BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015393
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1
SV=1
Length = 379
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/354 (74%), Positives = 293/354 (82%), Gaps = 22/354 (6%)
Query: 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIK 114
+DL D++PDDLV+SILCKL ST+RCP+DF+NVL+TCKR+ GLA+N +VLS+ S K A+K
Sbjct: 41 ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100
Query: 115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSL 174
A+NWSE +HRFLK C DAG++EACYTLGMIRFYCLQNRG+GASLMAKAAISSHA ALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160
Query: 175 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFL 234
AVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGV QN++EGRRFL
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220
Query: 235 VQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLS 294
VQANARELAAVLSS GI RS TW LSQP P PNH CPLLS
Sbjct: 221 VQANARELAAVLSS----GIQARS--TWLSLSQPPPP-----VVPNHGQQT----CPLLS 265
Query: 295 DFGCNVPAPEAHPASRFLAEWFAARGGT-PGPGLRLCSHVGCGRPETRRHEFRRCSVCGA 353
DFGCNVPAPE HPA+RFLA+WFA RGG PG GLRLCSH GCGRPETR+HEFRRCSVCG
Sbjct: 266 DFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGV 325
Query: 354 VNYCSRACQALDWKLRHKADCAPAERWLDE--EGNGDVDVDLNDAEGGGEDNVV 405
VNYCSRACQALDWKLRHK DCAP +RWL+E G G+V +D N G DNV+
Sbjct: 326 VNYCSRACQALDWKLRHKMDCAPVQRWLEEGDGGEGNVQIDGN----GNGDNVL 375
>sp|Q9FK27|FB342_ARATH F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2
SV=1
Length = 336
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/346 (56%), Positives = 244/346 (70%), Gaps = 38/346 (10%)
Query: 58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANN 117
F+ L DDL++SIL KL+++A PSDF+ VL TCKR+N L L+ LVLSKA +T A+ A
Sbjct: 22 FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81
Query: 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVI 177
WS+S+H+FLKLC +AGN++A Y+LGMIRFYCLQN SGASLMAKAAI SHA ALYSL+VI
Sbjct: 82 WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141
Query: 178 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
QFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV ++++EGRR L+QA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201
Query: 238 NARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFG 297
NARELA S RS+L+ ++ + N +T +
Sbjct: 202 NARELAC----------SLRSYLSL--------------KSGDENETLTDLSV------- 230
Query: 298 CNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYC 357
VP E HP +RFL EWF++ GLR+CSH GCGRPETR HEFRRCSVCG VNYC
Sbjct: 231 --VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYC 288
Query: 358 SRACQALDWKLRHKADCAPAERWLDEEGN-GD----VDVDLNDAEG 398
SR CQALDW+ +HK +C P + W+ GD V V+++D G
Sbjct: 289 SRGCQALDWRAKHKVECTPLDLWVAAAAEIGDDGEAVAVEIDDNHG 334
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana
GN=UBP16 PE=2 SV=1
Length = 1008
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 347 RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEG 398
RCS C AV YCS CQ + W+ HK +C PA D E D D+ L + G
Sbjct: 84 RCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYDSEDESDSDLRLGEENG 135
>sp|A5PLI4|LR2BP_DANRE LRP2-binding protein OS=Danio rerio GN=lrp2bp PE=2 SV=1
Length = 343
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQF 179
E LK A+ G+ +A + LG + + +Q + A L+ QALY LAVI +
Sbjct: 43 EKTMNLLKEKAETGDSQATFLLGQLHY--VQGCYAEAELIFDRIKDKDPQALYQLAVIYY 100
Query: 180 NGSGGSKNDKDLRAGVALCARAAFLGHID-------ALRELGHCLQDGYGVRQNIAEGRR 232
+G G +DL V R AF + AL LG +G+GV+ + +E R
Sbjct: 101 DGLG---TKEDLGRAVEYMGRVAFWDSSEAGSVRYAALYNLGQAYLEGFGVQASSSEAER 157
Query: 233 FLVQA 237
+ A
Sbjct: 158 LWLLA 162
>sp|Q2YDC9|PDCD2_BOVIN Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1
Length = 344
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 24/101 (23%)
Query: 275 RNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVG 334
RNQ P N DF P E P+ + + + G LC G
Sbjct: 97 RNQLPRQN------------DFYSYEPPSEDPPSETGESVYLHLKSGA-----HLCRVCG 139
Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375
C P +RCS C +YCS+ Q+LDW+L HK CA
Sbjct: 140 CSGP-------KRCSRCHKAHYCSKEHQSLDWRLGHKQACA 173
>sp|Q9ZG88|PODJ_CAUCR Localization factor PodJL OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=podJ PE=1 SV=2
Length = 974
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 161 KAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 220
+AA +A+++LA+ F G GG +N + +AA +G +D+ L + G
Sbjct: 787 RAANGGDPRAMHNLALYYFKGEGGPRNST---TAASWFRKAADMGLVDSQFNLAQLYESG 843
Query: 221 YGVRQNIAEGRRFLVQA------NARELAAVLSS---AACQGISTRSWLTWNPLSQ 267
GV QN AE ++ V A AR A L S A Q + RS L + P +Q
Sbjct: 844 LGVSQNPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTADRSALAFRPQTQ 899
>sp|B8GXA0|PODJ_CAUCN Localization factor PodJL OS=Caulobacter crescentus (strain NA1000
/ CB15N) GN=podJ PE=2 SV=1
Length = 974
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 161 KAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 220
+AA +A+++LA+ F G GG +N + +AA +G +D+ L + G
Sbjct: 787 RAANGGDPRAMHNLALYYFKGEGGPRNST---TAASWFRKAADMGLVDSQFNLAQLYESG 843
Query: 221 YGVRQNIAEGRRFLVQA------NARELAAVLSS---AACQGISTRSWLTWNPLSQ 267
GV QN AE ++ V A AR A L S A Q + RS L + P +Q
Sbjct: 844 LGVSQNPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTADRSALAFRPQTQ 899
>sp|O94486|CHR2_SCHPO Chitin synthase regulatory factor 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=chr2 PE=3 SV=1
Length = 512
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQN 226
+++ALY LAV G+G + + + + L AA L H+ A + CLQ G+GV QN
Sbjct: 223 YSEALYLLAVCY--GTGALRTEINEKEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQN 280
Query: 227 IAEGRRFLVQA 237
E + +A
Sbjct: 281 TEEAIHYFFRA 291
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 110 TFAIKANNWSESAHRFLKLCADAGNVEACYTLGM---IRFYCLQNRGSGASLMAKAAISS 166
T A++ + A+R K+ AD +V+A Y + + + F QN +AA
Sbjct: 236 TGALRTEINEKEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQNTEEAIHYFFRAASGQ 295
Query: 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQD 219
H A++ +A+I F G K D ++A L LG ++A E L D
Sbjct: 296 HVGAMHRMALIYFRGLMSVKRDP-VKAMYYLN-----LGALEADHEFPQALYD 342
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana
GN=UBP17 PE=2 SV=1
Length = 731
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 347 RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEG 398
RCS C +V YCS CQ L W+ HK +C + DEE V D + E
Sbjct: 67 RCSQCKSVRYCSSKCQILHWRRGHKEECRSPD--YDEEKEEYVQSDYDAKES 116
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana
GN=UBP15 PE=2 SV=2
Length = 924
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 347 RCSVCGAVNYCSRACQALDWKLRHKADCAP 376
RCS C +V YCS CQ + W++ HK +C P
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVP 169
>sp|Q9FXC7|FB79_ARATH Putative F-box protein At1g67623 OS=Arabidopsis thaliana
GN=At1g67623 PE=4 SV=1
Length = 296
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANN 117
D+LP+DL+V I + A S N+ + K + V + S K I+
Sbjct: 24 LDSLPEDLLVEI--SSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLK--EIEFLP 79
Query: 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVI 177
W E++ +F++ C ++ N EA + G I ++ + + G +A+AA +A Y VI
Sbjct: 80 WHENSAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVI 139
Query: 178 QFNGSGGSKN 187
G +K
Sbjct: 140 LICLGGKTKQ 149
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana
GN=UBP19 PE=2 SV=2
Length = 672
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
CG+ T++ CS C +V YCS ACQ DWK HK C
Sbjct: 67 CGKATTKK-----CSRCKSVRYCSAACQTSDWKSGHKLKC 101
>sp|O42631|MUB1_EMENI MYND-type zinc finger protein samB OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=samB PE=3 SV=1
Length = 590
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375
G+R C++ CG+ E +F +C C YCS+ CQ W L H+ CA
Sbjct: 540 GIRQCANYKCGKWEEFTRQFAKCRRCRRTKYCSKDCQKAAW-LYHRHWCA 588
>sp|Q03162|MUB1_YEAST MYND-type zinc finger protein MUB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MUB1 PE=1 SV=1
Length = 620
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E +F +C C YCSR CQ W
Sbjct: 508 GVRQCANFSCGKWEDFPRQFAKCRRCKRTKYCSRKCQLKAW 548
>sp|Q09415|SET14_CAEEL SET domain-containing protein 14 OS=Caenorhabditis elegans
GN=set-14 PE=4 SV=2
Length = 429
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
C + T E ++CS C + YCS+ CQ DWKL HK +C
Sbjct: 26 CNQCLTSMAELKKCSACRRLAYCSQECQRADWKL-HKVEC 64
>sp|Q16342|PDCD2_HUMAN Programmed cell death protein 2 OS=Homo sapiens GN=PDCD2 PE=1 SV=2
Length = 344
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375
G LC GC P+T CS C YCS+ Q LDW+L HK CA
Sbjct: 131 GAHLCRVCGCLGPKT-------CSRCHKAYYCSKEHQTLDWRLGHKQACA 173
>sp|Q0CW83|MUB1_ASPTN MYND-type zinc finger protein samB OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=samB PE=3 SV=1
Length = 603
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 552 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 592
>sp|P46718|PDCD2_MOUSE Programmed cell death protein 2 OS=Mus musculus GN=Pdcd2 PE=2 SV=2
Length = 343
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAER 379
G LC GC P T CS C +YCS+ Q LDW+L HK C +++
Sbjct: 130 GAHLCRVCGCLAPMT-------CSRCKQAHYCSKEHQTLDWRLGHKQACTQSDK 176
>sp|A2RA63|MUB1_ASPNC MYND-type zinc finger protein samB OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=samB PE=3 SV=1
Length = 605
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 554 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 594
>sp|Q4WVI6|MUB1_ASPFU MYND-type zinc finger protein samB OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=samB
PE=3 SV=1
Length = 605
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 554 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 594
>sp|B0Y1D1|MUB1_ASPFC MYND-type zinc finger protein samB OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=samB PE=3 SV=1
Length = 605
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 554 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 594
>sp|A1DDX0|MUB1_NEOFI MYND-type zinc finger protein samB OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=samB
PE=3 SV=1
Length = 606
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 555 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 595
>sp|Q2U685|MUB1_ASPOR MYND-type zinc finger protein samB OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=samB PE=3 SV=1
Length = 605
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 554 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 594
>sp|B8NKS1|MUB1_ASPFN MYND-type zinc finger protein samB OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=samB PE=3 SV=1
Length = 605
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E + +F +C C YCS+ CQ W
Sbjct: 554 GIRQCAYYKCGKWEEFQRQFAKCRRCRRTKYCSKDCQKAAW 594
>sp|A1CBG9|MUB1_ASPCL MYND-type zinc finger protein samB OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=samB PE=3 SV=1
Length = 597
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDW 366
G+R C++ CG+ E +F +C C YCS+ CQ W
Sbjct: 546 GIRQCAYYKCGKWEETARQFAKCRRCRRTKYCSKDCQKAAW 586
>sp|P47816|PDCD2_RAT Programmed cell death protein 2 OS=Rattus norvegicus GN=Pdcd2 PE=2
SV=2
Length = 343
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375
G LC GC P T CS C +YCS+ Q LDW+L HK C
Sbjct: 130 GAHLCRVCGCLAPMT-------CSRCKQAHYCSKEHQTLDWQLGHKQACT 172
>sp|P87311|MUB1_SCHPO MYND-type zinc finger protein C31F10.10c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC31F10.10c PE=3
SV=1
Length = 574
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 292 LLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVC 351
L+ F P+ +R + + + + G G+R C+++ C + E +F +C C
Sbjct: 443 LVEQFTLKFYPPQVQYWARAIMNNYCRKDESHG-GIRRCANLLCNKWEEHSRQFAKCRRC 501
Query: 352 GAVNYCSRACQALDW 366
YCS+ CQ W
Sbjct: 502 RRTKYCSKECQHQAW 516
>sp|Q8IV38|ANKY2_HUMAN Ankyrin repeat and MYND domain-containing protein 2 OS=Homo sapiens
GN=ANKMY2 PE=1 SV=1
Length = 441
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 346 RRCSVCGAVNYCSRACQALDWKLRHKADC------------APAERWLDEEGNGDVDVDL 393
+RCSVC V YC + CQ W HK C A+ EE +G +DV+
Sbjct: 330 KRCSVCKMVIYCDQTCQKTHW-FTHKKICKNLKDIYEKQQLEAAKEKRQEENHGKLDVNS 388
Query: 394 N 394
N
Sbjct: 389 N 389
>sp|O94256|SET6_SCHPO SET domain and MYND-type zinc finger protein 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=set6 PE=4 SV=1
Length = 483
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
C + + +RC+ C ++YCS+ CQ DW HK +C
Sbjct: 49 CSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPF-HKLEC 87
>sp|Q8NB12|SMYD1_HUMAN SET and MYND domain-containing protein 1 OS=Homo sapiens GN=SMYD1
PE=2 SV=1
Length = 490
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 341 RRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380
R+ + RC C +YC R CQ W L HK +C+ +R+
Sbjct: 58 RQEKLHRCGQCKFAHYCDRTCQKDAW-LNHKNECSAIKRY 96
>sp|P97443|SMYD1_MOUSE SET and MYND domain-containing protein 1 OS=Mus musculus GN=Smyd1
PE=1 SV=3
Length = 490
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 341 RRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380
R+ + RC C +YC R CQ W L HK +CA +++
Sbjct: 58 RQEKLHRCGQCKFAHYCDRTCQKDAW-LNHKNECAAIKKY 96
>sp|Q0VCS9|ANKY2_BOVIN Ankyrin repeat and MYND domain-containing protein 2 OS=Bos taurus
GN=ANKMY2 PE=2 SV=1
Length = 442
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 346 RRCSVCGAVNYCSRACQALDWKLRHKADC------------APAERWLDEEGNGDVDVDL 393
+RCSVC V YC + CQ W HK C A+ +EE N +DV+
Sbjct: 330 KRCSVCKMVIYCDQTCQKTHW-FAHKKICKNLKDIYEKQQLEAAKAKSEEENNSKLDVNS 388
Query: 394 N 394
N
Sbjct: 389 N 389
>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1
SV=2
Length = 1172
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 347 RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDE 383
RCS C YCS ACQ DW H C P ++ L++
Sbjct: 173 RCSQCKQTYYCSTACQRRDWS-SHSTICRPVQQSLNK 208
>sp|Q54ZX8|Y7331_DICDI SET and MYND domain-containing protein DDB_G0277331
OS=Dictyostelium discoideum GN=DDB_G0277331 PE=3 SV=1
Length = 549
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 345 FRRCSVCGAVNYCSRACQALDWKLRHKADC 374
+RCS C V YCS CQ WK+ HK +C
Sbjct: 87 LKRCSNCKLVYYCSTDCQTKAWKI-HKQEC 115
>sp|Q6IND7|LR2BP_XENLA LRP2-binding protein OS=Xenopus laevis GN=lrp2bp PE=2 SV=1
Length = 341
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQF 179
++A FLK G+V+A + LG + F + A L + QALY V+ +
Sbjct: 41 QTAETFLKSRIKEGDVQANFLLGQLFF--EEGWYEDALLQFEKVKDEDNQALYQAGVMYY 98
Query: 180 NGSGGSKNDKDLRAGVAL--------CARAAFLGHIDALRELGHCLQDGYGVRQNIAEGR 231
+G G +D R GV C A L + A LG +GYG+ + E
Sbjct: 99 DGLG---TQEDHRKGVKYMERIVTSDCPSAKHLKYAAAYN-LGRAYFEGYGIPHSDKEAE 154
Query: 232 RFLVQA 237
R+ + A
Sbjct: 155 RWWLFA 160
>sp|P34226|SKT5_YEAST Protein SKT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SKT5 PE=1 SV=1
Length = 696
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 149 LQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHID 208
LQ S + K +I ++ A Y LA +G+ G +K+ L AA GHI+
Sbjct: 252 LQFLKEAQSYLKKLSIKGYSDAQYLLADGYSSGAFGKIENKE---AFVLFQAAAKHGHIE 308
Query: 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240
+ HCL++G G ++ + FL A +R
Sbjct: 309 SAYRASHCLEEGLGTTRDSRKSVNFLKFAASR 340
>sp|Q1PEW8|FB127_ARATH F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2
SV=1
Length = 163
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANN 117
+ALP DL+ I+ K+ + D+ N +++CK + A + VL K +K
Sbjct: 11 LEALPQDLLREIVAKIG--VKSAEDYHNCILSCKELGASANDERVL-KTLNLALLVKKPL 67
Query: 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVI 177
+K C N +A Y G+I ++ L + + AA +A+Y A++
Sbjct: 68 SCRKHLLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYAML 127
>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana
GN=ASHR1 PE=2 SV=2
Length = 480
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 341 RRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEE 384
+ + ++CS C V YC +CQ +WKL H+ +C R E+
Sbjct: 61 KTNNLKKCSACQVVWYCGSSCQKSEWKL-HRDECKALTRLEKEK 103
>sp|Q3TPE9|ANKY2_MOUSE Ankyrin repeat and MYND domain-containing protein 2 OS=Mus musculus
GN=Ankmy2 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 346 RRCSVCGAVNYCSRACQALDWKLRHKADCAP------------AERWLDEEGNGDVDVDL 393
+RCSVC V YC + CQ W HK C A+ EE NG+ +V
Sbjct: 330 KRCSVCKMVIYCDQTCQKTHW-FAHKKMCKSLKDVYEKQQIEAAKHKRQEEKNGNPNVSS 388
Query: 394 N-------DAEGG--GEDNVVADS 408
N +AE G E+++ +DS
Sbjct: 389 NHVNEDQPEAEEGITQENSIPSDS 412
>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2
Length = 433
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 340 TRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA----ERW 380
TR+ +C C YC+ CQ DW + HK +C+P E W
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSPMVVFGENW 100
>sp|O77562|DEAF1_PANTR Deformed epidermal autoregulatory factor 1 homolog OS=Pan
troglodytes GN=DEAF1 PE=2 SV=1
Length = 565
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367
V CGR C+ C VNYCS CQ DWK
Sbjct: 505 VNCGR-----EAMNECTGCHKVNYCSTFCQRKDWK 534
>sp|Q05787|HRD3_YEAST ERAD-associated E3 ubiquitin-protein ligase component HRD3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=HRD3 PE=1 SV=1
Length = 833
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 112 AIKANNWSESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAK------ 161
+I N ++S +L + N EA YTL I + N +L K
Sbjct: 76 SIWQNEITDSQRHIYELLVQSSEQFNNSEATYTLSQIHLWSQYNFPHNMTLAHKYLEKFN 135
Query: 162 --AAISSHAQALYSLAVIQFNGSGGSKNDK-----DLRAGVALCARAAFLGHIDALRELG 214
++H+ A++ LAV+ G S ND+ D + RAA LG++ A + L
Sbjct: 136 DLTHFTNHS-AIFDLAVMYATGGCASGNDQTVIPQDSAKALLYYQRAAQLGNLKAKQVLA 194
Query: 215 HCLQDGYGVRQNI 227
+ G+ V +N
Sbjct: 195 YKYYSGFNVPRNF 207
>sp|Q9Z1T5|DEAF1_MOUSE Deformed epidermal autoregulatory factor 1 homolog OS=Mus musculus
GN=Deaf1 PE=1 SV=1
Length = 566
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367
V CGR C+ C VNYCS CQ DWK
Sbjct: 506 VNCGR-----EAMSECTGCHKVNYCSTFCQRKDWK 535
>sp|O75398|DEAF1_HUMAN Deformed epidermal autoregulatory factor 1 homolog OS=Homo sapiens
GN=DEAF1 PE=1 SV=1
Length = 565
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367
V CGR C+ C VNYCS CQ DWK
Sbjct: 505 VNCGR-----EAMSECTGCHKVNYCSTFCQRKDWK 534
>sp|O88450|DEAF1_RAT Deformed epidermal autoregulatory factor 1 homolog OS=Rattus
norvegicus GN=Deaf1 PE=2 SV=1
Length = 565
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367
V CGR C+ C VNYCS CQ DWK
Sbjct: 505 VNCGR-----EAMSECTGCHKVNYCSTFCQRKDWK 534
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana
GN=UBP18 PE=2 SV=2
Length = 631
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 346 RRCSVCGAVNYCSRACQALDWKLRHKADC 374
++CS C +V YCS CQ DW H+ +C
Sbjct: 70 KKCSRCKSVRYCSAECQRSDWSSGHQRNC 98
>sp|Q5ZMD2|ANKY2_CHICK Ankyrin repeat and MYND domain-containing protein 2 OS=Gallus
gallus GN=ANKMY2 PE=2 SV=1
Length = 460
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 346 RRCSVCGAVNYCSRACQALDWKLRHKADC 374
+RCSVC V YC + CQ W HK C
Sbjct: 330 KRCSVCKVVMYCDQNCQKTHW-FTHKKVC 357
>sp|A9CPT4|TDRD1_ORYLA Tudor domain-containing protein 1 OS=Oryzias latipes GN=tdrd1 PE=2
SV=1
Length = 1133
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 323 PGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLD 382
P P C + G + RC C YCS CQ DWK H+ C + D
Sbjct: 68 PAPTAHFCHYCG-------QQGIFRCKGCKKTPYCSVDCQREDWK-AHRHMC----KSFD 115
Query: 383 EEGNGDVDVDLNDAEGGGEDNVVADS 408
E G+ N E DNV DS
Sbjct: 116 PETVGE-----NMKESPDSDNVREDS 136
>sp|Q80TS8|SE1L3_MOUSE Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3
Length = 1137
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 125 FLKLCADAGNVEACYTLGMIRFYCLQ----NRGSGASLMAKAAISSHAQAL-YSLAVIQF 179
+LK A GN A L + F+ Q N + AK A+ + AL Y A++ F
Sbjct: 684 WLKHEATRGNAAAQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLF 743
Query: 180 NGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238
G G KN R + L +AA G A+ LG R+N A+ ++ ++A
Sbjct: 744 KGQGVKKNR---RLALELMKKAASKGLHQAVNGLGWYYHK---FRKNYAKAAKYWLKAE 796
>sp|Q7TSV3|ZMY19_RAT Zinc finger MYND domain-containing protein 19 OS=Rattus norvegicus
GN=Zmynd19 PE=2 SV=1
Length = 227
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 301 PAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRP-----ETRRHEFRRCSVCGAVN 355
P E P + ++ A G C++ C P E + EF C C
Sbjct: 136 PIEEQFPVLN-VTRYYNANGDVVEEEENSCTYYECHYPPCTVIEKQLREFNICGRCQVAR 194
Query: 356 YCSRACQALDWKLRHKADCAPAERWLDEE 384
YC CQ DW HK C +R E
Sbjct: 195 YCGSQCQQKDWPA-HKKHCRERKRPFQHE 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,076,364
Number of Sequences: 539616
Number of extensions: 7111987
Number of successful extensions: 14906
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 14849
Number of HSP's gapped (non-prelim): 123
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)