Query 015386
Match_columns 408
No_of_seqs 133 out of 1032
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 1.4E-96 5E-101 768.4 39.4 382 2-406 136-528 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 4.9E-92 1.7E-96 729.9 38.9 342 34-398 130-489 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 8.3E-86 2.8E-90 689.6 31.2 342 33-399 127-533 (533)
4 1qks_A Cytochrome CD1 nitrite 39.8 3.1E+02 0.011 27.7 13.1 107 245-385 178-285 (567)
5 3c75_H MADH, methylamine dehyd 18.2 3E+02 0.01 26.9 7.9 79 281-385 85-168 (426)
6 2xpn_B SPT6, chromatin structu 15.6 48 0.0017 19.0 0.7 11 276-286 11-21 (26)
7 3nol_A Glutamine cyclotransfer 13.3 2.8E+02 0.0094 25.4 5.7 37 42-81 177-214 (262)
8 1fwx_A Nitrous oxide reductase 12.4 3.8E+02 0.013 27.7 7.0 25 360-386 171-195 (595)
9 3nol_A Glutamine cyclotransfer 10.9 2.2E+02 0.0074 26.2 4.2 73 40-127 90-164 (262)
10 3mbr_X Glutamine cyclotransfer 10.5 2.3E+02 0.0078 25.6 4.1 73 40-127 68-142 (243)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=1.4e-96 Score=768.40 Aligned_cols=382 Identities=39% Similarity=0.721 Sum_probs=342.2
Q ss_pred Cce-eccccchhHHHHHHHHHHHHhccccccCCCCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceecccc
Q 015386 2 FLQ-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKR 80 (408)
Q Consensus 2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~~ 80 (408)
|+. ++++.|.++++...+...|..++.++...++|+|||||++|+||||||||+|.||+++++|+.||||+|.+||+|+
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~ 215 (529)
T 3npe_A 136 FPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQ 215 (529)
T ss_dssp SCCTTTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGC
T ss_pred cccccccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCc
Confidence 444 6778888889998888889999988887778999999999999999999999999996655359999999999999
Q ss_pred cCCCCCCCceecCCCCcEEEEEecCC-CCeEEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHH
Q 015386 81 LNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEM 159 (408)
Q Consensus 81 l~~~~tAHP~~Dp~tGel~~fg~~~~-~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~ 159 (408)
|..+||||||+||+|||+++|+|+.. .|+++|++++++|++.+.+++++|.++|||||+|||||+||+++|+++|+.+|
T Consensus 216 l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~ 295 (529)
T 3npe_A 216 LGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEM 295 (529)
T ss_dssp CCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGG
T ss_pred cCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHH
Confidence 99899999999999999999999875 58999999999999988888899999999999999999999999999999999
Q ss_pred HHcCCeeeEECCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccC-CCeEEEEEEeccCCCCcccCCccccccc
Q 015386 160 VKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNGPLKETLE 238 (408)
Q Consensus 160 l~~g~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~-~~~ivvd~~~~~~~~~~~~~~~~~~~~~ 238 (408)
+. |+.++.|+|++++||+||||++++.+.++||++|+||+||++||||++ +|+||+|.|++.+.+. .++ ....
T Consensus 296 ~~-g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~ 369 (529)
T 3npe_A 296 LR-GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADS-IFN----ESDE 369 (529)
T ss_dssp TT-TCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCC-SCC----SSSS
T ss_pred hC-CCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchh-hhh----ccch
Confidence 75 678999999999999999999865568999999999999999999985 3789998888765431 111 1123
Q ss_pred cccccEEEEEEeCCCCCeeEEeeC----CCCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeee
Q 015386 239 DQTTELYEMRFNMKTGLASQKKLS----PACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLE 314 (408)
Q Consensus 239 ~~~~~l~R~~idl~tg~v~~~~l~----~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~ 314 (408)
...++|+||+||+.+|+++++.|. +.++|||+||++|.||+|||+|+++.++...+++|+|+|++| |+.
T Consensus 370 ~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~t----g~~--- 442 (529)
T 3npe_A 370 RLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST----GEL--- 442 (529)
T ss_dssp CCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTT----CCE---
T ss_pred hhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCC----Cce---
Confidence 456789999999999999888887 488999999999999999999999887667789999999996 552
Q ss_pred ecCceeeEEEcCCCCcccceEEeeCCC----CCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCC
Q 015386 315 VGGNVKGIFDLGPGRFGSEAVFVPREP----SSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPY 390 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~EPvFVPrp~----~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~ 390 (408)
+.||+++++|+|||||||||+ + ++|||||||++|+|..+++|+|+||||++|+ +|||++||++||+
T Consensus 443 ------~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~ 512 (529)
T 3npe_A 443 ------TKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPF 512 (529)
T ss_dssp ------EEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEEEEEEEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCC
T ss_pred ------EEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEEEEEEEECCCCcEEEEEEeCCCCc--cceEEECCCCCCC
Confidence 479999999999999999987 5 7999999999999999999999999999998 7999999999999
Q ss_pred CCCccccChhhHHHHh
Q 015386 391 GFHGIFLSEEQLEELA 406 (408)
Q Consensus 391 gfHG~w~p~~~~~~~~ 406 (408)
||||+|+++++|+.|+
T Consensus 513 GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 513 GFHGTFITGQELEAQA 528 (529)
T ss_dssp CSCEEEEEHHHHTTCC
T ss_pred CccccccCHHHhhhhh
Confidence 9999999999998875
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=4.9e-92 Score=729.87 Aligned_cols=342 Identities=26% Similarity=0.451 Sum_probs=308.0
Q ss_pred CCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceeccccc-C-CCCCCCceecCC------CCcEEEEEecC
Q 015386 34 GNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRL-N-HPFTAHPKIDPY------TDEMFTFGYTQ 105 (408)
Q Consensus 34 ~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~~l-~-~~~tAHP~~Dp~------tGel~~fg~~~ 105 (408)
.+|+|||||++|+||||||||++.||++|| .||||+|..+|+|+| + ..||||||+||+ ||||+|||++.
T Consensus 130 ~~~~aNT~v~~~~g~llAl~E~~~p~~ldp---~tLeT~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~ 206 (490)
T 2biw_A 130 LKNIANTNITYWGDRLLALWEGGQPHRLEP---SNLATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKS 206 (490)
T ss_dssp BCCCCCSEEEEETTEEEEECTTSCCEEECT---TTCCEEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEE
T ss_pred cCCCCEEEEEEECCEEEEEEcCCCCEeccc---ccccEeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecC
Confidence 368999999999999999999999999999 599999999999999 5 489999999999 99999999987
Q ss_pred CCCe-EEEEEEcCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCcccCHHHHHHcC---CeeeEECCCCCcEEEEEe
Q 015386 106 TPPY-VTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKEN---KLIYAFDPTIKARFGVLP 181 (408)
Q Consensus 106 ~~~~-~~~~~~d~~g~~~~~~~~~~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~l~~g---~~~~~~~~~~~t~~~vip 181 (408)
+++. ++|+++|++|++.+..++++|.++|||||+|||||+||+++|+++|+.+|++++ ..++.|+|++++||+|||
T Consensus 207 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~Vip 286 (490)
T 2biw_A 207 SLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVP 286 (490)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEE
T ss_pred CCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeeccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEE
Confidence 6554 889999999999998889999999999999999999999999999999988643 357999999999999999
Q ss_pred CcCCCCCceEEEEcCCeeEEecccccccCCCeEEEEEEeccCCCC-cccCCcccc--ccccccccEEEEEEeCCCCCeeE
Q 015386 182 RYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDL-DMFNGPLKE--TLEDQTTELYEMRFNMKTGLASQ 258 (408)
Q Consensus 182 R~~~~~~~v~~~~~~~~~~~H~~NAyE~~~~~ivvd~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~R~~idl~tg~v~~ 258 (408)
|+ + +.++||++|+||+||++||||++ |+||+|+|+|++.++ .... ...+ ....+.++|+||+||+++|++++
T Consensus 287 R~-~--~~v~~f~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~R~~i~l~~g~v~~ 361 (490)
T 2biw_A 287 RD-G--GEIKRIPVQAGFVFHHANAFEEN-GKIILDSICYNSLPQVDTDG-DFRSTNFDNLDPGQLWRFTIDPAAATVEK 361 (490)
T ss_dssp TT-S--CCCEEEEECCCEEEEEEEEEEET-TEEEEEEEEESCCCCCCTTC-CGGGCCGGGSCCCEEEEEEEETTTTEEEE
T ss_pred CC-C--CccEEEecCCCeEEecccceecC-CeEEEEEeccCCcccccccc-cccccccccCCCceEEEEEEECCCCceEE
Confidence 99 3 46899999999999999999987 999999999988653 1111 1111 12345689999999999999999
Q ss_pred EeeCCCCCCCCccCCCCCCCCCcEEEEeccC---CCCCCCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCcccceE
Q 015386 259 KKLSPACVDFPRINEHYMGRKQRYVYGSILE---NIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAV 335 (408)
Q Consensus 259 ~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~---~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPv 335 (408)
+.|++.++|||+||++|.||+|||+|+++.+ ....+++|+|+|+++ |+. +.|++++++|+|||+
T Consensus 362 ~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~K~D~~t----g~~---------~~~~~g~g~~~~EPv 428 (490)
T 2biw_A 362 QLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLES----GTE---------TLRSFAPHGFAGEPI 428 (490)
T ss_dssp EEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEEEEETTT----TEE---------EEEECTTTEECCCCE
T ss_pred EeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEEEEECCC----CCE---------EEEECCCCccccCCE
Confidence 9999999999999999999999999999875 345689999999996 552 478899999999999
Q ss_pred EeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccC
Q 015386 336 FVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS 398 (408)
Q Consensus 336 FVPrp~~~~~~EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p 398 (408)
|||||++ ++|||||||++|+|..+++|+|+||||++|++|||||++||++||+||||+|++
T Consensus 429 FVPrp~~--~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~pvArv~lP~rvP~GfHG~wv~ 489 (490)
T 2biw_A 429 FVPRPGG--VAEDDGWLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWAQ 489 (490)
T ss_dssp EEECTTC--CSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCCSEEEECSSCCCCCCCEEEEE
T ss_pred EecCCCC--CCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCceEEEeCCCcCCCCccccccC
Confidence 9999875 899999999999999999999999999999999999999999999999999986
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=8.3e-86 Score=689.58 Aligned_cols=342 Identities=18% Similarity=0.280 Sum_probs=275.6
Q ss_pred CCCCcceeEEEEECCEEEEEEcCCcCEEEeccCCCCcccccceecccccC-CCCCCCceecCCCCcEEEEEecCCC---C
Q 015386 33 YGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQTP---P 108 (408)
Q Consensus 33 ~~~~~ANt~V~~~~grLlAl~E~g~P~~ldp~~~~tLeT~g~~d~~~~l~-~~~tAHP~~Dp~tGel~~fg~~~~~---~ 108 (408)
..+|+|||||++|+||||||||++.||++|| .||||+|..||+|+|. ..||||||+|| |||++|||++.+. +
T Consensus 127 ~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp---~tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~ 202 (533)
T 3kvc_A 127 EVTDNALVNIYPVGEDYYACTETNFITKVNP---ETLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSI 202 (533)
T ss_dssp CCCCCCCSEEEEETTEEEEECSSSEEEEECT---TTCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CC
T ss_pred CCCCCCEEEEEEECCEEEEEEcCCcCEEeCh---HHcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCc
Confidence 3468999999999999999999999999998 5999999999999997 57999999999 9999999998764 3
Q ss_pred eEEEEEEcCC-----CCeee-eEEEe-----eCCccceeeeeecCCEEEEEeCCcccCHHHHHHc----CC---eeeEEC
Q 015386 109 YVTYRVISKD-----GFMHD-PVPIT-----MSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKE----NK---LIYAFD 170 (408)
Q Consensus 109 ~~~~~~~d~~-----g~~~~-~~~~~-----~p~~~~iHdfa~T~ny~V~~~~P~~~~~~~~l~~----g~---~~~~~~ 170 (408)
...++.++++ +.+.+ .+.++ ++.|+|||||+|||||+||+++|+++|+.+|+++ ++ ++++|+
T Consensus 203 ~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~ 282 (533)
T 3kvc_A 203 AYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESN 282 (533)
T ss_dssp EEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEEC
T ss_pred EEEEEEECccccccccccccceeEEeeccccCCCCceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeec
Confidence 3344444433 22222 22223 3579999999999999999999999999999875 33 379999
Q ss_pred CCCCcEEEEEeCcCCCCCceEEEEcCCeeEEecccccccCCCeEEEEEEeccC-CCC-c-----ccCCcc--cc--cccc
Q 015386 171 PTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRN-PDL-D-----MFNGPL--KE--TLED 239 (408)
Q Consensus 171 ~~~~t~~~vipR~~~~~~~v~~~~~~~~~~~H~~NAyE~~~~~ivvd~~~~~~-~~~-~-----~~~~~~--~~--~~~~ 239 (408)
|++++||+||||++++ ..++||++++||+||++||||++ |+||+|+|+|++ .++ . .+.... .+ ....
T Consensus 283 p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 360 (533)
T 3kvc_A 283 ETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINTYEDH-EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKA 360 (533)
T ss_dssp SSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEEEEET-TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTS
T ss_pred CCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeeeEEeC-CEEEEEEeeeCCchhhhhhhhhhhhcccchhcccccccc
Confidence 9999999999999853 23578999999999999999987 999999999997 442 1 111100 00 0113
Q ss_pred ccccEEEEEEeCCCC------------------------C--eeEEeeCC--C-CCCCCccCC-CCCCCCCcEEEEeccC
Q 015386 240 QTTELYEMRFNMKTG------------------------L--ASQKKLSP--A-CVDFPRINE-HYMGRKQRYVYGSILE 289 (408)
Q Consensus 240 ~~~~l~R~~idl~tg------------------------~--v~~~~l~~--~-~~EfP~in~-~~~gr~yry~Y~~~~~ 289 (408)
..++|+||+||++++ + ++++.|++ . ++|||+||+ +|.||+|||+|+++.+
T Consensus 361 ~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~ 440 (533)
T 3kvc_A 361 PQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN 440 (533)
T ss_dssp CEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE
T ss_pred CCceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC
Confidence 567899999999875 1 34567774 6 899999999 7999999999998865
Q ss_pred CCCCCCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCCC--CeeEEE
Q 015386 290 NIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT--GKSAVY 367 (408)
Q Consensus 290 ~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~~--~~s~L~ 367 (408)
. ..+++|+|+|++| |+. ..|.++++|+|||||||||++ ++|||||||++|+|..+ ++|+|+
T Consensus 441 ~-~~~~~l~K~D~~t----g~~----------~~w~~~~~~~~EPiFVPrp~~--~~EDDG~lLs~V~d~~~~~~~s~Ll 503 (533)
T 3kvc_A 441 H-FVPDRLCKLNVKT----KET----------WVWQEPDSYPSEPIFVSHPDA--LEEDDGVVLSVVVSPGAGQKPAYLL 503 (533)
T ss_dssp T-TEEEEEEEEETTT----CCE----------EEECCTTCBCCCCEEEECTTC--CSTTCEEEEEEEECCSTTSCSEEEE
T ss_pred C-CCCceeEEEEcCC----CCE----------EEEeCCCccccCceeecCCCC--CCCCCcEEEEEEEeCCcCCCccEEE
Confidence 3 5679999999996 552 346789999999999999875 89999999999999985 667999
Q ss_pred EEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 015386 368 VIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 399 (408)
Q Consensus 368 IlDA~~l~~gpVAri~Lp~~vP~gfHG~w~p~ 399 (408)
||||++|+ +|||++||++||+||||+|+++
T Consensus 504 ILDA~~l~--~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 504 ILNAKDLS--EVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp EEETTTCC--EEEEEEESSCCCCCCEEEEEEC
T ss_pred EEeCCCCh--hhEEEEeCCCCCCCccccccCC
Confidence 99999998 7999999999999999999874
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=39.78 E-value=3.1e+02 Score=27.73 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=59.1
Q ss_pred EEEEEeCCCCCeeEEeeCCCCCCCCccCCCCCCCCCcEEEEeccCCCCCCCeEEEEecccCCCcCceeeeecCceeeEEE
Q 015386 245 YEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFD 324 (408)
Q Consensus 245 ~R~~idl~tg~v~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~ 324 (408)
.-+.||+.++++..+.-.....+...+++ .-||+|.++. -+.|..+|+.+. +++. ...
T Consensus 178 ~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~-----dg~V~viD~~~~--t~~~----------v~~ 235 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGR-----DGKVNMIDLWMK--EPTT----------VAE 235 (567)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEET-----TSEEEEEETTSS--SCCE----------EEE
T ss_pred eEEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcC-----CCeEEEEECCCC--CCcE----------eEE
Confidence 34567888887665433322222333443 4568997653 257999999611 1221 111
Q ss_pred cCCCCcccceEEeeCCCCCCCC-CCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 015386 325 LGPGRFGSEAVFVPREPSSTSE-EDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 385 (408)
Q Consensus 325 ~~~~~~~~EPvFVPrp~~~~~~-EDDG~LL~~v~d~~~~~s~L~IlDA~~l~~gpVAri~Lp 385 (408)
...| .+|.-+.=.+ -. -|.-||++.-++. ..+.|+|+.+++ ++.++.+.
T Consensus 236 i~~G---~~P~~ia~s~---~~~pDGk~l~v~n~~~----~~v~ViD~~t~~--~~~~i~~~ 285 (567)
T 1qks_A 236 IKIG---SEARSIETSK---MEGWEDKYAIAGAYWP----PQYVIMDGETLE--PKKIQSTR 285 (567)
T ss_dssp EECC---SEEEEEEECC---STTCTTTEEEEEEEET----TEEEEEETTTCC--EEEEEECC
T ss_pred EecC---CCCceeEEcc---ccCCCCCEEEEEEccC----CeEEEEECCCCc--EEEEEecc
Confidence 2222 3444333310 00 1445888776653 467899999886 89988865
No 5
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=18.20 E-value=3e+02 Score=26.93 Aligned_cols=79 Identities=28% Similarity=0.258 Sum_probs=44.1
Q ss_pred cEEEEeccCCCCCCCeEEEEecccCCCcCceeeeecCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCcEEEEEEEeCC
Q 015386 281 RYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDEN 360 (408)
Q Consensus 281 ry~Y~~~~~~~~~~~~lvk~D~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LL~~v~d~~ 360 (408)
+++|.+........+.|..+|..+.+.. ..... |..+ .-.| .| |..+|.+.-....
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv------------~~I~v--G~~P-gia~--Sp-------Dgk~lyVan~~~~ 140 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRIL------------GMTDG--GFLP-HPVA--AE-------DGSFFAQASTVFE 140 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEE------------EEEEE--CSSC-EEEE--CT-------TSSCEEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEE------------EEEEC--CCCC-ceEE--CC-------CCCEEEEEecccc
Confidence 5688776432111178999999973221 12222 3333 3222 22 2234544432111
Q ss_pred -----CCeeEEEEEeCCCCCCCceEEEEcC
Q 015386 361 -----TGKSAVYVIDAKTMSADPVAVIELP 385 (408)
Q Consensus 361 -----~~~s~L~IlDA~~l~~gpVAri~Lp 385 (408)
.....+.|+|+++++ +++++.+|
T Consensus 141 ~~~~G~~~~~VsviD~~t~~--vv~~I~v~ 168 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFL--PIADIELP 168 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCC--EEEEEEET
T ss_pred ccccCCCCCEEEEEECCCCc--EEEEEECC
Confidence 123479999999886 89999997
No 6
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=15.60 E-value=48 Score=19.04 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=8.1
Q ss_pred CCCCCcEEEEe
Q 015386 276 MGRKQRYVYGS 286 (408)
Q Consensus 276 ~gr~yry~Y~~ 286 (408)
.|.+|||+|-.
T Consensus 11 tG~EYrYile~ 21 (26)
T 2xpn_B 11 TGEEYRYVLES 21 (26)
T ss_pred CCceEEEEeec
Confidence 57788988853
No 7
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=13.34 E-value=2.8e+02 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=29.0
Q ss_pred EEEECCEEEEE-EcCCcCEEEeccCCCCcccccceeccccc
Q 015386 42 LIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKRL 81 (408)
Q Consensus 42 V~~~~grLlAl-~E~g~P~~ldp~~~~tLeT~g~~d~~~~l 81 (408)
+-+.+|+|||- |+++.-+.+|| .|.+-++..++.+-.
T Consensus 177 Le~~~G~lyan~w~~~~I~vIDp---~tG~V~~~Id~~~L~ 214 (262)
T 3nol_A 177 LEWVDGEIFANVWQTNKIVRIDP---ETGKVTGIIDLNGIL 214 (262)
T ss_dssp EEEETTEEEEEETTSSEEEEECT---TTCBEEEEEECTTGG
T ss_pred eEEECCEEEEEEccCCeEEEEEC---CCCcEEEEEECCcCc
Confidence 44668999965 56887888988 599999999987643
No 8
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=12.44 E-value=3.8e+02 Score=27.69 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=20.1
Q ss_pred CCCeeEEEEEeCCCCCCCceEEEEcCC
Q 015386 360 NTGKSAVYVIDAKTMSADPVAVIELPH 386 (408)
Q Consensus 360 ~~~~s~L~IlDA~~l~~gpVAri~Lp~ 386 (408)
+..++.+-++|+.+++ .++++.++.
T Consensus 171 ~~~~~~vtvID~~t~~--v~~qI~Vgg 195 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWE--VAWQVLVSG 195 (595)
T ss_dssp GGEEEEEEEEETTTTE--EEEEEEESS
T ss_pred cccCceEEEEECCCCe--EEEEEEeCC
Confidence 3456789999999876 899999864
No 9
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=10.91 E-value=2.2e+02 Score=26.15 Aligned_cols=73 Identities=12% Similarity=0.220 Sum_probs=46.1
Q ss_pred eEEEEECCEEEEEE-cCCcCEEEeccCCCCcccccceecccccCCCCCCCceecCCCCcEEEEEecCCCCeEEEEEEcCC
Q 015386 40 TALIYHHGKLLVLS-EIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKD 118 (408)
Q Consensus 40 t~V~~~~grLlAl~-E~g~P~~ldp~~~~tLeT~g~~d~~~~l~~~~tAHP~~Dp~tGel~~fg~~~~~~~~~~~~~d~~ 118 (408)
..+...+++||.++ ..+.-+.+|+ .||+.++.+.+.+. .-.+| ++.+.+|.-. +.. .++++|++
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~---~t~~~~~ti~~~~e-G~glt------~dg~~L~~Sd---Gs~--~i~~iDp~ 154 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNI---RNLRQVRSFNYDGE-GWGLT------HNDQYLIMSD---GTP--VLRFLDPE 154 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEET---TTCCEEEEEECSSC-CCCEE------ECSSCEEECC---SSS--EEEEECTT
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEEC---ccCcEEEEEECCCC-ceEEe------cCCCEEEEEC---CCC--eEEEEcCC
Confidence 34667899999774 5777899998 59999999888541 11233 2234555332 222 36777765
Q ss_pred -CCeeeeEEE
Q 015386 119 -GFMHDPVPI 127 (408)
Q Consensus 119 -g~~~~~~~~ 127 (408)
.++.+.+.+
T Consensus 155 T~~v~~~I~V 164 (262)
T 3nol_A 155 SLTPVRTITV 164 (262)
T ss_dssp TCSEEEEEEC
T ss_pred CCeEEEEEEe
Confidence 567665544
No 10
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=10.45 E-value=2.3e+02 Score=25.63 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=44.8
Q ss_pred eEEEEECCEEEEE-EcCCcCEEEeccCCCCcccccceecccccCCCCCCCceecCCCCcEEEEEecCCCCeEEEEEEcCC
Q 015386 40 TALIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKD 118 (408)
Q Consensus 40 t~V~~~~grLlAl-~E~g~P~~ldp~~~~tLeT~g~~d~~~~l~~~~tAHP~~Dp~tGel~~fg~~~~~~~~~~~~~d~~ 118 (408)
..+..++++||.+ |..+.-+.+|+ .||+.++.+.+.+. .-.+| ++.+++|.- - ++. .++++|++
T Consensus 68 eGi~~~~~~ly~ltw~~~~v~v~D~---~tl~~~~ti~~~~~-Gwglt------~dg~~L~vS-d--gs~--~l~~iDp~ 132 (243)
T 3mbr_X 68 AGIVAWRDRLIQLTWRNHEGFVYDL---ATLTPRARFRYPGE-GWALT------SDDSHLYMS-D--GTA--VIRKLDPD 132 (243)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEET---TTTEEEEEEECSSC-CCEEE------ECSSCEEEE-C--SSS--EEEEECTT
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEEC---CcCcEEEEEeCCCC-ceEEe------eCCCEEEEE-C--CCC--eEEEEeCC
Confidence 3456789999977 56777899998 59999999887542 11122 233455432 2 223 36677764
Q ss_pred -CCeeeeEEE
Q 015386 119 -GFMHDPVPI 127 (408)
Q Consensus 119 -g~~~~~~~~ 127 (408)
.++.+++.+
T Consensus 133 t~~~~~~I~V 142 (243)
T 3mbr_X 133 TLQQVGSIKV 142 (243)
T ss_dssp TCCEEEEEEC
T ss_pred CCeEEEEEEE
Confidence 456555443
Done!