Query 015392
Match_columns 408
No_of_seqs 276 out of 2070
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdc_A Diacylglycerol kinase; 30.8 2.2E+02 0.0074 23.2 9.7 80 101-190 7-91 (121)
2 3kra_B Geranyl diphosphate syn 27.8 92 0.0032 29.0 6.1 44 298-341 74-117 (274)
3 2nx7_A Nematocyst outer WALL a 25.1 11 0.00038 22.1 -0.6 13 16-28 4-16 (28)
4 3m0g_A Farnesyl diphosphate sy 24.1 53 0.0018 31.1 3.6 42 295-336 207-259 (297)
5 3lsn_A Geranyltranstransferase 20.4 33 0.0011 32.7 1.3 42 295-336 214-266 (304)
6 3lom_A Geranyltranstransferase 19.9 33 0.0011 32.8 1.2 41 296-336 222-273 (313)
7 3ts7_A Geranyltranstransferase 19.1 32 0.0011 33.1 0.9 41 296-336 221-272 (324)
8 3p8r_A Geranyltranstransferase 17.1 38 0.0013 32.1 0.9 38 297-334 222-270 (302)
9 4f62_A Geranyltranstransferase 15.7 48 0.0016 31.7 1.3 41 296-336 214-265 (317)
10 2h8o_A Geranyltranstransferase 15.4 36 0.0012 32.9 0.3 54 156-212 110-165 (335)
No 1
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=30.85 E-value=2.2e+02 Score=23.18 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=47.2
Q ss_pred chhhhHHHHHHHHHHHhhhccchHHHH-----HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 015392 101 STSFWDVLLKKLHALYVFTRPFAMIGT-----IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVAD 175 (408)
Q Consensus 101 ~~~~~~~~~~~l~~y~~l~Rp~~~~~~-----~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D 175 (408)
.+++++++...++......|-..-+-. ++....|..+. .+...|. .++..+.+-...-.+|.-.+
T Consensus 7 ~~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~---~s~~e~~-------~li~~i~lVl~~EllNTAIE 76 (121)
T 2kdc_A 7 FTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLD---VDAITRV-------LLISSVMLVMIVEILNSAIE 76 (121)
T ss_dssp HHHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCC---CCCSHHH-------HHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh---CCHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888777764432222 22222333322 2222332 12234556666788999999
Q ss_pred cccccCCCCCCcccc
Q 015392 176 VEIDKVNKPDLPLAS 190 (408)
Q Consensus 176 ~e~D~inkp~RPl~s 190 (408)
.-.|++.+.+.|+..
T Consensus 77 ~vvD~v~~e~h~lak 91 (121)
T 2kdc_A 77 AVVDRIGSEYHELSG 91 (121)
T ss_dssp HHHTTCCCCSCTTSH
T ss_pred HHHHHcCCccCHHHH
Confidence 889998877888764
No 2
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=27.84 E-value=92 Score=28.95 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHHH
Q 015392 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 341 (408)
Q Consensus 298 ~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay 341 (408)
.+..+-.|+++.++|.+.|+.|.=.++|...+....-.++..++
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 34456789994445667999999999999888665555554444
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=25.07 E-value=11 Score=22.09 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=9.9
Q ss_pred cccccCcCCCCCC
Q 015392 16 YYPLQHAGCDKTL 28 (408)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (408)
-|++||.||..+-
T Consensus 4 pcslqqpgcssac 16 (28)
T 2nx7_A 4 PCSLQQPGCSSAC 16 (28)
T ss_dssp THHHHSTTCCGGG
T ss_pred CccccCCCccccc
Confidence 4789999997643
No 4
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=24.08 E-value=53 Score=31.05 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=24.8
Q ss_pred HHHHHHHHHhccCCchh-----------hhhcCCcccceecchhhHHHHHHHH
Q 015392 295 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 295 ~~~~~~~~~~di~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....-+
T Consensus 207 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 259 (297)
T 3m0g_A 207 ALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADL 259 (297)
T ss_dssp HHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 34566788899999865 6678999999999998887654433
No 5
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=20.44 E-value=33 Score=32.68 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccCCchh-----------hhhcCCcccceecchhhHHHHHHHH
Q 015392 295 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 295 ~~~~~~~~~~di~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....-+
T Consensus 214 ~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 214 AIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 34556677788888765 6678999999999999887655443
No 6
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=19.90 E-value=33 Score=32.78 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHhccCCchh-----------hhhcCCcccceecchhhHHHHHHHH
Q 015392 296 ISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 296 ~~~~~~~~~di~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....-+
T Consensus 222 lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~ 273 (313)
T 3lom_A 222 IGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVH 273 (313)
T ss_dssp HHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 3455667777777654 6788999999999999887654433
No 7
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=19.09 E-value=32 Score=33.09 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHHHHhccCCch-----------hhhhcCCcccceecchhhHHHHHHHH
Q 015392 296 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 296 ~~~~~~~~~di~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....-.
T Consensus 221 lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 345556667776664 47788999999999999887655433
No 8
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=17.12 E-value=38 Score=32.14 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHhccCCch-----------hhhhcCCcccceecchhhHHHHHH
Q 015392 297 SAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCV 334 (408)
Q Consensus 297 ~~~~~~~~di~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 334 (408)
.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 222 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 222 GLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp HHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 44556666666654 467889999999999988866543
No 9
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=15.73 E-value=48 Score=31.72 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHHHhccCCch-----------hhhhcCCcccceecchhhHHHHHHHH
Q 015392 296 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCVYA 336 (408)
Q Consensus 296 ~~~~~~~~~di~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~~l 336 (408)
+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.+...+.-.
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 265 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRL 265 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 345566777777764 46778999999999999887665444
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=15.41 E-value=36 Score=32.87 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhhc--cccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 015392 156 ALLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~--~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l 212 (408)
+..+.=++|.+.-+..|+ .|-+.=| +.+|-.........++..+=.++..++-+
T Consensus 110 ~A~aiEliH~asLIHDDiPamD~s~~R---RG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 165 (335)
T 2h8o_A 110 VGAALECLHCYSLVHDDLPAMDDDDLR---RGQPTVHRKFDEATAILAGDSLLTLAFDI 165 (335)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEE---TTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhccCCCcC---CCCCcHhhhcChHHHHHHHHHHHHHHHHH
Confidence 334566889999999999 7765433 34454444555666655554444444433
Done!