Query 015392
Match_columns 408
No_of_seqs 276 out of 2070
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.2E-56 2.6E-61 429.2 28.0 277 132-408 4-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.6E-53 3.4E-58 419.7 32.4 304 101-408 2-306 (308)
3 PRK13106 ubiA prenyltransferas 100.0 3.8E-35 8.3E-40 287.8 29.2 273 99-394 3-282 (300)
4 PRK12895 ubiA prenyltransferas 100.0 4.4E-35 9.5E-40 285.3 28.7 259 111-391 2-263 (286)
5 TIGR01475 ubiA_other putative 100.0 1.4E-34 2.9E-39 282.5 29.3 261 111-392 1-264 (282)
6 TIGR01476 chlor_syn_BchG bacte 100.0 7.4E-34 1.6E-38 277.4 29.1 222 113-346 1-223 (283)
7 PRK12870 ubiA 4-hydroxybenzoat 100.0 3.9E-34 8.5E-39 280.1 26.8 265 108-396 5-277 (290)
8 PRK12874 ubiA prenyltransferas 100.0 1.9E-33 4.1E-38 275.2 31.2 266 106-392 2-272 (291)
9 PLN00012 chlorophyll synthetas 100.0 3E-33 6.6E-38 281.4 33.2 222 107-341 80-309 (375)
10 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.5E-33 3.2E-38 274.8 28.9 253 111-387 2-255 (279)
11 PRK12888 ubiA prenyltransferas 100.0 1.6E-33 3.6E-38 274.8 28.7 259 111-390 1-263 (284)
12 PRK07566 bacteriochlorophyll/c 100.0 2.9E-33 6.4E-38 276.9 30.5 226 108-344 23-249 (314)
13 PRK12884 ubiA prenyltransferas 100.0 3.3E-33 7.2E-38 272.2 30.2 256 110-389 2-258 (279)
14 PRK12882 ubiA prenyltransferas 100.0 1.4E-33 3E-38 274.5 27.1 259 111-391 3-262 (276)
15 PRK12886 ubiA prenyltransferas 100.0 6.1E-33 1.3E-37 271.7 31.1 266 108-396 4-273 (291)
16 PLN02809 4-hydroxybenzoate non 100.0 6.1E-33 1.3E-37 271.2 30.6 262 109-391 3-269 (289)
17 PRK12392 bacteriochlorophyll c 100.0 1.6E-32 3.5E-37 272.5 30.4 255 108-377 8-270 (331)
18 PRK12876 ubiA prenyltransferas 100.0 1.8E-32 3.9E-37 267.3 30.1 285 110-408 2-299 (300)
19 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.1E-32 4.6E-37 267.4 30.7 266 108-396 3-274 (285)
20 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.6E-32 3.4E-37 267.9 28.4 263 109-395 2-270 (282)
21 COG0382 UbiA 4-hydroxybenzoate 100.0 3E-32 6.5E-37 266.9 29.9 274 108-404 6-284 (289)
22 PRK05951 ubiA prenyltransferas 100.0 5.8E-32 1.3E-36 265.6 31.6 268 110-392 2-278 (296)
23 PRK12878 ubiA 4-hydroxybenzoat 100.0 7.2E-32 1.6E-36 266.6 31.4 266 105-392 23-296 (314)
24 TIGR02056 ChlG chlorophyll syn 100.0 5.5E-32 1.2E-36 266.9 29.9 225 107-346 11-245 (306)
25 PRK12873 ubiA prenyltransferas 100.0 1.2E-31 2.5E-36 261.6 27.6 266 110-397 5-282 (294)
26 TIGR01474 ubiA_proteo 4-hydrox 100.0 3.7E-31 8E-36 258.2 29.8 257 113-391 2-263 (281)
27 PRK13595 ubiA prenyltransferas 100.0 3.1E-31 6.7E-36 257.1 27.7 266 108-402 8-277 (292)
28 PRK12869 ubiA protoheme IX far 100.0 1.3E-30 2.9E-35 254.0 29.9 265 111-397 1-270 (279)
29 PRK04375 protoheme IX farnesyl 100.0 2E-30 4.3E-35 254.8 30.3 267 108-396 6-278 (296)
30 PRK12883 ubiA prenyltransferas 100.0 1.3E-30 2.8E-35 253.8 28.6 205 111-336 2-206 (277)
31 PRK06080 1,4-dihydroxy-2-napht 100.0 5.8E-30 1.3E-34 251.1 32.5 231 111-356 2-240 (293)
32 PRK13387 1,4-dihydroxy-2-napht 100.0 6E-30 1.3E-34 253.3 32.2 238 112-357 3-262 (317)
33 TIGR01473 cyoE_ctaB protoheme 100.0 2.2E-29 4.8E-34 245.6 30.4 264 113-397 1-271 (280)
34 PRK13362 protoheme IX farnesyl 100.0 6.1E-29 1.3E-33 244.9 30.3 209 108-334 9-220 (306)
35 PRK07419 1,4-dihydroxy-2-napht 100.0 8.3E-28 1.8E-32 236.3 31.1 234 109-358 9-248 (304)
36 PLN02922 prenyltransferase 100.0 2.3E-27 5.1E-32 234.3 32.9 238 109-356 12-260 (315)
37 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.2E-27 2.5E-32 233.5 28.5 225 120-358 1-238 (284)
38 PRK12871 ubiA prenyltransferas 100.0 1.9E-27 4.1E-32 233.4 29.9 271 110-404 3-293 (297)
39 TIGR02235 menA_cyano-plnt 1,4- 100.0 2.4E-26 5.2E-31 224.4 31.2 229 115-359 2-236 (285)
40 PRK13105 ubiA prenyltransferas 100.0 9.2E-27 2E-31 226.4 27.1 217 112-346 1-222 (282)
41 COG1575 MenA 1,4-dihydroxy-2-n 100.0 6.9E-26 1.5E-30 218.8 30.6 277 110-404 6-299 (303)
42 PRK12872 ubiA prenyltransferas 100.0 5.9E-26 1.3E-30 221.7 27.2 230 110-356 2-233 (285)
43 PF01040 UbiA: UbiA prenyltran 99.9 2.7E-26 5.9E-31 219.2 22.9 188 127-331 4-193 (257)
44 KOG1381 Para-hydroxybenzoate-p 99.9 4.3E-27 9.3E-32 220.4 12.3 278 103-401 55-338 (353)
45 PRK12875 ubiA prenyltransferas 99.9 1.6E-24 3.5E-29 211.0 27.5 220 108-347 4-228 (282)
46 PLN02776 prenyltransferase 99.9 5.7E-24 1.2E-28 210.8 28.7 195 118-332 1-201 (341)
47 COG0109 CyoE Polyprenyltransfe 99.9 6.9E-25 1.5E-29 211.4 21.2 261 108-391 14-281 (304)
48 PRK13591 ubiA prenyltransferas 99.9 6E-24 1.3E-28 207.2 25.6 180 159-354 66-249 (307)
49 PRK13592 ubiA prenyltransferas 99.9 9.3E-24 2E-28 204.2 24.5 178 152-343 47-232 (299)
50 PRK08238 hypothetical protein; 99.9 1.3E-19 2.8E-24 188.5 25.3 192 105-317 184-377 (479)
51 PRK12324 phosphoribose diphosp 99.9 3.8E-19 8.3E-24 174.1 26.9 150 108-267 7-158 (295)
52 KOG1380 Heme A farnesyltransfe 99.5 1.8E-14 4E-19 138.7 8.1 260 109-396 91-359 (409)
53 KOG4581 Predicted membrane pro 99.4 5.2E-13 1.1E-17 123.3 8.9 227 108-349 57-294 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 92.1 0.63 1.4E-05 46.0 8.1 35 155-189 180-214 (303)
55 PRK12872 ubiA prenyltransferas 89.6 2.7 5.8E-05 40.9 10.0 34 159-192 169-203 (285)
56 PRK13591 ubiA prenyltransferas 88.2 1.2 2.7E-05 44.2 6.5 66 169-237 197-271 (307)
57 PRK07419 1,4-dihydroxy-2-napht 87.9 4.4 9.6E-05 40.3 10.2 38 162-202 185-223 (304)
58 TIGR01474 ubiA_proteo 4-hydrox 87.1 4.5 9.7E-05 39.6 9.7 37 156-192 165-202 (281)
59 PRK13387 1,4-dihydroxy-2-napht 85.7 3.1 6.6E-05 41.6 7.8 50 156-208 194-244 (317)
60 PRK13105 ubiA prenyltransferas 85.0 8.2 0.00018 37.9 10.3 57 158-217 167-224 (282)
61 PRK12847 ubiA 4-hydroxybenzoat 84.9 6.6 0.00014 38.4 9.7 37 156-192 170-207 (285)
62 PRK13592 ubiA prenyltransferas 84.5 22 0.00047 35.3 12.9 46 295-341 57-105 (299)
63 TIGR01475 ubiA_other putative 83.9 4.6 0.0001 39.4 8.1 36 157-192 164-200 (282)
64 PLN02922 prenyltransferase 83.7 4.5 9.7E-05 40.4 8.0 41 159-202 196-237 (315)
65 TIGR02235 menA_cyano-plnt 1,4- 83.2 10 0.00022 37.3 10.2 45 159-206 169-214 (285)
66 PRK12324 phosphoribose diphosp 82.6 6.7 0.00014 38.9 8.6 40 297-336 59-102 (295)
67 TIGR02056 ChlG chlorophyll syn 82.2 10 0.00022 37.6 9.9 42 295-337 65-109 (306)
68 PRK12875 ubiA prenyltransferas 81.9 11 0.00023 37.1 9.8 54 158-214 172-226 (282)
69 PLN00012 chlorophyll synthetas 80.2 5.7 0.00012 40.7 7.4 33 160-192 261-294 (375)
70 PRK06080 1,4-dihydroxy-2-napht 80.2 13 0.00027 36.4 9.7 46 158-206 175-221 (293)
71 PRK12884 ubiA prenyltransferas 80.0 14 0.00031 35.8 9.9 29 297-326 50-78 (279)
72 TIGR00751 menA 1,4-dihydroxy-2 77.9 19 0.00041 35.4 10.0 42 161-205 174-216 (284)
73 PRK13595 ubiA prenyltransferas 77.4 47 0.001 32.9 12.5 22 297-318 60-81 (292)
74 PRK13106 ubiA prenyltransferas 77.1 5.8 0.00013 39.3 6.2 36 157-192 183-219 (300)
75 PRK12870 ubiA 4-hydroxybenzoat 76.8 18 0.00039 35.6 9.6 39 156-194 171-210 (290)
76 PRK12848 ubiA 4-hydroxybenzoat 76.6 23 0.0005 34.5 10.3 39 155-193 166-205 (282)
77 PRK07566 bacteriochlorophyll/c 76.3 7.4 0.00016 38.7 6.8 31 162-192 200-231 (314)
78 PRK12888 ubiA prenyltransferas 75.4 27 0.0006 34.2 10.4 36 157-192 165-201 (284)
79 PRK12871 ubiA prenyltransferas 74.2 21 0.00046 35.3 9.3 36 157-192 181-217 (297)
80 PRK12886 ubiA prenyltransferas 73.7 8.5 0.00019 37.9 6.4 35 158-192 169-204 (291)
81 PF01040 UbiA: UbiA prenyltran 72.9 19 0.00041 33.8 8.4 32 295-326 34-66 (257)
82 PRK09573 (S)-2,3-di-O-geranylg 72.8 32 0.00069 33.4 10.2 39 297-336 50-91 (279)
83 TIGR01476 chlor_syn_BchG bacte 72.3 12 0.00027 36.3 7.2 31 162-192 172-203 (283)
84 PRK12392 bacteriochlorophyll c 71.4 13 0.00029 37.4 7.2 34 158-191 187-221 (331)
85 PRK12874 ubiA prenyltransferas 69.9 25 0.00054 34.7 8.7 35 158-192 174-209 (291)
86 COG0382 UbiA 4-hydroxybenzoate 69.9 98 0.0021 30.2 12.9 73 107-184 8-85 (289)
87 PRK08238 hypothetical protein; 69.4 21 0.00045 37.8 8.5 43 297-339 239-285 (479)
88 PLN02809 4-hydroxybenzoate non 69.3 26 0.00056 34.5 8.7 30 297-326 58-88 (289)
89 PRK12887 ubiA tocopherol phyty 69.3 36 0.00077 33.8 9.7 25 301-326 70-94 (308)
90 PRK12883 ubiA prenyltransferas 67.7 71 0.0015 30.9 11.3 36 298-334 51-89 (277)
91 PRK12882 ubiA prenyltransferas 67.4 1.1E+02 0.0023 29.6 12.5 39 297-336 51-92 (276)
92 PRK12878 ubiA 4-hydroxybenzoat 66.2 49 0.0011 33.0 10.0 35 158-192 199-234 (314)
93 PRK12895 ubiA prenyltransferas 65.9 45 0.00097 32.9 9.5 36 156-191 164-200 (286)
94 PRK12869 ubiA protoheme IX far 65.3 98 0.0021 30.1 11.8 38 297-334 49-90 (279)
95 PRK11383 hypothetical protein; 65.1 74 0.0016 28.1 9.5 81 226-313 49-132 (145)
96 PRK12873 ubiA prenyltransferas 63.9 47 0.001 32.9 9.3 35 158-192 177-212 (294)
97 PRK05951 ubiA prenyltransferas 63.3 63 0.0014 31.8 10.1 34 162-198 182-216 (296)
98 PRK04375 protoheme IX farnesyl 62.5 1.1E+02 0.0023 30.1 11.6 40 297-336 57-100 (296)
99 PRK13362 protoheme IX farnesyl 59.7 63 0.0014 32.1 9.4 40 297-336 60-103 (306)
100 TIGR01473 cyoE_ctaB protoheme 56.5 84 0.0018 30.5 9.6 40 297-336 48-91 (280)
101 PLN02878 homogentisate phytylt 54.3 64 0.0014 31.8 8.2 25 301-326 40-64 (280)
102 PRK12876 ubiA prenyltransferas 50.7 1.3E+02 0.0029 29.9 9.9 35 159-193 180-215 (300)
103 PRK04214 rbn ribonuclease BN/u 47.8 1.2E+02 0.0026 31.4 9.5 20 159-178 113-132 (412)
104 COG1295 Rbn Ribonuclease BN fa 40.5 2.7E+02 0.0059 27.5 10.4 24 155-178 110-133 (303)
105 PLN02776 prenyltransferase 37.6 4.5E+02 0.0098 26.6 13.1 38 297-334 42-83 (341)
106 COG0818 DgkA Diacylglycerol ki 36.8 2.1E+02 0.0045 24.7 7.6 79 101-189 8-91 (123)
107 PF04341 DUF485: Protein of un 35.2 1.9E+02 0.0041 23.2 6.9 39 144-182 51-89 (91)
108 cd00867 Trans_IPPS Trans-Isopr 26.2 29 0.00063 32.3 0.8 31 296-326 158-198 (236)
109 PF06645 SPC12: Microsomal sig 23.8 2.8E+02 0.0062 21.6 5.9 43 325-367 5-48 (76)
110 PF12270 Cyt_c_ox_IV: Cytochro 23.7 5E+02 0.011 22.8 8.4 54 171-224 60-115 (137)
111 TIGR03750 conj_TIGR03750 conju 21.8 3E+02 0.0066 23.2 6.0 35 178-214 5-39 (111)
112 PRK10299 PhoPQ regulatory prot 20.9 1.3E+02 0.0028 21.4 2.9 22 159-180 13-34 (47)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.2e-56 Score=429.22 Aligned_cols=277 Identities=51% Similarity=0.898 Sum_probs=256.0
Q ss_pred HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHH
Q 015392 132 TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLA 211 (408)
Q Consensus 132 l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~ 211 (408)
+..+++|.+..+++++.++.+++.++++.+|++.+..++|||+|+|+||+|||+||+|||++|+++++.+++.+.++|++
T Consensus 4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~ 83 (280)
T PLN02878 4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG 83 (280)
T ss_pred hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456676666777777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHH
Q 015392 212 IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 291 (408)
Q Consensus 212 l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~ 291 (408)
+++.+|+++++++++.+++++++||.++||+|+||+++++..|+..++++..++|+|.+++++++|++..+++++++.++
T Consensus 84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~ 163 (280)
T PLN02878 84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA 163 (280)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence 99999998888887778899999998889999999999999999888888889999999999999987666667777777
Q ss_pred HHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 015392 292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLL 371 (408)
Q Consensus 292 ~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l 371 (408)
++.++..+++++||++|+|||++.|+||+|+++|++++.+++..++.++|+..++.++.++..+...++..+|++++..+
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L 243 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL 243 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988888888877788889999999999999
Q ss_pred HHHHHHccCCChHhhHHHHHHHHHHHHHHHHHhhhcC
Q 015392 372 WLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408 (408)
Q Consensus 372 ~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~p~~~ 408 (408)
|+|.+++|+++++++++|||||||+||+||+++|+.|
T Consensus 244 ~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 244 WQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.6e-53 Score=419.71 Aligned_cols=304 Identities=33% Similarity=0.566 Sum_probs=257.3
Q ss_pred chhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 015392 101 STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID 179 (408)
Q Consensus 101 ~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D 179 (408)
|++.|++..+.+++|+|++|||+.+++.++++.+.++|.....+ .....+...+.++++..+++.+.+++|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 67788899999999999999999999999999888876432221 12112333445555556666666669999999999
Q ss_pred cCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHH
Q 015392 180 KVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (408)
Q Consensus 180 ~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~ 259 (408)
++|||+||+++|++|+++++.+.+++.++|+.+++.+|++.+.++ +++.+++++|| .||+|+||+|+.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999998776655 46899999999 599999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHH
Q 015392 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (408)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ 339 (408)
|.++.+|.+.+.+... +.....+..+++..+++.+++.+++++||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus 159 g~i~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~ 237 (308)
T PRK12887 159 GVIVNLGLFLHFQWLL-GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA 237 (308)
T ss_pred HHHHHHHHHHHHHHHH-hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence 8888888876544322 323334455666777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHHHHHHHHHHHhhhcC
Q 015392 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 408 (408)
Q Consensus 340 ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~p~~~ 408 (408)
+|+..++.++....++....+.++|++++..+++|.+++|+++++++.+|||||||+||+||+++|+.|
T Consensus 238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888877766666666667799999999999999999999999999999999999999999999976
No 3
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.8e-35 Score=287.78 Aligned_cols=273 Identities=16% Similarity=0.171 Sum_probs=207.4
Q ss_pred cCchhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 015392 99 INSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI 178 (408)
Q Consensus 99 ~~~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~ 178 (408)
.|| +.++..++++++|++++||++.++...+.+.|.++|.+..+ ++. .+++.+++.+++++++|++||++|+|+
T Consensus 3 ~~~-~~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~di 76 (300)
T PRK13106 3 WDP-GGLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIS---TLILIFLALFFLRTAGMTNDNLADLEI 76 (300)
T ss_pred CCc-ccchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 344 23444778999999999999999999989999999865432 332 245677899999999999999999999
Q ss_pred ccCCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHH
Q 015392 179 DKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 256 (408)
Q Consensus 179 D~ink--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~ 256 (408)
|++|+ ++||+|+|++|++|++.+.++..+.++.++.++|+.+..++. +++++...|+. +||++.++|+.++
T Consensus 77 D~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg 149 (300)
T PRK13106 77 DAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLA 149 (300)
T ss_pred ccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHH
Confidence 99995 599999999999999999888788888888888988777665 45556778985 7999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcc-----cchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHH
Q 015392 257 TVFGLVYQFSFFIHFQKYVLGRPV-----VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331 (408)
Q Consensus 257 ~~~g~~~~~G~~~~~~~~v~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~ 331 (408)
...+..+..|+.++ .|... ..+...+++.+...+|+.+++++|+++|+|+|++.|+||+|+++| +++.+
T Consensus 150 ~~~~~~~~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~ 223 (300)
T PRK13106 150 SIQGLAVFSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALT 223 (300)
T ss_pred HHHHHHHHHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHH
Confidence 88877666666442 12211 011122333445567788999999999999999999999999999 88888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHH
Q 015392 332 LCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIW 394 (408)
Q Consensus 332 l~~~ll~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw 394 (408)
++..+..++.....+.+....+++ .|.++..+.+..+.+++..++.+ ++..+.|.++.|
T Consensus 224 ~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ 282 (300)
T PRK13106 224 FAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIY 282 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccH
Confidence 877777666666666655555443 45556667777888999888876 444466655533
No 4
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.4e-35 Score=285.26 Aligned_cols=259 Identities=17% Similarity=0.147 Sum_probs=203.7
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl 188 (408)
++++|+|++||++.+..+..++.|.++|.+... ++. .+++.+++.+++++++|++||+.|+|+|++|+ ++||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 478999999999999999999999999854322 221 24456668899999999999999999999995 59999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (408)
Q Consensus 189 ~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~ 268 (408)
|+|++|++||+.+.+++.++++.+++++|+.++.++. ..+.+...|+. +||++.++++.++...|..+.+|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999998877664 45666666764 7999999999888888866656654
Q ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (408)
Q Consensus 269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~ 348 (408)
++ ++...+....+++.+...+|+.++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.....+.+
T Consensus 150 Av------~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g 223 (286)
T PRK12895 150 AV------IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG 223 (286)
T ss_pred HH------cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence 32 222222222334456667788999999999999999999999999999999998776666655555555545
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhh-HHHHH
Q 015392 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYM 391 (408)
Q Consensus 349 ~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~-~~f~~ 391 (408)
.... ..++.++..+.+..+.+|++.+|.+|.+.| ..||+
T Consensus 224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~ 263 (286)
T PRK12895 224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN 263 (286)
T ss_pred HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4332 345667778888889999999999998888 55554
No 5
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.4e-34 Score=282.51 Aligned_cols=261 Identities=17% Similarity=0.210 Sum_probs=201.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--CCCCcc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPL 188 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~RPl 188 (408)
++++|++++||++.++....+..|.++|.+... ++. .+++++++.+++++++|++||++|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 368999999999999998888889998855332 332 2566788999999999999999999999999 579999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (408)
Q Consensus 189 ~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~ 268 (408)
++|++|+++++.+++++.++++.+++.+|+.+..++. .+.++.+.|+. +||++.++++..+...+..+..|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888888988776654 45666889984 7999999999888776665556654
Q ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (408)
Q Consensus 269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~ 348 (408)
+. .|. .......+...+...+|+.+.+++||++|+|+|+++|+||+|+++|+|++.++...+..+++....+.+
T Consensus 149 a~-----~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 149 AV-----IGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred HH-----hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 122 221122334455566778889999999999999999999999999999998887777777776666555
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHH-HHHH
Q 015392 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMF 392 (408)
Q Consensus 349 ~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~-f~~~ 392 (408)
.....++ .+.++..+.+..++++.+..|.++++.+++ |+..
T Consensus 223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 264 (282)
T TIGR01475 223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA 264 (282)
T ss_pred HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5544443 444555556677788888888888877764 4443
No 6
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=7.4e-34 Score=277.45 Aligned_cols=222 Identities=20% Similarity=0.231 Sum_probs=173.7
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccccc
Q 015392 113 HALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG 191 (408)
Q Consensus 113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG 191 (408)
++|++++||++++..++++++|.++|...... +++. ..++.++++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999888422222 3332 12344677999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHHH
Q 015392 192 DLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 271 (408)
Q Consensus 192 ~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~~ 271 (408)
++|+++++.+.+++..+++.+++.++.+...+..+++++++++|| .||+|+||+++++++.++..++.....+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-- 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-- 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999988877663332346788899999 5899999999999988776554332222211
Q ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 015392 272 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (408)
Q Consensus 272 ~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~ 346 (408)
+.+ .. +...++..+..++++.+++++||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+.
T Consensus 155 ---~~~-~~--~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 155 ---IFA-PL--TWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred ---HhC-CC--CHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 112 12 2233444555666788889999999999999999999999999999999888877777765543
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3.9e-34 Score=280.10 Aligned_cols=265 Identities=16% Similarity=0.143 Sum_probs=198.2
Q ss_pred HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-
Q 015392 108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink- 183 (408)
.++++++|++++||++..++. ++++.|.++|.+..+ ++. .+++++++.+++++++|++||++|+|+|+.|+
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 456889999999999987766 577888888854322 222 24567789999999999999999999998755
Q ss_pred C-CCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 184 P-DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 184 p-~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
+ +||+|+|++|++|++.+++++.++++.+++.+|+.++.+++ .+.++.++||. .||++.++++.++...+..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 3 89999999999999999999999999999999988877765 46677889985 7999988998877777766
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~ 342 (408)
+..|+.+. .|. . +...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.+++.. ..++..
T Consensus 153 ~l~g~~a~-----~g~-~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~ 223 (290)
T PRK12870 153 VLISWSAV-----TGH-L--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVG 223 (290)
T ss_pred HHHHHHHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHH
Confidence 55555432 122 2 22334455666778899999999999999999999999999999998876653 333333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChHhhHHHHH-HHHHH
Q 015392 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYM-FIWKL 396 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~--d~~~~~~~~~f~~-~iw~l 396 (408)
.....+.....++ .+.++..+.+..+.++...+ |.++++.|..||+ +.|-.
T Consensus 224 ~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g 277 (290)
T PRK12870 224 FLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG 277 (290)
T ss_pred HHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence 3334444444333 34455566677788888888 7667777765554 34433
No 8
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-33 Score=275.23 Aligned_cols=266 Identities=19% Similarity=0.182 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC
Q 015392 106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN 182 (408)
Q Consensus 106 ~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~---~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in 182 (408)
+++++++++|+|++||++.+.++..++.|.++|... ...+++. .+++++++.+++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 467889999999999999999999999999887521 1123433 2567778899999999999999999999999
Q ss_pred C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHH
Q 015392 183 K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (408)
Q Consensus 183 k--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g 260 (408)
+ ++||+++|++|+++++.+++++.++++.+++.+|+.+..+++ ..+++...|+. +||++.++++..+...+
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~ 151 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHLVLGLSLG 151 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence 8 599999999999999999999988888888888988777664 56677889995 79999999998887777
Q ss_pred HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (408)
Q Consensus 261 ~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a 340 (408)
..+.+|+.++ ++.. +...+++.+.+.+|+.+.+++++++|+|+|+++|++|+|+++|++++.++......+.
T Consensus 152 ~~~l~G~~av------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~ 223 (291)
T PRK12874 152 LAPIAGVVAV------LGEI--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA 223 (291)
T ss_pred HHHHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence 7666775442 2222 2223344556678888999999999999999999999999999999887655544433
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH
Q 015392 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (408)
Q Consensus 341 y~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~ 392 (408)
.+.....+...... ..+.++..+.+..++++.+..+.++++.++.||..
T Consensus 224 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s 272 (291)
T PRK12874 224 VLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL 272 (291)
T ss_pred HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 33333333322222 23334555556667777777766666677776554
No 9
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=3e-33 Score=281.39 Aligned_cols=222 Identities=21% Similarity=0.291 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCC
Q 015392 107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPK-YFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPD 185 (408)
Q Consensus 107 ~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~-~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~ 185 (408)
...+++++|++++||++++..++++++|.+.. +.. ++.+. +...++.++++..++++++|++|||+|+|+|++|+|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 35678999999999999999999999999853 221 11111 1112356777888999999999999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHhh-------ChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHH
Q 015392 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258 (408)
Q Consensus 186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~l-------g~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~ 258 (408)
||+++|++|+++++.+..++.++++.+++.+ +++.+.+++ ++++++++|| .||+++||++++|++.++..
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYS--APPLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhc--CCchhhhHhccHhHHHHHHH
Confidence 9999999999999997777666666665543 343444443 5777899999 58999999999999877666
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHH
Q 015392 259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 338 (408)
Q Consensus 259 ~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~ 338 (408)
++....++.+. +.|. .+...+++.++.+++++++++.||++|+|+|+++|++|+||++|++++.+++..++.
T Consensus 235 ~~~lp~~~g~a-----~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 235 YISLPWWAGQA-----LFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred HHHHHHHHHHH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 55433322111 2232 223344445566678889999999999999999999999999999999988765444
Q ss_pred HHH
Q 015392 339 FAY 341 (408)
Q Consensus 339 ~ay 341 (408)
+..
T Consensus 307 l~~ 309 (375)
T PLN00012 307 ITQ 309 (375)
T ss_pred HHH
Confidence 443
No 10
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=274.76 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=190.0
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s 190 (408)
++++|++++||+++..++++++.|.++|.+.. .++. .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 46899999999999999999999999885422 2322 246677899999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHH
Q 015392 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (408)
Q Consensus 191 G~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~ 270 (408)
|++|+++++.+++++.++++.+++.+|+.+..+++ ++.++.++||. ++||++.++|++++...|..+..|....
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877765 46777899984 4899999999999988887766665432
Q ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015392 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (408)
Q Consensus 271 ~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~ 350 (408)
+. . ...+++.....+++++++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus 151 ------~~--~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK09573 151 ------FN--V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL 220 (279)
T ss_pred ------cc--c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 1222334444566778899999999999999999999999999999887765554444443322221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChHhhH
Q 015392 351 SSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTY 387 (408)
Q Consensus 351 ~~~~~~~~~~~~~~~ila~~l~~~~-~~~d~~~~~~~~ 387 (408)
. ..+..|.++..++...+.++. +..+.++++.++
T Consensus 221 ~---~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (279)
T PRK09573 221 G---IFGIYYLIVVIICDILFIIAMLILLKNPSIEGAS 255 (279)
T ss_pred H---HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH
Confidence 1 123345555555555556553 334444555444
No 11
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=274.78 Aligned_cols=259 Identities=15% Similarity=0.124 Sum_probs=198.2
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQ-SFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP 187 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~-~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RP 187 (408)
++++|++++||++.+.+...++.|.+.+.. ....+++. .+++..++.+++++++|++||++|+|+|++|+ ++||
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 368999999999988877776666666531 11123332 24567889999999999999999999999998 5999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHH
Q 015392 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (408)
Q Consensus 188 l~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~ 267 (408)
+|+|++|+++++.+.+.+.++++.++..+|+.++.++. ++++....|+. .||++.++++..+...+..+..|+
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~ 150 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW 150 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888988777654 45566778985 799999999988777665555554
Q ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (408)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~ 347 (408)
.++ .|. . +...+++.+...+|+.+.+++|+++|+|+|++.|+||+|+++|++++.++...+..+.++...+.
T Consensus 151 ~a~-----~g~-~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~ 222 (284)
T PRK12888 151 IAV-----TGT-W--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF 222 (284)
T ss_pred HHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence 332 122 2 22344555667788889999999999999999999999999999999887766666666555555
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhH-HHH
Q 015392 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY 390 (408)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~-~f~ 390 (408)
+.....++ ++.++..+.+..+.+|++.+|.+|.+.|. .||
T Consensus 223 ~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 223 GLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 55544443 44456667778889999999998877764 665
No 12
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2.9e-33 Score=276.86 Aligned_cols=226 Identities=21% Similarity=0.256 Sum_probs=176.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHH-HHHHHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME-FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~-~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R 186 (408)
.++++++|++++||++++.++++.+.|.+.+.. .++....... ++.++++..++++++|++|||+|+|+|++|+|+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 467889999999999999999888888876532 1222111111 2445677888999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHH
Q 015392 187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS 266 (408)
Q Consensus 187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G 266 (408)
|+++|++|+++++.+++++.++++.+++.+|++.+.+++ ++++++++|| .||+++||+++++++.+++.++....++
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987776654 5777899999 5899999999999998887765543322
Q ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 015392 267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344 (408)
Q Consensus 267 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~ 344 (408)
... ..+. ...+...++..++..++..+++++||++|+|+|+++|+||+|+++|++++.+++..++.++|+..
T Consensus 178 g~~-----~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 178 GAA-----AFGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHH-----Hhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 111 1121 11222334445555667788899999999999999999999999999999998877777776654
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-33 Score=272.17 Aligned_cols=256 Identities=19% Similarity=0.290 Sum_probs=193.7
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccc
Q 015392 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~ 189 (408)
+++++|++++||++++.+.++++.|.++|.+..+ +. .+++++++.+++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 5789999999999999999999999999864322 11 24567789999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHH
Q 015392 190 SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 269 (408)
Q Consensus 190 sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~ 269 (408)
+|++|+++++.+++++.++++++++.+|+..+.+++ ++.++++.||. ++||++++++++++...+..+..|...
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989988777654 57788999995 489999889998887776555555432
Q ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 015392 270 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 349 (408)
Q Consensus 270 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~ 349 (408)
.+... ...+.+.....++..+.++.+|++|+|+|+++|+||+|+++|++++.++...+..+.++...+...
T Consensus 150 ------~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 150 ------VGELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred ------hCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12211 133444455566777889999999999999999999999999999998877776666655444333
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChHhhHHH
Q 015392 350 SSSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSF 389 (408)
Q Consensus 350 ~~~~~~~~~~~~~~~~ila~~l~~~~-~~~d~~~~~~~~~f 389 (408)
....++ .+.+...+....+.++. +..+.+|++.++.+
T Consensus 221 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 221 FGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 333333 33344444444555554 44555555555544
No 14
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=274.54 Aligned_cols=259 Identities=21% Similarity=0.245 Sum_probs=188.5
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s 190 (408)
++++|++++||++...++++.+.|.++|.+..++ .. ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 4789999999999999999999999998543221 11 145678899999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHH
Q 015392 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (408)
Q Consensus 191 G~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~ 270 (408)
|++|+++++.+++++.++++++++.+|+.++.+++ ++.++.++||. |+||++.++|+.++...|..+.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999987777654 46667889985 589999999998877666554444322
Q ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015392 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (408)
Q Consensus 271 ~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~ 350 (408)
.+... ....+.+.+..+++..+++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus 151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~ 223 (276)
T PRK12882 151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL 223 (276)
T ss_pred -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111 11222333444456778999999999999999999999999999999887666654444333221112
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHHHHHHccCCChHhhHHHHH
Q 015392 351 SSFQLVKLVSIIGHSTLA-FLLWLRAQTVDLSNNASTYSFYM 391 (408)
Q Consensus 351 ~~~~~~~~~~~~~~~ila-~~l~~~~~~~d~~~~~~~~~f~~ 391 (408)
...+ ..+.+...+.. ..+....+..|.++++.++++|+
T Consensus 224 ~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 262 (276)
T PRK12882 224 STFG---LWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLK 262 (276)
T ss_pred HHhh---HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 23333333333 33334556667777666655433
No 15
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.1e-33 Score=271.71 Aligned_cols=266 Identities=19% Similarity=0.160 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~ 185 (408)
..+++++|+|++||++......+++.|.++|.+..++ +. .++++.++.+++++++|++|||+|+|+|++|+ ++
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 4577899999999999999988899999998543332 21 24567789999999999999999999999998 58
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHH
Q 015392 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (408)
Q Consensus 186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~ 265 (408)
||+++|++|++++..+.+.+.+.++.+++.+|+++..+++ ++.++...|+. .||++.++++..+...+..+..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999998777777777777788988877765 36666889995 7999999998777665655445
Q ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 015392 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 345 (408)
Q Consensus 266 G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~ 345 (408)
|+++. .| .. +...+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.+...+
T Consensus 152 g~~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 152 AWIAI-----RG-TI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred HHHHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 54331 12 22 223344455566778888999999999999999999999999999998877666666665555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC-hHhhHH-HHHHHHHH
Q 015392 346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYS-FYMFIWKL 396 (408)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~-~~~~~~-f~~~iw~l 396 (408)
+.+.....++ ++.++..+....+.++.+..+.+| ++.++. |..++|-.
T Consensus 224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~ 273 (291)
T PRK12886 224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS 273 (291)
T ss_pred HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence 5554444333 344455555556667777777766 345555 44444433
No 16
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=6.1e-33 Score=271.18 Aligned_cols=262 Identities=22% Similarity=0.141 Sum_probs=196.3
Q ss_pred HHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--
Q 015392 109 LKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (408)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-- 183 (408)
++++++|+|++|.++..++.+.. ..|..++.......++. .+++..++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 46889999999999987775544 45555553111112222 14567789999999999999999999999875
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (408)
Q Consensus 184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~ 263 (408)
|+||+|+|++|+++++.+.+++.++++.+++.+|..++.+++ +++++.+.||. +||++.++++..+...+..+
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 152 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA 152 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence 599999999999999999999999999999989987777765 56777889985 89999999987776666555
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (408)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~ 343 (408)
.+|+.+ +.|.. .. ...+.+.....+|+.+.+++++++|+|+|++.|+||+|+++|++...+++. +..+++..
T Consensus 153 l~g~~a-----v~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~ 224 (289)
T PLN02809 153 LLGWAA-----VKGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGG 224 (289)
T ss_pred HHHHHH-----HhCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHH
Confidence 555532 22322 11 222224455566788899999999999999999999999999997766653 44555555
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHH
Q 015392 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (408)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~ 391 (408)
....+.....++ .+.+++.+.+..+++|++.+|.+|+++|.++|+
T Consensus 225 l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 225 LALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 545555444432 344577778888999999999999988866554
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1.6e-32 Score=272.51 Aligned_cols=255 Identities=18% Similarity=0.282 Sum_probs=179.6
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccC-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~-~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R 186 (408)
+.+++|+|++++||++++ ..++.++|.++|.+.. ++.....+ .+...++...+..+++|++|||+|+|+|++|+|.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 567899999999999888 5666777777775321 22221111 12223334455667889999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHhhCh-------hHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHH
Q 015392 187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (408)
Q Consensus 187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~-------~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~ 259 (408)
|+++|++|+++++.+.+++.++++.+++.++. +.+++..+++++++++|| .||+++||+++.++..++..+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHH
Confidence 99999999999999999999988887776542 222332346788999999 489999999988888777666
Q ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHH
Q 015392 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (408)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ 339 (408)
+....++... ..+. .+...++..+...+++.+++++||++|+|+|++.|+||+|+++|++++.+++.....+
T Consensus 164 ~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 164 GFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 6544333221 2232 2233444555667788899999999999999999999999999999998887666545
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015392 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQT 377 (408)
Q Consensus 340 ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~ 377 (408)
..+..+..+.....++. +....++++..+++|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l 270 (331)
T PRK12392 236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQL 270 (331)
T ss_pred HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHH
Confidence 55555555555444432 223334444445555543
No 18
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=267.34 Aligned_cols=285 Identities=16% Similarity=0.154 Sum_probs=202.3
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcc---cCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--
Q 015392 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQ---SFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~---~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-- 183 (408)
++++.|.++.|.++.+.++--+..|.++|.. .... +++.-+..+++..++.+++++++|++||+.|+|+|++|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT 81 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT 81 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence 4689999999998877777777888888841 0011 001112235678889999999999999999999999999
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (408)
Q Consensus 184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~ 263 (408)
++||+|+|++|+++|+.+.+++.++++++++++|+.++.+++ +++++.+.||. +||+++++++..+...+..+
T Consensus 82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~ 154 (300)
T PRK12876 82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYLAI 154 (300)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHHHH
Confidence 499999999999999999988888888888999998888775 46666789985 89999999988777766655
Q ss_pred HHHHHHHHHHHhhcCcccchH--HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHH
Q 015392 264 QFSFFIHFQKYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 341 (408)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay 341 (408)
..|+.++ .+++..+.. ..++..+...++..++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.
T Consensus 155 l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~ 229 (300)
T PRK12876 155 LMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASA 229 (300)
T ss_pred HHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHH
Confidence 5555432 233221100 112233444556778999999999999999999999999999988777666666665
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHccCCChHhhHHHHHH---HHHHHHHHHHHhhhcC
Q 015392 342 GVSVIVGASSSFQLVKLVSIIGHSTLA--FLLWLRAQTVDLSNNASTYSFYMF---IWKLFYAEYLLIHFLR 408 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~ila--~~l~~~~~~~d~~~~~~~~~f~~~---iw~l~~~~y~~~p~~~ 408 (408)
+..++.+.....++. .+..+..+.+ ..+.++.+.+|.++++.|..||+. +=-++++.++..+.+|
T Consensus 230 ~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~ 299 (300)
T PRK12876 230 IAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLLR 299 (300)
T ss_pred HHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence 555555655555442 2333333222 223455566777777778777665 4344556666666654
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.1e-32 Score=267.42 Aligned_cols=266 Identities=18% Similarity=0.187 Sum_probs=194.6
Q ss_pred HHHHHHHHHhhhccchHHH---HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-
Q 015392 108 LLKKLHALYVFTRPFAMIG---TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~---~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink- 183 (408)
+++++++|++++||+++.+ ..++++.|.++|.... ..++. ..++++++.+++++++|++|||+|+|+|++|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 4567999999999998765 4567788888885432 13332 24677889999999999999999999999766
Q ss_pred -CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 184 -p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
++||+++|++|+++++.+++++.++++.+++.+|+.++.+++ ++.++++.||. .||++.++++..+...+..
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 489999999999999999999999999999889988777765 56777999985 7999988998777666654
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~ 342 (408)
+..|+.+. ++.. +...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus 152 ~l~~~~a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 152 ILMAFAAV------QNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 44444332 2222 233444555667788899999999999999999999999999999998877766555554
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHH-HHHHHHHH
Q 015392 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIWKL 396 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~-f~~~iw~l 396 (408)
..++ +....... ..+ ++.++....++++...+|.+|++.++. |....+.+
T Consensus 224 ~~~~-~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 274 (285)
T PRK12847 224 WLIL-GIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVG 274 (285)
T ss_pred HHHH-HHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHH
Confidence 4333 33222211 112 233334456777777888877666554 44344433
No 20
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-32 Score=267.94 Aligned_cols=263 Identities=19% Similarity=0.189 Sum_probs=193.6
Q ss_pred HHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--
Q 015392 109 LKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (408)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-- 183 (408)
++++++|++++|++++.... ++++.|.++|.+..++ +. .+++++++.+++++++|++||++|+|+|++|+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 35789999999987765544 4567788887543222 22 14566778899999999999999999999765
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (408)
Q Consensus 184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~ 263 (408)
++||+|+|++|++++..+++++.++++.+++.+|+.+..+++ .+.++.+.|+. .||++.++++..+...+..+
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 489999999999999999999999999999989988777664 46667889974 79999889987777777666
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (408)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~ 343 (408)
.+|+.+. ++.. +...+++.+...+|....++.++++|+|+|+++|+||+|+++|++++.++.... .+....
T Consensus 150 ~~g~~a~------~~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~-~~~~~~ 220 (282)
T PRK12848 150 PMAFAAV------QGSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQ-LATLAL 220 (282)
T ss_pred HHHHHHH------hCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHH-HHHHHH
Confidence 5665432 2222 223344455667778889999999999999999999999999999887765333 333333
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHH-HHHHHHH
Q 015392 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIWK 395 (408)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~-f~~~iw~ 395 (408)
..+.+.....+ ..+.++..+....+.++...+|.++++.|.+ |+++.|.
T Consensus 221 ~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~ 270 (282)
T PRK12848 221 LAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWV 270 (282)
T ss_pred HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHH
Confidence 33333333332 3455566677778888998888888777754 4444443
No 21
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=3e-32 Score=266.89 Aligned_cols=274 Identities=23% Similarity=0.298 Sum_probs=207.4
Q ss_pred HHHHHHHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC
Q 015392 108 LLKKLHALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP 184 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp 184 (408)
.+++++.+.+++|+++++.+ ..+..+|..++....++ +...++++++++++++++|++||++|+|+||+|+|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 44555666666666555554 44556666666532222 23467788899999999999999999999999998
Q ss_pred --CCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 185 --DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 185 --~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
+||+|+|++|+++++.+.+++.++++.+++.+|++++.+.+ ++.++.+.|. ++||.+.+++++++..++..
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~ 153 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYP------FLKRFTFLPQLVLGLAFGLG 153 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH------HhhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876654 6888999995 38999999999999888877
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~ 342 (408)
+..|+.+. ++. .....+++.++..+++++++++||++|+|+|++.|+||+|+.+|++++.+++.... ...+
T Consensus 154 ~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~ 224 (289)
T COG0382 154 ALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA 224 (289)
T ss_pred HHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence 77776542 221 12345566777788899999999999999999999999999999999998877666 3333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHHHHHHHHHHHh
Q 015392 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI 404 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~ 404 (408)
....++...... ...+..++.+.+..+.++...+|.++++.+..++..-..+-...++..
T Consensus 225 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T COG0382 225 LLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL 284 (289)
T ss_pred HHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333222 135666777777788888888888777788777766555544444443
No 22
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.8e-32 Score=265.62 Aligned_cols=268 Identities=16% Similarity=0.250 Sum_probs=198.3
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-----C
Q 015392 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----P 184 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-----p 184 (408)
.+++.|++.+||++++.++.++++|.++|.....++++.. .++++++.+++++++|.+|||+|.|.|..|+ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 3688999999999999999999999999965434667643 5677889999999999999999966655554 7
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHH----HhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHH
Q 015392 185 DLPLASGDLSMGTGLAITLTLSLTSLAIA----LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (408)
Q Consensus 185 ~RPl~sG~iS~~~a~~~~~~~~~l~l~l~----~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g 260 (408)
+||+++|++|++++..+.+++..+++.++ +..+++.+.++ ++++++++.|| .||+++|+++ +|++.++..+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt--~~P~~lky~g-lGe~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYM--GPPFFLKYRW-LGEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHc--CCCcccCCCC-chHHHHHHHHH
Confidence 89999999999999998888766665443 33465555555 46889999999 5899999886 48988888888
Q ss_pred HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (408)
Q Consensus 261 ~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a 340 (408)
..+++|.+.+. ++.. +...+...+.+++++....+.||++|+|+|++.|+||+|+++|++++ ++...+...+
T Consensus 155 ~~~vlg~~~~~-----~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~ 226 (296)
T PRK05951 155 HMLVMGLIYVW-----LGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP 226 (296)
T ss_pred HHHHHHHHHHH-----hCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence 87777765431 2222 22334445566667778889999999999999999999999999999 6666666777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH
Q 015392 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (408)
Q Consensus 341 y~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~ 392 (408)
|+..+........++..+++.+++......+.++.+..|.++.+.+...+..
T Consensus 227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 7766655555445555555666655555445555555565555555454443
No 23
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7.2e-32 Score=266.62 Aligned_cols=266 Identities=16% Similarity=0.140 Sum_probs=196.0
Q ss_pred hHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 015392 105 WDVLLKKLHALYVFT---RPFAMIGTIVGITSIAILPLQSF---ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI 178 (408)
Q Consensus 105 ~~~~~~~l~~y~~l~---Rp~~~~~~~l~~l~g~~lA~~~~---~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~ 178 (408)
.+.+++++++|++++ ||+......++++.|.++|.... ...++. .+++++++.+++++++|++|||+|+|+
T Consensus 23 ~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~i 99 (314)
T PRK12878 23 DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDI 99 (314)
T ss_pred hhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344778999999999 88888888999999999985421 123322 256778899999999999999999999
Q ss_pred ccCCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHH
Q 015392 179 DKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 256 (408)
Q Consensus 179 D~ink--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~ 256 (408)
|+.|+ ++||+++|++|+++++.+.+++.++++.+.+..|++++.+++ +++++.+.|+. .||++.+++...+
T Consensus 100 D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~G 172 (314)
T PRK12878 100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQFFLG 172 (314)
T ss_pred ccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchHHHH
Confidence 98776 489999999999999999999999999998888988777765 57777999985 7998888887666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392 257 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 257 ~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
...+....+|+++. .| ... ...+.+.+...+|+...+.+++++|+|+|+++|+||+|+++|++++.++....
T Consensus 173 l~~~~~~l~g~~a~-----~g-~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~ 244 (314)
T PRK12878 173 LAFSWGALMGWAAH-----FG-SLS--LAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFY 244 (314)
T ss_pred HHHHHHHHHHHHHH-----hC-CCc--hHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHH
Confidence 55555444564432 12 222 22334444556678888999999999999999999999999999998876444
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH
Q 015392 337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392 (408)
Q Consensus 337 l~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~ 392 (408)
.... ....+.+.....++. +.++...+...+.++..++|.++++.|+++|+.
T Consensus 245 ~~~~-~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 296 (314)
T PRK12878 245 GLAV-LLMGLAFWLAGVPLL---ALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS 296 (314)
T ss_pred HHHH-HHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence 3333 333333333333433 333444445557788888887777766655543
No 24
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=5.5e-32 Score=266.90 Aligned_cols=225 Identities=21% Similarity=0.295 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhccccccccCCC
Q 015392 107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK 183 (408)
Q Consensus 107 ~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink 183 (408)
...+++++|++++||++++..+++++.|...+. . +++.. ...++.++++..++++++|.+|||+|+|+|+.|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~-~---~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG-N---FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC-C---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 356778999999999999999999999988642 2 22211 1113445678899999999999999999999999
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhC-------hhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHH
Q 015392 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 256 (408)
Q Consensus 184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg-------~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~ 256 (408)
|+||+++|++|+++++.+++.+.++++.+++.+. ++.+.++ +++++++++|| .||+++||++++|++.++
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYS--APPLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHc--CChhhhhhcccHHHHHHH
Confidence 9999999999999999999888888887776543 3444444 36788899999 589999999988998877
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392 257 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 257 ~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
...+..+..+.+. +.| . .+...++..+..++++.++++.||++|+|+|++.|+||+|+++|++++.+++..+
T Consensus 164 ~~~~~~~~~~~~a-----~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l 235 (306)
T TIGR02056 164 ASYIALPWWAGHA-----LFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence 6665444433221 122 2 2233444555666788899999999999999999999999999999999988877
Q ss_pred HHHHHHHHHH
Q 015392 337 LFFAYGVSVI 346 (408)
Q Consensus 337 l~~ay~~~~~ 346 (408)
+..++...+.
T Consensus 236 ~~~~~~~~~~ 245 (306)
T TIGR02056 236 IDIFQGLIAA 245 (306)
T ss_pred HHHHHHHHHH
Confidence 7666655433
No 25
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=261.62 Aligned_cols=266 Identities=15% Similarity=0.101 Sum_probs=197.0
Q ss_pred HHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC--
Q 015392 110 KKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP-- 184 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp-- 184 (408)
+++++|++++||+.+.++.+ +.+.|.+++....+ ++. .+++++++..++++++|++||+.|+|+|+.|+|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 46889999999988777654 44667666643222 222 256778899999999999999999999998874
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHhh----ChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHH
Q 015392 185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (408)
Q Consensus 185 ~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~l----g~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g 260 (408)
+||+++|++|+++|+.+++++.++++.+.+.+ |+.++.+++ +++++...||. +||++.++++..+...+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence 99999999999999999999999998887665 556666654 46667889995 79999999988777666
Q ss_pred HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (408)
Q Consensus 261 ~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a 340 (408)
..+.+|+.++ .|. ..+....+++.+.+.+|+.+.+++++++|+|+|+++|++|+|+++|++.. .....+..++
T Consensus 153 ~~~l~gw~Av-----~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~~ 225 (294)
T PRK12873 153 FAVLIPWAAA-----EGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFLT 225 (294)
T ss_pred hHHHHHHHHH-----hCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHHH
Confidence 6665665432 232 22222334444566788899999999999999999999999999997544 4455555555
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hHhh-HHHHHHHHHHH
Q 015392 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NAST-YSFYMFIWKLF 397 (408)
Q Consensus 341 y~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~ 397 (408)
.+....++.....++ +|.++..+.+..+.+++..+|.++ +++| +.|..+.|-.+
T Consensus 226 ~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~ 282 (294)
T PRK12873 226 SIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGS 282 (294)
T ss_pred HHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHH
Confidence 555555666555543 455666677788889999998876 3666 56666666554
No 26
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=3.7e-31 Score=258.18 Aligned_cols=257 Identities=17% Similarity=0.185 Sum_probs=185.3
Q ss_pred HHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCc
Q 015392 113 HALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP 187 (408)
Q Consensus 113 ~~y~~l~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RP 187 (408)
++|.|++|++.+... .++.+.|..+|....+..++. .+++.+++.+++++++|++|||+|+|+|+.|+ |+||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 568888888776554 556677888874311111222 14566778899999999999999999999765 4899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHH
Q 015392 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (408)
Q Consensus 188 l~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~ 267 (408)
+|+|++|+++++.+++++.++++.+++.+|+.+..+++ +++++.+.||. .||++.++++..+...+....+|+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877765 57778999995 899999999887766666555665
Q ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (408)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~ 347 (408)
++. .| .. +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+... +..++.....+.
T Consensus 152 ~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~ 222 (281)
T TIGR01474 152 AAV-----TG-DL--STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLLALA 222 (281)
T ss_pred HHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHHHHH
Confidence 432 23 22 2233334455567788899999999999999999999999999988755433 333333333333
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHH
Q 015392 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (408)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~ 391 (408)
+.....+ .++.++..+.+..+.++...+|.+|++.++++|+
T Consensus 223 ~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 263 (281)
T TIGR01474 223 GLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPENCLKLFK 263 (281)
T ss_pred HHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3333333 2444555666777788888888777766665544
No 27
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=3.1e-31 Score=257.09 Aligned_cols=266 Identities=20% Similarity=0.190 Sum_probs=188.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCc
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 187 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RP 187 (408)
....++.+++++||.+|+.++.++.+|...+... .+..+.. +++++...+..|.+.|++|||+|+|+|++|+|+||
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 4567788999999999999999999999877432 2221132 45666788899999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHH----HHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392 188 LASGDLSMGTGLAITLTLSL----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (408)
Q Consensus 188 l~sG~iS~~~a~~~~~~~~~----l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~ 263 (408)
+++|++|++++..+...+.+ +++.+++..|++.+.+.+ ++.+++++|| .||+|+|++|++++++.. ..+.
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~-- 157 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYS--LPPLRFKARPFLDGLSNA-AYAL-- 157 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--cCccchhcCcchhHHHHH-HHHH--
Confidence 99999999999886554443 356677788887766654 6789999999 699999999999988763 3333
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (408)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~ 343 (408)
++++.. .+.|... .... .....+|.++++++++++|+|+||+.|+||+|+++|+|++.+++..++.++.+.
T Consensus 158 p~~~~~----~~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~ 228 (292)
T PRK13595 158 PLALPA----LALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL 228 (292)
T ss_pred HHHHHH----HHcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence 222211 1223221 1111 234456678999999999999999999999999999999999987776555433
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHHHHHHHHHHHH
Q 015392 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL 402 (408)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~ 402 (408)
... . +.+.. +. ..+.......+-+ .|.+..++-+.|..|+|-.+...++
T Consensus 229 ~~~---~-~~~~~--~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 277 (292)
T PRK13595 229 LWP---V-SRLTA--LA---LWLICGGMALALW-RRPTPETAHRLYPLSIVTPWIVGTV 277 (292)
T ss_pred HHH---h-cchHH--HH---HHHHHHHHHHHHh-cCCCHHHHhccchHHHHHhHHHHHH
Confidence 221 1 11111 11 1222222222322 5766677788999999988766554
No 28
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.3e-30 Score=254.02 Aligned_cols=265 Identities=14% Similarity=0.131 Sum_probs=181.5
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl 188 (408)
++++|++++||++.....++++.|.++|.+.. .++. .+++.+++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 46899999999999999999999999985432 2332 24567778899999999999999999999987 69999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHH
Q 015392 189 ASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (408)
Q Consensus 189 ~sG~iS~~~a~~~~~~~~~l~l~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~ 267 (408)
|+|++|++++..+++++.++++.+++. +|+.+.....+..+++.+.||. ++||+++. +..+++..|...++|-
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877 8876544333445678889995 38999985 5566666665555443
Q ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (408)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~ 347 (408)
+... .+.. +...+++.+.+.+|..+.....+++|+|+|+++|+||+|+++|++++.+....+..+........
T Consensus 150 ~~a~-----~g~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12869 150 YASG-----TGSL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLL 222 (279)
T ss_pred HHHH-----hCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 2222 22334444455556666555567889999999999999999999998876655543333333222
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccCCChHhh-HHHHHHHHHHH
Q 015392 348 GASSSFQLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNAST-YSFYMFIWKLF 397 (408)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~ila~-~l~~~~~~~d~~~~~~~-~~f~~~iw~l~ 397 (408)
+. ...+ .++.++..+... .+..+.+.++.++++.+ +.|...+|.+.
T Consensus 223 ~~-~~~g---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~ 270 (279)
T PRK12869 223 YL-YYIG---LIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA 270 (279)
T ss_pred HH-hhcc---HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 22 2223 344444333333 34444455554444433 44544455543
No 29
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=2e-30 Score=254.80 Aligned_cols=267 Identities=15% Similarity=0.100 Sum_probs=185.6
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~ 185 (408)
.+.++++|++++||++++...+++++|.++|.+. ..++. .+++++++.+++++++|++|||+|+|+|++|+ |+
T Consensus 6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence 3467999999999999999999999999998543 23332 24567889999999999999999999999987 69
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHH-HH
Q 015392 186 LPLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL-VY 263 (408)
Q Consensus 186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~-~~ 263 (408)
||+++|++|+++++.+++++.++++.+++. .|+.+..++++..+.+.+.||. ++||++. ++..+++..+. .+
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~ 154 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPP 154 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHH
Confidence 999999999999999999999999988754 5766665544322335678985 4899996 56666655553 33
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (408)
Q Consensus 264 ~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~ 343 (408)
.+|+++. .+.. +...+++.+...+|....+..++++|+|||+++|+||+|+++|++++.+.......+....
T Consensus 155 l~g~~a~------~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~ 226 (296)
T PRK04375 155 LIGWAAV------TGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV 226 (296)
T ss_pred HHHHHHh------CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH
Confidence 3554331 2222 2333445556677777888888899999999999999999999998887655444333333
Q ss_pred HHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHccCCChHhh-HHHHHHHHHH
Q 015392 344 SVIVGASSSFQLVKLVSII-GHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWKL 396 (408)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~-~~~ila~~l~~~~~~~d~~~~~~~-~~f~~~iw~l 396 (408)
.++.......++ .+.+ +..+.+..+.++.+..+.++++.+ +.|+...|.+
T Consensus 227 ~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 227 SLLPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 332222222232 2333 223334445555666666555544 5555555544
No 30
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1.3e-30 Score=253.83 Aligned_cols=205 Identities=24% Similarity=0.324 Sum_probs=162.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccc
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s 190 (408)
.+++|++++||+++....++.+.|.+++.+..++ +. ..++++++.++.++++|++||++|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3678999999999999999999999888543322 11 134566788889999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHH
Q 015392 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (408)
Q Consensus 191 G~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~ 270 (408)
|++|+++++.++.++.++|+.+++.+|++++.+++ .+.+++++|+. ++|+.+.++|+.++...|..+..|....
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~ 150 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV 150 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988877665 46778999995 4799888899998887776555554321
Q ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 271 ~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
+. ..+ ..+. ..+..++..++++.||++|+|+|+++|+||+|+++|++++.++....
T Consensus 151 ------~~-~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 151 ------GR-IGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred ------cc-ccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 21 111 1111 12233445678889999999999999999999999999998765444
No 31
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.98 E-value=5.8e-30 Score=251.08 Aligned_cols=231 Identities=18% Similarity=0.184 Sum_probs=180.6
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccc--CCCCCC
Q 015392 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDK--VNKPDL 186 (408)
Q Consensus 111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~--inkp~R 186 (408)
.+++|++++||+++..+++++++|.++|... ..+++. ..++++++.+++++++|.+|||+|+ ++|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3678999999999999999999999998432 345543 2567788999999999999999999 4675 456899
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHh----hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 187 PLASGDLSMGTGLAITLTLSLTSLAIALS----LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~----lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
|+++|++|+++++.++..+.+++++++.. .+++.+.+++ ++++++++|| .||.|+|++++ ||+.++..+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHH
Confidence 99999999999998888777766555443 4665555543 5788899999 58888888874 898888777776
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~ 342 (408)
...|.+.. ..+. .+...++..++..+++.++++.||++|+|+|++.|+||+|+++|++++.+++..+..++|+
T Consensus 154 ~~~~~~~~-----~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 154 IVLGTYYL-----QAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 66554332 1121 2334555666777888889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhH
Q 015392 343 VSVIVGASSSFQLV 356 (408)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (408)
..+...+....++.
T Consensus 227 ~~~~~~~~~~~~~~ 240 (293)
T PRK06080 227 CIVLLALLGLASPW 240 (293)
T ss_pred HHHHHHHHhhhhHH
Confidence 77766655545554
No 32
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.98 E-value=6e-30 Score=253.27 Aligned_cols=238 Identities=12% Similarity=0.092 Sum_probs=183.8
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC----CCCc
Q 015392 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLP 187 (408)
Q Consensus 112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink----p~RP 187 (408)
++.|++++||++...+++++++|.++|.....++++.. .++++++++++++++|.+|||+|.+.|..++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 67899999999999999999999999964444566642 5677788899999999999999998766654 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHH----HHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHH
Q 015392 188 LASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (408)
Q Consensus 188 l~sG~iS~~~a~~~~~~~~~l~l~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~ 263 (408)
+++|.+|+|++...++.+.+++++ +.+..|+..+.+++ ++++.++.|| .||+++||++ +|++.++..+|+.+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988877776666 55667876666654 6999999999 5899999999 68999888888877
Q ss_pred HHHHHHHHHHHhhcCc--------cc--chH----HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhH
Q 015392 264 QFSFFIHFQKYVLGRP--------VV--ITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV 329 (408)
Q Consensus 264 ~~G~~~~~~~~v~g~~--------~~--~~~----~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a 329 (408)
..|.+.. ++...+.. .. ++. ..++..+.+++....+++.||++|+|+|+++|+||+|+++|+|++
T Consensus 156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a 234 (317)
T PRK13387 156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG 234 (317)
T ss_pred HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence 6665443 21100000 00 000 011244555666777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 015392 330 LRLCVYALFFAYGVSVIVGASSSFQLVK 357 (408)
Q Consensus 330 ~~l~~~ll~~ay~~~~~~~~~~~~~~~~ 357 (408)
.++...++.++|+..+........++..
T Consensus 235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~ 262 (317)
T PRK13387 235 VVLFAILFYASYLAIAVIVLMGYISPWA 262 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999998776665554455543
No 33
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.97 E-value=2.2e-29 Score=245.57 Aligned_cols=264 Identities=17% Similarity=0.125 Sum_probs=179.3
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcccc
Q 015392 113 HALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS 190 (408)
Q Consensus 113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~s 190 (408)
|+|++++||+++....++++.|.++|.+.. +.++. .+++++++.+++++++|++|||+|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999999985432 23432 24667789999999999999999999999976 6999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHH-HheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392 191 GDLSMGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (408)
Q Consensus 191 G~iS~~~a~~~~~~~~~l~l~l-~~~lg~~~l~~~l~~~~~-l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~ 268 (408)
|++|++++..+++++.++|+.+ .+.+|+....+++ ++.+ .+++||.. +||++..++ .+++..|...+++.+
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~~-----lKr~~~~~~-~v~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTIW-----LKRRTPQNT-VIGGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcChh-----hccCCchhH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999884 4558877666654 3444 48899942 799988744 455555554443322
Q ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (408)
Q Consensus 269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~ 348 (408)
.. .++... ...+++.+.+.+|........+++|+|+|+++|+||+|+++|++++.+..............+.+
T Consensus 150 ~a-----~~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 150 AA-----VTGSIS--LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred HH-----hcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122222 22333444555566665556678999999999999999999999887765544433333333333
Q ss_pred HhhhhhhHHHHHH-HHHHHHHHHHHHHHHHccCC-ChH-hhHHHHHHHHHHH
Q 015392 349 ASSSFQLVKLVSI-IGHSTLAFLLWLRAQTVDLS-NNA-STYSFYMFIWKLF 397 (408)
Q Consensus 349 ~~~~~~~~~~~~~-~~~~ila~~l~~~~~~~d~~-~~~-~~~~f~~~iw~l~ 397 (408)
.....++ .|. .+..+.+..+.++.+..+.+ |++ +.+.|+...+.+.
T Consensus 223 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~ 271 (280)
T TIGR01473 223 FLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA 271 (280)
T ss_pred HHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3323333 333 33344445556666666655 444 3345554444443
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=6.1e-29 Score=244.85 Aligned_cols=209 Identities=14% Similarity=0.153 Sum_probs=161.2
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~ 185 (408)
.+.++++|++++||+.+....++++.|.++|... +.++.. ++.++++..+.++++|++|||+|+|+|+.++ ++
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4567899999999999999999999999998432 234321 4556678999999999999999999999765 48
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH
Q 015392 186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264 (408)
Q Consensus 186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~ 264 (408)
||+++|++|+++++.+++++.++|+.++ ++.|+....++.+..+++.++||. ++||++..+++..+...+..+.
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998865 456776665544334446779984 3899999988866555455554
Q ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHH
Q 015392 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV 334 (408)
Q Consensus 265 ~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~ 334 (408)
+|+.+. ++.. +...+++..++.+|+...+...+++|.|||+++|+||+|+++|++++.+...
T Consensus 159 ~G~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 159 VGYCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence 665432 2222 2234455666777788888888999999999999999999999998876433
No 35
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=8.3e-28 Score=236.25 Aligned_cols=234 Identities=17% Similarity=0.128 Sum_probs=182.8
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccCCCCCC
Q 015392 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL 186 (408)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~R 186 (408)
.++++.|++.+||+++..+++++++|.++|.....++++.. .++++++.+++|+++|.+|||+|.+ .|+. ++.
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 46688899999999999999999999999965444677653 5678889999999999999999987 6774 222
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHH----HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 187 PLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 187 Pl~sG~iS~~~a~~~~~~~~~l~l~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
...++..+++++...++.+.++++.+ .+..|++.+.++ +++++++++|| .||+++|++++ |++.++..+|+.
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHH
Confidence 34455557888888777766665544 445576555555 46899999999 59999999995 899999888888
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~ 342 (408)
...|.+.+ + .+ .++...+...+.+++.+.++.+.||++|+|+|++.|+||+|+++|++++.+++..+...+|+
T Consensus 160 ~v~g~~yv-~----t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 160 AVAAALYS-Q----TP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred HHHHHHHH-h----cC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence 77776553 2 22 23334455566677778888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhHHH
Q 015392 343 VSVIVGASSSFQLVKL 358 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~ 358 (408)
..+........+++.+
T Consensus 233 ~~i~~v~~g~~p~~~L 248 (304)
T PRK07419 233 LELLPVLLGFWPWTTL 248 (304)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 8776666555565543
No 36
>PLN02922 prenyltransferase
Probab=99.97 E-value=2.3e-27 Score=234.29 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=179.3
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccCCCCCC
Q 015392 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL 186 (408)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~R 186 (408)
.++++.|++.+||+++..+++++++|.++|......+++.. .++++++++++++++|.+|||+|.+ .|+.++..+
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV 88 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence 35688899999999999999999999999965434677653 5678899999999999999999986 576543222
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHH---h--hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHH
Q 015392 187 PLASGDLSMGTGLAITLTLSLTSLAIAL---S--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL 261 (408)
Q Consensus 187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~---~--lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~ 261 (408)
....| |++++...++.+.++++...+ . .+++.+.++ +++++.+++|| .||+++|++++ |++.++..+|.
T Consensus 89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~ 162 (315)
T PLN02922 89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGP 162 (315)
T ss_pred CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHH
Confidence 22344 899998887776666553222 1 244445444 47999999999 59999999996 79888888888
Q ss_pred HHHHHHHHHHHHHhhcC-cc---cchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHH
Q 015392 262 VYQFSFFIHFQKYVLGR-PV---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 337 (408)
Q Consensus 262 ~~~~G~~~~~~~~v~g~-~~---~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll 337 (408)
.+..|.|.. ++...+. .. ..+...+...+.+++++.++.+.||++|+|+|++.|+||+|+++|++++.++...+.
T Consensus 163 l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~ 241 (315)
T PLN02922 163 LATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAV 241 (315)
T ss_pred HHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHH
Confidence 777776553 2211111 00 123345566777788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhH
Q 015392 338 FFAYGVSVIVGASSSFQLV 356 (408)
Q Consensus 338 ~~ay~~~~~~~~~~~~~~~ 356 (408)
..+|+..+........+++
T Consensus 242 ~~~y~~~i~~v~~~~~p~~ 260 (315)
T PLN02922 242 LLLYSLLAALGLLKALPLP 260 (315)
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 9999887766655545543
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=1.2e-27 Score=233.47 Aligned_cols=225 Identities=15% Similarity=0.062 Sum_probs=174.0
Q ss_pred ccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccCC--CCCCcccccccCH
Q 015392 120 RPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVN--KPDLPLASGDLSM 195 (408)
Q Consensus 120 Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~in--kp~RPl~sG~iS~ 195 (408)
||+++..+++++++|.++|.... .+++.. .++++++++++|+++|.+|||+|.+ .|+.+ +|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999996543 677643 5677889999999999999999985 36543 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhCh-----hHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHH
Q 015392 196 GTGLAITLTLSLTSLAIA----LSLQS-----PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS 266 (408)
Q Consensus 196 ~~a~~~~~~~~~l~l~l~----~~lg~-----~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G 266 (408)
+++...++++++++++++ +..++ +.+++..+++++.+++|| .||+++|++++ |++.++..+|....+|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHH
Confidence 999988887776555443 44454 133222346888999999 58999999995 8999998889887777
Q ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 015392 267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (408)
Q Consensus 267 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~ 346 (408)
.+.+ + .+.. +...++..+..++++.++++.||++|+|+|+++|+||+|+++|+|+++++...++..+|+..++
T Consensus 154 ~~yv-q----~~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~ 226 (284)
T TIGR00751 154 TQYL-Q----AHRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV 226 (284)
T ss_pred HHHH-h----cCCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence 5543 2 2222 2333444556677778889999999999999999999999999999999999998899887666
Q ss_pred HHHhhhhhhHHH
Q 015392 347 VGASSSFQLVKL 358 (408)
Q Consensus 347 ~~~~~~~~~~~~ 358 (408)
.......+++.+
T Consensus 227 ~~~~~~~p~~~l 238 (284)
T TIGR00751 227 FMLATPISWWCV 238 (284)
T ss_pred HHHHhhchHHHH
Confidence 555444555433
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.9e-27 Score=233.36 Aligned_cols=271 Identities=15% Similarity=0.151 Sum_probs=172.1
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC-------
Q 015392 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN------- 182 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in------- 182 (408)
+++++|++++||++++....+++.|.++|......+++.. +++..+++.++..++|++|||.|+|+|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999998877877788888732112234421 232334444555777999999999999875
Q ss_pred --C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhCh----hHHHHHHHHHHHHheeccCCcccccccCC---Cccc
Q 015392 183 --K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTK---PFLA 251 (408)
Q Consensus 183 --k--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~----~~l~~~l~~~~~l~~~Ys~~~PplrlKr~---~~~~ 251 (408)
| ++||+++|++|+++++.+.+++.++|+.++..++. ..+.++ +.+.++++.|+. -||. | .+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p-~~ 151 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYP-VA 151 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------cccccccc-HH
Confidence 3 48999999999999999999999999888776553 222222 356677888884 2332 3 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHH
Q 015392 252 GMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331 (408)
Q Consensus 252 ~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~ 331 (408)
.+.-+...+..+..| +. ..|. . +...+...++..+|+.+++.+||++|+|||++.|+||+|+++|++++.+
T Consensus 152 ~l~G~~~~~~~~~~g-~~-----~~g~-~--~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~ 222 (297)
T PRK12871 152 QLLGRTDFTLFPAAG-YL-----CYGQ-P--DMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY 222 (297)
T ss_pred HHHHHHHHHHHHHHH-HH-----HhCC-C--cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence 211111222222233 22 1232 1 2233444566677889999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhHHHHHH--HHHHHHHHHHHh
Q 015392 332 LCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF--IWKLFYAEYLLI 404 (408)
Q Consensus 332 l~~~ll~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~~f~~~--iw~l~~~~y~~~ 404 (408)
....+..+.....+ +.....++ ..+....++.+..+.++.+..+.+++++|-+-|.. ....+|..-+++
T Consensus 223 ~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 293 (297)
T PRK12871 223 WVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIIL 293 (297)
T ss_pred HHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54444333332222 22223332 11222234555567788888888888887544432 444444444443
No 39
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=2.4e-26 Score=224.36 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=174.1
Q ss_pred HHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--ccCCCCCCcccccc
Q 015392 115 LYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVNKPDLPLASGD 192 (408)
Q Consensus 115 y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~--D~inkp~RPl~sG~ 192 (408)
|++.+||+++..+++++++|.++|......+++.. .+++++++++.|+++|.+|||+|.+. |+.+. ....++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence 67899999999999999999999965444677653 56778899999999999999999864 77432 1222333
Q ss_pred cCHHHHHHHHHHHHHHHHHH----HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHH
Q 015392 193 LSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (408)
Q Consensus 193 iS~~~a~~~~~~~~~l~l~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~ 268 (408)
.+++++....+++..+++.+ .+..+++.+.++ +++++.++.|| .||+++|++++ |++.++..+|...+.|.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence 45778777766666555443 444564444444 46999999999 59999999996 899999999988777655
Q ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 015392 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (408)
Q Consensus 269 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~ 348 (408)
.+ + .+ .++...+...+.+++.+.++.+.||++|+|+|++.|+||+|+++|+|++.++...++..+|+..+...
T Consensus 153 yv-q----t~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v 225 (285)
T TIGR02235 153 YA-Q----SQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV 225 (285)
T ss_pred HH-h----CC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence 43 2 22 22334455566777788889999999999999999999999999999999999999999998876666
Q ss_pred HhhhhhhHHHH
Q 015392 349 ASSSFQLVKLV 359 (408)
Q Consensus 349 ~~~~~~~~~~~ 359 (408)
.....+|..++
T Consensus 226 ~~~~~p~~~ll 236 (285)
T TIGR02235 226 IGGFLPWTTLL 236 (285)
T ss_pred HHhhhHHHHHH
Confidence 55555554443
No 40
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=9.2e-27 Score=226.38 Aligned_cols=217 Identities=21% Similarity=0.184 Sum_probs=154.6
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccccc
Q 015392 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG 191 (408)
Q Consensus 112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG 191 (408)
+|.+++++||.+|+.+.+++..|+++|.+ .+ ++.+ ++.++......+.+.|++|||+|+|.|+.|++.+.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 36789999999999999999889999932 22 2321 222222344555555677999999999999765443 58
Q ss_pred ccCHHHHHHHHHHHHH-----HHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHH
Q 015392 192 DLSMGTGLAITLTLSL-----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS 266 (408)
Q Consensus 192 ~iS~~~a~~~~~~~~~-----l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G 266 (408)
.++++++......+.+ .++.+....+++.+.++ .++++.++.|| .||.|+|++++.++++.+..+.....+|
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHH
Confidence 8999988444333332 33333343365555544 46889999999 5899999999988865544443223344
Q ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 015392 267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (408)
Q Consensus 267 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~ 346 (408)
.+. + ++. .+...++....+.+++.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++++..+.
T Consensus 151 ~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 151 LVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2 332 22334555667778899999999999999999999999999999999999999998888876653
No 41
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.95 E-value=6.9e-26 Score=218.83 Aligned_cols=277 Identities=18% Similarity=0.185 Sum_probs=194.1
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccC----CC
Q 015392 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKV----NK 183 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~i----nk 183 (408)
++.+.|++++|||+++.++.+++.|.++|......+++. ..++++++++++++.+|..|||.|.+ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 456899999999999999999999999997544345543 36788999999999999999999986 5643 22
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHH----HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHH
Q 015392 184 PDLPLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (408)
Q Consensus 184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~ 259 (408)
.++-+...+++++..+.+.+.+...+.++ ....+++.+.++ +++++.++.|+. +|+++++.|+ |++.++.++
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHH
Confidence 34555556666777766666555444333 344566644444 579999999995 7999999885 899888888
Q ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHH
Q 015392 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (408)
Q Consensus 260 g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ 339 (408)
|.....|.+.. | .+ ..+...+...+...+.+.++...|+++|+|+|+++|++|+|+++|+++++.+...++..
T Consensus 159 G~l~v~g~~yi-q----t~--~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 159 GPLIVLGAYYI-Q----TG--RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHH-h----cc--cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 88776665442 2 12 22333555566677777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccC--CCh---Hh--hHHHHHHHHHHHHHHHHHh
Q 015392 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL--SNN---AS--TYSFYMFIWKLFYAEYLLI 404 (408)
Q Consensus 340 ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~--~~~---~~--~~~f~~~iw~l~~~~y~~~ 404 (408)
+|+..++.......+++.++..+. ..+ ..+..+.+.. ..+ .. .....+.+|.+.++--+++
T Consensus 232 a~l~~~~~~i~~~~~~~~ll~ll~-~Pl---~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~ 299 (303)
T COG1575 232 AYLAIVIFVILGLFPVWGLLFLLA-LPL---AIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILL 299 (303)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHH-HHH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876655555555544332222 222 2223333311 111 12 2345556888888765554
No 42
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=5.9e-26 Score=221.71 Aligned_cols=230 Identities=21% Similarity=0.220 Sum_probs=160.2
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCccc
Q 015392 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (408)
Q Consensus 110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~ 189 (408)
+.+++++++.|+.+...+..++..+...... . +... .....++.++.+.++|++||+.|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~-~-~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL-L-GLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH-H-cChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 4578999999999988777666554322110 1 1111 2355668899999999999999999999999999998
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHHHheeccCCcccc-cccCCCccchHHHHHHHHHHHHHHH
Q 015392 190 SGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSF 267 (408)
Q Consensus 190 sG~iS~~~a~~~~~~~~~l~l~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~Ppl-rlKr~~~~~~l~i~~~~g~~~~~G~ 267 (408)
+++...+.+..+..+...+++.+. ...|++.+.+++ ++.++++.||. ||. |+||.|.++|++++..+|..+.++.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 554444444334444444444432 234776666554 57778999995 555 5899999999999998887665433
Q ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 015392 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (408)
Q Consensus 268 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~ 347 (408)
+.. .+.. ++...+...++++++.+++++++|++|+|+|+++|+||+|+++|+|++.++...+..++++..+..
T Consensus 152 ~~~-----~~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~ 224 (285)
T PRK12872 152 VYY-----YQLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG 224 (285)
T ss_pred HHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1111 222334444555566778889999999999999999999999999999999888888887776655
Q ss_pred HHhhhhhhH
Q 015392 348 GASSSFQLV 356 (408)
Q Consensus 348 ~~~~~~~~~ 356 (408)
......++.
T Consensus 225 ~~~~~~~~~ 233 (285)
T PRK12872 225 VYTGLLPLL 233 (285)
T ss_pred HHHhHhhHH
Confidence 444334443
No 43
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=2.7e-26 Score=219.15 Aligned_cols=188 Identities=29% Similarity=0.407 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccC--CCCCCcccccccCHHHHHHHHHH
Q 015392 127 TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT 204 (408)
Q Consensus 127 ~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~i--nkp~RPl~sG~iS~~~a~~~~~~ 204 (408)
+..+++.|.+.+... ..++. ....+.++.++.+.++|.+||+.|+|+|++ |+|+||+++|+++++++..++++
T Consensus 4 ~~~~~l~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGG--PFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 445566664444332 23332 245566677799999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccchH
Q 015392 205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284 (408)
Q Consensus 205 ~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~ 284 (408)
+.++++++++..++..+.+.+ ++.+.+++|| ||+|+||++++++++++..++..+..|++. .++.. +.
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~ 146 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGDP--PP 146 (257)
T ss_pred HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCcc--cH
Confidence 999999999888987777664 5667779999 788999999999999888777665555543 12221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHH
Q 015392 285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~ 331 (408)
+.+....+..++.......+|++|+|+|++.|+||+|+++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 33333444455666777788999999999999999999999999986
No 44
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=4.3e-27 Score=220.36 Aligned_cols=278 Identities=17% Similarity=0.114 Sum_probs=200.1
Q ss_pred hhhHHHHHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 015392 103 SFWDVLLKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID 179 (408)
Q Consensus 103 ~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D 179 (408)
++.+..+.+++.|.|++|.+..+++.+.. ....++|... ...+. +.-+.++-++++++++++|++||+.|+|+|
T Consensus 55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD 131 (353)
T KOG1381|consen 55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLD 131 (353)
T ss_pred hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccch-hHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence 33344456699999999999999986643 4455555422 11111 111334556899999999999999999999
Q ss_pred cCCCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHH
Q 015392 180 KVNKP--DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT 257 (408)
Q Consensus 180 ~inkp--~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~ 257 (408)
+..++ .||+++|++|+++|+.+..+.+.+++.+...+|+....++. .++.+.+.|+. +||.+++.+++.+.
T Consensus 132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgl 204 (353)
T KOG1381|consen 132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGL 204 (353)
T ss_pred hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhh
Confidence 97764 89999999999999999999999999999999998887764 68888999996 89999999887654
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHH
Q 015392 258 VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 337 (408)
Q Consensus 258 ~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll 337 (408)
.+.....+|+- ..++.. ++...+-+.+.-..|++.+++++++||.++|.+.|+|+.+.++|++...|++..-
T Consensus 205 tfnwGAllGw~------A~~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~- 276 (353)
T KOG1381|consen 205 TFNWGALLGWC------ALKGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG- 276 (353)
T ss_pred hcchhhhhcch------hhcCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-
Confidence 44333333322 122222 1211222333344678889999999999999999999999999999888876432
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHhhH-HHHHHHHHHHHHHH
Q 015392 338 FFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFYMFIWKLFYAEY 401 (408)
Q Consensus 338 ~~ay~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~~~~~~~~-~f~~~iw~l~~~~y 401 (408)
.........+|..+...| .+..++...+..+.++...+|++|+.+|. .|..++|-.++.-+
T Consensus 277 a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~ 338 (353)
T KOG1381|consen 277 AAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFS 338 (353)
T ss_pred HHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHH
Confidence 222233345566666555 34445677788899999999999988875 55556776665544
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.6e-24 Score=210.98 Aligned_cols=220 Identities=22% Similarity=0.236 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R 186 (408)
..+.++.|+++.||+++..++.++++|.++|....++ +++..+ .+++. ..+..+.+.|++||++|+|+||.|++++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~~-~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFAY-FLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHHH-HHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 4568889999999999999999999999999654322 333211 11111 1133456667799999999999998754
Q ss_pred c---ccccccCHHHHHH-HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 187 P---LASGDLSMGTGLA-ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 187 P---l~sG~iS~~~a~~-~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
. ++ .+.+.+.. ..++...+++.+....++....+ ++..+++++.|| .||+|+|++++.+..+.+ .+...
T Consensus 81 ~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g-~~~~~ 153 (282)
T PRK12875 81 REREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYS--APPLRFKTTPVLDSLSNG-LYILP 153 (282)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc--CCCccchhccHHHHHHHH-HHHHH
Confidence 3 33 11122222 22223344444444444433332 245788999999 599999999986544322 22222
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHH
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~ 342 (408)
...+++.. .+. .+...+ .+..++++.+++++||++|+|+|+++|+||+|+++|++++.+++...+.++.+
T Consensus 154 ~~~~y~~~------tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 154 GVAAYALV------SGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHHHH------cCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence 22233221 222 222222 22335778889999999999999999999999999999999887777666655
Q ss_pred HHHHH
Q 015392 343 VSVIV 347 (408)
Q Consensus 343 ~~~~~ 347 (408)
.....
T Consensus 224 ~~~~~ 228 (282)
T PRK12875 224 AFAAV 228 (282)
T ss_pred HHHHH
Confidence 54443
No 46
>PLN02776 prenyltransferase
Probab=99.93 E-value=5.7e-24 Score=210.76 Aligned_cols=195 Identities=15% Similarity=0.065 Sum_probs=144.0
Q ss_pred hhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC--CCCcccccccCH
Q 015392 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM 195 (408)
Q Consensus 118 l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~sG~iS~ 195 (408)
++||+.....+++.+.|+++|.+... ++. .+++++++.+++++++|++||++|+|+|++|+ ++||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 46888888889999999999864332 222 24667789999999999999999999999876 499999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH-HHHHHHHHH
Q 015392 196 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-FSFFIHFQK 273 (408)
Q Consensus 196 ~~a~~~~~~~~~l~l~l-~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~-~G~~~~~~~ 273 (408)
++|+.+++++.++|+.+ ++++|+.+..++++..+++...||. +||++.+ +..++++.|...+ +|+.++
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Av--- 145 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAA--- 145 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999988854 5678988877765434445678995 8999987 5678877774444 555432
Q ss_pred HhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecc--hhhHHHH
Q 015392 274 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG--KENVLRL 332 (408)
Q Consensus 274 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG--~~~a~~l 332 (408)
++...+ ..+++.+.+.+|.........+.|.|||+++|++++|+.-+ ++.+..+
T Consensus 146 ---tg~~~~--~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i 201 (341)
T PLN02776 146 ---SGQLDA--GAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVA 201 (341)
T ss_pred ---cCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHH
Confidence 222222 23344455556665444555677888999999999999763 4444443
No 47
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.9e-25 Score=211.41 Aligned_cols=261 Identities=17% Similarity=0.212 Sum_probs=184.2
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC--C
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--D 185 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~ 185 (408)
...++++|+++++|+......++...|+++|... ..++. .++.++++..+..++++++|++.|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 5688999999999999999999999999999752 23433 257788899999999999999999999999885 9
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH
Q 015392 186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264 (408)
Q Consensus 186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~ 264 (408)
||+++|++++++++.++.++.++|+.+. +..|+.+..++++..++.+.+||.+ +||++.. |+.+++..|..++
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence 9999999999999999999999999887 7789888877777788899999985 8999986 6677777776655
Q ss_pred -HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHH-H
Q 015392 265 -FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY-G 342 (408)
Q Consensus 265 -~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay-~ 342 (408)
+|+.++ .| ....+..+++.++|+|.......+ ++.-.||-+++|+..+|++-|++.+.+. +..+.+.. .
T Consensus 163 liGwaAv-----tg-~~~~~a~~Lf~IiF~WtPpHfwAL--Al~~~~DY~~AgiPMlPvv~G~~~t~~~-I~~y~~~l~~ 233 (304)
T COG0109 163 LIGWAAV-----TG-SISLGAILLFAIIFLWTPPHFWAL--ALKYKDDYKAAGIPMLPVVKGERRTKRQ-ILLYTLALAP 233 (304)
T ss_pred cceeeee-----eC-CCCchHHHHHHHHHHhccHHHHHH--HHHHHHHHHHcCCCcccccccHHHHHHH-HHHHHHHHHH
Confidence 565432 22 233344445556666543222222 1223445599999999999999998764 33333222 2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccC--CChHhhHHHHH
Q 015392 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL--SNNASTYSFYM 391 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~d~--~~~~~~~~f~~ 391 (408)
+.++... .+..+..|.+...+++..+.+...+.-. +++.+.+-|..
T Consensus 234 ~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~ 281 (304)
T COG0109 234 VSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKY 281 (304)
T ss_pred HHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 2222222 2223345555556666666666555522 23344444433
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=6e-24 Score=207.20 Aligned_cols=180 Identities=19% Similarity=0.138 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCC
Q 015392 159 SAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVD 238 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~ 238 (408)
.+.+...++|++||++|+|+|++|+|+||.+ +++.+..++++..++|+.+++..|++. ++ +++.+.+++||.+
T Consensus 66 ~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS~G 138 (307)
T PRK13591 66 AGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYSKG 138 (307)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhcCC
Confidence 5567788999999999999999999999987 788999999999999999999888643 33 4678889999963
Q ss_pred --ccc--ccccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhh
Q 015392 239 --LPF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 314 (408)
Q Consensus 239 --~Pp--lrlKr~~~~~~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~ 314 (408)
.+| +|+|+.+.+||+.++..+|.....+. +. .... + .+.....++.....++++++||++|+|||++
T Consensus 139 lk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~--~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~ 209 (307)
T PRK13591 139 IKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGS--L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTL 209 (307)
T ss_pred CCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhh--H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 224 48899999999999988876432211 00 0000 0 0111111111112356778999999999999
Q ss_pred cCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015392 315 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 354 (408)
Q Consensus 315 ~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~~~~~~~~~~~~ 354 (408)
.|+||+|+++|++++.++...+..+++++.++.....-.+
T Consensus 210 ~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~ 249 (307)
T PRK13591 210 AGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA 249 (307)
T ss_pred cCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999888888887766555543333
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=9.3e-24 Score=204.25 Aligned_cols=178 Identities=13% Similarity=0.147 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH
Q 015392 152 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 231 (408)
Q Consensus 152 ~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l 231 (408)
+.+++.+.+++..+++|++|||+|+|+||+|+|+||+|||++|++++..++.++.++++.++... ...+ ...++
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence 45666777888999999999999999999999999999999999999999998877777776544 1111 23344
Q ss_pred heec-----cCCcccccccCCCccchHHHHHHHHHHHHHH--HHHHH-HHHhhcCcccchHHHHHHHHHHHHHHHHHHHH
Q 015392 232 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS--FFIHF-QKYVLGRPVVITRPLIFAAAIISTISAVMSLL 303 (408)
Q Consensus 232 ~~~Y-----s~~~PplrlKr~~~~~~l~i~~~~g~~~~~G--~~~~~-~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
.+.| +. ++|+.++.||+.++...+..+..| ++... +....|.+. .....+.+.+...+.++++|+.
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 5556 64 489999999999988777655333 22210 111112211 1111123333444557899999
Q ss_pred hccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 015392 304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (408)
Q Consensus 304 ~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay~~ 343 (408)
+|++| |||++ |.+|+|+++|.|++.++...+..++.+.
T Consensus 195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence 99999 88886 5999999999999988877776555443
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.85 E-value=1.3e-19 Score=188.45 Aligned_cols=192 Identities=25% Similarity=0.298 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--
Q 015392 105 WDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN-- 182 (408)
Q Consensus 105 ~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in-- 182 (408)
+++.+.++++|++++|||.+++.++.++ +.+.+.. ..+. ..+..+++++++..++.+++|++||+.|+|+||+|
T Consensus 184 ~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~~--~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~r 259 (479)
T PRK08238 184 FPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGDL--QALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPR 259 (479)
T ss_pred cCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCC
Confidence 3445678999999999999999988644 7766633 2222 22234567778888999999999999999999998
Q ss_pred CCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHH
Q 015392 183 KPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (408)
Q Consensus 183 kp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~ 262 (408)
|++||++||++|+++|+.++.+++++|+.+++.+|+..+.. ++..+++.++||. ++||+++++++++++.++..
T Consensus 260 k~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr 333 (479)
T PRK08238 260 KRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV-LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLR 333 (479)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHH
Confidence 57999999999999999999999999999999999855443 3468888899996 48999999999888777665
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCC
Q 015392 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF 317 (408)
Q Consensus 263 ~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~ 317 (408)
+..|..+ .+ .. .+.|++ ++..++.+...+.|...|.++++..|.
T Consensus 334 ~~~G~~a------~~--~~--~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 334 IIAGAAA------IG--VA--LSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHH------hc--cC--HHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 5555432 12 11 222222 223334556678899999999888886
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.85 E-value=3.8e-19 Score=174.14 Aligned_cols=150 Identities=25% Similarity=0.331 Sum_probs=116.7
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--CCC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPD 185 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~ 185 (408)
..+++++|++++||+.+++.++.+.. .+++..... .. .+...++++++..++++++|++||++|+|+||+| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~~~-~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNLLN-PG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHH-HHHHHhhcc-cc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 45688999999999999998875544 344432111 11 1223456666778889999999999999999996 689
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHHH
Q 015392 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (408)
Q Consensus 186 RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~~ 265 (408)
||+++|++|+++++.+++++.++|+.+++.+|+.+..+. +..+++.++||. ++||++++++++++..++.-+..
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888766654 467788899996 48999999998887666544444
Q ss_pred HH
Q 015392 266 SF 267 (408)
Q Consensus 266 G~ 267 (408)
|.
T Consensus 157 G~ 158 (295)
T PRK12324 157 GG 158 (295)
T ss_pred HH
Confidence 43
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.8e-14 Score=138.71 Aligned_cols=260 Identities=14% Similarity=0.136 Sum_probs=165.2
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCC--CC
Q 015392 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DL 186 (408)
Q Consensus 109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~R 186 (408)
.+.++.|+|+.+|+-....+++...|+++|.++. +++ .++.+.++..+..+++|.+||+++.+.|..+++ .|
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R 164 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR 164 (409)
T ss_pred cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence 3577899999999987777888888999886652 222 356778899999999999999999999998875 99
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHheeccCCcccccccCCCccchHHHHHHHHHHHH-
Q 015392 187 PLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ- 264 (408)
Q Consensus 187 Pl~sG~iS~~~a~~~~~~~~~l~l~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~~~g~~~~- 264 (408)
|+++|++|+..|+.++.+....|+.+..+ +|+....++..=.++.+++|+- +||.... |..++.+.|.+.|
T Consensus 165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihii-nTWvGavVGAIPPL 237 (409)
T KOG1380|consen 165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHII-NTWVGAVVGAIPPL 237 (409)
T ss_pred ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhhh-hhHHHHHhccCCcc
Confidence 99999999999999999998888777554 7877776665445677888984 8887764 5666666676665
Q ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceec---chhhHHHHHHHHHHHHH
Q 015392 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL---GKENVLRLCVYALFFAY 341 (408)
Q Consensus 265 ~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~l---G~~~a~~l~~~ll~~ay 341 (408)
+|+.+. .|. ......++..+++.|-|..-..+-.+++ ++-.+.|.+.+++.= -++.+.+.+..++.+.|
T Consensus 238 MGwAAa-----sg~-l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~ 309 (409)
T KOG1380|consen 238 MGWAAA-----SGL-LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY 309 (409)
T ss_pred chhhhh-----ccC-CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence 565332 121 1111112222233332222222223332 233899999998853 33445555555544443
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChHhhHHHHHHHHHH
Q 015392 342 GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYMFIWKL 396 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~ila~~l~~~~~~~--d~~~~~~~~~f~~~iw~l 396 (408)
.... .....+.+.+-...+...+.+.+.+. |.+.+.+.+-|+..+|-|
T Consensus 310 ~~~~-------~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhL 359 (409)
T KOG1380|consen 310 AAPS-------TDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHL 359 (409)
T ss_pred cccc-------cCcccceeeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 2211 11112223333344455555555555 444455665555544433
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.42 E-value=5.2e-13 Score=123.31 Aligned_cols=227 Identities=17% Similarity=0.181 Sum_probs=157.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc--CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccccCCC
Q 015392 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS--FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKVNK 183 (408)
Q Consensus 108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~--~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~ink 183 (408)
...+.+.|+-..||+..-.++.+...|.++|... ..++... ..+++.++++..+.++|.+|.|+|. .+|+...
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~---~~fl~a~avlavh~agnlvntyfdf~kgid~kka 133 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA---TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA 133 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH---HHHHHHhhheeeecccchhhhhhhhhhccccccc
Confidence 3578899999999999999999999999999643 2344432 2456677888899999999999997 5888877
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHH---HHhhChhH---HHHHHHHHHHHheeccCCcccccccCCCccchHHHHH
Q 015392 184 PDLPLASGDLSMGTGLAITLTLSLTSLAI---ALSLQSPP---LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT 257 (408)
Q Consensus 184 p~RPl~sG~iS~~~a~~~~~~~~~l~l~l---~~~lg~~~---l~~~l~~~~~l~~~Ys~~~PplrlKr~~~~~~l~i~~ 257 (408)
.+|.++...+.+.++..+++++...|... ...+++.. +.+.-+.++--.++|+.+ +.+|+..+ |.+++.+
T Consensus 134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili 209 (359)
T KOG4581|consen 134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILI 209 (359)
T ss_pred cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEE
Confidence 89999999999999999888887665443 23344321 111113455567889864 45677664 5665666
Q ss_pred HHHHHHH-HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHH
Q 015392 258 VFGLVYQ-FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 258 ~~g~~~~-~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
.+|.+.. +++ + .+ .+...|.+ .. -.+.+..-+=++.+-|+.+|.|.||++|+-|+++.+|+..+-.++..+
T Consensus 210 ~fgpiavlfaf-~-~q----~g~l~~~~-l~-yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~l 281 (359)
T KOG4581|consen 210 LFGPIAVLFAF-A-IQ----TGHLAIFP-LG-YAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAML 281 (359)
T ss_pred eechHHHHHHH-H-Hh----cCceeEEe-eh-heeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHH
Confidence 6665433 222 2 12 12222211 00 011122223466788999999999999999999999999888888878
Q ss_pred HHHHHHHHHHHHH
Q 015392 337 LFFAYGVSVIVGA 349 (408)
Q Consensus 337 l~~ay~~~~~~~~ 349 (408)
+.+.|.+..+.+.
T Consensus 282 lf~py~lf~i~~~ 294 (359)
T KOG4581|consen 282 LFAPYLLFFIFAL 294 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665554
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=92.09 E-value=0.63 Score=45.99 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccCCCCCCccc
Q 015392 155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (408)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~ 189 (408)
+..+......+..+..|++.|.|+|+.|+++.+..
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav 214 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV 214 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee
Confidence 34445566677778899999999999998765444
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.60 E-value=2.7 Score=40.94 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392 159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (408)
..++.......+||+-|+|.|+.++ +.-|..-|+
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 4445556667889999999999755 566766664
No 56
>PRK13591 ubiA prenyltransferase; Provisional
Probab=88.21 E-value=1.2 Score=44.19 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=37.2
Q ss_pred hhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHHH---HHHHHHHhhC-----hhHHHHHHHHHHHHheeccC
Q 015392 169 TVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSL---TSLAIALSLQ-----SPPLIFGLIVWFLLGTAYSV 237 (408)
Q Consensus 169 ~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~~---l~l~l~~~lg-----~~~l~~~l~~~~~l~~~Ys~ 237 (408)
.+||+-|.|.|+.++ +.-|+.=|+ +.+..+...+.+ +..+++...| +...+.+++.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999876 456665553 333333222221 1222222222 23344455667778888885
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=87.88 E-value=4.4 Score=40.26 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHH
Q 015392 162 LMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAIT 202 (408)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~ 202 (408)
+........||+-|+|.|+.+++ .-|.- +.++.+..+.
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~ly 223 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIVR---LGTKRGAQLL 223 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceeee---echHhHHHHH
Confidence 45666778899999999998764 34433 3345554443
No 58
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=87.05 E-value=4.5 Score=39.58 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 156 ALLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
..++.++....-..+|++.|+|.|+.. .|.-|..-|+
T Consensus 165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 345666777778889999999999965 4778887774
No 59
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=85.66 E-value=3.1 Score=41.61 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHHHHHHHH
Q 015392 156 ALLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLT 208 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~~~~~~l 208 (408)
..+...+........||+.|+|.|+.+++ .-|.. +.++.+..+...+.++
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~---lG~~~a~~l~~~l~~~ 244 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYY---IGREKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeee---EcHHhHHHHHHHHHHH
Confidence 34455566667788999999999998764 44443 3355555444443333
No 60
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=84.96 E-value=8.2 Score=37.94 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhC
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ 217 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg 217 (408)
++..+...+...+|++-|.|.||.+. +.-|. ++.++.+..+...+.+++.++...++
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444577788999999999999765 34443 34577777777777666655544444
No 61
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.91 E-value=6.6 Score=38.42 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (408)
..+..++....-...|++.|+|.|+.++ +.-|..-|+
T Consensus 170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3445566677777889999999999754 677776664
No 62
>PRK13592 ubiA prenyltransferase; Provisional
Probab=84.45 E-value=22 Score=35.34 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCCchhhhhcCCcccceecch---hhHHHHHHHHHHHHH
Q 015392 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCVYALFFAY 341 (408)
Q Consensus 295 ~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG~---~~a~~l~~~ll~~ay 341 (408)
+...+-.++||+.|+|-|+.. +..=|+--|+ +.++..+..+..++.
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l 105 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSV 105 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 334556788999999999655 7676776664 555555544433333
No 63
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=83.95 E-value=4.6 Score=39.38 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
.+..++.+..-..+||..|+|.|+.. .|.-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 33455666677789999999999764 4677777673
No 64
>PLN02922 prenyltransferase
Probab=83.73 E-value=4.5 Score=40.42 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHH
Q 015392 159 SAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAIT 202 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~ 202 (408)
...+........||+-|+|.|+.+++ .-|.. +.++.+..+.
T Consensus 196 p~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~ 237 (315)
T PLN02922 196 LVGLTTTLILFCSHFHQIDGDRAVGKMSPLVR---LGTEKGSRVV 237 (315)
T ss_pred HHHHHHHHHHHHccCcchhhHHHcCccceeeE---EChHHHHHHH
Confidence 34455567778899999999998875 33433 3345554443
No 65
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=83.18 E-value=10 Score=37.28 Aligned_cols=45 Identities=13% Similarity=-0.000 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHHHHHH
Q 015392 159 SAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLS 206 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~~~~~ 206 (408)
...+...+....||+-|+|.|+.+.+ .-|. ++.++.+..+...+.
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~ 214 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI 214 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence 33456677788899999999998764 4443 334555554444333
No 66
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=82.61 E-value=6.7 Score=38.85 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHHhccCCchhhhhc-CCcccceecch---hhHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQF-GFQSISSKLGK---ENVLRLCVYA 336 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~-G~~Tlpv~lG~---~~a~~l~~~l 336 (408)
..+...+||+-|.|.|++. .++.=|..=|+ +.+......+
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l 102 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL 102 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence 3456789999999999986 23333444444 4454444333
No 67
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=82.17 E-value=10 Score=37.57 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=26.2
Q ss_pred HHHHHHHHHhccCCchhhhhcCCcccceecc---hhhHHHHHHHHH
Q 015392 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYAL 337 (408)
Q Consensus 295 ~~~~~~~~~~di~D~egD~~~G~~Tlpv~lG---~~~a~~l~~~ll 337 (408)
+...+...+||+-|.|.|++.+. +=|+.-| .+.+......+.
T Consensus 65 l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~ 109 (306)
T TIGR02056 65 CLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLF 109 (306)
T ss_pred HHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHH
Confidence 33455688899999999987763 4455444 344544443333
No 68
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=81.92 E-value=11 Score=37.09 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHH
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIAL 214 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~ 214 (408)
++..+...+...+|++-|+|.|+..+ +.-|.. +..+.+..+..++.+++..+-.
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHHHHH
Confidence 34456677778999999999999654 555553 3355666555555555544433
No 69
>PLN00012 chlorophyll synthetase; Provisional
Probab=80.21 E-value=5.7 Score=40.67 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 160 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
..+...+....||+-|+|.|+.. ++.-|..-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 34556667889999999999865 5777876664
No 70
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=80.19 E-value=13 Score=36.43 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhhccccccccCCC-CCCcccccccCHHHHHHHHHHHH
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLS 206 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS~~~a~~~~~~~~ 206 (408)
+...+........||+.|+|.|+.++ +.-|.-=| .+.+..+...+.
T Consensus 175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~ 221 (293)
T PRK06080 175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALL 221 (293)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHH
Confidence 34445566677889999999999765 34444334 444444443333
No 71
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=80.04 E-value=14 Score=35.77 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=23.5
Q ss_pred HHHHHHHhccCCchhhhhcCCcccceecch
Q 015392 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGK 326 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~~Tlpv~lG~ 326 (408)
..+...+||+-|.|.|++. ++.=|..-|+
T Consensus 50 ~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 50 SGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 4455788999999999988 7777877775
No 72
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=77.91 E-value=19 Score=35.38 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhhccccccccCCCC-CCcccccccCHHHHHHHHHHH
Q 015392 161 VLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTL 205 (408)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a~~~~~~~ 205 (408)
.+........|++-|+|.|+.+.+ .-|. ++.++.+..+...+
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l 216 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGL 216 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHH
Confidence 345566777999999999998764 3333 33455555444333
No 73
>PRK13595 ubiA prenyltransferase; Provisional
Probab=77.39 E-value=47 Score=32.89 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHhccCCchhhhhcCCc
Q 015392 297 SAVMSLLKDIPDEDGDKQFGFQ 318 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~~ 318 (408)
......+||+-|.|.|+++-++
T Consensus 60 n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 60 NLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHhhhhhhhhccCCCC
Confidence 4556778999999999876543
No 74
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=77.09 E-value=5.8 Score=39.33 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (408)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (408)
.++.++...+-.++|+..|+|.|+..+ +.-|+.=|+
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~ 219 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGK 219 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhh
Confidence 446667777788999999999998654 677776663
No 75
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=76.81 E-value=18 Score=35.60 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCC-CCCcccccccC
Q 015392 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLS 194 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~iS 194 (408)
..+..++...+-..+|++.|+|.|+..+ +.-|+.-|+-+
T Consensus 171 l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~ 210 (290)
T PRK12870 171 LWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYA 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcccc
Confidence 3446677788888999999999998754 66676666443
No 76
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=76.59 E-value=23 Score=34.54 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccCCC-CCCccccccc
Q 015392 155 KALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDL 193 (408)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~i 193 (408)
+..+..++....-...|.+.|+|.|+..+ |.-|+.-|.-
T Consensus 166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 205 (282)
T PRK12848 166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY 205 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence 33445666677777889999999999755 6777776653
No 77
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=76.25 E-value=7.4 Score=38.73 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 162 LMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
+...+....||+.|+|.|+.. ++.-|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 345556789999999999875 4677776664
No 78
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=75.43 E-value=27 Score=34.21 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (408)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (408)
.+...+...+-..+|++.|+|.|+..+ +.-|..-|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 345566677788999999999998654 677776664
No 79
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=74.17 E-value=21 Score=35.25 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
.+..++.+..-...||+.|+|.|+.+ .+.-|+.-|+
T Consensus 181 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 181 MVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 34556667778899999999999875 4677887775
No 80
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=73.74 E-value=8.5 Score=37.90 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhccccccccC-CCCCCcccccc
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKV-NKPDLPLASGD 192 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~i-nkp~RPl~sG~ 192 (408)
+..++.+..-..+|++.|+|.|+. +.|.-|+.-|+
T Consensus 169 ~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 169 LAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 344555556667888999999986 45788887775
No 81
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=72.89 E-value=19 Score=33.80 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccCCchhhhhc-CCcccceecch
Q 015392 295 TISAVMSLLKDIPDEDGDKQF-GFQSISSKLGK 326 (408)
Q Consensus 295 ~~~~~~~~~~di~D~egD~~~-G~~Tlpv~lG~ 326 (408)
+.......+||+.|.|.|+.. +++.-|..-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 345566788999999999996 34455555554
No 82
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=72.84 E-value=32 Score=33.42 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHHHhccCCchhhhhcCCcccceecch---hhHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCVYA 336 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~~Tlpv~lG~---~~a~~l~~~l 336 (408)
..+-..+||+-|+|-|++.. ++=|..-|+ +.+......+
T Consensus 50 ~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l 91 (279)
T PRK09573 50 CAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL 91 (279)
T ss_pred HHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence 44567889999999999764 555555553 4554444433
No 83
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=72.30 E-value=12 Score=36.34 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392 162 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (408)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (408)
+...+....||+.|+|.|+.++ +.-|..=|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 3445567899999999999764 566665554
No 84
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=71.43 E-value=13 Score=37.37 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhccccccccCCC-CCCccccc
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG 191 (408)
+..++...+...+||+.|+|.|+..+ +.-|+.=|
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 34456667777889999999999754 56666555
No 85
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=69.89 E-value=25 Score=34.65 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
+..++.+.+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 4556777777889999999999764 4777877665
No 86
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=69.88 E-value=98 Score=30.19 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhccch----HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc-C
Q 015392 107 VLLKKLHALYVFTRPFA----MIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK-V 181 (408)
Q Consensus 107 ~~~~~l~~y~~l~Rp~~----~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~-i 181 (408)
.....++.+.++.||.. .....++...+. -.......... .++.++......+......+.=.|+..++ .
T Consensus 8 ~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~l----~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~ 82 (289)
T COG0382 8 NKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLPSLKLLLL----AFLAFFLARSAGYVINDLADREIDRINPRTK 82 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCchHHHHHH----HHHHHHHHHHHhHHHHHHhhhhccCCCCCcc
Confidence 34567888999999975 344444444332 11111111111 13444556667777778888889998766 6
Q ss_pred CCC
Q 015392 182 NKP 184 (408)
Q Consensus 182 nkp 184 (408)
++|
T Consensus 83 ~RP 85 (289)
T COG0382 83 NRP 85 (289)
T ss_pred CCC
Confidence 776
No 87
>PRK08238 hypothetical protein; Validated
Probab=69.38 E-value=21 Score=37.82 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecch---hhHHHHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCVYALFF 339 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG~---~~a~~l~~~ll~~ 339 (408)
..+..++||+-|.|.|++.-+ +.=|..-|+ +.+..+..++..+
T Consensus 239 ~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~ 285 (479)
T PRK08238 239 ASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLA 285 (479)
T ss_pred HHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 445678999999999999743 444655554 4454444433333
No 88
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=69.34 E-value=26 Score=34.51 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecch
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG~ 326 (408)
..+-..+||+.|+|-|++..+ +.-|..-|+
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 344577899999999998765 567777775
No 89
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=69.31 E-value=36 Score=33.85 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=19.3
Q ss_pred HHHhccCCchhhhhcCCcccceecch
Q 015392 301 SLLKDIPDEDGDKQFGFQSISSKLGK 326 (408)
Q Consensus 301 ~~~~di~D~egD~~~G~~Tlpv~lG~ 326 (408)
..+||+.|+|-|+.. +++.|+.-|+
T Consensus 70 ~~iNd~~D~~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 70 VGLNQLTDIEIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HHHhhhhhHHHHhcC-CCCCCcCCcc
Confidence 338999999999964 5777776665
No 90
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=67.71 E-value=71 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=24.8
Q ss_pred HHHHHHhccCCchhhhhcCCcccceecch---hhHHHHHH
Q 015392 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCV 334 (408)
Q Consensus 298 ~~~~~~~di~D~egD~~~G~~Tlpv~lG~---~~a~~l~~ 334 (408)
.+...+||+-|+|.|+.. +++=|..-|+ +.+.....
T Consensus 51 ~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~is~~~a~~~~~ 89 (277)
T PRK12883 51 SGGNTINDYFDYEIDKIN-RPNRPLPRGAMSRKAALYYSL 89 (277)
T ss_pred HHHhHHHhhhhHhccccC-CCCCCCCCCccCHHHHHHHHH
Confidence 456789999999999975 4666766554 44444333
No 91
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=67.43 E-value=1.1e+02 Score=29.63 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=26.0
Q ss_pred HHHHHHHhccCCchhhhhcCCcccceecch---hhHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCVYA 336 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~~Tlpv~lG~---~~a~~l~~~l 336 (408)
..+...+||+-|.|-|+.. ++.=|..-|+ +.+......+
T Consensus 51 ~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~is~~~a~~~~~~l 92 (276)
T PRK12882 51 TGAGNAINDYFDREIDRIN-RPDRPIPSGAVSPRGALAFSILL 92 (276)
T ss_pred HHHHHHHHHHhhhcccccc-CCCCCcCCCCcCHHHHHHHHHHH
Confidence 4456789999999999964 3666766664 4444443333
No 92
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=66.19 E-value=49 Score=32.97 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhccccccccCC-CCCCcccccc
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~ 192 (408)
+..++.......++++.|+|.|+.. .|.-|..-|.
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3455566666777899999999864 5777877675
No 93
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=65.89 E-value=45 Score=32.87 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCC-CCCccccc
Q 015392 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG 191 (408)
..++.++-..+-.++.++.|+|.|+..+ +.-|+-=|
T Consensus 164 l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 164 IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 3446667777778999999999999765 55555444
No 94
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=65.30 E-value=98 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecc---hhhHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCV 334 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG---~~~a~~l~~ 334 (408)
..+-..+||+-|.|-|++..+ +.=|..-| .+.+.....
T Consensus 49 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (279)
T PRK12869 49 SGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGS 90 (279)
T ss_pred HHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHH
Confidence 455688999999999998654 33444444 455544433
No 95
>PRK11383 hypothetical protein; Provisional
Probab=65.13 E-value=74 Score=28.06 Aligned_cols=81 Identities=11% Similarity=0.232 Sum_probs=38.7
Q ss_pred HHHHHHheeccCCccccccc--CCCccchHHHHHHHHH-HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHH
Q 015392 226 IVWFLLGTAYSVDLPFLRWK--TKPFLAGMCMVTVFGL-VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSL 302 (408)
Q Consensus 226 ~~~~~l~~~Ys~~~PplrlK--r~~~~~~l~i~~~~g~-~~~~G~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
+.+++..+.|-. -.|-| ..+. .+..++..+.. +..++.+.++ +.+.+...+.-....+.++..+..++.+
T Consensus 49 ~lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~iG---LwNA~l~lsEKGfY~~af~lsLFgai~v 121 (145)
T PRK11383 49 VLGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMVG---LWNATLLLSEKGFYGLAFFLSLFGAVAV 121 (145)
T ss_pred HHHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHHH---HhcCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 345555555542 23333 3343 24445555533 2334444332 2344433333334444444333445678
Q ss_pred HhccCCchhhh
Q 015392 303 LKDIPDEDGDK 313 (408)
Q Consensus 303 ~~di~D~egD~ 313 (408)
-|++||...++
T Consensus 122 QKn~RD~~~~~ 132 (145)
T PRK11383 122 QKNIRDAGINP 132 (145)
T ss_pred Hhhhhhhhhcc
Confidence 89999995543
No 96
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=63.90 E-value=47 Score=32.86 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhccccccccCCC-CCCcccccc
Q 015392 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (408)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~ 192 (408)
++.++-+..-..+-.+.|+|.|+..+ |.-|..-|+
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 34555555555666777999998765 778887775
No 97
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=63.26 E-value=63 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=23.4
Q ss_pred HHHHHHhhhhhccccccccCCCC-CCcccccccCHHHH
Q 015392 162 LMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTG 198 (408)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~iS~~~a 198 (408)
+........|++-|+|.|+.+.+ .-|. ++.++.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 44566778899999999998754 3333 3445555
No 98
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=62.52 E-value=1.1e+02 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecc---hhhHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCVYA 336 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG---~~~a~~l~~~l 336 (408)
..+-..+||+-|.|-|++..+ +.=|+.-| ++.+..+...+
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l 100 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVL 100 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHH
Confidence 445678899999999998643 33344444 45554444333
No 99
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=59.75 E-value=63 Score=32.08 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecch---hhHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCVYA 336 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG~---~~a~~l~~~l 336 (408)
..+...+||+.|.|-|++..+ +.=|..-|+ +.+..+...+
T Consensus 60 ~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 60 VASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 445678899999999997655 244554554 4454444333
No 100
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=56.55 E-value=84 Score=30.51 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecc---hhhHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCVYA 336 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG---~~~a~~l~~~l 336 (408)
..+-..+||+-|.|-|++..+ +.=|..-| .+.+..+...+
T Consensus 48 ~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~ 91 (280)
T TIGR01473 48 AASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLL 91 (280)
T ss_pred HHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 445578899999999997543 33455444 45555444433
No 101
>PLN02878 homogentisate phytyltransferase
Probab=54.33 E-value=64 Score=31.75 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.2
Q ss_pred HHHhccCCchhhhhcCCcccceecch
Q 015392 301 SLLKDIPDEDGDKQFGFQSISSKLGK 326 (408)
Q Consensus 301 ~~~~di~D~egD~~~G~~Tlpv~lG~ 326 (408)
.-+||+.|+|-|+ .++...|+-=|+
T Consensus 40 vglNd~~D~EIDk-INkP~rPIpSG~ 64 (280)
T PLN02878 40 VGLNQLYDIEIDK-VNKPYLPLASGE 64 (280)
T ss_pred echhhhhhhcccc-cCCCCCCCCCCC
Confidence 3469999999994 669999998886
No 102
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=50.69 E-value=1.3e+02 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhccccccccCCC-CCCccccccc
Q 015392 159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDL 193 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~i 193 (408)
+.++..++-.++.+..|+|.|+..+ +.-|..-|.-
T Consensus 180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~ 215 (300)
T PRK12876 180 SFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEK 215 (300)
T ss_pred HHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCch
Confidence 3444444556677799999999765 5666655543
No 103
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=47.76 E-value=1.2e+02 Score=31.39 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhhcccccc
Q 015392 159 SAVLMNNYVGTVNQVADVEI 178 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~ 178 (408)
+.-++..--.++|++++.+.
T Consensus 113 a~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 113 LLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 44556667789999998764
No 104
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=40.49 E-value=2.7e+02 Score=27.46 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccccc
Q 015392 155 KALLSAVLMNNYVGTVNQVADVEI 178 (408)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~ 178 (408)
.++.+.-.+...-..+|+.+|.+.
T Consensus 110 ~lwtas~~~~al~~~lN~i~~~~~ 133 (303)
T COG1295 110 ALWTASNGMSALRDALNKIWRVKP 133 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334445555555677788777765
No 105
>PLN02776 prenyltransferase
Probab=37.57 E-value=4.5e+02 Score=26.63 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHHHHHhccCCchhhhhcCC-cccceecch---hhHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCV 334 (408)
Q Consensus 297 ~~~~~~~~di~D~egD~~~G~-~Tlpv~lG~---~~a~~l~~ 334 (408)
..+-..+||+-|.|-|++..+ +.=|..-|+ +.+..+..
T Consensus 42 ~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~ 83 (341)
T PLN02776 42 AASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAV 83 (341)
T ss_pred HHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 445678899999999988765 344555554 44544433
No 106
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=36.82 E-value=2.1e+02 Score=24.71 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=46.4
Q ss_pred chhhhHHHHHHHHHHHhhhccchH-----HHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 015392 101 STSFWDVLLKKLHALYVFTRPFAM-----IGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVAD 175 (408)
Q Consensus 101 ~~~~~~~~~~~l~~y~~l~Rp~~~-----~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D 175 (408)
.++++++....++......|-..- +..++...++..+... .+.+ +.+++.+++-...-.+|.-.+
T Consensus 8 ~~rl~~a~~ys~~Gl~~a~~~E~afR~e~~~~~~~i~~~~~l~~~---~~e~-------lll~~si~lvl~vEllNTAIE 77 (123)
T COG0818 8 FRRLIKAFGYSLKGLKAAWKEEAAFRQELLAALVALVLAFFLGVS---AIEW-------LLLILSIFLVLIVELLNTAIE 77 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCc---HHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888777777766664321 1122223334433311 1111 233456667777888999988
Q ss_pred cccccCCCCCCccc
Q 015392 176 VEIDKVNKPDLPLA 189 (408)
Q Consensus 176 ~e~D~inkp~RPl~ 189 (408)
.-.|++.+.+.|+.
T Consensus 78 a~VD~~s~e~hela 91 (123)
T COG0818 78 AVVDLISPEYHELA 91 (123)
T ss_pred HHHHHcccchhHHH
Confidence 88899877666654
No 107
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=35.22 E-value=1.9e+02 Score=23.23 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC
Q 015392 144 DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN 182 (408)
Q Consensus 144 ~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in 182 (408)
.+++.++.++....++..+...++..-|..+|...|++.
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 366667777778888888999999999999998877653
No 108
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=26.19 E-value=29 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCCchhhh----------hcCCcccceecch
Q 015392 296 ISAVMSLLKDIPDEDGDK----------QFGFQSISSKLGK 326 (408)
Q Consensus 296 ~~~~~~~~~di~D~egD~----------~~G~~Tlpv~lG~ 326 (408)
+..+..+.+|++|+.+|. +.|+.|+|+....
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~ 198 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILAR 198 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHH
Confidence 355668889999998887 8999999998873
No 109
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.84 E-value=2.8e+02 Score=21.57 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Q 015392 325 GKENVLRLCVYALFFAYGVSVIVGASSS-FQLVKLVSIIGHSTL 367 (408)
Q Consensus 325 G~~~a~~l~~~ll~~ay~~~~~~~~~~~-~~~~~~~~~~~~~il 367 (408)
|+|.+-.+...++.+..+++.+.|.... +......+++|.++.
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~ 48 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLT 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665433 333333444444443
No 110
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.67 E-value=5e+02 Score=22.77 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=26.9
Q ss_pred hhccccccccCCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhChhHHHHH
Q 015392 171 NQVADVEIDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFG 224 (408)
Q Consensus 171 Nd~~D~e~D~ink--p~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~~lg~~~l~~~ 224 (408)
++.-.+.+|+... .+..=.-|-.||.+-+-+.+...+.-+.++...++|.+.++
T Consensus 60 rr~~~rPED~~daEI~dgAGe~GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG 115 (137)
T PF12270_consen 60 RRIGPRPEDREDAEIADGAGELGFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIG 115 (137)
T ss_pred hhCCCCCccccccccccCCCCcCcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443345666533 23333446778877766555444333333444444544443
No 111
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.76 E-value=3e+02 Score=23.23 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=23.3
Q ss_pred cccCCCCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Q 015392 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIAL 214 (408)
Q Consensus 178 ~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~~ 214 (408)
-||.|+ .|.+=+-++..|.+..+.+..++++.++.
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g~ 39 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLGL 39 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHHH
Confidence 477775 35555668888988877766666655543
No 112
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.88 E-value=1.3e+02 Score=21.38 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhhcccccccc
Q 015392 159 SAVLMNNYVGTVNQVADVEIDK 180 (408)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~ 180 (408)
...+.-.+..++|.+.|.++|=
T Consensus 13 v~~Cl~lyl~ald~~CDQg~~F 34 (47)
T PRK10299 13 VLACLLLWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHHHHHHHhcCCccc
Confidence 3345557888999999998764
Done!