Query 015387
Match_columns 408
No_of_seqs 295 out of 1872
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 2.7E-56 9.1E-61 429.7 25.6 255 149-404 2-258 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 2.6E-55 8.7E-60 425.0 20.8 255 148-404 1-257 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 7.2E-49 2.5E-53 377.2 22.6 236 143-381 10-255 (257)
4 1w98_B Cyclin E, G1/S-specific 100.0 2.8E-48 9.4E-53 378.5 26.2 254 144-406 8-276 (283)
5 2f2c_A Cyclin homolog, V-cycli 100.0 3.8E-48 1.3E-52 371.6 25.3 230 143-375 11-249 (254)
6 3g33_B CCND3 protein; Ser/Thr 100.0 1.1E-46 3.6E-51 371.1 24.8 229 145-375 31-268 (306)
7 1f5q_B Gamma herpesvirus cycli 100.0 7E-46 2.4E-50 355.9 20.3 222 143-374 13-242 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 3.4E-45 1.2E-49 354.3 23.3 231 143-376 16-259 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 1.2E-36 3.9E-41 291.9 19.0 206 180-389 25-254 (257)
10 3rgf_B Cyclin-C; protein kinas 100.0 3.2E-36 1.1E-40 293.6 18.5 206 182-391 39-263 (285)
11 2i53_A Cyclin K; cell cycle, t 100.0 9.7E-36 3.3E-40 285.3 18.7 197 178-375 33-252 (258)
12 1zp2_A RNA polymerase II holoe 100.0 1.8E-34 6.2E-39 273.4 18.3 186 186-375 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 8.9E-35 3E-39 291.9 12.2 202 180-385 32-257 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 2.2E-32 7.6E-37 271.0 19.4 204 183-387 54-277 (323)
15 1c9b_A General transcription f 100.0 3.1E-28 1.1E-32 226.1 21.0 185 185-373 4-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 1.9E-24 6.5E-29 199.4 21.8 184 185-372 8-193 (200)
17 3k7a_M Transcription initiatio 99.8 2.9E-21 9.9E-26 192.8 7.4 183 186-372 126-320 (345)
18 4bbr_M Transcription initiatio 99.6 9.2E-16 3.1E-20 153.0 9.0 183 187-373 127-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 4.5E-06 1.5E-10 80.6 11.4 105 189-296 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 97.3 0.00087 3E-08 60.7 9.4 90 190-282 109-198 (200)
21 1c9b_A General transcription f 96.3 0.027 9.4E-07 51.0 10.8 86 286-372 8-93 (207)
22 4bbr_M Transcription initiatio 94.0 0.22 7.5E-06 49.1 9.9 88 285-373 128-215 (345)
23 1zp2_A RNA polymerase II holoe 93.6 0.47 1.6E-05 43.7 10.8 87 286-373 31-126 (235)
24 2b9r_A Human cyclin B1; cell c 92.1 1.1 3.7E-05 42.2 11.2 87 287-373 42-130 (269)
25 3k7a_M Transcription initiatio 91.9 0.12 4.1E-06 50.9 4.4 87 286-373 129-215 (345)
26 2w96_A G1/S-specific cyclin-D1 90.6 1.6 5.5E-05 40.9 10.7 86 288-373 62-149 (271)
27 2ivx_A Cyclin-T2; transcriptio 90.6 1.1 3.8E-05 41.6 9.5 88 190-277 147-238 (257)
28 2cch_B Cyclin A2, cyclin-A; co 90.5 1.2 4.2E-05 41.5 9.8 86 288-373 44-131 (260)
29 1g3n_C V-cyclin; cyclin-depend 90.3 1.5 5.1E-05 40.9 10.1 86 287-372 55-142 (257)
30 2f2c_A Cyclin homolog, V-cycli 90.0 1.6 5.6E-05 40.5 10.1 86 288-373 57-144 (254)
31 3rgf_B Cyclin-C; protein kinas 89.8 2.1 7.3E-05 40.5 10.9 86 287-372 47-148 (285)
32 2i53_A Cyclin K; cell cycle, t 88.4 1.4 4.7E-05 40.9 8.3 89 190-278 152-250 (258)
33 1w98_B Cyclin E, G1/S-specific 88.3 3.2 0.00011 39.3 10.9 85 288-372 55-142 (283)
34 3g33_B CCND3 protein; Ser/Thr 87.9 2.4 8.2E-05 40.7 9.9 86 288-373 76-163 (306)
35 2pk2_A Cyclin-T1, protein TAT; 87.2 1.1 3.9E-05 44.1 7.2 87 191-277 155-245 (358)
36 3h4c_A Transcription factor TF 86.4 19 0.00065 32.8 14.9 154 188-347 14-176 (260)
37 1jkw_A Cyclin H; cell cycle, c 85.4 6.2 0.00021 38.1 11.4 84 288-372 62-154 (323)
38 2pmi_B PHO85 cyclin PHO80, ami 85.1 4.9 0.00017 38.6 10.2 89 285-373 76-167 (293)
39 1f5q_B Gamma herpesvirus cycli 76.2 14 0.00048 34.3 9.9 85 288-372 54-140 (252)
40 3m03_A ORC6, origin recognitio 66.2 27 0.00092 27.7 7.9 79 193-276 6-90 (95)
41 3v7d_A Suppressor of kinetocho 44.5 25 0.00086 30.5 4.8 56 200-267 99-157 (169)
42 2ast_A S-phase kinase-associat 43.1 33 0.0011 29.3 5.3 54 201-266 93-149 (159)
43 2qdj_A Retinoblastoma-associat 42.5 41 0.0014 32.3 6.3 71 193-266 6-80 (304)
44 2p1m_A SKP1-like protein 1A; F 42.3 29 0.001 29.7 4.8 54 201-266 92-148 (160)
45 1fs1_B SKP1, cyclin A/CDK2-ass 28.3 68 0.0023 26.7 4.8 46 200-256 87-135 (141)
46 3m03_A ORC6, origin recognitio 27.9 1.6E+02 0.0056 23.1 6.6 52 322-374 42-93 (95)
47 3o0g_D Cyclin-dependent kinase 23.7 1.1E+02 0.0037 25.8 4.9 88 187-279 28-126 (149)
48 2wh0_Q Pkcev3, protein kinase 20.1 73 0.0025 19.3 2.3 18 263-280 12-29 (31)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.7e-56 Score=429.69 Aligned_cols=255 Identities=37% Similarity=0.608 Sum_probs=245.6
Q ss_pred chhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccch
Q 015387 149 AVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKL 228 (408)
Q Consensus 149 ~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~l 228 (408)
.|+||++|||+||++.|.++.++++||..|++|++.||.+++|||++++..|+++++|+++|++|+|||+++..+.+.++
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 81 (260)
T 2cch_B 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL 81 (260)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred chHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH-HHHHHH
Q 015387 229 QLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK-KLELLA 307 (408)
Q Consensus 229 qLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~-~~~~la 307 (408)
|++|+||||||||+||..+|++++++.++++.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+. ++..+|
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a 161 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLA 161 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654 899999
Q ss_pred HHHHHHHhcccc-ccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCCchhhhcc
Q 015387 308 FFIVELCLVEYK-MLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRK 386 (408)
Q Consensus 308 ~~llelsl~d~~-~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~~~~~~~~~i~~K 386 (408)
++++++++.++. +++|+||.||||||++|+..++. +.|...+..++||++++|.+|++.|.+++.++...++++|++|
T Consensus 162 ~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~K 240 (260)
T 2cch_B 162 MFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREK 240 (260)
T ss_dssp HHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHH
T ss_pred HHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 999999999999 99999999999999999988765 7899999999999999999999999999988888889999999
Q ss_pred cCCccccccccCCcchhh
Q 015387 387 FNTSKFGHAAKAEPALFL 404 (408)
Q Consensus 387 Yss~~f~~vs~~~p~~~l 404 (408)
|++++|+.||+++|++.|
T Consensus 241 y~~~~~~~vs~~~~~~~~ 258 (260)
T 2cch_B 241 YKNSKYHGVSLLNPPETL 258 (260)
T ss_dssp HTSGGGTTGGGSCCCSCC
T ss_pred HCcccccceeCCCCcccC
Confidence 999999999999999876
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.6e-55 Score=425.05 Aligned_cols=255 Identities=37% Similarity=0.625 Sum_probs=238.8
Q ss_pred cchhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccc
Q 015387 148 LAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKK 227 (408)
Q Consensus 148 ~~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~ 227 (408)
++|+||++|||+||+..|.++.++++||.+| ++++.||.++++||++++.+|+++++|+++|++|+|||+++..+.+.+
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5789999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcHHHHHHH
Q 015387 228 LQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLA 307 (408)
Q Consensus 228 lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~la 307 (408)
+|++|+||||||||+||..+|++++++.++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.++..+|
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a 159 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLA 159 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHHhhcCC--CCchhhhc
Q 015387 308 FFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAAT--GKLTGVYR 385 (408)
Q Consensus 308 ~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~~~~--~~~~~i~~ 385 (408)
++++++++.++.|++|+||.||||||++|+..++. ..|...+..++||++++|.+|++.|.+++.+... .++++|++
T Consensus 160 ~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~-~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~ 238 (269)
T 2b9r_A 160 KYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN-GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKN 238 (269)
T ss_dssp HHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC-CCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHH
T ss_pred HHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 99999999999999999999999999999987754 5899999999999999999999999999876544 48899999
Q ss_pred ccCCccccccccCCcchhh
Q 015387 386 KFNTSKFGHAAKAEPALFL 404 (408)
Q Consensus 386 KYss~~f~~vs~~~p~~~l 404 (408)
||++++|++||+++|++-.
T Consensus 239 Ky~~~~~~~vs~~~~~~~~ 257 (269)
T 2b9r_A 239 KYATSKHAKISTLPQLNSA 257 (269)
T ss_dssp HTTSGGGTTGGGSSCCSGG
T ss_pred HhcchhhCcccCCCCCChH
Confidence 9999999999999987654
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.2e-49 Score=377.25 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=213.5
Q ss_pred CCCCccchhhhHHHHHHHHHHhHhhcCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcc
Q 015387 143 DLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMD-HQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQ 221 (408)
Q Consensus 143 d~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~-~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~ 221 (408)
+..||+++.+ +||| +|++.|.++.++++|+. .|+++++.||.+++|||++++.+|+++++|+++||+|+|||+++.
T Consensus 10 ~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~ 86 (257)
T 1g3n_C 10 GLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK 86 (257)
T ss_dssp ------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC
Confidence 4679999998 9999 99999999999999985 799999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH
Q 015387 222 VVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK 301 (408)
Q Consensus 222 ~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~ 301 (408)
.+.+.++|++|+||||||||+||..+|++++++.++++.|++++|++||+.||++|+|+++.|||++|+++|++.++.+.
T Consensus 87 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~ 166 (257)
T 1g3n_C 87 QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGS 166 (257)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987553
Q ss_pred H----HHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccC-----CCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 015387 302 K----LELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQL-----KQWTKTSEWLTNYPEDQLLECSRLMVTLH 372 (408)
Q Consensus 302 ~----~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~-----~~w~~~l~~~tgys~~~L~~c~~~L~~l~ 372 (408)
+ +..+|++++++++.++.|++|+||.||||||++|++.++.. +.|...+..++||++++|.+|++.|.+++
T Consensus 167 ~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 167 QHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp TTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 2 46789999999999999999999999999999998877632 57999999999999999999999999998
Q ss_pred hhcCCCCch
Q 015387 373 EKAATGKLT 381 (408)
Q Consensus 373 ~~~~~~~~~ 381 (408)
.+.....+.
T Consensus 247 ~~~~~~~l~ 255 (257)
T 1g3n_C 247 SDFDLRILD 255 (257)
T ss_dssp HHCCCCC--
T ss_pred HHCCHHhhc
Confidence 776555443
No 4
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.8e-48 Score=378.47 Aligned_cols=254 Identities=24% Similarity=0.457 Sum_probs=232.0
Q ss_pred CCCccchhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhc-cc
Q 015387 144 LKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLER-QV 222 (408)
Q Consensus 144 ~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~-~~ 222 (408)
..+|.++.+|.+|||++|+..|.++.++++||..|++|++.||.++++||++++.+|++.++|+++|++|+|||+++ ..
T Consensus 8 ~~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~ 87 (283)
T 1w98_B 8 SPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN 87 (283)
T ss_dssp CCSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999998 68
Q ss_pred ccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH-
Q 015387 223 VVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK- 301 (408)
Q Consensus 223 v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~- 301 (408)
+.+.++|++|+||||||||+||..+|++++++.++++.|++++|.+||+.||++|+|++++|||++||.+|++.++.+.
T Consensus 88 v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 88 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999865321
Q ss_pred ----------HHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHH
Q 015387 302 ----------KLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTL 371 (408)
Q Consensus 302 ----------~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l 371 (408)
.....+.+++++++.|+.|++|+||.||||||++|+ |...+..++||++++|.+|++.|..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 168 HEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPF 239 (283)
T ss_dssp CCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 233457789999999999999999999999999984 57788899999999999999999987
Q ss_pred Hh---hcCCCCchhhhcccCCccccccccCCcchhhcc
Q 015387 372 HE---KAATGKLTGVYRKFNTSKFGHAAKAEPALFLLN 406 (408)
Q Consensus 372 ~~---~~~~~~~~~i~~KYss~~f~~vs~~~p~~~l~~ 406 (408)
+. +....+++. ++||+++.|+.|+...|.--|++
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~l~ 276 (283)
T 1w98_B 240 AMVIRETGSSKLKH-FRGVADEDAHNIQTHRDSLDLLD 276 (283)
T ss_dssp HHHHHHHCCCCCCC-CTTSCGGGGGGBCCCCCHHHHHT
T ss_pred HHHHHhcChHhhcc-hhccCHHhccCcccCcchHHHHH
Confidence 75 345566665 67999999999999888776665
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3.8e-48 Score=371.60 Aligned_cols=230 Identities=17% Similarity=0.244 Sum_probs=211.7
Q ss_pred CCCCccchhhhHHHHHHHHHHhHhhcCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcc
Q 015387 143 DLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMD-HQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQ 221 (408)
Q Consensus 143 d~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~-~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~ 221 (408)
+..||+++.+ +|||+ |++.|.++.++++||. .|+++++.||.+++|||++++.+|+++++|+++||+|+|||+++.
T Consensus 11 ~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~ 87 (254)
T 2f2c_A 11 AKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKK 87 (254)
T ss_dssp CCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTS
T ss_pred CCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccC
Confidence 5679999999 99999 9999999999999996 799999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH
Q 015387 222 VVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK 301 (408)
Q Consensus 222 ~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~ 301 (408)
.+.+.++||+|+||||||||+||..+|++++++.++++.|++++|++||+.||++|+|+++.|||++|+++|++.++.+.
T Consensus 88 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~ 167 (254)
T 2f2c_A 88 QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPE 167 (254)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCG
T ss_pred CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred H----HHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCC-c---hhhhhhhcCCCHHHHHHHHHHHHHHHh
Q 015387 302 K----LELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQ-W---TKTSEWLTNYPEDQLLECSRLMVTLHE 373 (408)
Q Consensus 302 ~----~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~-w---~~~l~~~tgys~~~L~~c~~~L~~l~~ 373 (408)
+ ++..|++++++++.++.|++|+||.|||||+++|+....+.+. | ...+..++||++++|.+|++.|.+++.
T Consensus 168 ~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 168 DLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247 (254)
T ss_dssp GGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3 4678999999999999999999999999999999987533333 5 788999999999999999999999875
Q ss_pred hc
Q 015387 374 KA 375 (408)
Q Consensus 374 ~~ 375 (408)
+.
T Consensus 248 ~~ 249 (254)
T 2f2c_A 248 LY 249 (254)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=371.14 Aligned_cols=229 Identities=23% Similarity=0.349 Sum_probs=208.1
Q ss_pred CCccchhhhHHHHHHHHHHhHhhcCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccc
Q 015387 145 KNPLAVVEYVDDIYAYYRKIEISSCVSPTYMD-HQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVV 223 (408)
Q Consensus 145 ~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~-~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v 223 (408)
.||.++ |.+|||++|+..|.++.++++|+. .|++|++.||.++++||++++..|+|+++|+++||+||||||++..+
T Consensus 31 ~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v 108 (306)
T 3g33_B 31 PDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPT 108 (306)
T ss_dssp --------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCC
T ss_pred CCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCC
Confidence 467666 889999999999999999999998 69999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH--
Q 015387 224 VRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK-- 301 (408)
Q Consensus 224 ~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~-- 301 (408)
.+.++||+|+||||||||+||..+|++++|+.++++.|++++|++||+.||++|+|++++|||++||.+|++.++...
T Consensus 109 ~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~ 188 (306)
T 3g33_B 109 RKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188 (306)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTT
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --HHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCc----hhhhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 015387 302 --KLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQW----TKTSEWLTNYPEDQLLECSRLMVTLHEKA 375 (408)
Q Consensus 302 --~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w----~~~l~~~tgys~~~L~~c~~~L~~l~~~~ 375 (408)
.+...|++++++++.++.|+.|+||.||||||++|++.++....| ...+..++||++++|.+|++.|.+++.+.
T Consensus 189 ~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 189 QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRES 268 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999999999999999888765555 57788899999999999999999998753
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7e-46 Score=355.90 Aligned_cols=222 Identities=15% Similarity=0.159 Sum_probs=202.0
Q ss_pred CCCCccchhhhHHHHHHHHHHhHhhcCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhccc
Q 015387 143 DLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMDHQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQV 222 (408)
Q Consensus 143 d~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~ 222 (408)
...||+++.+ +||.+|++.|.++.+ +..|+++++.||.++||||++|+..|++.++|+++||+|+||||++..
T Consensus 13 ~~~dp~l~~d---~i~~~l~~~E~~~~p----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~ 85 (252)
T 1f5q_B 13 SLLNEEDCRQ---MIYRSEREHDARMVG----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR 85 (252)
T ss_dssp TTCCHHHHHH---HHHHHHHHHHHHHSS----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHhHH---HHHHHHHHHHHHhCc----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC
Confidence 4568999865 999999999999865 566889999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH-
Q 015387 223 VVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK- 301 (408)
Q Consensus 223 v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~- 301 (408)
+.+.++||+|+||||||||+||..+|.+++++.++++.|++++|++||+.||++|+|+++.|||++|+++|++.++.+.
T Consensus 86 v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 86 IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCc----hhhhhhhcCCCHHHHHHHHHHHHHHHhh
Q 015387 302 ---KLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQW----TKTSEWLTNYPEDQLLECSRLMVTLHEK 374 (408)
Q Consensus 302 ---~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w----~~~l~~~tgys~~~L~~c~~~L~~l~~~ 374 (408)
.+...|++++++++.|+.|+.|+||.|||||+.++ ++....| ...+..++||+.++|.+|++.|.+++..
T Consensus 166 ~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~---l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 166 DYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT---MNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH---hccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35668999999999999999999999999995444 4444444 5678889999999999999999998754
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.4e-45 Score=354.27 Aligned_cols=231 Identities=27% Similarity=0.393 Sum_probs=205.3
Q ss_pred CCCCccchhhhHHHHHHHHHHhHhhcCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcc
Q 015387 143 DLKNPLAVVEYVDDIYAYYRKIEISSCVSPTYMD-HQSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQ 221 (408)
Q Consensus 143 d~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~y~~-~q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~ 221 (408)
...||.++ .+|||++|++.|.++.++++|+. .|++|++.||.++++||++++.+|+++++|+++|++|+|||+++.
T Consensus 16 ~~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~ 92 (271)
T 2w96_A 16 AYPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLE 92 (271)
T ss_dssp ------------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTS
T ss_pred CCCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcC
Confidence 34677777 67999999999999999999985 689999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH
Q 015387 222 VVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK 301 (408)
Q Consensus 222 ~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~ 301 (408)
++.+.++|++|+||||||||+||..+|++++++.++++.|++++|++||+.||++|+|++++|||++||.+|++.++.+.
T Consensus 93 ~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~ 172 (271)
T 2w96_A 93 PVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAE 172 (271)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCH
T ss_pred CcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HH----HHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhcc----CCCc----hhhhhhhcCCCHHHHHHHHHHHH
Q 015387 302 KL----ELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQ----LKQW----TKTSEWLTNYPEDQLLECSRLMV 369 (408)
Q Consensus 302 ~~----~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~----~~~w----~~~l~~~tgys~~~L~~c~~~L~ 369 (408)
+. ...|++++++++.|+.|++|+||.||||||++|++.++. .+.| ...+..++||++++|.+|++.|.
T Consensus 173 ~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~ 252 (271)
T 2w96_A 173 ENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIE 252 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 43 457889999999999999999999999999999987742 2334 45788899999999999999999
Q ss_pred HHHhhcC
Q 015387 370 TLHEKAA 376 (408)
Q Consensus 370 ~l~~~~~ 376 (408)
+++....
T Consensus 253 ~l~~~~~ 259 (271)
T 2w96_A 253 ALLESSL 259 (271)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
Confidence 9986543
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.2e-36 Score=291.90 Aligned_cols=206 Identities=19% Similarity=0.264 Sum_probs=183.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhh--
Q 015387 180 DINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILIS-- 257 (408)
Q Consensus 180 ~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is-- 257 (408)
+....+|..+++||.+++.+|+|+++|+++|++|||||++++++.+.++|++|+||||||||+||. ++++++++.++
T Consensus 25 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 25 DKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999998 89999998664
Q ss_pred ------------ccccC--HHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhc-cccccC
Q 015387 258 ------------DNAYT--RKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLV-EYKMLK 322 (408)
Q Consensus 258 ------------~~~yt--~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~-d~~~l~ 322 (408)
++.|+ +++|++||+.||++|+|+++++||+.||.+|++.++.+.++..+|+++++.++. +..++.
T Consensus 104 ~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~ 183 (257)
T 2ivx_A 104 CLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQ 183 (257)
T ss_dssp HHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGT
T ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHc
Confidence 34555 899999999999999999999999999999999999999999999999999985 556899
Q ss_pred cCHHHHHHHHHHHHHHHhccC-------CCchhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCCchhhhcccCC
Q 015387 323 FPPSLLAAAAIYTAQCSLYQL-------KQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYRKFNT 389 (408)
Q Consensus 323 ~~PS~IAaAaI~lA~~~l~~~-------~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~~~~~~~~~i~~KYss 389 (408)
|+||.||+|||++|.+.++.. ..|...+ .++|++++|.+|++.|++++.+... .++.|++++.+
T Consensus 184 ~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~~-~l~~~~~~~~~ 254 (257)
T 2ivx_A 184 YKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTPN-RLKKIRNWRAN 254 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhChH-HhhHHHHhhhh
Confidence 999999999999999887632 3476543 4689999999999999999976554 67788877653
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=293.60 Aligned_cols=206 Identities=20% Similarity=0.276 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhcc--
Q 015387 182 NEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDN-- 259 (408)
Q Consensus 182 ~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~-- 259 (408)
..++|..+++||.+++.+|+|+++|+++|++|||||++++++.+.++|++|+||||||||+||..+|++++++.++..
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999988889999876532
Q ss_pred ------------ccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHH
Q 015387 260 ------------AYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSL 327 (408)
Q Consensus 260 ------------~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~ 327 (408)
.+++++|++||+.||++|+|++.++||+.||.+|++.++.+.++..+|+++++.++.++.++.|+||.
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~ 198 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFM 198 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-CCCchhhhhhhcCCCHHHHHHHHHHHHHHHhh----cCCCCchhhhcccCCcc
Q 015387 328 LAAAAIYTAQCSLYQ-LKQWTKTSEWLTNYPEDQLLECSRLMVTLHEK----AATGKLTGVYRKFNTSK 391 (408)
Q Consensus 328 IAaAaI~lA~~~l~~-~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~----~~~~~~~~i~~KYss~~ 391 (408)
||+|||++|.+.++. ...|.. .+|++.++|.+|+..|+++|.. .......++++||+.++
T Consensus 199 IAaAaiylA~~~~~~~~~~W~~----~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 199 IALACLHVACVVQQKDARQWFA----ELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHH----TSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHcCCChhhHHH----HHCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 999999999987653 245654 3599999999999999999864 23445788999999987
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.7e-36 Score=285.30 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=175.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhh
Q 015387 178 QSDINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILIS 257 (408)
Q Consensus 178 q~~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is 257 (408)
++++...+|..+++||.+++.+|+|+++|+++|++|||||++++++.+.++|++|+||||||||+||. ++++++++.++
T Consensus 33 ~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 33 DPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999995 88999998754
Q ss_pred c-----ccc------CHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcH----HHHHHHHHHHHHHhccccccC
Q 015387 258 D-----NAY------TRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDK----KLELLAFFIVELCLVEYKMLK 322 (408)
Q Consensus 258 ~-----~~y------t~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~----~~~~la~~llelsl~d~~~l~ 322 (408)
. +.| ++++|++||+.||++|+|++++|||+.|+.+|++.++.+. ++..+|++++++++.++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 3 344 4889999999999999999999999999999999988765 688999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhcc-CCCchhh-------hhhhcCCCHHHHHHHHHHHHHHHhhc
Q 015387 323 FPPSLLAAAAIYTAQCSLYQ-LKQWTKT-------SEWLTNYPEDQLLECSRLMVTLHEKA 375 (408)
Q Consensus 323 ~~PS~IAaAaI~lA~~~l~~-~~~w~~~-------l~~~tgys~~~L~~c~~~L~~l~~~~ 375 (408)
|+||.||+|||++|.+.++. .+.|... ...++|+++++|.+|++.|++++.+.
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSS
T ss_pred cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988763 2445432 12246999999999999999988644
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=273.39 Aligned_cols=186 Identities=15% Similarity=0.189 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccc-cchhhhHhHHHHhhhhccccCCcchhhHHhhhcc-----
Q 015387 186 RAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVR-KKLQLVGVTAMLLACKYEEVSVPIVDDFILISDN----- 259 (408)
Q Consensus 186 R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~-~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~----- 259 (408)
|..+++||.+++..|+|+++|+++|++|||||+++.++.+ .++|++|+||||||||+||. ++++++++.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 99999999999999999995 8889999998865
Q ss_pred -ccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHH
Q 015387 260 -AYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQC 338 (408)
Q Consensus 260 -~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~ 338 (408)
.+++++|++||+.||++|+|++.++||+.||.+|++.++.+.++...|+++++.++.++.++.|+||.||+|||++|.+
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~ 186 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCC 186 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred HhccC-CCchhhhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 015387 339 SLYQL-KQWTKTSEWLTNYPEDQLLECSRLMVTLHEKA 375 (408)
Q Consensus 339 ~l~~~-~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~~ 375 (408)
..+.. +.|...+ .|+++++|.+|++.|++++...
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 187 NDENTIPKLLDLI---KSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp SCTTHHHHHHHHC---CHHHHHHHHHHHHHHHHHHTSS
T ss_pred hcCCCCCCCcchh---hcCCHHHHHHHHHHHHHHHhhC
Confidence 54321 1243333 3899999999999999998654
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=8.9e-35 Score=291.86 Aligned_cols=202 Identities=20% Similarity=0.274 Sum_probs=177.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhh--
Q 015387 180 DINEKMRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILIS-- 257 (408)
Q Consensus 180 ~i~~~~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is-- 257 (408)
+....+|..+++||.+++.+|+|+++|+++|++|||||++++.+.+.++|+||+||||||||+||. ++++++++.++
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999999999999999999999999999 88999998765
Q ss_pred ------------ccccC--HHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhc-cccccC
Q 015387 258 ------------DNAYT--RKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLV-EYKMLK 322 (408)
Q Consensus 258 ------------~~~yt--~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~-d~~~l~ 322 (408)
+..|+ +++|++||+.||++|+|++.++||+.||.+|++.+..+.++..+|++++++++. +..++.
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~ 190 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQ 190 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhc
Confidence 33454 899999999999999999999999999999999999999999999999999996 445899
Q ss_pred cCHHHHHHHHHHHHHHHhccC-------CCchhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCCchhhhc
Q 015387 323 FPPSLLAAAAIYTAQCSLYQL-------KQWTKTSEWLTNYPEDQLLECSRLMVTLHEKAATGKLTGVYR 385 (408)
Q Consensus 323 ~~PS~IAaAaI~lA~~~l~~~-------~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~~~~~~~~~i~~ 385 (408)
|+||.||+|||++|.+.++.. ..|...+ ..+|++++|.+|++.|++++.+... +++.+..
T Consensus 191 y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~~i~~ 257 (358)
T 2pk2_A 191 YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN-RLKRIWN 257 (358)
T ss_dssp SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc-cccchhc
Confidence 999999999999999877521 3476543 3589999999999999999876554 4555553
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=2.2e-32 Score=270.97 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhcc-
Q 015387 183 EKMRAILIDWLLEVHYKFE--LMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDN- 259 (408)
Q Consensus 183 ~~~R~~lidWl~ev~~~~~--L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~- 259 (408)
..+|...++||.++|..|+ |+++|+++|++|||||++.+++.+.++|+||+||||||||+||. ++++++++..+..
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 4578899999999999999 99999999999999999999999999999999999999999998 6789999876542
Q ss_pred ----ccCHHHHHHHHHHHHHHcCCccccCcchhHHHHHHHHh-------cCcHHHHHHHHHHHHHHhccccccCcCHHHH
Q 015387 260 ----AYTRKEVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAA-------QSDKKLELLAFFIVELCLVEYKMLKFPPSLL 328 (408)
Q Consensus 260 ----~yt~~eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~-------~~~~~~~~la~~llelsl~d~~~l~~~PS~I 328 (408)
.|++++|++||+.||++|+|++.++||+.||.+|+..+ .....+...|+++++.++.++.++.|+||.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 46789999999999999999999999999999999765 2345788999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-CCCchhhhhhh--cCCCHHHHHHHHHHHHHHHhhcCC---CCchhhhccc
Q 015387 329 AAAAIYTAQCSLYQ-LKQWTKTSEWL--TNYPEDQLLECSRLMVTLHEKAAT---GKLTGVYRKF 387 (408)
Q Consensus 329 AaAaI~lA~~~l~~-~~~w~~~l~~~--tgys~~~L~~c~~~L~~l~~~~~~---~~~~~i~~KY 387 (408)
|+|||++|...++. .+.|...+..+ ++++.++|.+|++.|..++..... ..+++|.+|.
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL 277 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKL 277 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 99999999987764 36798877665 789999999999999998865322 2455666663
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=3.1e-28 Score=226.09 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHH
Q 015387 185 MRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRK 264 (408)
Q Consensus 185 ~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~ 264 (408)
......+||.+++..|+|++.|+.+|+.||+||+..+.+.+.+.+++++||||||||+||. +++++|++.+++ +++.
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKK 80 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHH
Confidence 3567889999999999999999999999999999999999999999999999999999997 899999998887 8999
Q ss_pred HHHHHHHHHHHHcCCccccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCC
Q 015387 265 EVLDMEKLLLNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLK 344 (408)
Q Consensus 265 eI~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~ 344 (408)
+|.++|+.||+.|+|++.+++|+.|+.+|++.++.+.++..+|+++++.++.+..+++++|+.||+||||+|.+.. +.+
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~-~~~ 159 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQAS-AEK 159 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTS-SSC
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHH-CCC
Confidence 9999999999999999999999999999999999999999999999999999888999999999999999998754 567
Q ss_pred CchhhhhhhcCCCHHHHHHHHHHHHHHHh
Q 015387 345 QWTKTSEWLTNYPEDQLLECSRLMVTLHE 373 (408)
Q Consensus 345 ~w~~~l~~~tgys~~~L~~c~~~L~~l~~ 373 (408)
.|...+..++|+++.+|.+|++.|.+...
T Consensus 160 ~~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 160 RTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999987543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.93 E-value=1.9e-24 Score=199.39 Aligned_cols=184 Identities=14% Similarity=0.121 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHH
Q 015387 185 MRAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRK 264 (408)
Q Consensus 185 ~R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~ 264 (408)
......++|.+++..++|++.+..+|..||+||+....+.+...+.++++||++|||.|+ .+++++|+..+++ ++..
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~ 84 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKK 84 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHH
Confidence 356789999999999999999999999999999999999999999999999999999988 5899999998876 7899
Q ss_pred HHHHHHHHHHHHcCCcccc--CcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhcc
Q 015387 265 EVLDMEKLLLNTLQFNMSV--PTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQ 342 (408)
Q Consensus 265 eI~~mE~~IL~~L~f~l~~--pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~ 342 (408)
+|.++++.|++.|+|++.. ++|+.|+.+|++.++.+.++...|+++++.+..+..+.+++|+.|||||||+|.+.. +
T Consensus 85 ~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~-~ 163 (200)
T 1ais_B 85 EIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE-G 163 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh-C
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999998654 5
Q ss_pred CCCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 015387 343 LKQWTKTSEWLTNYPEDQLLECSRLMVTLH 372 (408)
Q Consensus 343 ~~~w~~~l~~~tgys~~~L~~c~~~L~~l~ 372 (408)
.+.|...+..++|+++.+|..|++.|.+.+
T Consensus 164 ~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 164 EKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999999998865
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.9e-21 Score=192.81 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHH
Q 015387 186 RAILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKE 265 (408)
Q Consensus 186 R~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~e 265 (408)
.......|.+++..++|+..+...|..||.|++..+.+.....+.+++||||||||.|+. +++++|++.+++ +++++
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 356778899999999999999999999999999999999999999999999999998886 899999998876 78999
Q ss_pred HHHHHHHHHHHcC------------CccccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHH
Q 015387 266 VLDMEKLLLNTLQ------------FNMSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAI 333 (408)
Q Consensus 266 I~~mE~~IL~~L~------------f~l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI 333 (408)
|.++++.|++.|+ |++.+++|..||.+|++.++.+.++...|+++++.+..+..+.+++|+.||||||
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaI 282 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSI 282 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 015387 334 YTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLH 372 (408)
Q Consensus 334 ~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~ 372 (408)
|+|.... +...|...+...+|+++.+|+.+++.|.++.
T Consensus 283 ylAa~~~-~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 283 YLNILLF-QIPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9998765 4567888899999999999999999998765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.61 E-value=9.2e-16 Score=152.96 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHH
Q 015387 187 AILIDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEV 266 (408)
Q Consensus 187 ~~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI 266 (408)
......|.+++..++|+..+...|..||.+++....+.......++++|||+|||.++. +.++.|+..+++ .++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHH
Confidence 44566788999999999999999999999999999999999999999999999997775 889999998875 689999
Q ss_pred HHHHHHHHHHcCCc------------cccCcchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHH
Q 015387 267 LDMEKLLLNTLQFN------------MSVPTPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIY 334 (408)
Q Consensus 267 ~~mE~~IL~~L~f~------------l~~pTp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~ 334 (408)
.+..+.|.+.|+.. +...+|.+|+.+|+..++.+.++...|+.+++.+..+....+.+|+.|||||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIy 283 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 99999999999974 677899999999999999999999999999999988777789999999999999
Q ss_pred HHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHHh
Q 015387 335 TAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHE 373 (408)
Q Consensus 335 lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~ 373 (408)
+|.... +...-...+...+|+++.+|+..++.|.+...
T Consensus 284 lAa~l~-g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 284 LNILLF-QIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 998655 44445566788899999999999999887543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.27 E-value=4.5e-06 Score=80.60 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhhhhccc---ccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHH
Q 015387 189 LIDWLLEVHYKFELMDETLFLTINIVDKFLERQV---VVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKE 265 (408)
Q Consensus 189 lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~---v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~e 265 (408)
+-+|+.++.....++.+++-.|..|+||+..... +...+.+-+-++||.+|+|+-+.....-+.+..++ .++.+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHHH
Confidence 6679999999999999999999999999988533 55667888899999999999777677778887774 579999
Q ss_pred HHHHHHHHHHHcCCccccCcchhHHHHHHHH
Q 015387 266 VLDMEKLLLNTLQFNMSVPTPYVFMRRFLKA 296 (408)
Q Consensus 266 I~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~ 296 (408)
+-.||+..|..|+|++.++ +..|...++..
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 9999999999999999776 44555544443
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.30 E-value=0.00087 Score=60.74 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHHHH
Q 015387 190 IDWLLEVHYKFELMDETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVLDM 269 (408)
Q Consensus 190 idWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~~m 269 (408)
.++|.+.+..++++.++...|..++.+......+.......+++||+++||+.... +.+.+++..+++ ++...|.+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~ 185 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNR 185 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 35788899999999999999999999999888788889999999999999998764 567889888775 589999999
Q ss_pred HHHHHHHcCCccc
Q 015387 270 EKLLLNTLQFNMS 282 (408)
Q Consensus 270 E~~IL~~L~f~l~ 282 (408)
-+.+.+.|+..+.
T Consensus 186 ~~~l~~~l~~~~~ 198 (200)
T 1ais_B 186 YKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 9999999997653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.26 E-value=0.027 Score=51.03 Aligned_cols=86 Identities=8% Similarity=0.059 Sum_probs=73.7
Q ss_pred chhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHH
Q 015387 286 PYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECS 365 (408)
Q Consensus 286 p~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~ 365 (408)
...+|..+...++..+.+...|..+....+....+-++++..+|+||+|+|.+.. +.+.....+...++++..+|..+.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~e-e~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE-GVPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCHHHHHHHH
Confidence 5678999999999999999999999999888888889999999999999998764 445556677778899999999999
Q ss_pred HHHHHHH
Q 015387 366 RLMVTLH 372 (408)
Q Consensus 366 ~~L~~l~ 372 (408)
+.|++.+
T Consensus 87 ~~ll~~L 93 (207)
T 1c9b_A 87 KLILKAL 93 (207)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888754
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.04 E-value=0.22 Score=49.08 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=71.9
Q ss_pred cchhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHH
Q 015387 285 TPYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLEC 364 (408)
Q Consensus 285 Tp~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c 364 (408)
..+..|..++..++....+...|..+...+.....+-+.+...+||||||+|++.. +.+.....+...++++..+|..+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~-~~prtl~eI~~~~~v~~keigr~ 206 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA-EVARTFKEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHT-CCBCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhc-CCCccHHHHHHHhCCCHHHHHHH
Confidence 36677788888999999999999999988877666668999999999999998754 45555566777889999999999
Q ss_pred HHHHHHHHh
Q 015387 365 SRLMVTLHE 373 (408)
Q Consensus 365 ~~~L~~l~~ 373 (408)
++.|...+.
T Consensus 207 ~k~l~~~L~ 215 (345)
T 4bbr_M 207 LNIMKNILR 215 (345)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHHhC
Confidence 999887543
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.58 E-value=0.47 Score=43.65 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=68.0
Q ss_pred chhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccC-cCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--------CC
Q 015387 286 PYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLK-FPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--------NY 356 (408)
Q Consensus 286 p~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~-~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--------gy 356 (408)
..++|......++.......+|..+++..+....+.. +.+..+|+||+++|.+.-. .+.-...+...+ .+
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccchhhc
Confidence 4567888888888899999999999999888888888 9999999999999987654 333333333333 57
Q ss_pred CHHHHHHHHHHHHHHHh
Q 015387 357 PEDQLLECSRLMVTLHE 373 (408)
Q Consensus 357 s~~~L~~c~~~L~~l~~ 373 (408)
+.++|..+-..|+.-+.
T Consensus 110 ~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLD 126 (235)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 89999999888877543
No 24
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=92.14 E-value=1.1 Score=42.21 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=68.0
Q ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHH
Q 015387 287 YVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLEC 364 (408)
Q Consensus 287 ~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c 364 (408)
.+||......++.......+|..+++..+....+-...+-.+|+||+++|.+.-...++-...+...+ .|+.++|..+
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 35666777777888888889999999988877788889999999999999887654344445555666 4899999999
Q ss_pred HHHHHHHHh
Q 015387 365 SRLMVTLHE 373 (408)
Q Consensus 365 ~~~L~~l~~ 373 (408)
-..|+..+.
T Consensus 122 E~~IL~~L~ 130 (269)
T 2b9r_A 122 EMKILRALN 130 (269)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 988887553
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.12 Score=50.85 Aligned_cols=87 Identities=15% Similarity=0.069 Sum_probs=72.4
Q ss_pred chhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHH
Q 015387 286 PYVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECS 365 (408)
Q Consensus 286 p~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~ 365 (408)
.+.+|..+...++..+.+...|..+...++....+-+.+...+|+||||+|.+. .+.+.-...+...++++..+|..++
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~-e~~prtl~ei~~~~~v~~keIgr~~ 207 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBT-TBSSCCHHHHHHSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHH-cCCCccHHHHHHHHCCCHHHHHHHH
Confidence 567888888899999999999999998887776677889999999999999764 3445555667778899999999999
Q ss_pred HHHHHHHh
Q 015387 366 RLMVTLHE 373 (408)
Q Consensus 366 ~~L~~l~~ 373 (408)
+.|.+.+.
T Consensus 208 ~~l~~~L~ 215 (345)
T 3k7a_M 208 NIMKNILR 215 (345)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988764
No 26
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=90.62 E-value=1.6 Score=40.95 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=60.4
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHHH
Q 015387 288 VFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLECS 365 (408)
Q Consensus 288 ~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c~ 365 (408)
+||......++.......+|..+++.-+....+.....-.+|+||+++|.+.-...+.-...+...+ .|+.++|..+-
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 3444444555555666667777777777766777888999999999999987654333334445555 48999999998
Q ss_pred HHHHHHHh
Q 015387 366 RLMVTLHE 373 (408)
Q Consensus 366 ~~L~~l~~ 373 (408)
..|+.-+.
T Consensus 142 ~~IL~~L~ 149 (271)
T 2w96_A 142 LLLVNKLK 149 (271)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88876543
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.61 E-value=1.1 Score=41.59 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhh-hcccccccchhhhHhHHHHhhhhccccCCcchh---hHHhhhccccCHHH
Q 015387 190 IDWLLEVHYKFELMDETLFLTINIVDKFL-ERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVD---DFILISDNAYTRKE 265 (408)
Q Consensus 190 idWl~ev~~~~~L~~eTl~lAV~l~DRfL-s~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~---dlv~is~~~yt~~e 265 (408)
.+|+......++.+.++..+|..++..-+ .....-......+|+||+++|+++-....|... .+....+..++.++
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~ 226 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLEL 226 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHH
Confidence 34666777888888888889988885544 233355667789999999999998654443211 12222233578999
Q ss_pred HHHHHHHHHHHc
Q 015387 266 VLDMEKLLLNTL 277 (408)
Q Consensus 266 I~~mE~~IL~~L 277 (408)
|..+-..|++.+
T Consensus 227 l~~~~~~i~~~~ 238 (257)
T 2ivx_A 227 LDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=90.54 E-value=1.2 Score=41.49 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=62.7
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHHH
Q 015387 288 VFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLECS 365 (408)
Q Consensus 288 ~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c~ 365 (408)
+||......++.......+|..+++..+....+.....-.+|+||+++|.+.-...++-...+...+ .|+.++|..+-
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHH
Confidence 4555566666777777777777777777666666677889999999999887654344445555555 48999999998
Q ss_pred HHHHHHHh
Q 015387 366 RLMVTLHE 373 (408)
Q Consensus 366 ~~L~~l~~ 373 (408)
..|+..+.
T Consensus 124 ~~iL~~L~ 131 (260)
T 2cch_B 124 HLVLKVLT 131 (260)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88887543
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=90.27 E-value=1.5 Score=40.87 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=64.1
Q ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHH
Q 015387 287 YVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLEC 364 (408)
Q Consensus 287 ~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c 364 (408)
.+||.......+.......+|-.+++..+.....-....-.+|+||+++|.+.-...++-...+...+ .|+.++|..+
T Consensus 55 vdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 134 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQ 134 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHH
Confidence 34555666667777888888888888888777777778889999999999987654344444555555 4899999998
Q ss_pred HHHHHHHH
Q 015387 365 SRLMVTLH 372 (408)
Q Consensus 365 ~~~L~~l~ 372 (408)
-..|+.-+
T Consensus 135 E~~iL~~L 142 (257)
T 1g3n_C 135 EKELLEKL 142 (257)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 88877654
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=90.01 E-value=1.6 Score=40.51 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=64.6
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHHH
Q 015387 288 VFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLECS 365 (408)
Q Consensus 288 ~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c~ 365 (408)
+|+.......+.......+|-.+++..+.....-....-.+|+||+++|.+.-...++-...+...+ .|+.++|..+-
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 4555566667777778888888999888877778889999999999999987654444344454554 48999999988
Q ss_pred HHHHHHHh
Q 015387 366 RLMVTLHE 373 (408)
Q Consensus 366 ~~L~~l~~ 373 (408)
..|+..+.
T Consensus 137 ~~IL~~L~ 144 (254)
T 2f2c_A 137 KDILEALK 144 (254)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88877553
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=89.77 E-value=2.1 Score=40.54 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc------------
Q 015387 287 YVFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT------------ 354 (408)
Q Consensus 287 ~~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t------------ 354 (408)
.+||......++.......+|..+++.-+....+..+.+..+|+||+++|.+.-.....-...+...+
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 45677777788888899999999999988888889999999999999999876432221112221111
Q ss_pred ----CCCHHHHHHHHHHHHHHH
Q 015387 355 ----NYPEDQLLECSRLMVTLH 372 (408)
Q Consensus 355 ----gys~~~L~~c~~~L~~l~ 372 (408)
.++.++|..+-..|+.-+
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHc
Confidence 267788888888877654
No 32
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.35 E-value=1.4 Score=40.89 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCh----hHHHHHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchh------hHHhhhcc
Q 015387 190 IDWLLEVHYKFELMD----ETLFLTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVD------DFILISDN 259 (408)
Q Consensus 190 idWl~ev~~~~~L~~----eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~------dlv~is~~ 259 (408)
.+|+...+..++.+. +...+|..+++.-+............+|+||+++|+++-....|... ..-.....
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~ 231 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQ 231 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSS
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhcc
Confidence 357777888888876 57788999998887766677788899999999999998654333211 11111123
Q ss_pred ccCHHHHHHHHHHHHHHcC
Q 015387 260 AYTRKEVLDMEKLLLNTLQ 278 (408)
Q Consensus 260 ~yt~~eI~~mE~~IL~~L~ 278 (408)
.++.++|...-..|++...
T Consensus 232 ~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 232 DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SCCHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6899999999999987654
No 33
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.30 E-value=3.2 Score=39.29 Aligned_cols=85 Identities=9% Similarity=0.077 Sum_probs=60.0
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-ccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHH
Q 015387 288 VFMRRFLKAAQSDKKLELLAFFIVELCLVE-YKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLEC 364 (408)
Q Consensus 288 ~FL~~fl~~~~~~~~~~~la~~llelsl~d-~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c 364 (408)
+||.......+.......+|..+++..+.- ...-....-.+|+||+++|.+.-...++-...+...+ .|+.++|..+
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 445555555666667777777777776654 3456788999999999999987654344445555555 5899999999
Q ss_pred HHHHHHHH
Q 015387 365 SRLMVTLH 372 (408)
Q Consensus 365 ~~~L~~l~ 372 (408)
-..|+..+
T Consensus 135 E~~IL~~L 142 (283)
T 1w98_B 135 ELMIMKAL 142 (283)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88887654
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=87.93 E-value=2.4 Score=40.70 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=59.6
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHHH
Q 015387 288 VFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLECS 365 (408)
Q Consensus 288 ~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c~ 365 (408)
+||......++.......+|-.+++.-+....+.....-.+|++|+++|.+.-...+.-...+..++ .|+.++|..+-
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHH
Confidence 3444445555566666666777777766666677888999999999999987554333334455555 48999999988
Q ss_pred HHHHHHHh
Q 015387 366 RLMVTLHE 373 (408)
Q Consensus 366 ~~L~~l~~ 373 (408)
..|+.-+.
T Consensus 156 ~~IL~~L~ 163 (306)
T 3g33_B 156 VLVLGKLK 163 (306)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88876543
No 35
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.23 E-value=1.1 Score=44.11 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhh-cccccccchhhhHhHHHHhhhhccccCCcch---hhHHhhhccccCHHHH
Q 015387 191 DWLLEVHYKFELMDETLFLTINIVDKFLE-RQVVVRKKLQLVGVTAMLLACKYEEVSVPIV---DDFILISDNAYTRKEV 266 (408)
Q Consensus 191 dWl~ev~~~~~L~~eTl~lAV~l~DRfLs-~~~v~~~~lqLva~acL~IAsK~EE~~~p~i---~dlv~is~~~yt~~eI 266 (408)
+||......++.+.++..+|.+++..-+. ...........||+|||++|+++-....|.. ..+....+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35666677788888888899988865553 3334566778999999999999866444321 1222222335789999
Q ss_pred HHHHHHHHHHc
Q 015387 267 LDMEKLLLNTL 277 (408)
Q Consensus 267 ~~mE~~IL~~L 277 (408)
..+-..|++.+
T Consensus 235 ~~i~~~il~~y 245 (358)
T 2pk2_A 235 DELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999765
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=86.44 E-value=19 Score=32.76 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhccc---ccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHH
Q 015387 188 ILIDWLLEVHYKFELMDETLFLTINIVDKFLERQV---VVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRK 264 (408)
Q Consensus 188 ~lidWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~---v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~ 264 (408)
.+.+-|..++.+-+++..++--|+.+--.|.-.+. ..-.+-+-|+++|+.||+- +-..|..+.++..+ +.....=
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae-~~~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE-EAQQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH-HcCCCccHHHHHHH-hhhhhHH
Confidence 34566789999999999999999999988876444 4445678999999999997 44456666776543 3333322
Q ss_pred HHHHHHHHHHHHcCCcc-----ccCcchhHHHHHHHHhcCcHHHHHH-HHHHHHHHhccccccCcCHHHHHHHHHHHHHH
Q 015387 265 EVLDMEKLLLNTLQFNM-----SVPTPYVFMRRFLKAAQSDKKLELL-AFFIVELCLVEYKMLKFPPSLLAAAAIYTAQC 338 (408)
Q Consensus 265 eI~~mE~~IL~~L~f~l-----~~pTp~~FL~~fl~~~~~~~~~~~l-a~~llelsl~d~~~l~~~PS~IAaAaI~lA~~ 338 (408)
++.+ ..|++.|+..= .-.-.-..|..|+..++..-.++.. +..+++..-.-..+..+---.--.-|+++|+.
T Consensus 92 elrr--~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLArT 169 (260)
T 3h4c_A 92 ELRR--ADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLART 169 (260)
T ss_dssp HHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 2222 33556555421 1112233445555555544333222 22333332222223344444444556677752
Q ss_pred HhccCCCch
Q 015387 339 SLYQLKQWT 347 (408)
Q Consensus 339 ~l~~~~~w~ 347 (408)
...-.|.
T Consensus 170 --~~~l~W~ 176 (260)
T 3h4c_A 170 --AQTLSWE 176 (260)
T ss_dssp --SCGGGGC
T ss_pred --ccccccc
Confidence 2334554
No 37
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=85.43 E-value=6.2 Score=38.08 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=60.0
Q ss_pred hHHHHHHHHhc--CcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcC-------CCH
Q 015387 288 VFMRRFLKAAQ--SDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTN-------YPE 358 (408)
Q Consensus 288 ~FL~~fl~~~~--~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tg-------ys~ 358 (408)
.+|..+...++ ....+..+|..+++.-+....+..+.|-.||+||+|+|.+.-.. +.-...+...+. ++.
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~~~ 140 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEKAL 140 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHHHH
Confidence 45667777777 78888899999999999888899999999999999999876443 222222322232 224
Q ss_pred HHHHHHHHHHHHHH
Q 015387 359 DQLLECSRLMVTLH 372 (408)
Q Consensus 359 ~~L~~c~~~L~~l~ 372 (408)
++|..+-..|+.-+
T Consensus 141 ~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 141 EQILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 66777776666543
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=85.14 E-value=4.9 Score=38.55 Aligned_cols=89 Identities=8% Similarity=0.015 Sum_probs=69.9
Q ss_pred cchhHHHHHHHHhcCcHHHHHHHHHHHHHHhc-ccc--ccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHH
Q 015387 285 TPYVFMRRFLKAAQSDKKLELLAFFIVELCLV-EYK--MLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQL 361 (408)
Q Consensus 285 Tp~~FL~~fl~~~~~~~~~~~la~~llelsl~-d~~--~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L 361 (408)
+...|+.++.+..........++..+++.... ... .-.....-+-.+|+.+|.+.+++...|+.....+.|++..++
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 45689999998888877777667666665443 222 335778889999999999999998888888889999999999
Q ss_pred HHHHHHHHHHHh
Q 015387 362 LECSRLMVTLHE 373 (408)
Q Consensus 362 ~~c~~~L~~l~~ 373 (408)
...=..++.++.
T Consensus 156 N~LE~eFL~lLd 167 (293)
T 2pmi_B 156 NILENDFLKRVN 167 (293)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC
Confidence 988887776543
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=76.18 E-value=14 Score=34.30 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHhccCCCchhhhhhhc--CCCHHHHHHHH
Q 015387 288 VFMRRFLKAAQSDKKLELLAFFIVELCLVEYKMLKFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLT--NYPEDQLLECS 365 (408)
Q Consensus 288 ~FL~~fl~~~~~~~~~~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~t--gys~~~L~~c~ 365 (408)
+|+.......+.......+|-.+++.-+.....-....-.+|++|+++|.+.-...+.-...+..++ .|+.++|...=
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE 133 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLE 133 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 4444455555666666677777777766655666777889999999999987654333334444444 58899998877
Q ss_pred HHHHHHH
Q 015387 366 RLMVTLH 372 (408)
Q Consensus 366 ~~L~~l~ 372 (408)
..|+..+
T Consensus 134 ~~IL~~L 140 (252)
T 1f5q_B 134 VKSLDTL 140 (252)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 7776654
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=66.25 E-value=27 Score=27.74 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=55.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhhhhccc------ccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHH
Q 015387 193 LLEVHYKFELMDETLFLTINIVDKFLERQV------VVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEV 266 (408)
Q Consensus 193 l~ev~~~~~L~~eTl~lAV~l~DRfLs~~~------v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI 266 (408)
+.++|..|++.. ....|-.++++|=..-+ +.-.+ -...++|+|.|||.--..+.. ..|+..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~-P~f~aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR-PLFTSAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS-HHHHHHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc-cHHHHHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 457889999765 78889999999975432 22223 356789999999988776665 34655554 468888
Q ss_pred HHHHHHHHHH
Q 015387 267 LDMEKLLLNT 276 (408)
Q Consensus 267 ~~mE~~IL~~ 276 (408)
-+.+..+-+.
T Consensus 81 ~~l~~~~e~~ 90 (95)
T 3m03_A 81 DRLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 41
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=44.54 E-value=25 Score=30.53 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=39.7
Q ss_pred cCCChhHHH---HHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHHH
Q 015387 200 FELMDETLF---LTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEVL 267 (408)
Q Consensus 200 ~~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI~ 267 (408)
+++..++++ +|.+|||- -.|+-++|-.+|.++....+-.++.+..+.+ -||+++-.
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~n-d~t~eEe~ 157 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN-DFTPEEEA 157 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC-CCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHH
Confidence 457777775 56676654 2577889999999998776766777777654 48877543
No 42
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=43.05 E-value=33 Score=29.26 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCChhHHH---HHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHH
Q 015387 201 ELMDETLF---LTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEV 266 (408)
Q Consensus 201 ~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI 266 (408)
+++.++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+.+ -||+++-
T Consensus 93 ~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~-d~t~eEe 149 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKN-DFTEEEE 149 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCC-CSCTTHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 56777665 56666653 2477889999999998876666777766643 4776554
No 43
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=42.45 E-value=41 Score=32.27 Aligned_cols=71 Identities=7% Similarity=-0.055 Sum_probs=48.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhhhhc----ccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHH
Q 015387 193 LLEVHYKFELMDETLFLTINIVDKFLER----QVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEV 266 (408)
Q Consensus 193 l~ev~~~~~L~~eTl~lAV~l~DRfLs~----~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI 266 (408)
..++|..++++..|...|..++.+.-+. .....+ -+..-.+|||+||.-.+....++.+|++.++ .+-.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~--lsi~~F 80 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE--ISVHKF 80 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT--CCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC--CCHHHH
Confidence 4578999999999999999999996653 122223 3333455599999877777788888887763 344443
No 44
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=42.26 E-value=29 Score=29.71 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCChhHHH---HHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhhhccccCHHHH
Q 015387 201 ELMDETLF---LTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILISDNAYTRKEV 266 (408)
Q Consensus 201 ~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~is~~~yt~~eI 266 (408)
+++.++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+.+ -||+++-
T Consensus 92 ~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNI-----------KNLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp ---------CHHHHHHTTC-----------HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 35555554 56666653 2478889999999998776666677776643 4787654
No 45
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=28.33 E-value=68 Score=26.70 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=30.5
Q ss_pred cCCChhHHH---HHHHHHHhhhhcccccccchhhhHhHHHHhhhhccccCCcchhhHHhh
Q 015387 200 FELMDETLF---LTINIVDKFLERQVVVRKKLQLVGVTAMLLACKYEEVSVPIVDDFILI 256 (408)
Q Consensus 200 ~~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dlv~i 256 (408)
++++.++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+
T Consensus 87 ~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~f~I 135 (141)
T 1fs1_B 87 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNI 135 (141)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHTC-
T ss_pred HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 467777776 57777664 25778899999999876654444444443
No 46
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=27.90 E-value=1.6e+02 Score=23.14 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=38.8
Q ss_pred CcCHHHHHHHHHHHHHHHhccCCCchhhhhhhcCCCHHHHHHHHHHHHHHHhh
Q 015387 322 KFPPSLLAAAAIYTAQCSLYQLKQWTKTSEWLTNYPEDQLLECSRLMVTLHEK 374 (408)
Q Consensus 322 ~~~PS~IAaAaI~lA~~~l~~~~~w~~~l~~~tgys~~~L~~c~~~L~~l~~~ 374 (408)
.+.--.-++||+|.+.+..+ ...-...|...+|++..++..++..|..+..+
T Consensus 42 D~s~P~f~aaA~~~acr~~K-~kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILK-LKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHc-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 34455667888999987665 34444567788999999999999999887643
No 47
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=23.65 E-value=1.1e+02 Score=25.84 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHc---CCChhHHHHHHHHHHhhhhc------ccccccchhhhHhHHHHhhhhc--cccCCcchhhHHh
Q 015387 187 AILIDWLLEVHYKF---ELMDETLFLTINIVDKFLER------QVVVRKKLQLVGVTAMLLACKY--EEVSVPIVDDFIL 255 (408)
Q Consensus 187 ~~lidWl~ev~~~~---~L~~eTl~lAV~l~DRfLs~------~~v~~~~lqLva~acL~IAsK~--EE~~~p~i~dlv~ 255 (408)
..+|-|+..|-+.+ |-.+..+-.-.+++=-|+.. ..-....+|.+..|||+||=-| .|++.|.-.-++.
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYPLKPFlv~ 107 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVE 107 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhcccccccCcchhhc
Confidence 57889999987665 33333333333333333322 2234556999999999999888 6777776444442
Q ss_pred hhccccCHHHHHHHHHHHHHHcCC
Q 015387 256 ISDNAYTRKEVLDMEKLLLNTLQF 279 (408)
Q Consensus 256 is~~~yt~~eI~~mE~~IL~~L~f 279 (408)
- +++.+..-=..|++.+.=
T Consensus 108 ~-----~k~~FW~rcl~iin~~S~ 126 (149)
T 3o0g_D 108 S-----CKEAFWDRCLSVINLMSS 126 (149)
T ss_dssp S-----CHHHHHHHHHHHHHHHHH
T ss_pred c-----cHHHHHHHHHHHHHhhch
Confidence 2 466655555555555433
No 48
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=20.10 E-value=73 Score=19.26 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 015387 263 RKEVLDMEKLLLNTLQFN 280 (408)
Q Consensus 263 ~~eI~~mE~~IL~~L~f~ 280 (408)
.++|.++|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999986
Done!