Query 015392
Match_columns 408
No_of_seqs 276 out of 2070
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 11:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 66.1 34 0.0025 29.7 12.5 56 157-213 67-122 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 24.5 32 0.0023 30.0 4.5 45 297-341 77-122 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 17.9 51 0.0037 28.5 4.3 45 297-341 74-119 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 13.0 20 0.0015 31.5 0.0 57 155-212 68-124 (299)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 10.8 2.4E+02 0.017 22.3 6.5 13 161-173 105-117 (199)
6 d2j7ja2 g.37.1.1 (A:29-57) Tra 9.8 35 0.0025 19.0 0.3 14 20-33 7-20 (29)
7 d1v4ea_ a.128.1.1 (A:) Octopre 7.9 86 0.0063 26.8 2.4 42 298-340 67-108 (280)
8 d1omca_ g.3.6.1 (A:) Conotoxin 7.7 67 0.0049 17.2 0.9 8 71-78 16-23 (27)
9 d1iwga8 f.35.1.1 (A:513-566,A: 6.6 5.5E+02 0.04 20.2 7.8 21 156-176 118-138 (222)
10 d1te7a_ b.122.1.7 (A:) Hypothe 5.1 1.1E+02 0.0082 22.3 1.3 16 309-324 12-27 (103)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=66.12 E-value=34 Score=29.71 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 015392 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213 (408)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l~ 213 (408)
..+.=++|.+.-+..|+.|.+.|.. ++.+|-.........+...+-.+...++-+.
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 3466789999999999988776543 3455555555566666666555555554443
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=24.52 E-value=32 Score=30.04 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCchh-hhhcCCcccceecchhhHHHHHHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDG-DKQFGFQSISSKLGKENVLRLCVYALFFAY 341 (408)
Q Consensus 297 ~~~~~~~~di~D~eg-D~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay 341 (408)
-.+..+..|++|.+. |.+.|..|.-..+|...+....-.++..++
T Consensus 77 H~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 334556689998887 589999999999999988766555544444
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=17.88 E-value=51 Score=28.48 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=32.8
Q ss_pred HHHHHHHhccCCchhh-hhcCCcccceecchhhHHHHHHHHHHHHH
Q 015392 297 SAVMSLLKDIPDEDGD-KQFGFQSISSKLGKENVLRLCVYALFFAY 341 (408)
Q Consensus 297 ~~~~~~~~di~D~egD-~~~G~~Tlpv~lG~~~a~~l~~~ll~~ay 341 (408)
-.+..+..|++|+++| .+.|+.|.-.++|...+....-.++..++
T Consensus 74 H~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 74 HTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 3345566899988775 68999999999999988766554444443
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=13.00 E-value=20 Score=31.48 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccCCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 015392 155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (408)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~iS~~~a~~~~~~~~~l~l~l 212 (408)
-+..+.=++|.+.-+..|+.|.+.|.. ++.+|-.-.+.....|...+-.+...++-+
T Consensus 68 ~~A~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 68 APAAAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 344577789999999999998775532 234444444455566666555555444443
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.85 E-value=2.4e+02 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=5.2
Q ss_pred HHHHHHHhhhhhc
Q 015392 161 VLMNNYVGTVNQV 173 (408)
Q Consensus 161 ~l~~~a~~~iNd~ 173 (408)
.....+.+...++
T Consensus 105 i~vd~~i~i~~~~ 117 (199)
T d1iwga7 105 LLVDDAIVVVENV 117 (199)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHH
Confidence 3333344444443
No 6
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=9.83 E-value=35 Score=19.02 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=11.1
Q ss_pred cCcCCCCCCCCccc
Q 015392 20 QHAGCDKTLQLPLT 33 (408)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (408)
.|.|||+.-.+|-+
T Consensus 7 ~hegcdk~fs~ps~ 20 (29)
T d2j7ja2 7 PHEGCDKRFSLPSR 20 (29)
T ss_dssp CSTTCCCEESSHHH
T ss_pred CccCccccccCHHH
Confidence 48999998888754
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=7.95 E-value=86 Score=26.76 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHHHHHhccCCchhhhhcCCcccceecchhhHHHHHHHHHHHH
Q 015392 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (408)
Q Consensus 298 ~~~~~~~di~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ll~~a 340 (408)
.+..+..|+.| ++|.+.|..|.-..+|...+....-.++..+
T Consensus 67 ~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 67 LASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 34455677777 5678999999999999988866554444433
No 8
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=7.75 E-value=67 Score=17.22 Aligned_cols=8 Identities=38% Similarity=1.298 Sum_probs=4.5
Q ss_pred CCCCCCCc
Q 015392 71 SRNCKPFN 78 (408)
Q Consensus 71 ~~~~~~~~ 78 (408)
|+.+||+.
T Consensus 16 crscnpyt 23 (27)
T d1omca_ 16 CRSCNPYT 23 (27)
T ss_dssp SSCEETTT
T ss_pred hcccCccc
Confidence 56666544
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=5.5e+02 Score=20.19 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhhcccc
Q 015392 156 ALLSAVLMNNYVGTVNQVADV 176 (408)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~ 176 (408)
.++.+.....+....+++.+.
T Consensus 118 i~l~Gi~v~~~i~~~~~~~~~ 138 (222)
T d1iwga8 118 LTTIGLSAKNAILIVEFAKDL 138 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHhccc
Confidence 334455556666666666554
No 10
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=5.13 E-value=1.1e+02 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.3
Q ss_pred chhhhhcCCcccceec
Q 015392 309 EDGDKQFGFQSISSKL 324 (408)
Q Consensus 309 ~egD~~~G~~Tlpv~l 324 (408)
.|.|..+|+||+.++=
T Consensus 12 fe~dIlsGkKTITIRD 27 (103)
T d1te7a_ 12 FQDDILAGRKTITIRD 27 (103)
T ss_dssp HHHHHHTCCCEEEEEC
T ss_pred hhHHHhcCCceEEecc
Confidence 4789999999998763
Done!