BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015387
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 149/243 (61%), Gaps = 6/243 (2%)
Query: 152 EYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTI 211
EYV DIYAY R++E + V P Y+ + ++ MRAILIDWL++V KF L+ ET+++T+
Sbjct: 5 EYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 63
Query: 212 NIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEK 271
+I+D+F++ V +K LQLVGVTAM +A KYEE+ P + DF ++DN YT+ ++ ME
Sbjct: 64 SIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 123
Query: 272 LLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAA 331
+L L F + P P F+RR K + D + LA +++EL +++Y M+ FPPS +AA
Sbjct: 124 KILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 183
Query: 332 AIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLM---VTLHEKAATGKLTGVYRKFN 388
A ++ + +WT T + +Y E+ LL + + V + + T +T V K+
Sbjct: 184 A-FSLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMT-VKNKYA 241
Query: 389 TSK 391
TSK
Sbjct: 242 TSK 244
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 6/243 (2%)
Query: 152 EYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTI 211
EYV DIYAY R++E V P Y+ + ++ MRAILIDWL++V KF L+ ET+++T+
Sbjct: 3 EYVKDIYAYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 61
Query: 212 NIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEK 271
+I+D+F++ V +K LQLVGVTAM +A KYEE+ P + DF ++DN YT+ ++ ME
Sbjct: 62 SIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 121
Query: 272 LLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAA 331
+L L F + P P F+RR K + D + LA +++EL +++Y M+ FPPS +AA
Sbjct: 122 KILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 181
Query: 332 AIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLM---VTLHEKAATGKLTGVYRKFN 388
A A + +WT T + +Y E+ LL + + V + + T +T V K+
Sbjct: 182 AFCLA-LKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMT-VKNKYA 239
Query: 389 TSK 391
TSK
Sbjct: 240 TSK 242
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 4 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ Y++K+VL M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 123
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PSL
Sbjct: 124 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 183
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C +V LH+ KA
Sbjct: 184 IAGAAFHLA---LYTVTGQSWPESLAQQTGYTLESLKPC---LVDLHQTYLKAPQHAQQS 237
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 238 IREKYKHSKYHSVSLLNP 255
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ Y++K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PSL
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C +V LH+ KA
Sbjct: 181 IAGAAFHLA---LYTVTGQSWPESLAQQTGYTLESLKPC---LVDLHQTYLKAPQHAQQS 234
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 235 IREKYKHSKYHSVSLLNP 252
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ Y++K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PSL
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C +V LH+ KA
Sbjct: 181 IAGAAFHLA---LYTVTGQSWPESLAQQTGYTLESLKPC---LVDLHQTYLKAPQHAQQS 234
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 235 IREKYKHSKYHSVSLLNP 252
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ +A
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ +A
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ +A
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 8 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 67
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 68 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 127
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 128 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 187
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 188 IAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 241
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 242 IREKYKNSKYHGVSLLNP 259
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ +A
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ +A
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L C ++ LH+ +A
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 155/266 (58%), Gaps = 15/266 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 181 IAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 234
Query: 383 VYRKFNTSKFGHAAKAEP--ALFLLN 406
+ K+ SK+ + P L LLN
Sbjct: 235 IREKYKNSKYHGVSLLNPPETLNLLN 260
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 152/260 (58%), Gaps = 13/260 (5%)
Query: 148 LAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETL 207
+ V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL
Sbjct: 1 MEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 60
Query: 208 FLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVL 267
L +N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL
Sbjct: 61 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 120
Query: 268 DMEKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPP 325
ME L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ P
Sbjct: 121 RMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP 180
Query: 326 SLLAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKL 380
S++A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 181 SVIAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQ 234
Query: 381 TGVYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 235 QSIREKYKNSKYHGVSLLNP 254
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 153/259 (59%), Gaps = 15/259 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSR-LMVTLHE---KAATGKLT 381
+AAAA + A LY + + W ++ T Y LE S+ M+ LH+ KA
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLIRKTGY----TLETSKPCMLDLHQTYLKAPQHAQQ 237
Query: 382 GVYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 238 SIREKYKNSKYHGVSLLNP 256
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 183 IAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 236
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 237 IREKYKNSKYHGVSLLNP 254
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 4 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 123
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 124 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 183
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 184 IAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 237
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 238 IREKYKNSKYHGVSLLNP 255
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 2 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 61
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 62 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 121
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 122 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 181
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 182 IAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 235
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 236 IREKYKNSKYHGVSLLNP 253
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+A AA + A LY + + W ++ T Y + L C ++ LH+ KA
Sbjct: 181 IAGAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQS 234
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 235 IREKYKNSKYHGVSLLNP 252
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 150/256 (58%), Gaps = 13/256 (5%)
Query: 152 EYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTI 211
+Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L +
Sbjct: 1 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 212 NIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEK 271
N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL ME
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 120
Query: 272 LLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSLLA 329
L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS++A
Sbjct: 121 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 180
Query: 330 AAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTGVY 384
AA + A LY + + W ++ T Y + L C ++ LH+ KA +
Sbjct: 181 GAAFHLA---LYTVTGQSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 234
Query: 385 RKFNTSKFGHAAKAEP 400
K+ SK+ + P
Sbjct: 235 EKYKNSKYHGVSLLNP 250
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 13/258 (5%)
Query: 150 VVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFL 209
V +Y +DI+ Y R++E+ YM Q DI MRAIL+DWL+EV +++L +ETL L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 210 TINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269
+N +D+FL V+R KLQLVG AMLLA K+EE+ P V +F+ I+D+ YT+K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 270 EKLLLNTLQFNMSVPTPYVFMRR-FLKAAQSDKKLELLAFFIVELCLVEY-KMLKFPPSL 327
E L+L L F+++ PT F+ + FL ++ K+E LA F+ EL L++ LK+ PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 328 LAAAAIYTAQCSLYQL--KQWTKTSEWLTNYPEDQLLECSRLMVTLHE---KAATGKLTG 382
+AAAA + A LY + + W ++ T Y + L +++ LH+ KA
Sbjct: 185 IAAAAFHLA---LYTVTGQSWPESLIRKTGYTLESL---KPMLLDLHQTYLKAPQHAQQS 238
Query: 383 VYRKFNTSKFGHAAKAEP 400
+ K+ SK+ + P
Sbjct: 239 IREKYKNSKYHGVSLLNP 256
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 107/191 (56%), Gaps = 14/191 (7%)
Query: 174 YMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQV-VVRKKLQLVG 232
+++ + KMRAIL+DWL+EV ++L ET +L + D+++ Q VV+ LQL+G
Sbjct: 38 FLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIG 97
Query: 233 VTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRR 292
++++ +A K EE+ P + F ++D A + E+L ME +++ L++ +S T ++
Sbjct: 98 ISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNV 157
Query: 293 FLKAAQSDKKLELL------AFFI-----VELCLVEYKMLKFPPSLLAAAAIYTAQCSLY 341
+++ A + E+L FI ++LC+++ L+FP +LAA+A+Y S
Sbjct: 158 YMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSS-- 215
Query: 342 QLKQWTKTSEW 352
+L Q +W
Sbjct: 216 ELMQKVSGYQW 226
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 134 DPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWL 193
DP L D R L++ L + E +Y++ CV Q +I MR +L W+
Sbjct: 32 DPRLLGDQRVLQSLLRLEERYVPRASYFQ------CV-------QREIKPHMRKMLAYWM 78
Query: 194 LEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDF 253
LEV + +E L +N +D++L + +LQL+G MLLA K E + ++
Sbjct: 79 LEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKL 138
Query: 254 ILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELL----AFF 309
+ +D+A + +++ D E L+L L+++++ + F+ L + + L A
Sbjct: 139 CIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQT 198
Query: 310 IVELCLVEYKMLKFPPSLLAAAAIYTA 336
+ LC +Y +PPS++A +I A
Sbjct: 199 FLALCATDYTFAMYPPSMIATGSIGAA 225
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
Query: 178 QSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAML 237
Q ++ MR I+ W+LEV + + +E L +N +D+FL + V + +LQL+G T M
Sbjct: 49 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 108
Query: 238 LACKYEEVSVPIVDDFILI-SDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFL-- 294
+A K +E ++P+ + + I +DN+ +E+L ME LL+N L++N++ TP+ F+ FL
Sbjct: 109 VASKMKE-TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167
Query: 295 --KAAQSDKKLELLAFFIVELCLVEYKMLKFPPSL 327
+A ++ + + A V LC + K + PPS+
Sbjct: 168 MPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
Query: 178 QSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAML 237
Q ++ MR I+ W+LEV + + +E L +N +D+FL + V + +LQL+G T M
Sbjct: 35 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 94
Query: 238 LACKYEEVSVPIVDDFILI-SDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFL-- 294
+A K +E ++P+ + + I +DN+ +E+L ME LL+N L++N++ TP+ F+ FL
Sbjct: 95 VASKMKE-TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 153
Query: 295 --KAAQSDKKLELLAFFIVELCLVEYKMLKFPPSL 327
+A ++ + + A V LC + K + PPS+
Sbjct: 154 MPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 188
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 18/148 (12%)
Query: 230 LVGVTAMLLACKYEEVSVPIVDDF----ILISDNAY------TRKEVLDMEKLLLNTLQF 279
+ G + LA K EE D L++D + ++EV+ +E++LL T++F
Sbjct: 85 VTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKF 144
Query: 280 NMSVPTPYVFMRRFLKAAQSDK----KLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYT 335
++ V PY F+ ++ K + DK KL +A+ V L L++ P ++A A +Y
Sbjct: 145 DLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYL 204
Query: 336 A-QCSLYQLKQWTKTS---EWLTNYPED 359
A + +++++WT W + +D
Sbjct: 205 AGRLCKFEIQEWTSKPMYRRWWEQFVQD 232
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%)
Query: 178 QSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAML 237
Q+++ R IL+ W+ + FEL L+++I+D++L ++ +K LQ +G +L
Sbjct: 44 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 103
Query: 238 LACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFN 280
+ K V V +S + +T E+++ EK +L L+++
Sbjct: 104 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 146
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%)
Query: 178 QSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAML 237
Q+++ R IL+ W+ + FEL L+++I+D++L ++ +K LQ +G +L
Sbjct: 23 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 82
Query: 238 LACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFN 280
+ K V V +S + +T E+++ EK +L L+++
Sbjct: 83 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 125
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%)
Query: 178 QSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAML 237
Q + MR +L W+ V ++ L + L +N++D+ L + V ++ Q G +L
Sbjct: 43 QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLL 102
Query: 238 LACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQF 279
+A K ++ + ++++R+E++D EK LL L +
Sbjct: 103 VASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAW 144
>pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 193 LLEVHYKFELMDETLFLTINIVDKF--LERQVVVRKKLQ-----LVGVTAMLLACKYEEV 245
++ + M + + L NIVD+ L +QV +K L+ + + +AC+ E V
Sbjct: 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV 64
Query: 246 SVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLEL 305
+ + + + ++KE+ KL+L L+ ++ + T FM RF K++++
Sbjct: 65 PRTFKE---ICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQM 121
Query: 306 LAFFI----VELCLVEYKMLKFPPSLLAAAAIYTA 336
A I VEL LV + P +AAAAIY A
Sbjct: 122 AATHIARKAVELDLVPGR----SPISVAAAAIYMA 152
>pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 193 LLEVHYKFELMDETLFLTINIVDKF--LERQVVVRKKLQ-----LVGVTAMLLACKYEEV 245
++ + M + + L NIVD+ L +QV +K L+ + + +AC+ E V
Sbjct: 4 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV 63
Query: 246 SVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLEL 305
+ + + + ++KE+ KL+L L+ ++ + T FM RF K++++
Sbjct: 64 PRTFKE---ICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQM 120
Query: 306 LAFFI----VELCLVEYKMLKFPPSLLAAAAIYTA 336
A I VEL LV + P +AAAAIY A
Sbjct: 121 AATHIARKAVELDLVPGR----SPISVAAAAIYMA 151
>pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 193 LLEVHYKFELMDETLFLTINIVDKF--LERQVVVRKKLQ-----LVGVTAMLLACKYEEV 245
++ + M + + L NIVD+ L +QV +K L+ + + +AC+ E V
Sbjct: 6 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV 65
Query: 246 SVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLEL 305
+ + + + ++KE+ KL+L L+ ++ + T FM RF K++++
Sbjct: 66 PRTFKE---ICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQM 122
Query: 306 LAFFI----VELCLVEYKMLKFPPSLLAAAAIYTA 336
A I VEL LV + P +AAAAIY A
Sbjct: 123 AATHIARKAVELDLVPGR----SPISVAAAAIYMA 153
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 204 DETLFLTINIVDKFLERQVVVRKKLQLV-GVTAMLLACKYEEVSVPIVDDFILISDNAYT 262
+ETL L + KFL+++V+V K + L+ + L + V +P FI +AY
Sbjct: 183 EETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFI----DAYK 238
Query: 263 RKEVLDMEKLLLNTLQFNM 281
R+ ++ L L L FNM
Sbjct: 239 RRPDMNPTVLELAKLDFNM 257
>pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 193 LLEVHYKFELMDETLFLTINIVDKF--LERQVVVRKKLQ-----LVGVTAMLLACKYEEV 245
++ + M + + L N VD+ L RQ +K L+ + + +AC+ E V
Sbjct: 2 MMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGV 61
Query: 246 SVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLEL 305
+ + + + ++KE+ KL+L L+ ++ + T FM RF K++++
Sbjct: 62 PRTFKE---ICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQM 118
Query: 306 LAFFI----VELCLVEYKMLKFPPSLLAAAAIYTA 336
A I VEL LV + P +AAAAIY A
Sbjct: 119 AATHIARKAVELDLVPGR----SPISVAAAAIYMA 149
>pdb|2ON7|A Chain A, Structure Of Nagst-1
pdb|2ON7|B Chain B, Structure Of Nagst-1
pdb|2ON7|C Chain C, Structure Of Nagst-1
pdb|2ON7|D Chain D, Structure Of Nagst-1
Length = 206
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 128 ELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRA 187
+L + P+L++DG+ L LA+ Y+ + + K V + D SD ++++
Sbjct: 45 DLPFGQVPVLEVDGKQLAQSLAICRYLARQFGFAGKSTFDEAVVDSLADQYSDYRVEIKS 104
Query: 188 IL 189
Sbjct: 105 FF 106
>pdb|2ON5|A Chain A, Structure Of Nagst-2
pdb|2ON5|B Chain B, Structure Of Nagst-2
pdb|2ON5|C Chain C, Structure Of Nagst-2
pdb|2ON5|D Chain D, Structure Of Nagst-2
pdb|2ON5|E Chain E, Structure Of Nagst-2
pdb|2ON5|F Chain F, Structure Of Nagst-2
pdb|2ON5|G Chain G, Structure Of Nagst-2
pdb|2ON5|H Chain H, Structure Of Nagst-2
Length = 206
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 127 DELEVTEDPILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSC----VSPTYMDHQSDIN 182
DE+ + P+L+ DG+ L A+ Y+ + + K V+ Y D+ ++I
Sbjct: 44 DEMPFGQIPVLEEDGKQLAQSFAIARYLSRKFGFAGKTPFEEALVDSVADQYKDYINEIR 103
Query: 183 EKMRAI 188
+R +
Sbjct: 104 PYLRVV 109
>pdb|2WS2|A Chain A, The 2 Angstrom Structure Of A Nu-Class Gst From Haemonchus
Contortus
pdb|2WS2|B Chain B, The 2 Angstrom Structure Of A Nu-Class Gst From Haemonchus
Contortus
Length = 204
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 135 PILDIDGRDLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMR 186
P+L++DG+ L +A+V Y+ + Y K V + D D ++R
Sbjct: 52 PVLEVDGKQLPQSVAIVRYLARKFGYAGKSAWEEAVVDSIADQFKDFLNEVR 103
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 207 LFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYT---- 262
+FL + + + + ++K + + + + ++A KY+++ +V+DF+++ +NA T
Sbjct: 41 IFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDS-MVEDFVMMFNNACTYNEP 99
Query: 263 ----RKEVLDMEKLLLNT 276
K+ L + K+LL T
Sbjct: 100 ESLIYKDALVLHKVLLET 117
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 207 LFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYT---- 262
+FL + + + + ++K + + + + ++A KY+++ +V+DF+++ +NA T
Sbjct: 41 IFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMFNNACTYNEP 99
Query: 263 ----RKEVLDMEKLLLNT 276
K+ L + K+LL T
Sbjct: 100 ESLIYKDALVLHKVLLET 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,891,172
Number of Sequences: 62578
Number of extensions: 491044
Number of successful extensions: 1392
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 52
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)