BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015393
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 341 RRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380
R+ + RC C +YC R CQ W L HK +CA +++
Sbjct: 58 RQEKLHRCGQCKFAHYCDRTCQKDAW-LNHKNECAAIKKY 96
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 340 TRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA----ERW 380
TR+ +C C YC+ CQ DW + HK +C+P E W
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSPMVVFGENW 100
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 340 TRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA----ERW 380
TR+ +C C YC+ CQ DW + HK +C+P E W
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSPMVVFGENW 100
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 340 TRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA----ERW 380
TR+ +C C YC+ CQ DW + HK +C+P E W
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSPMVVFGENW 100
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And Bs69
Mynd Domains
Length = 47
Score = 32.0 bits (71), Expect = 0.69, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 331 SHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367
S V CGR C+ C VNYCS CQ DWK
Sbjct: 6 SCVNCGR-----EAMSECTGCHKVNYCSTFCQRKDWK 37
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 32.0 bits (71), Expect = 0.69, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 331 SHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367
S V CGR C+ C VNYCS CQ DWK
Sbjct: 11 SCVNCGR-----EAMSECTGCHKVNYCSTFCQRKDWK 42
>pdb|3PIQ|H Chain H, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|A Chain A, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|C Chain C, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|E Chain E, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|G Chain G, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|J Chain J, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
Length = 231
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 107 SKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS 166
SK + ++ N+ F D G+ + Y LG FY + G G ++ +A S+
Sbjct: 75 SKNSLYLQMNSLKTEDTAFYFCAKDKGDSDYDYNLGYSYFYYMDGWGKGTTVTVSSA-ST 133
Query: 167 HAQALYSLAVIQFNGSGGS 185
+++ LA + SGG+
Sbjct: 134 KGPSVFPLAPSSKSTSGGT 152
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 112 AIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHA 168
+ K +++++ F K C D C+ LG++ + +N AS AKA +++
Sbjct: 16 SYKEKDFTQAKKYFEKAC-DLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS 74
Query: 169 QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIA 228
+ L + ++G G S+N + ++A L + + LG DG V ++
Sbjct: 75 NGCHLLGNLYYSGQGVSQN---TNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFK 131
Query: 229 EGRRFLVQA 237
+ + +A
Sbjct: 132 KAVEYFTKA 140
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 16/77 (20%)
Query: 149 LQNRGSGASLMAKAAISSHAQAL--------YSLAVIQFNGSGGSKNDK----DLRAGVA 196
+ + G GA+ K A++ +++A ++L +Q+NG G ++N+K + + G
Sbjct: 191 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250
Query: 197 LCARAAFLGHIDALREL 213
L A+ A D L++L
Sbjct: 251 LGAKGA----CDILKQL 263
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
V C R + + RCS C YCS CQ W HK +C
Sbjct: 49 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKREC 89
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
V C R + + RCS C YCS CQ W HK +C
Sbjct: 47 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKREC 87
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
V C R + + RCS C YCS CQ W HK +C
Sbjct: 83 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKREC 123
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
V C R + + RCS C YCS CQ W HK +C
Sbjct: 48 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKREC 88
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
V C R + + RCS C YCS CQ W HK +C
Sbjct: 47 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKREC 87
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
V C R + + RCS C YCS CQ W HK +C
Sbjct: 48 VVCDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWP-DHKREC 88
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 341 RRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375
R+ +C C YC CQ DW L HK +C+
Sbjct: 58 RKEGLSKCGRCKQAFYCDVECQKEDWPL-HKLECS 91
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRH 370
CGR + CS C YC CQ DW+ H
Sbjct: 23 CGRKASET-----CSGCNTARYCGSFCQHKDWEKHH 53
>pdb|1OAD|A Chain A, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
pdb|1OAD|B Chain B, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
Length = 388
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 233 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 281
>pdb|1GW9|A Chain A, Tri-Iodide Derivative Of Xylose Isomerase From
Streptomyces Rubiginosus
pdb|1XIB|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIC|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XID|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIE|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIF|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIG|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XIH|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XII|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIJ|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|8XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
pdb|9XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
Length = 388
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 233 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 281
>pdb|1MNZ|A Chain A, Atomic Structure Of Glucose Isomerase
pdb|2GLK|A Chain A, High-Resolution Study Of D-Xylose Isomerase, 0.94a
Resolution.
pdb|2GUB|A Chain A, Crystal Structure Of Metal Free D-Xylose Isomerase.
pdb|2GVE|A Chain A, Time-Of-Flight Neutron Diffraction Structure Of D-Xylose
Isomerase
pdb|3CWH|A Chain A, D-Xylose Isomerase In Complex With Linear Product,
Per-Deuterated Xylulose
pdb|3KBM|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase
Complexed With 2cd(2+) Co-Factors And
D12-D-Alpha-Glucose In The Cyclic Form
pdb|3KBN|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors And D12-D-Glucose In The
Linear Form
pdb|3KBS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2cd(2+) Co-Factors
pdb|3KBV|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors
pdb|3KBW|A Chain A, Room Temperature X-Ray Mixed-Metal Structure Of D-Xylose
Isomerase In Complex With Ni(2+) And Mg(2+) Co-Factors
pdb|3KBJ|A Chain A, Room Temperature X-Ray Structure Of Apo-D-Xylose Isomerase
pdb|3QYS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 0.6ni2+ Cation Bound In M2 Metal Binding
Site At Ph5.8
pdb|3QZA|A Chain A, Joint Neutron And X-Ray Structure Of Apo-D-Xylose
Isomerase At Ph5.9
pdb|3U3H|A Chain A, X-Ray Crystallographic Analysis Of D-Xylose
Isomerase-Catalyzed Isomerization Of (R)-Glyceraldehyde
pdb|4A8I|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8L|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8R|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8N|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|3KCL|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Cd2+ Cations And D12-D-Alpha-Glucose
In The Ring Form (Refined Jointly With X-Ray Structure
3kbm)
pdb|4E3V|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Rubiginosus Cryoprotected In Proline
pdb|4DUO|A Chain A, Room-Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2mg2+ Ions And Xylitol At Ph 7.7
pdb|4DVO|A Chain A, Room-Temperature Joint X-RayNEUTRON STRUCTURE OF D-Xylose
Isomerase In Complex With 2ni2+ And Per-Deuterated
D-Sorbitol At Ph 5.9
Length = 388
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 233 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 281
>pdb|6XIA|A Chain A, Refinement Of Glucose Isomerase From Streptomyces Albus At
1.65 Angstroms With Data From An Imaging Plate
Length = 387
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 280
>pdb|1S5N|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
Length = 386
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGH 215
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGY 279
>pdb|3GNX|A Chain A, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
pdb|3GNX|E Chain E, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
Length = 387
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 280
>pdb|1S5M|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
pdb|1MUW|A Chain A, The 0.86 Angstrom Structure Of Xylose Isomerase
Length = 386
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGH 215
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGY 279
>pdb|3KCO|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Ni2+ Cations And D12-D-Glucose In
The Linear Form (Refined Jointly With X-Ray Structure
3kbn)
pdb|3KCJ|A Chain A, Room Temperature Neutron Structure Of Apo-D-Xylose
Isomerase (Refined Jointly With X-Ray Structure 3kbj)
Length = 388
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 233 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 281
>pdb|1O1H|A Chain A, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|1O1H|B Chain B, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|2G4J|A Chain A, Anomalous Substructure Of Glucose Isomerase
pdb|1XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|2XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|4XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3N4A|A Chain A, Crystal Structure Of D-Xylose Isomerase In Complex With
S-1,2- Propandiol
Length = 387
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGYS 280
>pdb|1XYA|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYA|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|2GYI|A Chain A, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
pdb|2GYI|B Chain B, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
Length = 386
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGH 215
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGY 279
>pdb|1XYL|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYL|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
Length = 386
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 168 AQALYS--LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGH 215
AQAL++ L I NG G K D+DLR G RAAF +D L G+
Sbjct: 232 AQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDL-RAAFW-LVDLLESAGY 279
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 253 GISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFL 312
G S R WL S P ++NG+VTGI L+SD + A + H F
Sbjct: 59 GNSVRVWLHIEGESTP---------EFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFF 109
Query: 313 AEWFAA 318
W A
Sbjct: 110 TLWNGA 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,009,948
Number of Sequences: 62578
Number of extensions: 546256
Number of successful extensions: 1242
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 37
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)