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~ 87 (342)
T PF06433_consen 18 RVYVIDAD---SGKLLGMID------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPP 87 (342)
T ss_dssp EEEEEETT---TTEEEEEEE------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETT
T ss_pred eEEEEECC---CCcEEEEee------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCC
Confidence 45667763 666666655 346788888888677776543 221 11122444555432 2223345552
Q ss_pred ------ccceeeeeecCCEEEEEeCCcccCHHHHHHcCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEeccc
Q 015386 132 ------PIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNAN 205 (408)
Q Consensus 132 ------~~~iHdfa~T~ny~V~~~~P~~~~~~~~l~~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~N 205 (408)
-.+-+.+++|. .++..+.+|=.--+-+.||+-..+ .-++-+++|.|+...-
T Consensus 88 k~R~~~~~~~~~~~ls~-------------------dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP-- 144 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSA-------------------DGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP-- 144 (342)
T ss_dssp S-B--BS--GGGEEE-T-------------------TSSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE--
T ss_pred cchheecccccceEEcc-------------------CCcEEEEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe--
Confidence 12344444442 234444455444588999998863 4567888987754321
Q ss_pred ccccCCCeEEEEEEeccCCCCcccCCccccccccccccEEEEEEeCCCCCeeE-EeeCCCCCCCCccCCCCCCCCCcEEE
Q 015386 206 AWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQ-KKLSPACVDFPRINEHYMGRKQRYVY 284 (408)
Q Consensus 206 AyE~~~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~tg~v~~-~~l~~~~~EfP~in~~~~gr~yry~Y 284 (408)
+.++ . +-+.|- .+.+..+++|-+....+. +...+..-|-.-.++.+.+...+|.|
T Consensus 145 -~~~~--~--F~~lC~-------------------DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 145 -SGNR--G--FSMLCG-------------------DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp -EETT--E--EEEEET-------------------TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred -cCCC--c--eEEEec-------------------CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE
Confidence 1111 1 111121 234556666643332211 12333222322234555566677777
Q ss_pred EeccCCCCCCCeEEEEecccCCCc-CceeeeecCc-eeeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCC-
Q 015386 285 GSILENIAKVTGMIKFDLRAEPET-GKTKLEVGGN-VKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT- 361 (408)
Q Consensus 285 ~~~~~~~~~~~~lvk~D~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~- 361 (408)
..-. ..+.-+|+...... +..-...+.. ..+.|.+| | + +++= -....|-|-++.+....
T Consensus 201 ~Sy~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-G-~--Q~~A--------~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 201 VSYE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-G-W--QLIA--------YHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp EBTT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--S-S--S-EE--------EETTTTEEEEEEEE--TT
T ss_pred EecC------CEEEEEeccCCcccccCcccccCccccccCcCCc-c-e--eeee--------eccccCeEEEEecCCCCC
Confidence 4421 23555565531100 0000000000 00123222 1 1 1111 11234556666665443
Q ss_pred ----CeeEEEEEeCCCCCCCceEEEEcCCcC
Q 015386 362 ----GKSAVYVIDAKTMSADPVAVIELPHRV 388 (408)
Q Consensus 362 ----~~s~L~IlDA~~l~~gpVAri~Lp~~v 388 (408)
..+|+|++|.+ +..-|+|+.|++.+
T Consensus 263 sHKdpgteVWv~D~~--t~krv~Ri~l~~~~ 291 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLK--THKRVARIPLEHPI 291 (342)
T ss_dssp -TTS-EEEEEEEETT--TTEEEEEEEEEEEE
T ss_pred CccCCceEEEEEECC--CCeEEEEEeCCCcc
Confidence 23699999999 66689999998653
No 12
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.06 E-value=57 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=19.3
Q ss_pred cceeEEEEECCEEEEEEcCCcCEEEec
Q 015386 37 AGNTALIYHHGKLLVLSEIDKPYVLKV 63 (408)
Q Consensus 37 ~ANt~V~~~~grLlAl~E~g~P~~ldp 63 (408)
..+.++...+|++|+.++.|.-|.+|+
T Consensus 12 ~~~~~~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 12 PIWSSPAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp ---S--EECTSEEEEE-TTSEEEEEET
T ss_pred CcCcCCEEECCEEEEEcCCCEEEEEeC
Confidence 455677889999999999999999987
No 13
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=28.35 E-value=68 Score=28.96 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=38.0
Q ss_pred EEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCC
Q 015386 322 IFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSA 376 (408)
Q Consensus 322 ~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~ 376 (408)
.+.++-|+..++|.+-+. .+=+++-+.+.+.+....++.|+++|+-+|+.
T Consensus 38 ~~~~~~G~~~~~~~~~~~-----~~lg~~gi~~~~v~~~g~~~~lv~~DsNNm~~ 87 (179)
T PF09843_consen 38 EYPLEVGYAEAEPFLGEH-----EGLGIGGISALVVEVGGQRSALVLADSNNMEP 87 (179)
T ss_pred ccccccceEeccCCCCCC-----CCcCccccEEEEEEeCCcEEEEEEEECCCCCH
Confidence 355666766677764444 23478888999999888999999999999974
No 14
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=26.79 E-value=63 Score=21.84 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=20.2
Q ss_pred eEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEe
Q 015386 334 AVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVID 370 (408)
Q Consensus 334 PvFVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlD 370 (408)
-++||.+ .+||+++-+.+...+.-.+-..|
T Consensus 3 ~vWvpD~-------~egfv~g~I~~~~g~~vtV~~~~ 32 (42)
T PF02736_consen 3 WVWVPDP-------KEGFVKGEIIEEEGDKVTVKTED 32 (42)
T ss_dssp EEEEEES-------SSSEEEEEEEEEESSEEEEEETT
T ss_pred EEEEeCC-------cccEEEEEEEEEcCCEEEEEECC
Confidence 3678875 56999999997655554444444
No 15
>PF14839 DOR: DOR family
Probab=24.46 E-value=42 Score=31.45 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.0
Q ss_pred CCCCCCcEEEEEEEe
Q 015386 344 TSEEDDGYLIFHVHD 358 (408)
Q Consensus 344 ~~~EDDG~LL~~v~d 358 (408)
+++|||||||+=+-+
T Consensus 2 ~e~edD~WilVD~~~ 16 (216)
T PF14839_consen 2 SEEEDDEWILVDFID 16 (216)
T ss_pred CccccCCeEEEEecC
Confidence 368999999998887
No 16
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.18 E-value=95 Score=28.93 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHHhccccccCCCCC-cceeEEEEECCEEEEEEcCCcCEEEeccC-------C--CCcccccc-eecc
Q 015386 10 GLFGLLMVNMTLLRESFKVLDFSYGNG-AGNTALIYHHGKLLVLSEIDKPYVLKVLK-------D--GDLQTLGM-LDYD 78 (408)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ANt~V~~~~grLlAl~E~g~P~~ldp~~-------~--~tLeT~g~-~d~~ 78 (408)
|...+.+...+.||+-. +..+..++ -+|.+++.-.-++....+.+.||.+.... + -|||.+-. .+++
T Consensus 44 ~~~a~~fi~~s~~rt~~--~~~~~~~a~~~~gkivm~~P~f~G~nk~~~~ysitA~RAiqD~~n~~~i~Le~i~a~~pvg 121 (216)
T COG5375 44 GGLALAFIAQSVWRTPA--LAVSLETAEIETGKIVLKKPRFNGVNKDGRPYSITAERAIQDVKNPNIITLEGILAILPVG 121 (216)
T ss_pred HHHHHhhhhhhhhhhhH--HhhcccccccccCcEEEcccccccccCCCCeeeeeHHHHhhcccCCCeEEEeeeeeeccCC
Confidence 34455666677788743 22222233 38899999999999999999999987541 0 14555432 3444
Q ss_pred cccCCCC-CCCceecCCCCcE
Q 015386 79 KRLNHPF-TAHPKIDPYTDEM 98 (408)
Q Consensus 79 ~~l~~~~-tAHP~~Dp~tGel 98 (408)
...+... ..|..+|.+++.|
T Consensus 122 ~~~~a~v~Ak~Gvyd~~~ntL 142 (216)
T COG5375 122 EDNPAQVTAKSGVYDRDTNTL 142 (216)
T ss_pred CCCceeEEeccceeecCCCee
Confidence 4333344 3588888877665
No 17
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.75 E-value=1.8e+02 Score=18.48 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred CeeEEEEEeCCCCCCCceEEEEcCCcCCCCC
Q 015386 362 GKSAVYVIDAKTMSADPVAVIELPHRVPYGF 392 (408)
Q Consensus 362 ~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gf 392 (408)
....+.++|+.+.. .+.++.+. .-|.++
T Consensus 12 ~~~~v~~id~~~~~--~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATNK--VIATIPVG-GYPFGV 39 (42)
T ss_pred CCCEEEEEECCCCe--EEEEEECC-CCCceE
Confidence 34588899998664 88888884 555543
Done!