Query 015393
Match_columns 408
No_of_seqs 447 out of 2626
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0790 FOG: TPR repeat, SEL1 99.8 7.9E-20 1.7E-24 177.9 18.7 131 115-248 89-228 (292)
2 COG0790 FOG: TPR repeat, SEL1 99.8 5.8E-17 1.2E-21 157.7 19.7 131 116-249 126-275 (292)
3 KOG1550 Extracellular protein 99.7 7E-17 1.5E-21 170.8 16.6 131 114-248 260-401 (552)
4 KOG1550 Extracellular protein 99.6 3E-15 6.4E-20 158.5 13.8 128 119-249 228-366 (552)
5 KOG4014 Uncharacterized conser 99.5 3.5E-12 7.5E-17 113.8 16.6 122 118-239 88-232 (248)
6 KOG4014 Uncharacterized conser 99.4 1.5E-12 3.3E-17 116.0 12.5 139 119-257 51-219 (248)
7 PF01753 zf-MYND: MYND finger; 98.7 5.3E-09 1.1E-13 70.1 1.6 28 346-374 10-37 (37)
8 smart00671 SEL1 Sel1-like repe 98.5 2.1E-07 4.6E-12 61.2 4.5 35 208-242 2-36 (36)
9 PF08238 Sel1: Sel1 repeat; I 98.4 3E-07 6.4E-12 61.7 4.3 36 207-242 1-39 (39)
10 KOG1710 MYND Zn-finger and ank 98.3 1E-07 2.2E-12 90.5 0.1 63 306-377 300-362 (396)
11 smart00671 SEL1 Sel1-like repe 98.3 9.3E-07 2E-11 58.1 4.6 36 168-206 1-36 (36)
12 PF08238 Sel1: Sel1 repeat; I 98.3 1E-06 2.2E-11 59.0 3.8 36 168-206 1-39 (39)
13 KOG4626 O-linked N-acetylgluco 98.2 1.7E-05 3.7E-10 82.6 13.6 121 113-245 330-456 (966)
14 PRK10370 formate-dependent nit 98.2 5.4E-05 1.2E-09 70.0 14.3 115 119-244 55-177 (198)
15 PRK15359 type III secretion sy 98.1 0.0001 2.2E-09 64.5 13.6 107 123-242 13-123 (144)
16 KOG4626 O-linked N-acetylgluco 98.1 5.4E-05 1.2E-09 79.0 13.3 107 121-239 304-416 (966)
17 TIGR02552 LcrH_SycD type III s 97.9 0.0002 4.3E-09 60.9 12.5 98 133-242 15-116 (135)
18 KOG1155 Anaphase-promoting com 97.9 0.00048 1E-08 70.0 15.5 108 120-239 381-494 (559)
19 TIGR02521 type_IV_pilW type IV 97.8 0.00087 1.9E-08 60.6 15.8 113 116-240 78-198 (234)
20 PRK12370 invasion protein regu 97.8 0.0015 3.2E-08 69.7 19.1 110 119-240 320-435 (553)
21 TIGR02521 type_IV_pilW type IV 97.8 0.0012 2.6E-08 59.7 15.9 114 116-241 44-165 (234)
22 TIGR00990 3a0801s09 mitochondr 97.8 0.00052 1.1E-08 74.0 15.3 112 118-241 309-429 (615)
23 PRK09782 bacteriophage N4 rece 97.8 0.0016 3.4E-08 73.8 19.3 114 117-242 590-708 (987)
24 TIGR00990 3a0801s09 mitochondr 97.7 0.0021 4.5E-08 69.3 18.4 110 119-240 381-496 (615)
25 KOG2003 TPR repeat-containing 97.7 0.0012 2.5E-08 67.0 14.8 93 118-218 505-603 (840)
26 KOG1155 Anaphase-promoting com 97.7 0.0024 5.2E-08 65.0 16.9 113 119-243 346-464 (559)
27 PRK11189 lipoprotein NlpI; Pro 97.6 0.0017 3.6E-08 63.7 15.2 114 117-241 78-195 (296)
28 PRK02603 photosystem I assembl 97.6 0.00091 2E-08 60.0 12.1 101 131-239 31-141 (172)
29 PRK15363 pathogenicity island 97.6 0.0011 2.3E-08 58.8 11.5 96 134-241 34-133 (157)
30 PRK15359 type III secretion sy 97.6 0.0016 3.4E-08 56.9 12.6 93 117-217 38-136 (144)
31 PRK12370 invasion protein regu 97.6 0.002 4.3E-08 68.7 15.8 112 117-240 352-470 (553)
32 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0018 4E-08 53.0 11.9 95 135-241 2-106 (119)
33 PRK11788 tetratricopeptide rep 97.5 0.011 2.4E-07 59.3 19.1 110 119-240 157-278 (389)
34 PRK11189 lipoprotein NlpI; Pro 97.5 0.0044 9.5E-08 60.7 15.5 111 120-242 43-163 (296)
35 PRK11447 cellulose synthase su 97.4 0.013 2.9E-07 67.8 20.3 113 116-240 282-414 (1157)
36 PF13414 TPR_11: TPR repeat; P 97.3 0.00094 2E-08 50.1 7.2 64 134-204 2-67 (69)
37 cd00189 TPR Tetratricopeptide 97.3 0.003 6.5E-08 47.6 10.1 92 137-240 2-97 (100)
38 PRK15179 Vi polysaccharide bio 97.3 0.0067 1.4E-07 66.3 16.3 114 117-242 100-219 (694)
39 PRK11447 cellulose synthase su 97.3 0.0064 1.4E-07 70.5 16.6 119 117-240 365-524 (1157)
40 PLN03088 SGT1, suppressor of 97.3 0.0035 7.6E-08 63.2 12.5 93 117-217 16-114 (356)
41 CHL00033 ycf3 photosystem I as 97.2 0.0061 1.3E-07 54.3 12.7 96 134-238 34-140 (168)
42 TIGR02917 PEP_TPR_lipo putativ 97.2 0.016 3.4E-07 63.4 18.2 113 117-242 750-868 (899)
43 KOG2003 TPR repeat-containing 97.2 0.0043 9.2E-08 63.0 12.2 95 134-240 489-587 (840)
44 PLN03088 SGT1, suppressor of 97.2 0.0071 1.5E-07 61.0 14.0 90 140-241 7-100 (356)
45 PRK15174 Vi polysaccharide exp 97.2 0.022 4.7E-07 62.2 18.5 111 118-240 227-347 (656)
46 PRK11788 tetratricopeptide rep 97.2 0.013 2.7E-07 58.8 15.6 114 117-242 83-211 (389)
47 PRK15174 Vi polysaccharide exp 97.2 0.021 4.6E-07 62.3 18.2 114 115-240 259-381 (656)
48 KOG1126 DNA-binding cell divis 97.2 0.0033 7.1E-08 66.4 11.3 113 118-242 436-554 (638)
49 PF12688 TPR_5: Tetratrico pep 97.0 0.011 2.5E-07 50.2 11.5 96 135-242 1-106 (120)
50 PRK09782 bacteriophage N4 rece 97.0 0.082 1.8E-06 60.2 21.0 114 116-241 555-673 (987)
51 KOG1125 TPR repeat-containing 97.0 0.0045 9.6E-08 64.5 10.0 105 123-239 415-526 (579)
52 TIGR03302 OM_YfiO outer membra 96.9 0.018 3.8E-07 53.8 13.2 118 118-240 48-195 (235)
53 TIGR02552 LcrH_SycD type III s 96.9 0.015 3.2E-07 49.3 11.1 80 118-205 32-115 (135)
54 PF13414 TPR_11: TPR repeat; P 96.9 0.0044 9.6E-08 46.3 7.0 63 167-240 2-67 (69)
55 PRK15363 pathogenicity island 96.8 0.016 3.5E-07 51.4 11.2 82 115-204 47-132 (157)
56 PF13424 TPR_12: Tetratricopep 96.8 0.0048 1E-07 47.4 6.9 61 135-203 5-74 (78)
57 PRK02603 photosystem I assembl 96.8 0.048 1E-06 48.8 14.2 111 117-239 49-166 (172)
58 COG3063 PilF Tfp pilus assembl 96.8 0.018 3.9E-07 54.0 11.4 113 116-240 48-168 (250)
59 TIGR02917 PEP_TPR_lipo putativ 96.7 0.11 2.4E-06 56.7 19.4 111 117-239 139-255 (899)
60 COG3063 PilF Tfp pilus assembl 96.6 0.056 1.2E-06 50.8 13.3 120 117-248 83-210 (250)
61 PRK10803 tol-pal system protei 96.6 0.04 8.6E-07 53.3 12.7 97 133-240 140-246 (263)
62 PF13432 TPR_16: Tetratricopep 96.5 0.008 1.7E-07 44.5 6.2 58 139-204 1-60 (65)
63 KOG2002 TPR-containing nuclear 96.5 0.039 8.5E-07 60.8 13.5 115 119-241 286-410 (1018)
64 PRK10049 pgaA outer membrane p 96.5 0.058 1.3E-06 59.9 15.0 110 117-239 63-178 (765)
65 PRK10370 formate-dependent nit 96.4 0.066 1.4E-06 49.4 13.0 85 116-207 86-176 (198)
66 PF12895 Apc3: Anaphase-promot 96.4 0.017 3.7E-07 45.2 7.8 59 120-179 6-69 (84)
67 KOG2002 TPR-containing nuclear 96.4 0.064 1.4E-06 59.1 14.3 110 119-240 252-371 (1018)
68 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.012 2.6E-07 60.3 8.3 70 130-207 70-144 (453)
69 PF14938 SNAP: Soluble NSF att 96.4 0.029 6.2E-07 54.6 10.6 92 137-240 77-184 (282)
70 PF12937 F-box-like: F-box-lik 96.4 0.0023 5.1E-08 44.7 2.1 42 58-104 1-42 (47)
71 PF13429 TPR_15: Tetratricopep 96.3 0.035 7.6E-07 53.5 10.9 109 119-240 126-243 (280)
72 PRK10049 pgaA outer membrane p 96.3 0.32 6.9E-06 54.1 19.4 110 118-240 30-145 (765)
73 PF14938 SNAP: Soluble NSF att 96.3 0.047 1E-06 53.1 11.5 99 118-240 30-144 (282)
74 PF13424 TPR_12: Tetratricopep 96.3 0.013 2.9E-07 44.9 6.2 61 168-239 5-74 (78)
75 CHL00033 ycf3 photosystem I as 96.2 0.054 1.2E-06 48.1 10.8 62 117-179 49-117 (168)
76 COG4235 Cytochrome c biogenesi 96.2 0.059 1.3E-06 52.4 11.6 108 128-244 149-260 (287)
77 PF12895 Apc3: Anaphase-promot 96.2 0.037 7.9E-07 43.3 8.3 78 149-237 2-84 (84)
78 PF13432 TPR_16: Tetratricopep 96.1 0.025 5.4E-07 41.8 6.9 58 172-240 1-60 (65)
79 PRK11906 transcriptional regul 96.1 0.11 2.3E-06 53.7 13.2 116 119-245 274-406 (458)
80 KOG1126 DNA-binding cell divis 96.1 0.04 8.6E-07 58.4 10.2 110 119-240 471-586 (638)
81 PF09976 TPR_21: Tetratricopep 96.0 0.088 1.9E-06 45.7 10.9 91 135-237 48-144 (145)
82 PRK15179 Vi polysaccharide bio 96.0 0.063 1.4E-06 58.8 12.0 97 133-241 84-184 (694)
83 TIGR03302 OM_YfiO outer membra 96.0 0.086 1.9E-06 49.1 11.4 100 133-240 31-144 (235)
84 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.14 3E-06 41.6 11.1 80 117-204 16-105 (119)
85 COG5010 TadD Flp pilus assembl 95.8 0.23 4.9E-06 47.4 13.4 110 121-242 84-199 (257)
86 PF13429 TPR_15: Tetratricopep 95.8 0.12 2.6E-06 49.7 11.7 44 190-237 229-274 (280)
87 KOG1129 TPR repeat-containing 95.7 0.09 2E-06 51.9 10.4 120 117-248 304-434 (478)
88 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.056 1.2E-06 55.6 8.5 71 163-244 70-145 (453)
89 PRK10153 DNA-binding transcrip 95.3 0.36 7.8E-06 51.2 14.0 113 119-242 358-484 (517)
90 cd05804 StaR_like StaR_like; a 95.1 0.25 5.4E-06 48.8 11.8 95 134-240 113-215 (355)
91 smart00256 FBOX A Receptor for 95.0 0.054 1.2E-06 35.9 4.6 37 61-102 1-37 (41)
92 PRK10747 putative protoheme IX 95.0 0.87 1.9E-05 46.5 15.6 118 113-242 95-218 (398)
93 cd00189 TPR Tetratricopeptide 95.0 0.23 4.9E-06 36.9 8.7 79 118-204 15-97 (100)
94 PRK10803 tol-pal system protei 95.0 0.39 8.5E-06 46.4 12.2 80 117-204 157-246 (263)
95 KOG1130 Predicted G-alpha GTPa 94.9 0.11 2.5E-06 52.6 8.4 101 127-239 223-343 (639)
96 COG2956 Predicted N-acetylgluc 94.6 2.3 4.9E-05 42.2 16.3 111 120-241 158-279 (389)
97 PRK14574 hmsH outer membrane p 94.6 0.86 1.9E-05 51.1 15.4 115 117-242 82-200 (822)
98 PRK14574 hmsH outer membrane p 94.6 0.29 6.3E-06 54.7 11.5 92 119-217 118-213 (822)
99 KOG3617 WD40 and TPR repeat-co 94.5 0.24 5.1E-06 54.2 9.9 88 148-245 870-1001(1416)
100 PF12688 TPR_5: Tetratrico pep 94.5 0.92 2E-05 38.5 11.8 79 117-203 15-103 (120)
101 PRK14720 transcript cleavage f 94.4 0.36 7.8E-06 54.1 11.8 113 115-240 43-178 (906)
102 COG5010 TadD Flp pilus assembl 94.4 0.99 2.1E-05 43.2 13.1 109 115-235 112-226 (257)
103 PRK11906 transcriptional regul 94.4 0.31 6.8E-06 50.3 10.3 107 137-247 257-374 (458)
104 PF13428 TPR_14: Tetratricopep 94.1 0.11 2.3E-06 35.6 4.4 40 136-176 2-43 (44)
105 PRK15331 chaperone protein Sic 94.0 0.48 1E-05 42.5 9.5 92 137-240 39-134 (165)
106 KOG4162 Predicted calmodulin-b 94.0 1.3 2.8E-05 48.2 14.2 117 116-242 663-785 (799)
107 COG2956 Predicted N-acetylgluc 94.0 0.32 7E-06 48.0 9.0 185 52-244 41-247 (389)
108 KOG2076 RNA polymerase III tra 93.9 0.79 1.7E-05 50.5 12.6 114 117-242 153-272 (895)
109 KOG0547 Translocase of outer m 93.7 0.64 1.4E-05 48.2 10.9 117 115-243 372-494 (606)
110 PF00646 F-box: F-box domain; 93.6 0.032 7E-07 38.8 1.1 41 57-102 2-42 (48)
111 KOG3612 PHD Zn-finger protein 93.6 0.025 5.5E-07 58.5 0.7 45 326-380 526-570 (588)
112 KOG2061 Uncharacterized MYND Z 93.5 0.033 7.2E-07 55.3 1.3 48 325-379 134-181 (362)
113 TIGR00540 hemY_coli hemY prote 93.4 1.6 3.6E-05 44.6 13.8 78 150-238 313-397 (409)
114 KOG0547 Translocase of outer m 93.4 0.43 9.4E-06 49.4 9.2 83 148-240 474-566 (606)
115 KOG1840 Kinesin light chain [C 93.3 1.3 2.8E-05 46.8 12.8 148 81-240 213-396 (508)
116 KOG1129 TPR repeat-containing 93.3 0.88 1.9E-05 45.1 10.6 80 149-239 303-386 (478)
117 KOG1173 Anaphase-promoting com 93.2 0.59 1.3E-05 49.1 10.0 108 119-238 328-441 (611)
118 TIGR00540 hemY_coli hemY prote 93.2 3.9 8.5E-05 41.8 16.2 113 117-241 98-217 (409)
119 PF07719 TPR_2: Tetratricopept 93.0 0.19 4.2E-06 31.7 4.1 30 135-165 1-30 (34)
120 KOG1840 Kinesin light chain [C 93.0 2.4 5.1E-05 44.9 14.3 118 116-239 338-478 (508)
121 KOG1173 Anaphase-promoting com 93.0 0.4 8.7E-06 50.3 8.3 96 133-240 310-409 (611)
122 PF13371 TPR_9: Tetratricopept 92.9 0.71 1.5E-05 34.4 7.8 56 142-205 2-59 (73)
123 KOG3617 WD40 and TPR repeat-co 92.8 0.87 1.9E-05 50.0 10.7 67 129-201 961-1048(1416)
124 PF13281 DUF4071: Domain of un 92.8 3.2 7E-05 42.1 14.3 132 108-241 184-335 (374)
125 KOG2076 RNA polymerase III tra 92.8 3.6 7.9E-05 45.5 15.5 147 81-242 153-311 (895)
126 PF14559 TPR_19: Tetratricopep 92.7 0.38 8.3E-06 35.4 5.9 49 149-204 4-54 (68)
127 PRK10747 putative protoheme IX 92.7 3.3 7.2E-05 42.2 14.6 77 150-237 308-387 (398)
128 PRK15331 chaperone protein Sic 92.6 3.7 8.1E-05 36.8 12.9 80 118-205 52-135 (165)
129 KOG1586 Protein required for f 92.6 0.68 1.5E-05 43.9 8.4 99 117-239 28-142 (288)
130 COG1729 Uncharacterized protei 92.6 1.5 3.2E-05 42.3 11.0 98 138-247 144-253 (262)
131 PF13428 TPR_14: Tetratricopep 92.5 0.28 6E-06 33.5 4.5 41 168-215 1-43 (44)
132 PF00515 TPR_1: Tetratricopept 92.2 0.29 6.3E-06 31.1 4.1 30 135-165 1-30 (34)
133 COG4783 Putative Zn-dependent 91.7 11 0.00024 39.2 16.7 114 119-240 322-454 (484)
134 PF09976 TPR_21: Tetratricopep 91.6 1.6 3.5E-05 37.7 9.4 77 117-201 62-144 (145)
135 cd05804 StaR_like StaR_like; a 91.5 4.9 0.00011 39.5 14.0 114 114-240 54-177 (355)
136 KOG4555 TPR repeat-containing 91.5 3.3 7.1E-05 36.0 10.6 93 113-213 53-153 (175)
137 PF13176 TPR_7: Tetratricopept 91.4 0.33 7.1E-06 31.7 3.7 26 137-163 1-26 (36)
138 KOG2997 F-box protein FBX9 [Ge 91.3 0.25 5.5E-06 48.4 4.2 50 57-106 106-155 (366)
139 PLN02789 farnesyltranstransfer 91.0 6.4 0.00014 39.1 14.1 113 118-239 52-170 (320)
140 PLN02789 farnesyltranstransfer 90.8 4.6 9.9E-05 40.2 12.9 114 121-239 126-249 (320)
141 KOG2120 SCF ubiquitin ligase, 90.3 0.45 9.7E-06 46.7 4.9 42 58-104 98-139 (419)
142 PF09295 ChAPs: ChAPs (Chs5p-A 89.8 6.9 0.00015 40.1 13.4 104 118-234 184-291 (395)
143 KOG4555 TPR repeat-containing 89.5 5.2 0.00011 34.8 10.2 91 148-249 55-153 (175)
144 KOG1130 Predicted G-alpha GTPa 89.3 2.3 5E-05 43.4 9.2 76 120-203 252-343 (639)
145 KOG0543 FKBP-type peptidyl-pro 89.3 2.9 6.4E-05 42.4 10.0 62 168-240 257-320 (397)
146 PF07719 TPR_2: Tetratricopept 89.3 0.86 1.9E-05 28.5 4.3 30 207-240 1-30 (34)
147 PF14559 TPR_19: Tetratricopep 89.2 1.5 3.2E-05 32.2 6.1 57 118-175 6-66 (68)
148 PRK10866 outer membrane biogen 89.0 8.6 0.00019 36.6 12.7 100 133-240 30-153 (243)
149 PRK10153 DNA-binding transcrip 88.8 3.6 7.7E-05 43.7 10.9 66 132-205 417-483 (517)
150 PF13181 TPR_8: Tetratricopept 88.7 0.87 1.9E-05 28.7 4.0 28 136-164 2-29 (34)
151 PF13525 YfiO: Outer membrane 88.5 4.3 9.2E-05 37.3 10.0 100 133-240 3-119 (203)
152 PRK14720 transcript cleavage f 88.1 6.2 0.00013 44.6 12.5 74 121-203 100-177 (906)
153 PLN03218 maturation of RBCL 1; 88.0 13 0.00029 43.0 15.4 117 117-242 663-785 (1060)
154 PF13431 TPR_17: Tetratricopep 87.9 0.51 1.1E-05 30.6 2.5 24 132-156 10-33 (34)
155 KOG1125 TPR repeat-containing 87.6 4.4 9.6E-05 42.9 10.3 95 139-245 289-387 (579)
156 PLN03158 methionine aminopepti 87.3 0.48 1.1E-05 48.5 3.1 43 324-374 6-55 (396)
157 COG1729 Uncharacterized protei 86.9 9.1 0.0002 36.9 11.3 63 134-204 177-244 (262)
158 KOG3060 Uncharacterized conser 86.7 3.7 7.9E-05 39.5 8.3 67 133-204 152-220 (289)
159 KOG0543 FKBP-type peptidyl-pro 86.4 8.8 0.00019 39.1 11.3 77 135-219 257-337 (397)
160 PF13824 zf-Mss51: Zinc-finger 86.3 0.58 1.3E-05 34.0 2.2 33 346-379 15-47 (55)
161 PLN03218 maturation of RBCL 1; 86.0 63 0.0014 37.6 19.5 114 117-242 628-750 (1060)
162 KOG0553 TPR repeat-containing 85.7 4.4 9.5E-05 39.7 8.5 78 119-204 97-178 (304)
163 PF13371 TPR_9: Tetratricopept 84.8 5.7 0.00012 29.4 7.3 49 117-166 9-59 (73)
164 PF13176 TPR_7: Tetratricopept 84.6 1.9 4.1E-05 28.0 3.9 26 209-238 1-26 (36)
165 KOG4162 Predicted calmodulin-b 84.3 4.6 9.9E-05 44.1 8.7 77 120-204 701-783 (799)
166 PF13431 TPR_17: Tetratricopep 84.2 1 2.2E-05 29.2 2.4 30 198-231 2-33 (34)
167 PF13374 TPR_10: Tetratricopep 84.1 2.1 4.5E-05 27.9 4.1 28 136-164 3-30 (42)
168 KOG1127 TPR repeat-containing 84.0 5.8 0.00013 44.7 9.4 82 119-204 18-103 (1238)
169 PF00515 TPR_1: Tetratricopept 83.8 2.6 5.5E-05 26.5 4.3 30 207-240 1-30 (34)
170 PF13174 TPR_6: Tetratricopept 83.7 1.4 3E-05 27.3 2.9 28 136-164 1-28 (33)
171 KOG0553 TPR repeat-containing 83.6 7.2 0.00016 38.2 9.0 84 148-242 93-180 (304)
172 KOG1128 Uncharacterized conser 83.3 6.3 0.00014 42.9 9.2 94 136-241 486-583 (777)
173 PF09986 DUF2225: Uncharacteri 82.5 10 0.00022 35.5 9.4 47 153-206 142-196 (214)
174 PF11207 DUF2989: Protein of u 81.5 10 0.00022 35.2 8.7 90 128-234 103-201 (203)
175 PF09986 DUF2225: Uncharacteri 81.0 6.4 0.00014 36.8 7.5 70 171-244 121-198 (214)
176 PF13281 DUF4071: Domain of un 80.2 6.1 0.00013 40.2 7.4 87 132-218 178-270 (374)
177 PF06552 TOM20_plant: Plant sp 79.5 3.1 6.8E-05 37.9 4.6 14 133-146 23-36 (186)
178 PF13181 TPR_8: Tetratricopept 79.3 4.6 9.9E-05 25.2 4.2 28 169-203 2-29 (34)
179 PF13174 TPR_6: Tetratricopept 77.8 3.6 7.9E-05 25.3 3.4 28 208-239 1-28 (33)
180 KOG1585 Protein required for f 77.7 6.3 0.00014 37.8 6.2 87 148-239 43-138 (308)
181 KOG3060 Uncharacterized conser 77.6 71 0.0015 30.9 14.5 123 110-242 93-222 (289)
182 smart00028 TPR Tetratricopepti 77.2 2.8 6.1E-05 24.2 2.7 28 136-164 2-29 (34)
183 KOG2047 mRNA splicing factor [ 76.6 9.2 0.0002 41.3 7.7 118 113-240 521-651 (835)
184 PF06552 TOM20_plant: Plant sp 76.4 12 0.00026 34.2 7.4 25 154-178 53-79 (186)
185 KOG1941 Acetylcholine receptor 76.3 38 0.00082 34.4 11.4 109 119-239 138-274 (518)
186 PF11207 DUF2989: Protein of u 76.2 33 0.00071 31.9 10.3 70 119-197 122-200 (203)
187 PF13374 TPR_10: Tetratricopep 75.1 6.6 0.00014 25.4 4.3 29 207-239 2-30 (42)
188 PLN03081 pentatricopeptide (PP 74.0 37 0.0008 37.2 12.1 47 118-166 274-320 (697)
189 PRK04841 transcriptional regul 73.9 48 0.001 37.3 13.3 111 117-239 505-640 (903)
190 PF13525 YfiO: Outer membrane 73.5 40 0.00086 30.8 10.5 85 118-203 20-118 (203)
191 PRK04841 transcriptional regul 72.5 54 0.0012 36.9 13.3 110 118-239 467-601 (903)
192 KOG1127 TPR repeat-containing 72.2 20 0.00044 40.6 9.2 65 149-219 15-83 (1238)
193 KOG1586 Protein required for f 71.8 13 0.00029 35.4 6.7 83 149-239 86-182 (288)
194 PF09205 DUF1955: Domain of un 70.9 30 0.00065 30.2 8.1 41 166-213 118-158 (161)
195 PLN03081 pentatricopeptide (PP 70.8 26 0.00056 38.4 10.0 77 119-203 376-454 (697)
196 PLN03077 Protein ECB2; Provisi 69.6 89 0.0019 35.2 14.1 42 119-161 304-348 (857)
197 COG4235 Cytochrome c biogenesi 68.3 1.2E+02 0.0026 29.8 12.7 80 120-206 173-258 (287)
198 KOG0495 HAT repeat protein [RN 67.7 56 0.0012 35.7 11.0 114 121-245 737-855 (913)
199 PF10300 DUF3808: Protein of u 64.9 81 0.0018 33.1 11.8 118 116-241 246-377 (468)
200 PLN03077 Protein ECB2; Provisi 64.8 68 0.0015 36.1 11.9 45 119-166 540-584 (857)
201 PF12569 NARP1: NMDA receptor- 64.5 37 0.0008 36.2 9.2 95 137-239 196-312 (517)
202 KOG0495 HAT repeat protein [RN 63.5 2.1E+02 0.0045 31.5 14.2 110 119-240 634-748 (913)
203 KOG3362 Predicted BBOX Zn-fing 63.0 3.2 6.9E-05 36.1 0.7 36 324-367 115-150 (156)
204 PF10373 EST1_DNA_bind: Est1 D 62.7 27 0.00058 33.1 7.2 58 122-180 1-62 (278)
205 PF07721 TPR_4: Tetratricopept 62.5 8.3 0.00018 23.1 2.3 24 136-160 2-25 (26)
206 KOG2857 Predicted MYND Zn-fing 60.7 8 0.00017 33.6 2.7 29 346-380 18-48 (157)
207 PF13512 TPR_18: Tetratricopep 60.5 1.2E+02 0.0025 26.6 11.3 78 134-219 9-96 (142)
208 PF05843 Suf: Suppressor of fo 59.7 1.2E+02 0.0026 29.3 11.2 113 119-240 17-136 (280)
209 PRK10866 outer membrane biogen 59.6 1.6E+02 0.0035 27.9 16.1 86 118-204 47-153 (243)
210 KOG1585 Protein required for f 58.7 1.4E+02 0.003 28.9 10.8 83 113-203 41-138 (308)
211 PF10373 EST1_DNA_bind: Est1 D 57.8 14 0.00031 34.9 4.4 58 155-219 1-62 (278)
212 PF04733 Coatomer_E: Coatomer 55.4 1.1E+02 0.0025 29.8 10.3 107 119-239 118-229 (290)
213 PF12569 NARP1: NMDA receptor- 55.4 2.9E+02 0.0062 29.5 15.4 119 118-248 126-265 (517)
214 KOG1156 N-terminal acetyltrans 54.5 47 0.001 36.0 7.7 82 124-215 32-117 (700)
215 PF13512 TPR_18: Tetratricopep 54.1 53 0.0011 28.8 6.8 86 115-203 23-127 (142)
216 KOG0548 Molecular co-chaperone 52.0 3.2E+02 0.007 29.1 16.4 88 142-241 365-456 (539)
217 KOG1128 Uncharacterized conser 51.9 53 0.0011 36.1 7.7 81 157-248 471-558 (777)
218 PF04733 Coatomer_E: Coatomer 51.7 47 0.001 32.5 6.9 96 117-219 145-247 (290)
219 PF08631 SPO22: Meiosis protei 51.6 2.3E+02 0.005 27.2 13.7 116 118-240 8-150 (278)
220 KOG1941 Acetylcholine receptor 51.0 1.5E+02 0.0033 30.3 10.2 96 117-219 176-298 (518)
221 KOG3824 Huntingtin interacting 47.3 50 0.0011 32.8 6.1 54 190-247 131-188 (472)
222 PF04438 zf-HIT: HIT zinc fing 47.0 8.4 0.00018 24.4 0.5 28 328-363 3-30 (30)
223 COG3071 HemY Uncharacterized e 46.7 2.4E+02 0.0052 28.9 10.9 118 113-242 95-218 (400)
224 PRK01343 zinc-binding protein; 45.4 17 0.00037 26.7 2.0 15 353-367 23-37 (57)
225 KOG0550 Molecular chaperone (D 45.3 1E+02 0.0022 31.9 8.1 118 119-243 219-353 (486)
226 KOG1156 N-terminal acetyltrans 44.9 1.1E+02 0.0024 33.3 8.6 83 149-242 20-106 (700)
227 PF10300 DUF3808: Protein of u 43.7 2.5E+02 0.0053 29.5 11.2 115 116-241 201-335 (468)
228 PF09295 ChAPs: ChAPs (Chs5p-A 43.1 2.5E+02 0.0055 28.8 10.8 83 148-242 181-265 (395)
229 PF09205 DUF1955: Domain of un 42.7 2.4E+02 0.0051 24.8 9.6 43 131-174 116-158 (161)
230 COG4783 Putative Zn-dependent 42.4 4.3E+02 0.0094 27.8 12.4 104 125-240 296-403 (484)
231 PLN03215 ascorbic acid mannose 42.3 27 0.00059 35.5 3.6 37 58-98 4-40 (373)
232 KOG3783 Uncharacterized conser 41.2 1.3E+02 0.0027 32.1 8.3 60 150-215 463-532 (546)
233 cd02680 MIT_calpain7_2 MIT: do 40.4 48 0.0011 25.7 4.0 12 191-202 3-14 (75)
234 PF12855 Ecl1: Life-span regul 39.9 15 0.00032 25.4 1.0 17 352-368 21-37 (43)
235 KOG0687 26S proteasome regulat 35.6 67 0.0014 32.2 5.0 72 135-213 104-183 (393)
236 PF08631 SPO22: Meiosis protei 35.5 1E+02 0.0022 29.7 6.4 88 149-238 6-114 (278)
237 KOG3783 Uncharacterized conser 34.4 2.9E+02 0.0063 29.5 9.7 106 55-166 405-521 (546)
238 PF10013 DUF2256: Uncharacteri 34.0 12 0.00025 25.7 -0.3 32 328-363 9-40 (42)
239 COG2256 MGS1 ATPase related to 29.8 5.7E+02 0.012 26.5 10.6 24 119-143 191-214 (436)
240 KOG4340 Uncharacterized conser 29.7 1.1E+02 0.0024 30.4 5.4 76 122-205 131-208 (459)
241 KOG4317 Predicted Zn-finger pr 29.5 23 0.00049 34.9 0.7 35 334-375 9-43 (383)
242 KOG2471 TPR repeat-containing 29.0 86 0.0019 33.2 4.7 73 137-217 285-379 (696)
243 KOG0687 26S proteasome regulat 28.9 1.6E+02 0.0035 29.6 6.4 66 167-239 103-176 (393)
244 PF10602 RPN7: 26S proteasome 28.9 94 0.002 27.9 4.6 92 135-238 36-140 (177)
245 KOG2471 TPR repeat-containing 28.6 94 0.002 32.9 4.9 97 132-240 237-364 (696)
246 PF14561 TPR_20: Tetratricopep 28.3 99 0.0021 24.6 4.1 36 129-165 16-51 (90)
247 PF12753 Nro1: Nuclear pore co 28.2 56 0.0012 33.4 3.2 53 191-243 334-394 (404)
248 PF04212 MIT: MIT (microtubule 27.5 1.4E+02 0.0031 22.1 4.7 18 148-165 17-34 (69)
249 KOG4340 Uncharacterized conser 27.5 1.7E+02 0.0037 29.2 6.2 85 147-242 123-209 (459)
250 PF04305 DUF455: Protein of un 26.6 5.8E+02 0.013 24.5 11.6 80 134-220 148-230 (253)
251 COG3071 HemY Uncharacterized e 26.4 7.2E+02 0.016 25.5 17.4 61 141-208 90-152 (400)
252 PF12968 DUF3856: Domain of Un 26.3 1.6E+02 0.0034 25.4 5.0 62 135-203 62-128 (144)
253 PRK00418 DNA gyrase inhibitor; 26.1 44 0.00096 25.0 1.6 13 355-367 26-38 (62)
254 KOG1174 Anaphase-promoting com 25.8 4.6E+02 0.01 27.4 9.1 99 132-241 399-501 (564)
255 PF05843 Suf: Suppressor of fo 25.7 5.4E+02 0.012 24.7 9.6 80 151-240 16-99 (280)
256 KOG4279 Serine/threonine prote 25.6 72 0.0016 35.4 3.6 74 130-203 237-315 (1226)
257 PF13013 F-box-like_2: F-box-l 25.3 1.1E+02 0.0023 25.6 3.9 35 57-96 21-55 (109)
258 cd02681 MIT_calpain7_1 MIT: do 25.2 1.5E+02 0.0033 22.9 4.5 18 148-165 18-35 (76)
259 KOG3926 F-box proteins [Amino 23.6 1.6E+02 0.0034 28.8 5.1 47 55-105 199-245 (332)
260 COG4338 Uncharacterized protei 23.2 22 0.00047 25.1 -0.5 31 328-363 13-44 (54)
261 KOG3824 Huntingtin interacting 23.0 2.5E+02 0.0054 28.1 6.5 58 148-212 128-189 (472)
262 PF07720 TPR_3: Tetratricopept 22.6 2.1E+02 0.0045 18.7 4.1 28 136-164 2-31 (36)
263 cd02677 MIT_SNX15 MIT: domain 22.5 1.3E+02 0.0028 23.2 3.7 17 149-165 19-35 (75)
264 PRK11619 lytic murein transgly 21.9 1.1E+03 0.023 26.0 13.9 49 149-204 325-375 (644)
265 PF04181 RPAP2_Rtr1: Rtr1/RPAP 21.8 89 0.0019 24.1 2.7 38 327-364 20-69 (79)
266 PF09889 DUF2116: Uncharacteri 21.6 69 0.0015 23.7 1.8 18 354-372 17-34 (59)
267 PRK14700 recombination factor 20.5 8.4E+02 0.018 24.1 13.6 31 152-182 126-157 (300)
268 PF07295 DUF1451: Protein of u 20.0 52 0.0011 28.9 1.1 37 320-356 105-141 (146)
No 1
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.84 E-value=7.9e-20 Score=177.87 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=121.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHH---HHHHHHHHHcC---CCCC
Q 015393 115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQA---LYSLAVIQFNG---SGGS 185 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A---~~~Lg~~y~~G---~Gv~ 185 (408)
...+..+|+.||+.+++.|++.++++||.+|.. +.+|..+|+.||++||++|+++| ++.||.+|..| .++.
T Consensus 89 v~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 89 VSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 344578999999999999999999999999994 56899999999999999999999 99999999999 7876
Q ss_pred CCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393 186 KNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS 248 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~ 248 (408)
. +..+|+.||.+|+++|++.|++.||.+|..|.||++|.++|++||.+|+++|+..+...
T Consensus 169 ~---~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~ 228 (292)
T COG0790 169 Y---DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYN 228 (292)
T ss_pred H---HHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6 88899999999999999999999999999999999999999999999999999665554
No 2
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.75 E-value=5.8e-17 Score=157.73 Aligned_cols=131 Identities=24% Similarity=0.236 Sum_probs=121.5
Q ss_pred cCCHHHHHHHHHHHHHcCCHHH---HHHhHHHHhhc------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCC
Q 015393 116 NNWSESAHRFLKLCADAGNVEA---CYTLGMIRFYC------LQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSK 186 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G~~~A---~~~LG~~y~~~------~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~ 186 (408)
..+..+|..||++||++|++.| ++.||.+|..+ ..+..+|+.||.+|++.|++.|+++||.+|..|.||++
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCc
Confidence 4468899999999999999999 99999999843 24556999999999999999999999999999999888
Q ss_pred CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccc----------cHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 187 NDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQ----------NIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~----------d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
|+.+|+.||.+||++|+..+++.++.+|.+|.|+++ |..+|..||.++..+|...+....
T Consensus 206 ---d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 206 ---DLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence 999999999999999999999999999999999886 999999999999999999987764
No 3
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=7e-17 Score=170.81 Aligned_cols=131 Identities=27% Similarity=0.324 Sum_probs=120.6
Q ss_pred hhcCCHHHHHHHHHHHHH-------cCCHHHHHHhHHHHhh---ccC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Q 015393 114 KANNWSESAHRFLKLCAD-------AGNVEACYTLGMIRFY---CLQ-NRGSGASLMAKAAISSHAQALYSLAVIQFNGS 182 (408)
Q Consensus 114 ~~~~~~~~A~~~l~~aAe-------~G~~~A~~~LG~~y~~---~~~-d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~ 182 (408)
+...+.++|+.||+.+++ +|++.|++.||.+|.. +.. |..+|+.||.+||+.|++.|+|.||.+|+.|.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT 339 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC
Confidence 345678999999999999 9999999999999994 456 99999999999999999999999999999988
Q ss_pred CCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393 183 GGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS 248 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~ 248 (408)
..+ |+.+|++||..||..|++.|+++|+.||+.|.||++|.++|+.||++||+.|++.|...
T Consensus 340 -~~~---d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~ 401 (552)
T KOG1550|consen 340 -KER---DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL 401 (552)
T ss_pred -ccc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH
Confidence 334 99999999999999999999999999999999999999999999999999999876544
No 4
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=3e-15 Score=158.46 Aligned_cols=128 Identities=23% Similarity=0.268 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhh----ccCCHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHcCCCCCCC
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFY----CLQNRGSGASLMAKAAI-------SSHAQALYSLAVIQFNGSGGSKN 187 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~----~~~d~~~A~~~~~kAA~-------~G~~~A~~~Lg~~y~~G~Gv~~~ 187 (408)
...+..|++.+++.|+..|++.+|.+|+. +.+|.++|+.||+.||. +|++.|+|.||.+|..|.++.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 35799999999999999999999999994 56999999999999999 99999999999999999987554
Q ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 188 DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 188 ~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
|..+|+.+|.+||+.|+++|++.||.+|+.|. .++|+.+|.+||.+|+..|+..|+-..
T Consensus 308 --d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~l 366 (552)
T KOG1550|consen 308 --DYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRL 366 (552)
T ss_pred --cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHH
Confidence 89999999999999999999999999999988 679999999999999999999997663
No 5
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.46 E-value=3.5e-12 Score=113.80 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhc------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC---------
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYC------LQNRGSGASLMAKAAISSHAQALYSLAVIQFNGS--------- 182 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~------~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~--------- 182 (408)
....|++.++.+.+.+++.|+.++|++...+ ..|..+|.+||.+|++.++..|+|+|..||..|.
T Consensus 88 ~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~ 167 (248)
T KOG4014|consen 88 SLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPG 167 (248)
T ss_pred CHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCC
Confidence 3567888888999999999999999888843 3567789999999999999999999999998771
Q ss_pred -CCCCC-------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 183 -GGSKN-------DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 183 -Gv~~~-------~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
|-+.+ .+|+.+|+++--+|++++++.|+.++..||..|.||++|..+|.+|-.+|-+
T Consensus 168 ~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 168 EGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred CCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 21100 0488899999999999999999999999999999999999999888888765
No 6
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.43 E-value=1.5e-12 Score=116.02 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=120.2
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHhHHHHhh----ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 119 SESAHRFLK-LCADAGNVEACYTLGMIRFY----CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 119 ~~~A~~~l~-~aAe~G~~~A~~~LG~~y~~----~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
.++|...|+ .+-+.+++.++|.+|+.++. ..+++.+|+++|++|++.+.+.|+.++|.+..+|.-..+.+.|..+
T Consensus 51 F~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~K 130 (248)
T KOG4014|consen 51 FQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEK 130 (248)
T ss_pred HHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHH
Confidence 456666666 56788999999999999983 4589999999999999999999999999999999765555668999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcC----------CCcc----------ccHHHHHHHHHHHHHcCCHHHHhhh----
Q 015393 194 GVALCARAAFLGHIDALRELGHCLQDG----------YGVR----------QNIAEGRRFLVQANARELAAVLSSA---- 249 (408)
Q Consensus 194 A~~~~~kAA~~G~~~A~~~Lg~~y~~G----------~Gv~----------~d~~~A~~w~~kAA~~G~~~A~~~~---- 249 (408)
|.+|+.+|++.++..|++.|..||..| .|.+ +|..+|+.+-.+|.+.+++.|.++.
T Consensus 131 a~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMy 210 (248)
T KOG4014|consen 131 AERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMY 210 (248)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHH
Confidence 999999999999999999999999887 2455 9999999999999999999998875
Q ss_pred -hccCcccc
Q 015393 250 -ACQGISTR 257 (408)
Q Consensus 250 -~~~~~~~~ 257 (408)
.|.|++++
T Consensus 211 klGDGv~Kd 219 (248)
T KOG4014|consen 211 KLGDGVPKD 219 (248)
T ss_pred HccCCCCcc
Confidence 34455554
No 7
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.71 E-value=5.3e-09 Score=70.15 Aligned_cols=28 Identities=54% Similarity=1.242 Sum_probs=26.2
Q ss_pred cCCccCCccccCChhHHHhhchhhhhhhc
Q 015393 346 RRCSVCGAVNYCSRACQALDWKLRHKADC 374 (408)
Q Consensus 346 ~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C 374 (408)
.+|++|+.++|||++||+.||+ .||..|
T Consensus 10 ~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 10 KRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp EEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 5999999999999999999997 699887
No 8
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.48 E-value=2.1e-07 Score=61.19 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
.|++.||.+|..|.|+++|.++|+.||++|+++|+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 46677777777777777777777777777776664
No 9
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.43 E-value=3e-07 Score=61.70 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=25.1
Q ss_pred HHHHHHHH--HHHHcCC-CccccHHHHHHHHHHHHHcCC
Q 015393 207 IDALRELG--HCLQDGY-GVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 207 ~~A~~~Lg--~~y~~G~-Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++|++.|| .+|.+|. |+++|.++|++||++|+++||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 45677777 6667776 677777777777777777764
No 10
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.33 E-value=1e-07 Score=90.53 Aligned_cols=63 Identities=33% Similarity=0.721 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhh
Q 015393 306 HPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA 377 (408)
Q Consensus 306 ~~A~~fmkewf~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~ 377 (408)
+++...+.......... ..-..|+ .||.+.. -++||.|+.|.||+++||+.||.. ||+.|+.+
T Consensus 300 P~A~~vl~qAi~Gqr~~--~d~~fCs--tCG~~ga----~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L 362 (396)
T KOG1710|consen 300 PSAYEVLVQAIFGQRIA--ADCQFCS--TCGHPGA----KKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL 362 (396)
T ss_pred CcHHHHHHHHHcCceeE--Eeccccc--ccCCCCc----cchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence 44555555443322111 1246777 6776655 389999999999999999999995 99999977
No 11
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.32 E-value=9.3e-07 Score=58.07 Aligned_cols=36 Identities=36% Similarity=0.452 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH 206 (408)
Q Consensus 168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~ 206 (408)
+.|++.||.+|..|.|+++ |..+|+.||++||++|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~---d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKK---DLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCc---CHHHHHHHHHHHHHccC
Confidence 4689999999999999877 99999999999999885
No 12
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.26 E-value=1e-06 Score=59.03 Aligned_cols=36 Identities=36% Similarity=0.543 Sum_probs=32.0
Q ss_pred HHHHHHHH--HHHHcCC-CCCCCccCHHHHHHHHHHHHhCCC
Q 015393 168 AQALYSLA--VIQFNGS-GGSKNDKDLRAGVALCARAAFLGH 206 (408)
Q Consensus 168 ~~A~~~Lg--~~y~~G~-Gv~~~~~d~~kA~~~~~kAA~~G~ 206 (408)
++|+|.|| .+|.+|. |+++ |..+|++||++||++||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~---d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPK---DYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCH---HHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccc---cccchHHHHHHHHHccC
Confidence 58999999 8889998 7766 99999999999999986
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.23 E-value=1.7e-05 Score=82.61 Aligned_cols=121 Identities=18% Similarity=0.142 Sum_probs=87.5
Q ss_pred hhhcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc
Q 015393 113 IKANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~ 188 (408)
+.......+|+.+|.+|... .+++|++|||.+|. ..+.++.|..+|++|-+- +.+.|..|||.+|.+ .|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qg----- 402 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QG----- 402 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cc-----
Confidence 34444567788888877664 58888888888887 567788888888887765 577788888888854 34
Q ss_pred cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393 189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV 245 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A 245 (408)
++.+|+..|+.|..- ...+|+.++|..|.. -+|...|+..|.+|..-.-+.|
T Consensus 403 -nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke----~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 403 -NLDDAIMCYKEALRIKPTFADALSNMGNTYKE----MGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred -cHHHHHHHHHHHHhcCchHHHHHHhcchHHHH----hhhHHHHHHHHHHHHhcCcHHH
Confidence 677788888877664 456777777777743 5677777777777776655444
No 14
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.16 E-value=5.4e-05 Score=69.96 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHH-Hc-CCCCCCCccCHH
Q 015393 119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQ-FN-GSGGSKNDKDLR 192 (408)
Q Consensus 119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y-~~-G~Gv~~~~~d~~ 192 (408)
.++++..|+++.+ ..|+++++.||.+|. ..+++++|+..|++|... .++...+.+|.++ .. |.. +..
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~------~~~ 127 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH------MTP 127 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC------CcH
Confidence 4677777777665 479999999999998 789999999999999886 4899999999864 33 322 357
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAA 244 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~ 244 (408)
+|.++|+++... .++.+++.||..++. ..|+++|+.+|+++.+...+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC
Confidence 999999999987 689999999999986 789999999999999876553
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.07 E-value=0.0001 Score=64.49 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 015393 123 HRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCAR 200 (408)
Q Consensus 123 ~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~k 200 (408)
..+|+++.+.. |...+.+|..+. ..+++++|+.+|+++... .++.+.+++|.++.. .| ++++|+.+|++
T Consensus 13 ~~~~~~al~~~-p~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVD-PETVYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LK------EYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-Hh------hHHHHHHHHHH
Confidence 34566665543 555777888887 688999999999998877 588899999998865 44 88899999999
Q ss_pred HHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 201 AAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 201 AA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
|... +++.+.+++|.+|.. ..+.++|+..|.+|.....
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 9886 789999999999976 6789999999999987543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.07 E-value=5.4e-05 Score=78.97 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 121 SAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 121 ~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
-|+.-|++|.+. ..++|+.|||..+- ..++..+|..+|.+|... .|++|++|||.+|.. .| .++.|..
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~------~~e~A~~ 375 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QG------KIEEATR 375 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------cchHHHH
Confidence 344444444332 23444444444433 334444455555554443 245555555555532 12 3344555
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+|++|.+- +...|..+||.+|.+ ..++.+|+..|++|..
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHh
Confidence 55555442 444455555555543 3455555555555544
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.0002 Score=60.91 Aligned_cols=98 Identities=15% Similarity=0.026 Sum_probs=82.9
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID 208 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~ 208 (408)
.+..+++.+|..|+ ..+++++|.++|+++... .++.+.+++|.+|... | ++.+|+.+|+++... .++.
T Consensus 15 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~------~~~~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 15 EQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-K------EYEEAIDAYALAAALDPDDPR 86 (135)
T ss_pred hhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhcCCCChH
Confidence 47788999999988 678999999999998775 4788999999999642 3 788999999999765 4688
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
..+.+|.+|.. .++.++|..+|+++.+...
T Consensus 87 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 87 PYFHAAECLLA----LGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence 99999999975 6899999999999988643
No 18
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00048 Score=69.95 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 120 ESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 120 ~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
.+|+.-|++|.+.. |-.|+|.||+.|. .-+-+.=|+.||++|... .++.-+..||.+|.. .+ .+++|+
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~------~~~eAi 452 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LN------RLEEAI 452 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hc------cHHHHH
Confidence 34555555555543 4445555555554 334444455555555544 344455555555532 12 445555
Q ss_pred HHHHHHHhCCCH--HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 196 ALCARAAFLGHI--DALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 196 ~~~~kAA~~G~~--~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+.|.+|...|++ .+++.||.+|++ -+|.++|..+|++=.+
T Consensus 453 KCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 453 KCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence 555555555554 455555555544 3455555555555443
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.84 E-value=0.00087 Score=60.63 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHcCCCCCCCcc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SHAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
....++|..+|+++.+. .+..+.+++|.+|. ..+++++|+.+|+++... ......+++|.+|.. .|
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------ 149 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AG------ 149 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cC------
Confidence 34567889999888765 57788999999988 678999999999999874 356788889988854 34
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++.+|..+|.++... +++.+.+.+|.+|.. ..+.++|..+|+++...
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARAYLERYQQT 198 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 788999999999875 467889999999976 78899999999998775
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=97.80 E-value=0.0015 Score=69.69 Aligned_cols=110 Identities=17% Similarity=0.078 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|...++++.+. +++++...||.++. ..+++++|+.+|++|.+.. ++.+++.||.+|.. .| ++++|
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G------~~~eA 391 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AG------QLEEA 391 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence 57899999988775 68999999999987 6789999999999988774 78899999999864 35 78899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|++|.+. .++.+.+.++.++.. ..++++|+.+++++...
T Consensus 392 i~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 392 LQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHHh
Confidence 9999999886 455555555543332 24678999999998765
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.79 E-value=0.0012 Score=59.72 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|..+++++.+. .++.+.+.+|.+|. ..+++++|+++|+++.+. .+..+.+++|.+|.. .| ++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g------~~ 115 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QG------KY 115 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc------cH
Confidence 34567889999888764 57889999999998 679999999999999876 477899999999964 34 89
Q ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 192 RAGVALCARAAFL----GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 192 ~kA~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+|..+|+++... ......+.+|.+|.. ..+..+|..+|.++....
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 9999999999874 456788999999965 678999999999998754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.77 E-value=0.00052 Score=74.00 Aligned_cols=112 Identities=14% Similarity=0.039 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 118 WSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
+.++|+.+|+++.+.+ +..+.+.+|.+|+ ..+++++|+.+|++|.+. +++.+++.+|.+|.. .| +
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~ 380 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LG------D 380 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CC------C
Confidence 4668889999998765 5568889999988 688999999999999875 467889999999864 34 8
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+++|+.+|+++.+. .++.+++.+|.+|.. ..|+++|+.+|++|.+..
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 88999999999876 578999999999975 678999999999998764
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.76 E-value=0.0016 Score=73.81 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 117 NWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
...++|+.+|+++.+.. ++.+.+++|.++. ..+++++|+.+|++|.+. +++.++++||.++.. .| ++++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G------~~ee 661 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SG------DIAQ 661 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHH
Confidence 45678888888887643 5888999998887 678999999999998877 488999999988865 34 7889
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
|+..|++|.+. +++.+.++||.+|.. ..|+++|+.+|++|.+..-
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQR----LDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC
Confidence 99999999886 689999999999965 7889999999999987543
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.69 E-value=0.0021 Score=69.34 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+..|+++.+. .++++++.+|.+|+ ..+++++|+.+|++|.+.. +..++++||.+|.. .| ++++|
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~~~eA 452 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EG------SIASS 452 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CC------CHHHH
Confidence 34555555554443 34555555555554 3455555555555555442 44555555555532 22 45555
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+..|+++... .++.+.+.+|.+|.. ..++++|+..|++|...
T Consensus 453 ~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhc
Confidence 5555555443 345555555555543 34555555555555543
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0012 Score=66.99 Aligned_cols=93 Identities=22% Similarity=0.196 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAK--AAISSHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~k--AA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
+.++|..+|+.|... ...+|.|++|+.|. ..++.++|+++|-| |.-.++++.++.++.+|..- .|..+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~l-------ed~aq 576 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL-------EDPAQ 576 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------hCHHH
Confidence 478999999988754 36789999999998 78999999999977 77889999999999999742 38889
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQ 218 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~ 218 (408)
|++||.++-.. .++.-...||.+|.
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 99999999775 67878888888874
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0024 Score=65.03 Aligned_cols=113 Identities=15% Similarity=0.063 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.||++|... +...|.-.+|-=|. .-+|...|++-|++|.+-. +-.|+|.||..|.-- + -..-|
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-~------Mh~Ya 417 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM-K------MHFYA 417 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-c------chHHH
Confidence 78999999999875 57789999998887 5799999999999999886 677999999999642 2 45689
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
+.||++|.+. .|..-...||.||.. -..+++|++.|.+|...|++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhcccc
Confidence 9999999986 789999999999965 56889999999999999998
No 27
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.63 E-value=0.0017 Score=63.68 Aligned_cols=114 Identities=11% Similarity=-0.020 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+..|+++.+. .++.+.+++|.+|. ..+++++|+..|.+|.+. ++..+++++|.+|.. .| +++
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g------~~~ 149 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GG------RYE 149 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHH
Confidence 3455677777766654 46777777777776 567777777777777665 467777777777754 23 667
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|++.|+++....-.+....+...+. ....+.++|+.+|.+++...
T Consensus 150 eA~~~~~~al~~~P~~~~~~~~~~l~---~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 150 LAQDDLLAFYQDDPNDPYRALWLYLA---ESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH---HccCCHHHHHHHHHHHHhhC
Confidence 77777777776643222222222111 12346777777777666443
No 28
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.00091 Score=59.99 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=76.4
Q ss_pred HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-
Q 015393 131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL- 204 (408)
Q Consensus 131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~- 204 (408)
..+...+.+++|..|. ..+++++|+.+|++|.... .+.++++||.+|.. .| ++++|+.+|++|...
T Consensus 31 ~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g------~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NG------EHDKALEYYHQALELN 102 (172)
T ss_pred HhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhC
Confidence 4467778899999987 6899999999999998653 25789999999965 44 888999999999886
Q ss_pred -CCHHHHHHHHHHHHcCCC---ccccHHHHHHHHHHHHH
Q 015393 205 -GHIDALRELGHCLQDGYG---VRQNIAEGRRFLVQANA 239 (408)
Q Consensus 205 -G~~~A~~~Lg~~y~~G~G---v~~d~~~A~~w~~kAA~ 239 (408)
.++.+...+|.+|..-.- -..+.++|+..|.+|.+
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~ 141 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAE 141 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHH
Confidence 678899999998854211 12455555555555543
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.0011 Score=58.84 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=72.4
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
..+..|.+|..++ ..++++.|...|+..+... ++...|+||.++.. .| ++++|+..|.+|... .++.+
T Consensus 34 ~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g------~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 34 PLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QK------HWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCchH
Confidence 3456666776665 6788888888888877664 67778888888853 33 788888888888775 68888
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+++|.+|+. -.|++.|++-|+.|...-
T Consensus 106 ~~~ag~c~L~----lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLA----CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 8888888876 568888888888887754
No 30
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.56 E-value=0.0016 Score=56.94 Aligned_cols=93 Identities=13% Similarity=-0.011 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++... .++.+.+++|.++. ..+++++|+.+|++|... +++.+.+++|.+|.. .| +++
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g------~~~ 109 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MG------EPG 109 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHH
Confidence 3456788899888765 68999999999998 689999999999999986 699999999999975 35 889
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
+|+..|++|... +++.....+|...
T Consensus 110 eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 110 LAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999886 6777777776654
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=97.56 E-value=0.002 Score=68.73 Aligned_cols=112 Identities=10% Similarity=-0.024 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. +++.+.+.||.+|. ..+++++|+.+|++|.+.. ++.+.+.++.++.. .| +++
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g------~~e 423 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HT------GID 423 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cc------CHH
Confidence 3467899999988765 48899999999998 6799999999999998874 55566665554433 34 678
Q ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 193 AGVALCARAAFL---GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 193 kA~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|+.+++++... +++.+.+.||.+|.. ..+.++|+.++.+....
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhhc
Confidence 999999999764 578889999999954 68999999999886543
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.52 E-value=0.0018 Score=53.01 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C--
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G-- 205 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G-- 205 (408)
+++.|.+|..++ ..+++++|+..|+++.... + +.+.+.+|.+|.. .| ++.+|+.+|+++... +
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QG------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHHCCCCC
Confidence 467889999988 6899999999999998753 2 5789999999965 33 888999999999874 2
Q ss_pred -CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 206 -HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 206 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+.+.+.+|.+|.. ..+..+|..+|.++.+..
T Consensus 74 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 74 KAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHC
Confidence 36789999999976 688999999999998863
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.48 E-value=0.011 Score=59.27 Aligned_cols=110 Identities=20% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcC--C-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCcc
Q 015393 119 SESAHRFLKLCADAG--N-----VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G--~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
.++|+.++++..+.+ + ...++.||.+|. ..+++++|+.+|+++.+.. +..+.+.||.+|.. .|
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------ 228 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QG------ 228 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CC------
Confidence 466777777665542 2 223456677666 5677788888888776543 66777778777754 34
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 190 DLRAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 190 d~~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+++|+++.+.+. ..++..|+.+|.. ..+.++|+.+++++...
T Consensus 229 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 229 DYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEE 278 (389)
T ss_pred CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 67778888888776532 3456667777754 45777788877777664
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.46 E-value=0.0044 Score=60.73 Aligned_cols=111 Identities=15% Similarity=0.041 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 120 ESAHRFLKLCADA------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 120 ~~A~~~l~~aAe~------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
+.++.-+.+..+. +.+...+.+|.+|. ..++..+|+..|++|.+. .++.+++++|.+|.. .| ++
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g------~~ 114 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AG------NF 114 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC------CH
Confidence 4445555444432 34677889999887 678899999999998876 478899999988854 34 88
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++|+..|.+|.+. ++..+++++|.+|.. .++.++|+..|+++.+...
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 8999999999876 678899999998865 4688899999999887653
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.35 E-value=0.013 Score=67.85 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHH--------------HHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQ--------------ALYSLAVI 177 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~--------------A~~~Lg~~ 177 (408)
....++|+..|+++.+. .++++.+.||.+|+ ..+++++|+.+|++|.+.. +.. ....+|.+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 44568899999988774 68999999999998 6899999999999998754 211 11233444
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.. .| ++.+|+.+|+++... .++.+.+.||.+|.. ..+.++|+.+|++|.+.
T Consensus 361 ~~~-~g------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 361 ALK-AN------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHH-CC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 432 33 889999999999886 678899999999976 67999999999999874
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.33 E-value=0.00094 Score=50.09 Aligned_cols=64 Identities=30% Similarity=0.362 Sum_probs=53.8
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
++..++.+|.+++ ..+++++|+.+|++|.+.. ++.+++++|.+|..- | + ++.+|++.|++|.+.
T Consensus 2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~--~---~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-G--K---DYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-T--T---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-C--c---cHHHHHHHHHHHHHc
Confidence 5788899999998 6899999999999998774 889999999999753 2 1 588999999998753
No 37
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.33 E-value=0.003 Score=47.57 Aligned_cols=92 Identities=21% Similarity=0.186 Sum_probs=73.5
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE 212 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~ 212 (408)
+++.+|.+|+ ..+++++|+.+|+++.+.. +..+.+.+|.+|..- + ++.+|+.+|+++... .+..+.+.
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-G------KYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhCCCcchhHHHH
Confidence 5678888887 5789999999999988754 457888999998652 2 788999999998875 45668889
Q ss_pred HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 213 LGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|.++.. ..+.++|..++.++...
T Consensus 74 ~~~~~~~----~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYK----LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHH----HHhHHHHHHHHHHHHcc
Confidence 9988865 56788999999887653
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.33 E-value=0.0067 Score=66.31 Aligned_cols=114 Identities=12% Similarity=-0.051 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|..||+.+.+. .+..|..+++.++. -.+.+++|+.+++++.... ++.+++.+|..+.. .| .++
T Consensus 100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g------~~~ 171 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IG------QSE 171 (694)
T ss_pred CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hc------chH
Confidence 3468899999988764 79999999999988 6889999999999998775 99999999999853 56 788
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+|...|++++.. +++.++..+|+.+.+ ..+.++|..-|++|.+.-.
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhC
Confidence 999999999965 468999999999976 6789999999999988644
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.28 E-value=0.0064 Score=70.49 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC--------
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG-------- 184 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv-------- 184 (408)
...++|+.+|+++.+. .++.+.+.||.+|. ..+++++|+++|++|.+. ++..+.+.|+.+|..+.--
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3467899999988765 68899999999998 789999999999999874 5788888888887532100
Q ss_pred -C--------------------------CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q 015393 185 -S--------------------------KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLV 235 (408)
Q Consensus 185 -~--------------------------~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~ 235 (408)
. ....++++|+++|++|.+. .++.+.+.||.+|.. ..+.++|+..|+
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~~~l~ 519 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQADALMR 519 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 0 0012788999999999876 678999999999976 678999999999
Q ss_pred HHHHc
Q 015393 236 QANAR 240 (408)
Q Consensus 236 kAA~~ 240 (408)
++.+.
T Consensus 520 ~al~~ 524 (1157)
T PRK11447 520 RLAQQ 524 (1157)
T ss_pred HHHHc
Confidence 99874
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.0035 Score=63.18 Aligned_cols=93 Identities=17% Similarity=0.061 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|.++.+. .++.+++++|.+|+ ..+++++|+.++++|.+. .++.++++||.+|.. .| ++.
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg------~~~ 87 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LE------EYQ 87 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hC------CHH
Confidence 3457888888888765 57888999999888 678899999999998776 478899999988864 45 888
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
+|+.+|+++... ++..++..++.+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999876 5788877777775
No 41
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0061 Score=54.29 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=70.2
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--C---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--S---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH 206 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~ 206 (408)
...+.+++|..+. ..+++++|+.+|++|... + .+.++++||.+|.. .| ++++|+..|++|... .+
T Consensus 34 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g------~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 34 EAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NG------EHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCc
Confidence 3456678888887 678899999999999755 3 23589999999975 34 788999999999864 56
Q ss_pred HHHHHHHHHHHHcCCC----ccccHHHHHHHHHHHH
Q 015393 207 IDALRELGHCLQDGYG----VRQNIAEGRRFLVQAN 238 (408)
Q Consensus 207 ~~A~~~Lg~~y~~G~G----v~~d~~~A~~w~~kAA 238 (408)
..+..++|.+|.. .| -..+..+|..+|.+|.
T Consensus 106 ~~~~~~la~i~~~-~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 106 PQALNNMAVICHY-RGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHH-hhHHHHHcccHHHHHHHHHHHH
Confidence 7888888888862 11 3456665655555554
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.23 E-value=0.016 Score=63.40 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|..++++..+ ..++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.++.+||.+|... | + .
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~------~-~ 820 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL-K------D-P 820 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C------c-H
Confidence 345667777776654 357788888888887 577888888888887766 3677788888887642 2 4 5
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+|+.+|+++.+. +++.....+|.+|.. ..+.++|..+|++|.+.+.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVE----KGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence 688888888765 677777888888755 5678888888888887654
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0043 Score=63.05 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=75.5
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH--HhCCCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARA--AFLGHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kA--A~~G~~~A 209 (408)
|+.|+.+-|.+-+ ..+|+++|+++|+.|.... ..+|+|++|..|.. .| ++++|+++|.+- .-.++++-
T Consensus 489 n~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~------~ldeald~f~klh~il~nn~ev 560 (840)
T KOG2003|consen 489 NAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LG------NLDEALDCFLKLHAILLNNAEV 560 (840)
T ss_pred CHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hc------CHHHHHHHHHHHHHHHHhhHHH
Confidence 4444444444433 4589999999999998765 67899999999853 45 899999999874 55799999
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+.|+.+|+- -.|..+|++||.+|...
T Consensus 561 l~qianiye~----led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 561 LVQIANIYEL----LEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHH----hhCHHHHHHHHHHhccc
Confidence 9999999954 68999999999999763
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.20 E-value=0.0071 Score=60.99 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=75.6
Q ss_pred HhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393 140 TLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGH 215 (408)
Q Consensus 140 ~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~ 215 (408)
..|..++ ..+++.+|+++|++|.+. +++.+++++|.+|.. .| ++.+|+.+|++|.+. .++.+++.||.
T Consensus 7 ~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g------~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LG------NFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 3455555 689999999999999877 489999999999975 44 899999999999886 68999999999
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 216 CLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 216 ~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|+. .| ++++|+.+|++|....
T Consensus 79 ~~~~-lg---~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 79 ACMK-LE---EYQTAKAALEKGASLA 100 (356)
T ss_pred HHHH-hC---CHHHHHHHHHHHHHhC
Confidence 8865 45 6889999999999764
No 45
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.18 E-value=0.022 Score=62.18 Aligned_cols=111 Identities=10% Similarity=-0.006 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHH----HHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCcc
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRG----SGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~----~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
..++|+..|+++.+. +++.+.++||.+|. ..++++ +|+.+|++|.+. +++.+..+||.+|.. .|
T Consensus 227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g------ 298 (656)
T PRK15174 227 KYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TG------ 298 (656)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC------
Confidence 345566666655543 35666666676666 233333 366666666654 356666666666643 23
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+.+|+++.+. .++.+.+.||.+|.. ..++++|+..|+++.+.
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~----~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQ----VGQYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 566666666666654 455666666666644 45666666666666643
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.18 E-value=0.013 Score=58.83 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc
Q 015393 117 NWSESAHRFLKLCADAGN------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~ 188 (408)
...++|+.+++++.+.++ ..+.+.||.+|. ..+++++|+.+|+++.+. .+..+...|+.+|.. .|
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g----- 155 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-EK----- 155 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-hc-----
Confidence 345677777777666543 245677777776 567888888888887764 356677777777754 33
Q ss_pred cCHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 189 KDLRAGVALCARAAFLGHI-------DALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++++|+++|+++...+.. ..+..||.+|.. ..+.++|..+|+++.+...
T Consensus 156 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 156 -DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKALAADP 211 (389)
T ss_pred -hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCc
Confidence 777888888887765421 134456666654 6888888888888887654
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.17 E-value=0.021 Score=62.25 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=93.8
Q ss_pred hcCCHH---HHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCC
Q 015393 115 ANNWSE---SAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKN 187 (408)
Q Consensus 115 ~~~~~~---~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~ 187 (408)
.+.+.+ +|+.+|+++.+ ..++.+.++||.+|. ..+++++|+.+|+++.+. .++.+.++||.+|.. .|
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G---- 332 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VG---- 332 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC----
Confidence 344544 58999998876 468899999999998 688999999999999876 488899999999965 45
Q ss_pred ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 188 DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 188 ~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+..|+++.+. .++.+.+.+|.+|.. ..+.++|+.+|+++.+.
T Consensus 333 --~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~----~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 333 --QYTAASDEFVQLAREKGVTSKWNRYAAAALLQ----AGKTSEAESVFEHYIQA 381 (656)
T ss_pred --CHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 889999999999876 345566667887754 57899999999999876
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.0033 Score=66.38 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
+.+.|+++|++|... +...|+-.+|-=+. ...++++|..+|++|..- .|--|+|-||.+|..- + -++.
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-e------k~e~ 507 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-E------KLEF 507 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-c------hhhH
Confidence 577899999988654 56777777775554 457788999999998765 4888999999999642 2 4778
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 194 GVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 194 A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
|...|++|.+-+ +..-+..+|.+|+. -+..++|+.+|++|+-...
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCC
Confidence 888999998864 45556677888865 6788899999999986543
No 49
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.011 Score=50.19 Aligned_cols=96 Identities=23% Similarity=0.154 Sum_probs=72.2
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C--
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSH-----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G-- 205 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~-----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G-- 205 (408)
|++.|.++.+|. ..++.++|+.+|++|.+.|- ..+...||..|.+ .| .+++|+.+++++... +
T Consensus 1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG------~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LG------RYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCCcc
Confidence 357888888887 67888999999999988873 4477788888864 56 788999999988865 3
Q ss_pred -CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 206 -HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 206 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+......+++.+.+ ....++|+.|+..+.....
T Consensus 73 ~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la~~~ 106 (120)
T PF12688_consen 73 LNAALRVFLALALYN----LGRPKEALEWLLEALAETL 106 (120)
T ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 44566667777655 5677889999888776433
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.97 E-value=0.082 Score=60.19 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 116 NNWSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
....++|..+|+++.+.. +....+.|+..+. ..+++++|+.+|++|.+.. ++.+.+++|.++.. .| +++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~-lG------~~d 626 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPSANAYVARATIYRQ-RH------NVP 626 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC------CHH
Confidence 445678999999887764 3333333332222 3589999999999999753 58899999999865 45 889
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|+.+|++|... +++.+.++||.++.. ..+.++|+..|++|.+..
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 999999999987 689999999999976 578999999999999763
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.0045 Score=64.52 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHH
Q 015393 123 HRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVAL 197 (408)
Q Consensus 123 ~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~ 197 (408)
..||..+-+.+ +++.+..||.+|. ..+++++|+..|+.|..-. +..-+..||-.+.+|. ..++|+.-
T Consensus 415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-------~s~EAIsA 486 (579)
T KOG1125|consen 415 ELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN-------RSEEAISA 486 (579)
T ss_pred HHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-------ccHHHHHH
Confidence 45555555665 7999999999998 7899999999999998774 6677889999999875 34689999
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 198 CARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 198 ~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
|.+|.++ |++++-|+||+.|.+ -..+.+|.++|..|..
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mN----lG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMN----LGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhh----hhhHHHHHHHHHHHHH
Confidence 9999998 999999999999987 6789999999999886
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.94 E-value=0.018 Score=53.82 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHc--CCH---HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHcCCC-CCC
Q 015393 118 WSESAHRFLKLCADA--GNV---EACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA---QALYSLAVIQFNGSG-GSK 186 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~---~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~---~A~~~Lg~~y~~G~G-v~~ 186 (408)
..++|+..|++.... .++ .+.+.+|.+|+ ..+++++|+..|+++.+.. ++ .++|.+|.+|..-.+ +..
T Consensus 48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~ 126 (235)
T TIGR03302 48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDR 126 (235)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccC
Confidence 356788888877664 343 68899999998 7899999999999998763 33 489999999976421 111
Q ss_pred CccCHHHHHHHHHHHHhC--CCHHH---H--------------HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 187 NDKDLRAGVALCARAAFL--GHIDA---L--------------RELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~--G~~~A---~--------------~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
...+..+|++.|+++... .+..+ . +.+|.+|+. ..+..+|+.+|+++.+.
T Consensus 127 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 127 DQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK----RGAYVAAINRFETVVEN 195 (235)
T ss_pred CHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 223788999999999874 23222 2 355666654 57899999999999875
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.89 E-value=0.015 Score=49.28 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|..+|+++.+ ..++.+.+.+|.+|. ..+++.+|+.+|+++...+ ++...+.+|.+|.. .| +.++
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g------~~~~ 103 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LG------EPES 103 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cC------CHHH
Confidence 35788899988766 458899999999998 5788999999999997665 68899999999974 44 8999
Q ss_pred HHHHHHHHHhCC
Q 015393 194 GVALCARAAFLG 205 (408)
Q Consensus 194 A~~~~~kAA~~G 205 (408)
|+.+|+++.+..
T Consensus 104 A~~~~~~al~~~ 115 (135)
T TIGR02552 104 ALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhc
Confidence 999999998864
No 54
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.88 E-value=0.0044 Score=46.35 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccc-cHHHHHHHHHHHHHc
Q 015393 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQ-NIAEGRRFLVQANAR 240 (408)
Q Consensus 167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~-d~~~A~~w~~kAA~~ 240 (408)
++..++.+|.+|.. .| ++.+|+.+|.+|.+. .++.+++++|.+|.. .. +.++|+..|++|.+.
T Consensus 2 ~a~~~~~~g~~~~~-~~------~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ-QG------DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHc
Confidence 57788999999976 34 899999999999986 678999999999976 33 799999999999763
No 55
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.84 E-value=0.016 Score=51.43 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=68.9
Q ss_pred hcCCHHHHHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 115 ANNWSESAHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
.....++|..+|+..+ +..+++..|+||.++. ..+++.+|++.|.+|... .+|.+.+++|.+|+.. | |
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l-G------~ 118 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC-D------N 118 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc-C------C
Confidence 3445678888888665 5568999999999998 789999999999999876 5999999999999864 4 7
Q ss_pred HHHHHHHHHHHHhC
Q 015393 191 LRAGVALCARAAFL 204 (408)
Q Consensus 191 ~~kA~~~~~kAA~~ 204 (408)
...|.+-|+.|...
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999988765
No 56
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.81 E-value=0.0048 Score=47.44 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=49.2
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~ 203 (408)
..++++||.+|. ..+++++|+.+|++|.+. | .+.++++||.+|.. .| ++++|+++|++|.+
T Consensus 5 a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g------~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LG------DYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHh
Confidence 357889999998 789999999999999844 2 25688899999964 45 89999999999865
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.79 E-value=0.048 Score=48.76 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCcc
Q 015393 117 NWSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
...++|+.+|+++.+.. .+.+.++||.+|. ..+++++|+.+|++|... .++.+.+.+|.+|..-.-......
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence 45678999999888653 2579999999998 689999999999999886 578899999999865322111122
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 190 DLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 190 d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+..+|+..|.+|.+ .+.-+.- .-+.|...+..|+..+.+
T Consensus 128 ~~~~A~~~~~~A~~------~~~~a~~-----~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 128 DQDEAEALFDKAAE------YWKQAIR-----LAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred CHHHHHHHHHHHHH------HHHHHHh-----hCchhHHHHHHHHHhcCc
Confidence 56666666666543 1111111 124556666666665544
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.77 E-value=0.018 Score=54.04 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
..+...|..-+++|.+ ..+..|+..++.+|. -.+..+.|.+.|++|... ++.+-..|.|.++. +.| -+
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg------~~ 119 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQG------RP 119 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCC------Ch
Confidence 3456778888887765 457888888888887 577888888899988765 56777888887774 344 57
Q ss_pred HHHHHHHHHHHhC---C-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL---G-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~---G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++|..||++|.+. | .++..-++|.|-.. ..+..+|.++|++|.+.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHh
Confidence 7888999998886 3 35677788888865 56788888889888874
No 59
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.73 E-value=0.11 Score=56.74 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|..+|+++.+. .++.+++.++.+++ ..+++++|+.+++++... .++.+.+.+|.+|.. .| +++
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~ 210 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LG------NIE 210 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cC------CHH
Confidence 3456788888877653 46777888887776 567788888888877654 366777778777754 33 677
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+|..+|+++.+. +++.+.+.++.++.. ..+.++|..++.++.+
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIE----AGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 788888887664 456677777776644 3355555555555543
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.59 E-value=0.056 Score=50.78 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCccC
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
.-.+.|.+.|++|... ++.+-..|.|.++. ..+.+++|..||++|.+.- .+...-|+|++-+. -| .
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~g------q 154 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AG------Q 154 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cC------C
Confidence 3367788888887654 57778888888777 5678888888888888773 45677788888764 23 5
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS 248 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~ 248 (408)
..+|.++|++|.+. .++.+...|+.+... +.|+..|..++++-...|.+.|-+-
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYK----AGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHh----cccchHHHHHHHHHHhcccccHHHH
Confidence 66888888888775 577788888888765 7788888888888888877655443
No 61
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.56 E-value=0.04 Score=53.27 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=79.6
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--- 204 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--- 204 (408)
++..+.|..+.-++...+++++|+..|++....- + +.|+|.||.+|+. .| ++.+|+.+|++....
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g------~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KG------KKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCC
Confidence 3457788887766435689999999999988752 2 5799999999975 34 899999999999964
Q ss_pred --CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 205 --GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 205 --G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
-.++|++.||.+|.. ..|..+|+..|++..+.
T Consensus 213 s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 SPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 358899999999975 57999999999998875
No 62
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.54 E-value=0.008 Score=44.47 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=45.9
Q ss_pred HHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 139 YTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 139 ~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
|.+|..|+ ..+++++|+..|+++.+.. ++.+++.||.++.. .| ++.+|+.+|+++.+.
T Consensus 1 ~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QG------RYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHH
T ss_pred ChHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHH
Confidence 45777777 6788999999999988875 88899999999874 44 788899999888754
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.039 Score=60.77 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 119 SESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
.+.+..+..-+...- -++++|.+|..|. ..+|+++|+.||.+|... ++.-+.+-||.||.. .| |
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~~------d 357 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-RG------D 357 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-hc------h
Confidence 344555544443322 4567899999987 788999999999887654 347788889988864 33 7
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++.+...|++-..+ ++.+.+..||.+|..---.+--..+|..+..++.+.-
T Consensus 358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888875 7888888888888643112223345555555555443
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.46 E-value=0.058 Score=59.89 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. +++.+.+.|+.++. ..+++++|+.+++++.+. .++. .+.||.+|.. .| +.+
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g------~~~ 133 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AG------RHW 133 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CC------CHH
Confidence 3456888999887554 78999999999988 689999999999998875 4777 8999999864 34 888
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+|+..|+++.+. +++.+.+.++.++.. ....++|+..++++..
T Consensus 134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~----~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 134 DELRAMTQALPRAPQTQQYPTEYVQALRN----NRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHhCCC
Confidence 999999999886 689999999999976 3677789988887775
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.44 E-value=0.066 Score=49.40 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccC--CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCcc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQ--NRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~--d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
.+..++|+..|+++... .+++..+.+|.+++...+ ...+|.+.|++|.... ++.++++||..++. .|
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g------ 158 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA------ 158 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC------
Confidence 34568899999988764 589999999986532333 3699999999998774 89999999999975 45
Q ss_pred CHHHHHHHHHHHHhCCCH
Q 015393 190 DLRAGVALCARAAFLGHI 207 (408)
Q Consensus 190 d~~kA~~~~~kAA~~G~~ 207 (408)
|+++|+.+|+++.+...+
T Consensus 159 ~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 159 DYAQAIELWQKVLDLNSP 176 (198)
T ss_pred CHHHHHHHHHHHHhhCCC
Confidence 899999999999887544
No 66
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.44 E-value=0.017 Score=45.16 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHhHHHHhhccCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Q 015393 120 ESAHRFLKLCADAGN----VEACYTLGMIRFYCLQNRGSGASLMAKA-AISSHAQALYSLAVIQF 179 (408)
Q Consensus 120 ~~A~~~l~~aAe~G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kA-A~~G~~~A~~~Lg~~y~ 179 (408)
+.|+.++++..+... ....+.||.+|+ ..+++++|+.++++. ....++...+.+|.+|.
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL 69 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 444444444443322 223333455554 345555555555441 11123445555555443
No 67
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.064 Score=59.14 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
..+++..+.++-. ..||.+...|+..|+ ..+|+..+..+++-|...- -+++.|+||.+|.. .| |+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha-~G------d~ 323 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA-QG------DF 323 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh-hc------cH
Confidence 4578888887754 458999999999887 6899999999998887664 35679999999964 56 99
Q ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL---GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++|+.||.+|... +++-+.+-||.||.. ..|++.+...|++-..+
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHh
Confidence 9999999999764 448899999999976 78999999999998875
No 68
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.39 E-value=0.012 Score=60.33 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHH---HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 130 ADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQ---ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 130 Ae~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~---A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
++..+++++++||..|+ ..+++++|+.+|++|.+.. +++ |+||+|.+|.. .| ++++|+..|++|.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LG------r~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-RE------EGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHh
Confidence 67789999999999998 6899999999999998874 554 49999999965 45 889999999999987
Q ss_pred CCH
Q 015393 205 GHI 207 (408)
Q Consensus 205 G~~ 207 (408)
+++
T Consensus 142 sn~ 144 (453)
T PLN03098 142 YNL 144 (453)
T ss_pred cch
Confidence 543
No 69
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.37 E-value=0.029 Score=54.58 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=66.4
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC----
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---- 204 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---- 204 (408)
+....+.+|. ..++.+|+.+|++|++. |. +..+..+|.+|....| |+++|+++|++|++.
T Consensus 77 ~~~~Aa~~~k--~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~------d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 77 AYEEAANCYK--KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG------DYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHC
Confidence 3344455554 44999999999999854 54 5578899999976545 899999999999984
Q ss_pred CCH----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 205 GHI----DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 205 G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.. .....+|.++.. ..++.+|+..|++.+..
T Consensus 149 ~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 432 345567777754 45999999999998864
No 70
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.36 E-value=0.0023 Score=44.71 Aligned_cols=42 Identities=24% Similarity=0.580 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh
Q 015393 58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS 104 (408)
Q Consensus 58 f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~ 104 (408)
+..||+|++..||+.+ ++.|+.++.++||.|+....++.++.
T Consensus 1 i~~LP~Eil~~If~~L-----~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-----DPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS------HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 4689999999999876 57799999999999999987765544
No 71
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.32 E-value=0.035 Score=53.47 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 119 SESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 119 ~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
.+++..+++++.+. .++...+.+|.+|. ..++.++|+++|++|.+. +++++...|+.++.. .| +..
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~------~~~ 197 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MG------DYD 197 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC------HHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC------ChH
Confidence 45666676664432 46677777888877 577888888888888876 367777778777742 23 444
Q ss_pred H---HHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 193 A---GVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 193 k---A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+ ++.-+.+.. ..++.-...||.+|.. -.+.++|+.||+++...
T Consensus 198 ~~~~~l~~~~~~~-~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 198 EAREALKRLLKAA-PDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHH--HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCHHHHHHHHHHHhcc----ccccccccccccccccc
Confidence 4 444444444 2455566677777765 56788888888888873
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.27 E-value=0.32 Score=54.10 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+..|.++.. .....+...+|.+|. ..+++++|+.+|+++.+. +++.+.+.|+.++.. .| ++.+
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g------~~~e 101 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AG------QYDE 101 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHH
Confidence 45677777777764 344556888888887 678888999999887666 578888888888854 33 7788
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|+.+++++.+. .++. .+.||.+|.. ..+.++|+..|+++.+.
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKR----AGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 88999888775 5677 8888888865 67888888888888875
No 73
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.26 E-value=0.047 Score=53.05 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCcc
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
..+.|..+|.+|+ ..|. ..+++++|.+.|.+|++. ++ ..+....+.+|..+
T Consensus 30 ~~e~Aa~~y~~Aa------------~~fk-~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-------- 88 (282)
T PF14938_consen 30 DYEEAADLYEKAA------------NCFK-LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-------- 88 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHH-HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--------
T ss_pred CHHHHHHHHHHHH------------HHHH-HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--------
Confidence 3567788887774 3343 567888888888888754 22 34556677777654
Q ss_pred CHHHHHHHHHHHHh----CCCH----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 190 DLRAGVALCARAAF----LGHI----DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 190 d~~kA~~~~~kAA~----~G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++.+|+.+|++|++ .|.+ ..+.++|.+|..-. .|+++|+++|++|++.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAEL 144 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 77899999999987 4764 46888999997621 6999999999999974
No 74
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.26 E-value=0.013 Score=44.88 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL----GH-----IDALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~----G~-----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
+.++.+||.+|. ..| ++++|+.+|++|.+. |+ +.+.++||.+|.. ..|.++|+.+|++|.
T Consensus 5 a~~~~~la~~~~-~~~------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYR-ELG------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHH-HTT-------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcC------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 457889999997 455 899999999999852 32 4578999999966 789999999999997
Q ss_pred H
Q 015393 239 A 239 (408)
Q Consensus 239 ~ 239 (408)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 5
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.23 E-value=0.054 Score=48.14 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQF 179 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~ 179 (408)
...++|+.+|+++.... .+.+.++||.+|. ..+++++|+.+|++|... .+..+.++||.+|.
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34678999999997652 2458999999999 689999999999999865 46788999999886
No 76
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.059 Score=52.37 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=90.1
Q ss_pred HHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-
Q 015393 128 LCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL- 204 (408)
Q Consensus 128 ~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~- 204 (408)
.+.+.+|++-+..||.+|+ ..++...|+.-|.+|... .+++..-.+|.++....| .+ +..++...|++|...
T Consensus 149 L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~---~ta~a~~ll~~al~~D 223 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQ---MTAKARALLRQALALD 223 (287)
T ss_pred HHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Cc---ccHHHHHHHHHHHhcC
Confidence 3467799999999999999 689999999999999976 478888888877655543 22 677999999999986
Q ss_pred -CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393 205 -GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAA 244 (408)
Q Consensus 205 -G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~ 244 (408)
.++.+++.||..++. +.|+.+|+..+++=.+...+.
T Consensus 224 ~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 224 PANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCC
Confidence 689999999999987 889999999998877755443
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.16 E-value=0.037 Score=43.27 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHcCCCc
Q 015393 149 LQNRGSGASLMAKAAISSH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA-FLGHIDALRELGHCLQDGYGV 223 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA-~~G~~~A~~~Lg~~y~~G~Gv 223 (408)
.++++.|+.+|++..+... ....+.||.+|.. .| ++.+|+.++++.- ...++...+.+|.+|.. .|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~------~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~-l~- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QG------KYEEAIELLQKLKLDPSNPDIHYLLARCLLK-LG- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TT------HHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH-TT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CC------CHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-hC-
Confidence 4678899999999877653 4567778999976 34 8899999997753 44677899999998865 23
Q ss_pred cccHHHHHHHHHHH
Q 015393 224 RQNIAEGRRFLVQA 237 (408)
Q Consensus 224 ~~d~~~A~~w~~kA 237 (408)
+.++|+..|++|
T Consensus 73 --~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 --KYEEAIKALEKA 84 (84)
T ss_dssp ---HHHHHHHHHHH
T ss_pred --CHHHHHHHHhcC
Confidence 478888888775
No 78
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.14 E-value=0.025 Score=41.77 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 172 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 172 ~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.+|..|.. .| ++++|+..|+++... +++++.+.||.++.. .+++++|+.+|+++.+.
T Consensus 1 ~~~a~~~~~-~g------~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQ-QG------DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHH-CT------HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHH-cC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 466777754 34 899999999999987 589999999999986 78999999999999864
No 79
>PRK11906 transcriptional regulator; Provisional
Probab=96.08 E-value=0.11 Score=53.68 Aligned_cols=116 Identities=12% Similarity=0.001 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHH-----HcCCHHHHHHhHHHHhh--------ccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCC
Q 015393 119 SESAHRFLKLCA-----DAGNVEACYTLGMIRFY--------CLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSG 183 (408)
Q Consensus 119 ~~~A~~~l~~aA-----e~G~~~A~~~LG~~y~~--------~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~G 183 (408)
.+.|..+|.+|. +.+.+.|+..|+..|+. .+.+..+|++.-++|.+.+ ++.|.+.+|.++.. .|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-SG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hc
Confidence 467888999998 44578899999988872 2467779999999998875 88899999997643 22
Q ss_pred CCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393 184 GSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV 245 (408)
Q Consensus 184 v~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A 245 (408)
++..|..||++|... +.+.+.|.+|..... ..+.++|+++.++|....-...
T Consensus 353 ------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 353 ------QAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred ------chhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhh
Confidence 577899999999987 578889999987743 6789999999999998765444
No 80
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.04 Score=58.44 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.|+|..+|++|.. --|..|+|.||++|+ -+..++.|.-+|+||.+-+ +..-+..+|.+|.. .| ..++|
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k------~~d~A 542 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LK------RKDKA 542 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hh------hhhHH
Confidence 6789999998865 458899999999999 5677899999999999885 45556667777754 23 66799
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|++|+-. -++-..|.-|.+++. -.+..+|+.-+++--+.
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~----~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFS----LGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHh----hcchHHHHHHHHHHHHh
Confidence 9999999977 578899999999964 45777888888765553
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.02 E-value=0.088 Score=45.69 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-c----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-CHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISS-H----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG-HID 208 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G-~~~ 208 (408)
..|.+.||.+++ ..+++++|+..|+++.+.. + +.|.+.|+.++.. .| ++++|+..+....... .+.
T Consensus 48 ~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~------~~d~Al~~L~~~~~~~~~~~ 119 (145)
T PF09976_consen 48 ALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QG------QYDEALATLQQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHhccCcchHHH
Confidence 357777888877 6899999999999999876 2 3488889988864 34 8889999997754432 456
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQA 237 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA 237 (408)
+...+|.+|.. ..|.++|+.-|++|
T Consensus 120 ~~~~~Gdi~~~----~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 120 AAELLGDIYLA----QGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHh
Confidence 77778999976 78999999999987
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.01 E-value=0.063 Score=58.80 Aligned_cols=97 Identities=5% Similarity=-0.100 Sum_probs=85.8
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID 208 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~ 208 (408)
-+++++++||.+.. ..+.+++|..|++.+.+. +|..|..+++.++..-. -+++|+.+++++... .++.
T Consensus 84 ~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-------~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 84 HTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-------GIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred ccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-------cHHHHHHHHHHHhhcCCCCHH
Confidence 46999999999988 678999999999999987 69999999999997522 688999999999887 6899
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+++.+|.++.. -..+++|...|+++...+
T Consensus 156 ~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 156 EILLEAKSWDE----IGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHHH----hcchHHHHHHHHHHHhcC
Confidence 99999999965 678999999999999755
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.98 E-value=0.086 Score=49.14 Aligned_cols=100 Identities=17% Similarity=0.061 Sum_probs=79.0
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA---QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G 205 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~---~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G 205 (408)
..+++.|.+|..|+ ..+++++|+..|+++.... ++ .+.+.+|.+|.. .| ++.+|+..|+++.+. +
T Consensus 31 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~------~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 31 WPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SG------DYAEAIAAADRFIRLHPN 102 (235)
T ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHHCcC
Confidence 46678899999988 6789999999999987753 33 688999999975 23 899999999999875 2
Q ss_pred CH---HHHHHHHHHHHcCCC----ccccHHHHHHHHHHHHHc
Q 015393 206 HI---DALRELGHCLQDGYG----VRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 206 ~~---~A~~~Lg~~y~~G~G----v~~d~~~A~~w~~kAA~~ 240 (408)
++ .+.+.+|.+|..-.+ ...+.++|+..|.++.+.
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 33 479999999976311 235788999999999874
No 84
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.89 E-value=0.14 Score=41.63 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcC--C---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--C---cHHHHHHHHHHHHcCCCCCC
Q 015393 117 NWSESAHRFLKLCADAG--N---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--S---HAQALYSLAVIQFNGSGGSK 186 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G--~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G---~~~A~~~Lg~~y~~G~Gv~~ 186 (408)
...++|+..|.++.+.. + +.+.+.+|.+|+ ..+++..|+.+|+++... + .+.+.+.+|.+|.. .|
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~--- 90 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LG--- 90 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hC---
Confidence 44678888888887643 2 579999999998 688999999999999875 2 36789999999974 34
Q ss_pred CccCHHHHHHHHHHHHhC
Q 015393 187 NDKDLRAGVALCARAAFL 204 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~ 204 (408)
+..+|..+|.++.+.
T Consensus 91 ---~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 91 ---DKEKAKATLQQVIKR 105 (119)
T ss_pred ---ChHHHHHHHHHHHHH
Confidence 788999999999876
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.85 E-value=0.23 Score=47.43 Aligned_cols=110 Identities=20% Similarity=0.128 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCHH--HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 121 SAHRFLKLCADAGNVE--ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 121 ~A~~~l~~aAe~G~~~--A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
....++.+.+..-..+ ....+|...+ -.+|+..|+..+++|+... +.++..-||.+|.+ .| +...|..
T Consensus 84 ~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~G------r~~~Ar~ 155 (257)
T COG5010 84 SSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LG------RFDEARR 155 (257)
T ss_pred chHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-cc------ChhHHHH
Confidence 3444444444333222 2222555555 5788899999999988774 78888889999865 45 7778888
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
-|.+|.+. +.+....+||+.|. +..|++.|..++..|...+.
T Consensus 156 ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 156 AYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence 88888875 78888899998884 47889999999999888765
No 86
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.75 E-value=0.12 Score=49.69 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393 190 DLRAGVALCARAAF--LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237 (408)
Q Consensus 190 d~~kA~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA 237 (408)
+.++|+.||+++.. .+++..+..+|.++.. ....++|..+++++
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred cccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence 34444444444444 2344444444444432 33444444444443
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.09 Score=51.86 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
+..+.|+++|+..+++ .|++|.--+|.-|++ .++++.|+.||++-...| +++-..|+|.+.+.+.- ++
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ-------~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-------ID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-------hh
Confidence 3467899999988765 578888778877774 678999999999999888 78888899998877643 34
Q ss_pred HHHHHHHHHHhC----C-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH--cCCHHHHhh
Q 015393 193 AGVALCARAAFL----G-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA--RELAAVLSS 248 (408)
Q Consensus 193 kA~~~~~kAA~~----G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~--~G~~~A~~~ 248 (408)
-++--|++|... | -.+-.|+||.+.- .-.|...|.+.|+.|.- ..|..|+.+
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV----~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAV----TIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEE----eccchHHHHHHHHHHhccCcchHHHHHh
Confidence 455666666442 1 2456777777662 24577777777777764 344555444
No 88
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.056 Score=55.56 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=60.0
Q ss_pred HhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH---HHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393 163 AISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID---ALRELGHCLQDGYGVRQNIAEGRRFLVQA 237 (408)
Q Consensus 163 A~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA 237 (408)
++-.+++++++||..|.. .| ++++|+.+|++|.+. ++.+ ++|++|.+|.. ..++++|+..|++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lG------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KG------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 556799999999999965 35 899999999999987 5564 49999999965 68999999999999
Q ss_pred HHcCCHH
Q 015393 238 NARELAA 244 (408)
Q Consensus 238 A~~G~~~ 244 (408)
.+.++..
T Consensus 139 Lelsn~~ 145 (453)
T PLN03098 139 LRDYNLK 145 (453)
T ss_pred HHhcchh
Confidence 9975443
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.25 E-value=0.36 Score=51.21 Aligned_cols=113 Identities=11% Similarity=-0.036 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHhHHHHhh--cc-----CCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHcCCCCC
Q 015393 119 SESAHRFLKLCAD--AGNVEACYTLGMIRFY--CL-----QNRGSGASLMAKAAI----SSHAQALYSLAVIQFNGSGGS 185 (408)
Q Consensus 119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~--~~-----~d~~~A~~~~~kAA~----~G~~~A~~~Lg~~y~~G~Gv~ 185 (408)
.++|..+|++|.+ .+++.|+-.|+..|.. .. .+..++.+..+++.. ...+.++..+|.++.. .|
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g-- 434 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG-- 434 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC--
Confidence 4589999998876 5788898888887762 11 223455666666433 2456778888888763 45
Q ss_pred CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 186 KNDKDLRAGVALCARAAFLG-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++++|...|++|.+.. +..++..+|.+|.. ..+.++|+.+|++|....-
T Consensus 435 ----~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 435 ----KTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence 8999999999999875 57788889999965 7899999999999987543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.13 E-value=0.25 Score=48.82 Aligned_cols=95 Identities=12% Similarity=-0.073 Sum_probs=74.5
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC----C-
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG----H- 206 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G----~- 206 (408)
+..+...+|.++. ..+++.+|...++++.+.. ++.+.+.||.+|.. .| ++++|..+|+++.... .
T Consensus 113 ~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g------~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 113 YWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QG------RFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------CHHHHHHHHHhhhhccCCCcch
Confidence 3456666777777 6789999999999998774 67788999999865 55 8899999999998752 1
Q ss_pred -HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 207 -IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 207 -~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
...++.+|.+|.. ..+.++|+.+|.++...
T Consensus 185 ~~~~~~~la~~~~~----~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 185 RGHNWWHLALFYLE----RGDYEAALAIYDTHIAP 215 (355)
T ss_pred hHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcc
Confidence 2345678888865 68999999999998543
No 91
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=95.01 E-value=0.054 Score=35.94 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchH
Q 015393 61 LPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLV 102 (408)
Q Consensus 61 lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~ 102 (408)
||+|++..|+..+ ++.|+.++..+|+.|+.......+
T Consensus 1 lP~~ll~~I~~~l-----~~~d~~~~~~vc~~~~~~~~~~~~ 37 (41)
T smart00256 1 LPDEILEEILSKL-----PPKDLLRLRKVSRRWRSLIDSHDF 37 (41)
T ss_pred CCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcChhh
Confidence 7999999999887 467999999999999998766544
No 92
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.01 E-value=0.87 Score=46.47 Aligned_cols=118 Identities=11% Similarity=0.072 Sum_probs=87.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-c-HHHHH-HHHHHHHcCCCCCCCc
Q 015393 113 IKANNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-H-AQALY-SLAVIQFNGSGGSKND 188 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~-~~A~~-~Lg~~y~~G~Gv~~~~ 188 (408)
+..++| ++|.+.+.++.+.. ++...|.++...-...++++.|.+||++|++.. + ..+.. ..+.++.. .|
T Consensus 95 ~~eGd~-~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g----- 167 (398)
T PRK10747 95 LAEGDY-QQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RN----- 167 (398)
T ss_pred HhCCCH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CC-----
Confidence 444555 58889998888865 556666665555357899999999999999852 2 22332 33666654 34
Q ss_pred cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++++|...+++..+. .++.+...++.+|.. .+|.+++...+.+....+.
T Consensus 168 -~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 168 -ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCC
Confidence 889999999999886 689999999999966 5789999988888776543
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.98 E-value=0.23 Score=36.88 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+.+++++.+.. +..+.+.+|.+|. ..+++++|+++|+++.... +..+.+.+|.+|.. .| +..+
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~ 86 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LG------KYEE 86 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HH------hHHH
Confidence 3567888888877654 5578999999998 5688999999999988754 55688899988864 23 7889
Q ss_pred HHHHHHHHHhC
Q 015393 194 GVALCARAAFL 204 (408)
Q Consensus 194 A~~~~~kAA~~ 204 (408)
|..++.++.+.
T Consensus 87 a~~~~~~~~~~ 97 (100)
T cd00189 87 ALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHcc
Confidence 99999887654
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.97 E-value=0.39 Score=46.41 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHc--CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCCCCCC
Q 015393 117 NWSESAHRFLKLCADA--GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFNGSGGSK 186 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~ 186 (408)
...++|+..|+..... .+ +.|.|.||.+|+ ..+++++|+.+|++.... -.++|++.||.+|.. .|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g--- 231 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG--- 231 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC---
Confidence 3456777778766653 33 579999999998 799999999999999854 368899999999964 34
Q ss_pred CccCHHHHHHHHHHHHhC
Q 015393 187 NDKDLRAGVALCARAAFL 204 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~ 204 (408)
+..+|...|++..+.
T Consensus 232 ---~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 ---DTAKAKAVYQQVIKK 246 (263)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 889999999988875
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.91 E-value=0.11 Score=52.55 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=76.4
Q ss_pred HHHHHcCCH----HHHHHhHHHHhhccCCHHHHHHHHHHH----HhcCc----HHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 127 KLCADAGNV----EACYTLGMIRFYCLQNRGSGASLMAKA----AISSH----AQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 127 ~~aAe~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kA----A~~G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
+.|-+-|+. .|.-+||..|. ..++++.|+++|+++ .+.|+ +..+|.||..|.-+. ++.+|
T Consensus 223 ~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~-------e~~kA 294 (639)
T KOG1130|consen 223 EIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK-------EVQKA 294 (639)
T ss_pred HHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH-------HHHHH
Confidence 345566665 46778999988 588999999999875 55664 567899999996543 78899
Q ss_pred HHHHHHHH----h----CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 195 VALCARAA----F----LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 195 ~~~~~kAA----~----~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+.|+.+-. + -|...|+|.||..|.. -.+..+|++|.+++..
T Consensus 295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHHHHH
Confidence 99988743 2 3788899999999955 3466778887777654
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.64 E-value=2.3 Score=42.23 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhHHHHhh------ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 120 ESAHRFLKLCADAGNVEACYTLGMIRFY------CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~------~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
++|+..-++-+..|.-.=.+.++.+|.. ...|.++|..|+.||.+. ..+.|-..||.++.. .| |+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g------~y 230 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-KG------DY 230 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-cc------ch
Confidence 5677666666667766666666666651 468899999999999766 488899999999963 56 89
Q ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 192 RAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 192 ~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++|++-++...+++. ++..-.|-.+|.. -.+.++++.|+.++.+.-
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcc
Confidence 999999999999864 4466677788865 567889999999998753
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.64 E-value=0.86 Score=51.05 Aligned_cols=115 Identities=5% Similarity=-0.072 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHh--HHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTL--GMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~L--G~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+++++.+..+....-.+ |.+|. ..+++.+|+++|+++.+. +++++++.|+..|... + ..+
T Consensus 82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-~------q~~ 153 (822)
T PRK14574 82 GRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA-G------RGG 153 (822)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-C------CHH
Confidence 4467999999999976555555555 66887 689999999999999887 4788888887777543 3 678
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+|++.++++....- ...+.++..|... + ..+..+|+..|+++.+..-
T Consensus 154 eAl~~l~~l~~~dp-~~~~~l~layL~~-~-~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 154 VVLKQATELAERDP-TVQNYMTLSYLNR-A-TDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHhcccCc-chHHHHHHHHHHH-h-cchHHHHHHHHHHHHHhCC
Confidence 99999999987622 2222355555442 3 3444459999999999743
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.58 E-value=0.29 Score=54.74 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
.++|+.+|+++.+. +++++.+.|+++|. ..+..++|++.++++... ++...+.++..|... +. . +..+|++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~-~~-~---~~~~AL~ 190 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAER-DPTVQNYMTLSYLNR-AT-D---RNYDALQ 190 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHH-hc-c---hHHHHHH
Confidence 34666666665543 45556655545544 345666666666665544 222332344444331 11 1 2333666
Q ss_pred HHHHHHhC--CCHHHHHHHHHHH
Q 015393 197 LCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 197 ~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
.|+++.+. ++.+..+.+...+
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l 213 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEIL 213 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Confidence 66666654 3344444443333
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.47 E-value=0.24 Score=54.16 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHHHHhcC---------cH------------HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh---
Q 015393 148 CLQNRGSGASLMAKAAISS---------HA------------QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF--- 203 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~G---------~~------------~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~--- 203 (408)
...|.+.|++||+|+-..- ++ +.+|...--|..-.| +++.|+.+|.+|-+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G------emdaAl~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG------EMDAALSFYSSAKDYFS 943 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc------chHHHHHHHHHhhhhhh
Confidence 4589999999999984221 22 234444445556566 78888888887733
Q ss_pred --------------------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393 204 --------------------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV 245 (408)
Q Consensus 204 --------------------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A 245 (408)
.|+--|+|.||.+|++ ..|+.+|+.+|.+|-.-.++.-
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnAIR 1001 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNAIR 1001 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999987 6789999999999986655443
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.46 E-value=0.92 Score=38.51 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCC-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--C---cHHHHHHHHHHHHcCCCCCC
Q 015393 117 NWSESAHRFLKLCADAGN-----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--S---HAQALYSLAVIQFNGSGGSK 186 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G---~~~A~~~Lg~~y~~G~Gv~~ 186 (408)
...++|+.+|+++.+.|- ..+...||..|. ..+.+++|+.+++++... + +....+.++..+.+ .|
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g--- 89 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG--- 89 (120)
T ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC---
Confidence 347899999999999873 347778888887 789999999999999876 2 55667777777654 34
Q ss_pred CccCHHHHHHHHHHHHh
Q 015393 187 NDKDLRAGVALCARAAF 203 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~ 203 (408)
..++|+.|+..+..
T Consensus 90 ---r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 ---RPKEALEWLLEALA 103 (120)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 67799999988765
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.44 E-value=0.36 Score=54.08 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=83.6
Q ss_pred hcCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhc-----------------cCCHHHHHHHHHH-HHhcC-cHHHHHH
Q 015393 115 ANNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYC-----------------LQNRGSGASLMAK-AAISS-HAQALYS 173 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~-----------------~~d~~~A~~~~~k-AA~~G-~~~A~~~ 173 (408)
..+..+++....+.+.+ .+.+.++|.+|.+|+.- ..+. .+++||.. -.+.+ +..|++.
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHH
Confidence 34456777777775544 46778999999988721 1122 44555443 23333 4469999
Q ss_pred HHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 174 LAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 174 Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
||.+|.. .| +.++++..|+++.+. .|+.++.+||..|.. . |+++|..++.+|...
T Consensus 122 LA~~Ydk-~g------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 122 LAEAYAK-LN------ENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHH-cC------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH
Confidence 9999964 34 677999999999987 689999999999976 3 999999999999875
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.42 E-value=0.99 Score=43.17 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=88.4
Q ss_pred hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
.......|+..+++++.. .|.++...||.+|. ..++.+.|..-|.+|.+. +.+....|||++|.- .| |
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~g------d 183 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RG------D 183 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cC------C
Confidence 344568899999999875 58899999999998 679999999999999876 689999999999853 34 8
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q 015393 191 LRAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLV 235 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~ 235 (408)
++.|..++..|...+ +...-.+|+... |--.|+.+|...-.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~----~~~g~~~~A~~i~~ 226 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVV----GLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHH----hhcCChHHHHhhcc
Confidence 999999999999875 567777888877 55667766655433
No 103
>PRK11906 transcriptional regulator; Provisional
Probab=94.37 E-value=0.31 Score=50.29 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=81.9
Q ss_pred HHHHhHHHHh--hccCCHHHHHHHHHHHH---hc--CcHHHHHHHHHHHHcC--CCCCCCccCHHHHHHHHHHHHhC--C
Q 015393 137 ACYTLGMIRF--YCLQNRGSGASLMAKAA---IS--SHAQALYSLAVIQFNG--SGGSKNDKDLRAGVALCARAAFL--G 205 (408)
Q Consensus 137 A~~~LG~~y~--~~~~d~~~A~~~~~kAA---~~--G~~~A~~~Lg~~y~~G--~Gv~~~~~d~~kA~~~~~kAA~~--G 205 (408)
..|..|...+ +.+.+.+.|+.+|.+|. +. +++.|+-.|+.+|..+ .|....+.+..+|.++-++|.+. +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 3377777665 35577889999999999 43 4788999999988655 22222345889999999999987 5
Q ss_pred CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHh
Q 015393 206 HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLS 247 (408)
Q Consensus 206 ~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~ 247 (408)
|+.|.+.+|.++ +...+...|..||++|.....-.|..
T Consensus 337 Da~a~~~~g~~~----~~~~~~~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 337 DGKILAIMGLIT----GLSGQAKVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred CHHHHHHHHHHH----HhhcchhhHHHHHHHHhhcCCccHHH
Confidence 888999999977 34667999999999999987655533
No 104
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.10 E-value=0.11 Score=35.64 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.5
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV 176 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~ 176 (408)
++.+.||..|. ..+++++|+++|+++.+. +++++.+.||.
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45556666665 456666666666666554 35666665553
No 105
>PRK15331 chaperone protein SicA; Provisional
Probab=94.02 E-value=0.48 Score=42.45 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE 212 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~ 212 (408)
+.|.+|.-++ ..+++++|...|+--+..+ +++=.+.||.++.. .+++++|+..|..|+.. .++...|.
T Consensus 39 ~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-------~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 39 GLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-------KKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcccCCCCccch
Confidence 3343443333 4566666666666655543 33334444445432 12666777777766654 56666777
Q ss_pred HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 213 LGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|.||.. -+|..+|+..|..|.++
T Consensus 111 agqC~l~----l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLL----MRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHH----hCCHHHHHHHHHHHHhC
Confidence 7777754 56667777777766664
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.98 E-value=1.3 Score=48.22 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAA--ISSHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA--~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
..|.+++...+..|... =.+..+|..|.++. +.+..++|.+.|.-|. +-+|+.++..||.+|..+ | .+ .+
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~-G-~~---~l 736 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL-G-SP---RL 736 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-C-Cc---ch
Confidence 34556666555545433 34567788888888 7899999999998865 457999999999999875 3 22 34
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 192 RAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 192 ~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
....-++.-|.+.+ +++|.|.||.++.. ..|..+|.+.|.-|.....
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKK----LGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccchHHHHHHHHHHHhhcc
Confidence 45555888998875 89999999999976 6788899999998887544
No 107
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.97 E-value=0.32 Score=47.99 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=120.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh-------hcc----hhHHHhh------
Q 015393 52 AGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS-------KAS----KKTFAIK------ 114 (408)
Q Consensus 52 ~~~~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~-------~a~----~~~~~~~------ 114 (408)
+|..-.++.-||.-+. .|..+..- +|..+-.-+..-+-|+.-|+....+. ... .+.+++.
T Consensus 41 ~GlNfLLs~Q~dKAvd-lF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 41 KGLNFLLSNQPDKAVD-LFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred hHHHHHhhcCcchHHH-HHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 4444456666665433 33334433 55555444444556666654432211 110 1112211
Q ss_pred -hcCCHHHHHHHHHHHHHcCC--HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 115 -ANNWSESAHRFLKLCADAGN--VEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 115 -~~~~~~~A~~~l~~aAe~G~--~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
.....+.|...|....+.|. ..|.-.|-.+|. ..++.++|++--++-...|.-.-...++.+|..=---.....|.
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 12336788888888888664 468888888888 78999999999998888876666666666662210000012388
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAA 244 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~ 244 (408)
.+|+.|+.||.+. ..+.|-..||.++.. ..|+++|++-|+...++....
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhChHH
Confidence 9999999999875 689999999999975 789999999999999987644
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.86 E-value=0.79 Score=50.51 Aligned_cols=114 Identities=18% Similarity=0.070 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
+..+.|...+...+.+ -++.|++.||.+|. ..+|.++++..+..||.. ++.+=+..|+.+... .| ++.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~------~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LG------NIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cc------cHH
Confidence 4567888888866654 58889999999998 677999999988888876 477777788877754 34 788
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 193 AGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 193 kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+|.-+|.+|.... +..-.++-+.+|+. ..+..+|..-|++....-.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCC
Confidence 9999999998874 55677777888865 5688899999999888766
No 109
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=0.64 Score=48.20 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=90.8
Q ss_pred hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccC
Q 015393 115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
..+..++...+|.+|.+. .|++-+|.-|+|++ ..+++++|+.=|++|.... |+-++.+|+...+.- + -
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~------k 443 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-H------K 443 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-H------H
Confidence 345567778888888765 48888999999888 7788899999999988775 666777777665432 1 4
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
+..++..|+.+-.. ..++.+...|.++.+ .++..+|.+.|.+|.+....
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhccc
Confidence 67888888888776 667778888888866 78999999999999987654
No 110
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=93.59 E-value=0.032 Score=38.79 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=32.5
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchH
Q 015393 57 LFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLV 102 (408)
Q Consensus 57 ~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~ 102 (408)
.|.+||+|++..|+..+ ++.|+..+..+|+.|+........
T Consensus 2 ~~~~LP~~il~~Il~~l-----~~~~~~~l~~vsk~~~~~~~~~~~ 42 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYL-----DPKDLLRLSLVSKRWRSLVDSPRL 42 (48)
T ss_dssp HHHHS-HHHHHHHHHTS------HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred CHHHCCHHHHHHHHHHC-----cHHHHHHHHHHhhHHHHHHcCCCc
Confidence 46789999999999988 567999999999999998766543
No 111
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.56 E-value=0.025 Score=58.51 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=34.2
Q ss_pred CCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhh
Q 015393 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380 (408)
Q Consensus 326 ~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~ 380 (408)
...-|. .|.+... ..| |-...|||.+||+.||+ .|+..|.....-
T Consensus 526 kKQWC~--nC~~EAi-----y~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~~ 570 (588)
T KOG3612|consen 526 KKQWCY--NCLDEAI-----YHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKTN 570 (588)
T ss_pred HHHHHH--hhhHHHH-----HHh--hccccccCcchhhccch-hHhhhhcccCCC
Confidence 456788 4554443 334 77899999999999999 699999976644
No 112
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=93.48 E-value=0.033 Score=55.31 Aligned_cols=48 Identities=42% Similarity=0.903 Sum_probs=40.0
Q ss_pred CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhh
Q 015393 325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAER 379 (408)
Q Consensus 325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~ 379 (408)
.+...|.-|+|. +. ..|+.|+..+|||+.+|..||+.+|+..|.....
T Consensus 134 ~~~~~~~~~~~~--a~-----~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~ 181 (362)
T KOG2061|consen 134 DGADLCGSCGCS--AP-----AACSPCKAAAYCSKKHQSLDWPKGHKDACAQPST 181 (362)
T ss_pred cccchhccCccc--Cc-----ccccccchhhhcCchhhcccccccccccccCccc
Confidence 345789977776 33 5699999999999999999999889999986553
No 113
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.44 E-value=1.6 Score=44.58 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhc--CcH--HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH--HHh-CCCHHHHHHHHHHHHcCCC
Q 015393 150 QNRGSGASLMAKAAIS--SHA--QALYSLAVIQFNGSGGSKNDKDLRAGVALCAR--AAF-LGHIDALRELGHCLQDGYG 222 (408)
Q Consensus 150 ~d~~~A~~~~~kAA~~--G~~--~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~k--AA~-~G~~~A~~~Lg~~y~~G~G 222 (408)
+|..++.+.++++.+. +++ .....||.++.. .| ++.+|.++|++ +.+ .-++.....||.++..
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~------~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~--- 382 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HG------EFIEAADAFKNVAACKEQLDANDLAMAADAFDQ--- 382 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cc------cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH---
Confidence 4555555555555544 445 444455655532 22 55566666663 322 2333344455665544
Q ss_pred ccccHHHHHHHHHHHH
Q 015393 223 VRQNIAEGRRFLVQAN 238 (408)
Q Consensus 223 v~~d~~~A~~w~~kAA 238 (408)
..+.++|.++|+++.
T Consensus 383 -~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 383 -AGDKAEAAAMRQDSL 397 (409)
T ss_pred -cCCHHHHHHHHHHHH
Confidence 455556666666543
No 114
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=0.43 Score=49.42 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=63.6
Q ss_pred ccCCHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 015393 148 CLQNRGSGASLMAKAAISSHA--------QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--HIDALRELGHCL 217 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~G~~--------~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y 217 (408)
.++++.+|++.|.+|.+.-.. .-+..-|.+..+= .+|+..|.++++||.+.. .-.|.-.||.+-
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW------KEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 358899999999999988644 2233334444331 239999999999999985 456888899888
Q ss_pred HcCCCccccHHHHHHHHHHHHHc
Q 015393 218 QDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 218 ~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+ ..++.+|+++|++++..
T Consensus 548 lQ----~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 548 LQ----RGKIDEAIELFEKSAQL 566 (606)
T ss_pred HH----HhhHHHHHHHHHHHHHH
Confidence 65 67999999999999974
No 115
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.30 E-value=1.3 Score=46.81 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHHHHHhh------cCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHHc-----C--C---HHHHHHhHHH
Q 015393 81 SDFVNVLITCKRMNGLA------LNSLVLSKASKKTFAIKANNWSESAHRFLKLCADA-----G--N---VEACYTLGMI 144 (408)
Q Consensus 81 ~d~~~a~l~ck~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe~-----G--~---~~A~~~LG~~ 144 (408)
.+|-.+...|++-.+.. .+..+-...-.-++......-.++|+.+|++|..- | | +..+.+|+.+
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~l 292 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVL 292 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 46666666666544431 22333222222223333344467788888877642 2 3 3477888988
Q ss_pred HhhccCCHHHHHHHHHHHHhc-------Cc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-------CCC-
Q 015393 145 RFYCLQNRGSGASLMAKAAIS-------SH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-------LGH- 206 (408)
Q Consensus 145 y~~~~~d~~~A~~~~~kAA~~-------G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-------~G~- 206 (408)
|. ..+.+.+|..++++|.+- .+ +..+-+++.++..-. .+++|..+|+++.. ..+
T Consensus 293 y~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-------~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 293 YY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-------EYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred Hh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHHHHHHHhhccccch
Confidence 86 788999999998888642 22 234456666664422 56677777777754 233
Q ss_pred --HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 207 --IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 207 --~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.-..+||.+|+. ...+.+|.++|++|...
T Consensus 365 ~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 365 NLAKIYANLAELYLK----MGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHH
Confidence 2345679999976 67889999999999964
No 116
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.27 E-value=0.88 Score=45.12 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcc
Q 015393 149 LQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--HIDALRELGHCLQDGYGVR 224 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~ 224 (408)
.++.+.|+++|+.++++. |++|.--+|.-|+.+. +++-|+.||++-...| +++-..+||.|.+.+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~-------~PE~AlryYRRiLqmG~~speLf~NigLCC~ya---- 371 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN-------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYA---- 371 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC-------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh----
Confidence 368889999999998774 7777777777776543 6789999999999987 688889999998874
Q ss_pred ccHHHHHHHHHHHHH
Q 015393 225 QNIAEGRRFLVQANA 239 (408)
Q Consensus 225 ~d~~~A~~w~~kAA~ 239 (408)
+.+..++--|++|..
T Consensus 372 qQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALS 386 (478)
T ss_pred cchhhhHHHHHHHHh
Confidence 344455556666543
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.59 Score=49.11 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
..+|.+||.||.-.. ...|+..+|..|. .++..++|+..|..|+.. |...-...||+=|.. .+ +++-|
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~------n~kLA 399 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TN------NLKLA 399 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hc------cHHHH
Confidence 457777777776544 5567777777766 677777888888888765 666667777777742 12 77788
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
-++|.+|..- .+|--..+||.++++ ...+.+|..||+.+.
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHH
Confidence 8888888654 677888888888865 577888899998887
No 118
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.24 E-value=3.9 Score=41.80 Aligned_cols=113 Identities=9% Similarity=-0.030 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCH--HHHHHhHHHHhhccCCHHHHHHHHHHHHhc-CcH--HHHHHHHHHHHcCCCCCCCccCH
Q 015393 117 NWSESAHRFLKLCADAGNV--EACYTLGMIRFYCLQNRGSGASLMAKAAIS-SHA--QALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~--~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-G~~--~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
...+.|.+.+.++++.... .+....|.++. ..+|++.|.+||+++.+. ++. .....++.++.. .| ++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~------~~ 169 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QN------EL 169 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CC------CH
Confidence 3457888888888886532 33444466655 679999999999999875 333 234445777754 33 78
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++|...+++..+. .++.+...++.+|.. .+|.+++...+.+..+.+
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcC
Confidence 8999999999887 688999999999976 789999999988888764
No 119
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.03 E-value=0.19 Score=31.65 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~ 165 (408)
+++++.||.+|+ ..+++++|+++|++|.+.
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Confidence 356777777777 577777777777777653
No 120
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.02 E-value=2.4 Score=44.89 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHHc-------CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----------CcHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA-------GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----------SHAQALYSLA 175 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~-------G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg 175 (408)
.+-.++|..+|+++-+. -| +.-..+||.+|+ -.+.+++|.++|++|... +......+||
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 34456777777665442 23 345567888888 678999999999999854 2355778889
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 176 VIQFNGSGGSKNDKDLRAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
..|..+.......+=+.++..|+ +++--++ ...+.+|+..|.. -.++++|+++..++..
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~----~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRA----QGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHH----cccHHHHHHHHHHHHH
Confidence 88877654222223455667777 6666555 4578899999965 5688999988887763
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.4 Score=50.33 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID 208 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~ 208 (408)
..+..+|.+|..|+ ..+..++|.+||.||.... +.+|+..+|..|. +.| .-++|+.-|..|+.. |...
T Consensus 310 ~~a~sW~aVg~YYl-~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~------EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 310 SKALSWFAVGCYYL-MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEG------EHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred CCCcchhhHHHHHH-HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcc------hHHHHHHHHHHHHHhccCCcc
Confidence 34456666777777 6689999999999998664 7889999999885 333 668999999999986 8888
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
-...||+-| +...|.+.|.++|.+|-..
T Consensus 382 P~LYlgmey----~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 382 PSLYLGMEY----MRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred hHHHHHHHH----HHhccHHHHHHHHHHHHhc
Confidence 899999999 4578999999999999864
No 122
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.88 E-value=0.71 Score=34.44 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=36.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC
Q 015393 142 GMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG 205 (408)
Q Consensus 142 G~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G 205 (408)
..+|+ ..+++++|+++++++... .++.+.+.+|.+|.. .| ++.+|++.|+++.+.+
T Consensus 2 ~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g------~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LG------RYEEALEDLERALELS 59 (73)
T ss_pred HHHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hc------cHHHHHHHHHHHHHHC
Confidence 34454 467777777777777665 366677777777754 23 6677777777777653
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.81 E-value=0.87 Score=49.98 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=47.9
Q ss_pred HHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHH----------hcCcHHHHHHHHHH-----------HHcCCCCCCC
Q 015393 129 CADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAA----------ISSHAQALYSLAVI-----------QFNGSGGSKN 187 (408)
Q Consensus 129 aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA----------~~G~~~A~~~Lg~~-----------y~~G~Gv~~~ 187 (408)
|-+.||..|+|.||.+|. ..++..+|+.+|.+|- +++.-+-+.+|+.+ |+...|+
T Consensus 961 A~esgd~AAcYhlaR~YE-n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--- 1036 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYE-NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--- 1036 (1416)
T ss_pred HHhcccHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---
Confidence 446799999999999998 6888999999999884 33444445555543 2233333
Q ss_pred ccCHHHHHHHHHHH
Q 015393 188 DKDLRAGVALCARA 201 (408)
Q Consensus 188 ~~d~~kA~~~~~kA 201 (408)
+..+|+.+|.||
T Consensus 1037 --~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1037 --YAHKAVMLYHKA 1048 (1416)
T ss_pred --hhhHHHHHHHhh
Confidence 667888888877
No 124
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.80 E-value=3.2 Score=42.12 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=83.4
Q ss_pred hhHHHhhh---cCCHHHHHHHHHHHH---HcCCHHHHHHhHHHHhh--------ccCCHHHHHHHHHHHHhcC-cHHHHH
Q 015393 108 KKTFAIKA---NNWSESAHRFLKLCA---DAGNVEACYTLGMIRFY--------CLQNRGSGASLMAKAAISS-HAQALY 172 (408)
Q Consensus 108 ~~~~~~~~---~~~~~~A~~~l~~aA---e~G~~~A~~~LG~~y~~--------~~~d~~~A~~~~~kAA~~G-~~~A~~ 172 (408)
..+|++.. ..+.++|+.++.... +.-+++.+..+|.+|-. ......+|++||.+|-+.. +...=.
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI 263 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI 263 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH
Confidence 45677776 667899999988733 34578999999999971 1245779999999998775 333444
Q ss_pred HHHHHH-HcCCCCCCCccCHHH-HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 173 SLAVIQ-FNGSGGSKNDKDLRA-GVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 173 ~Lg~~y-~~G~Gv~~~~~d~~k-A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
|++.++ ..|..... ...+.+ ++.+-....+.| ...-++.+|..+.-... ..|.++|..|++++....
T Consensus 264 N~AtLL~~~g~~~~~-~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 264 NAATLLMLAGHDFET-SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHcCCcccc-hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcC
Confidence 666655 34432211 111112 223323333444 34456666666655433 579999999999998763
No 125
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.77 E-value=3.6 Score=45.53 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=90.7
Q ss_pred HhHHHHHHHHHHHHHhh-cCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHH
Q 015393 81 SDFVNVLITCKRMNGLA-LNSLVLSKASKKTFAIKANNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGAS 157 (408)
Q Consensus 81 ~d~~~a~l~ck~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~ 157 (408)
.|+..+...|+..-... .....+.. ...+ .....+.+++..++-.||- .++.+-+..++.+.. ..+++.+|..
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~t--L~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYT--LGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHH--HHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHH
Confidence 46666666666543322 11111111 1111 1223356778777777765 468888888888766 5678999999
Q ss_pred HHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC-HHH------HHHHHHHHHcCCCccccHH
Q 015393 158 LMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH-IDA------LRELGHCLQDGYGVRQNIA 228 (408)
Q Consensus 158 ~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~-~~A------~~~Lg~~y~~G~Gv~~d~~ 228 (408)
+|.+|.... +.+-.|.-+.+|.. .| +..+|++-|.+....-. ++- .+..+..| -+..+.+
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~-~G------~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~----~~~~~~e 297 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQK-TG------DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF----ITHNERE 297 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHH-hC------hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH----HHhhHHH
Confidence 999998875 45566666777743 45 77789999999888744 222 22223333 2456667
Q ss_pred HHHHHHHHHHHcCC
Q 015393 229 EGRRFLVQANAREL 242 (408)
Q Consensus 229 ~A~~w~~kAA~~G~ 242 (408)
.|++.++.|...+.
T Consensus 298 ~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 298 RAAKALEGALSKEK 311 (895)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777777777544
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.68 E-value=0.38 Score=35.42 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 149 LQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
.+++++|+++|+++... ++.++.+.||.+|... | ++++|..++++....
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g------~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-G------QYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-------HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-C------CHHHHHHHHHHHHHH
Confidence 35556666666665544 3566666666666542 3 555666666665544
No 127
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.65 E-value=3.3 Score=42.23 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccc
Q 015393 150 QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG-HIDALRELGHCLQDGYGVRQN 226 (408)
Q Consensus 150 ~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d 226 (408)
++..+++..+++..+. +++...+.+|.++... + ++.+|.++|+++.+.. +...+..|+.++.. ..+
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~------~~~~A~~~le~al~~~P~~~~~~~La~~~~~----~g~ 376 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-G------EWQEASLAFRAALKQRPDAYDYAWLADALDR----LHK 376 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCC
Confidence 3444444444443333 2444444444444321 1 4445555555554442 22233444544433 334
Q ss_pred HHHHHHHHHHH
Q 015393 227 IAEGRRFLVQA 237 (408)
Q Consensus 227 ~~~A~~w~~kA 237 (408)
.++|..+|+++
T Consensus 377 ~~~A~~~~~~~ 387 (398)
T PRK10747 377 PEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 128
>PRK15331 chaperone protein SicA; Provisional
Probab=92.63 E-value=3.7 Score=36.79 Aligned_cols=80 Identities=11% Similarity=-0.001 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|..+|+-.+ +..|++=.+.||.+|. ..+++++|+..|..|+.. .+|...|.+|.+|+. .| +..+
T Consensus 52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~------~~~~ 123 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MR------KAAK 123 (165)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hC------CHHH
Confidence 3567777777554 4567776777777776 789999999999998865 689999999999974 34 8889
Q ss_pred HHHHHHHHHhCC
Q 015393 194 GVALCARAAFLG 205 (408)
Q Consensus 194 A~~~~~kAA~~G 205 (408)
|...|..+.+.-
T Consensus 124 A~~~f~~a~~~~ 135 (165)
T PRK15331 124 ARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHhCc
Confidence 999999998853
No 129
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=0.68 Score=43.86 Aligned_cols=99 Identities=21% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C---cHH-HHHHHHHHHHcCCCCCCCc
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S---HAQ-ALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G---~~~-A~~~Lg~~y~~G~Gv~~~~ 188 (408)
+-.++|..+|.+|+. +|.| .++...|=.-|.+||+. | +.. .+...+.+|..+
T Consensus 28 ~k~eeAadl~~~Aan------~ykl-------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~------- 87 (288)
T KOG1586|consen 28 NKYEEAAELYERAAN------MYKL-------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV------- 87 (288)
T ss_pred cchHHHHHHHHHHHH------HHHH-------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-------
Confidence 346778888887754 2222 34444444444444432 2 222 233444555432
Q ss_pred cCHHHHHHHHHHHHhC----CCHH--H--HHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 189 KDLRAGVALCARAAFL----GHID--A--LRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~----G~~~--A--~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
|+.+|+..+++|.+. |.-. | ...||.+|++ -.+|+++|+..|++|++
T Consensus 88 -~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 88 -DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAE 142 (288)
T ss_pred -ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHH
Confidence 777899999988773 4221 1 3467888865 23899999999999998
No 130
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.55 E-value=1.5 Score=42.26 Aligned_cols=98 Identities=20% Similarity=0.134 Sum_probs=77.8
Q ss_pred HHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-----CCH
Q 015393 138 CYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-----GHI 207 (408)
Q Consensus 138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-----G~~ 207 (408)
.|+.+.-++ -.+++..|..-|..=.... -+.|+|+||..|+. .| |+..|...|...+.. --+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg------~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QG------DYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cc------cchHHHHHHHHHHHhCCCCCCCh
Confidence 677776666 5677888888888877764 57899999999964 44 888999999999873 357
Q ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393 208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS 247 (408)
Q Consensus 208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~ 247 (408)
++++.||.+... .++.++|...|++...+ |...|..
T Consensus 216 dallKlg~~~~~----l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 216 DALLKLGVSLGR----LGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 899999999954 88999999999999876 4444433
No 131
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.51 E-value=0.28 Score=33.51 Aligned_cols=41 Identities=27% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGH 215 (408)
Q Consensus 168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~ 215 (408)
|++++.||..|.. .| ++++|.++|+++.+. +++.+.+.||.
T Consensus 1 p~~~~~la~~~~~-~G------~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR-LG------QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999965 55 899999999999987 78999998885
No 132
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.18 E-value=0.29 Score=31.06 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~ 165 (408)
+.+++++|.+|+ ..+++++|+..|++|.+.
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHH
Confidence 356778888877 677888888888887654
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.66 E-value=11 Score=39.18 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=82.8
Q ss_pred HHHHHHHHH--HHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLK--LCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~--~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|...|. .+...+|+..+-..+.+++ ..+..++|.+.+++|..+ +.+--.+++|..|..+. ++.+|
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-------~~~ea 393 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG-------KPQEA 393 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-------ChHHH
Confidence 345555555 4566799999999999999 688899999999999877 35778899999998763 45588
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHc-CC------------CccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQD-GY------------GVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~------------Gv~~d~~~A~~w~~kAA~~ 240 (408)
+..+...... .++..+..|+..|.. |. -...++++|+.++..|-++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8888887654 577788888887743 11 1244555666666665554
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.62 E-value=1.6 Score=37.68 Aligned_cols=77 Identities=17% Similarity=0.071 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHcC-C----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccC
Q 015393 117 NWSESAHRFLKLCADAG-N----VEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G-~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
...++|...|+.+.+.. + +.+.+.|+.+++ ..+++++|+..++...... .+.+...+|.+|.. .| +
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~-~g------~ 133 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQIPDEAFKALAAELLGDIYLA-QG------D 133 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHH-CC------C
Confidence 45688999999888876 3 347888888888 7899999999997743332 45677889999965 45 8
Q ss_pred HHHHHHHHHHH
Q 015393 191 LRAGVALCARA 201 (408)
Q Consensus 191 ~~kA~~~~~kA 201 (408)
.++|+..|++|
T Consensus 134 ~~~A~~~y~~A 144 (145)
T PF09976_consen 134 YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHh
Confidence 89999999987
No 135
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.49 E-value=4.9 Score=39.52 Aligned_cols=114 Identities=18% Similarity=0.033 Sum_probs=76.8
Q ss_pred hhcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHh--h-ccCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHcCCCCC
Q 015393 114 KANNWSESAHRFLKLCADA--GNVEACYTLGMIRF--Y-CLQNRGSGASLMAKAAIS---SHAQALYSLAVIQFNGSGGS 185 (408)
Q Consensus 114 ~~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~--~-~~~d~~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~ 185 (408)
......++|..+++++.+. .+..+... +..++ + ..+....+.+.+.. ... ++..+...+|.++.. .|
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~-~G-- 128 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE-AG-- 128 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH-cC--
Confidence 3445577889999887765 45555543 33333 1 12333344444433 222 234566677777753 45
Q ss_pred CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 186 KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++.+|...|+++.+. .++.+.+.||.+|.. ..+.++|+.+|.++.+.
T Consensus 129 ----~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 129 ----QYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDT 177 (355)
T ss_pred ----CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhc
Confidence 889999999999986 567889999999976 67899999999998875
No 136
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.46 E-value=3.3 Score=36.02 Aligned_cols=93 Identities=16% Similarity=-0.010 Sum_probs=59.2
Q ss_pred hhhcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc------HHHHHHHHHHHHcCCCC
Q 015393 113 IKANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH------AQALYSLAVIQFNGSGG 184 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~------~~A~~~Lg~~y~~G~Gv 184 (408)
+.....-+.|++.|.++... ..+.|+.|-+..|. .+++.++|++=+.+|.+.-. -.|...-|.+|.- .|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g- 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LG- 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hC-
Confidence 33344456677777776654 36677777777766 56777777777777776532 2355556666643 33
Q ss_pred CCCccCHHHHHHHHHHHHhCCCHHHHHHH
Q 015393 185 SKNDKDLRAGVALCARAAFLGHIDALREL 213 (408)
Q Consensus 185 ~~~~~d~~kA~~~~~kAA~~G~~~A~~~L 213 (408)
|.++|..-|+.||+.|.+-|-..|
T Consensus 130 -----~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 130 -----NDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred -----chHHHHHhHHHHHHhCCHHHHHHH
Confidence 556777777777777777665554
No 137
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.43 E-value=0.33 Score=31.70 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=18.1
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHH
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAA 163 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA 163 (408)
|+.+||.+|. ..+++++|+++|++|.
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 4567777777 5777888888887754
No 138
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.26 E-value=0.25 Score=48.42 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=44.0
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhc
Q 015393 57 LFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKA 106 (408)
Q Consensus 57 ~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a 106 (408)
.|..||||+|..||..+-++.-+..++.++.++|+.|..+.-++.++..+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 47889999999999999987778899999999999999999888776544
No 139
>PLN02789 farnesyltranstransferase
Probab=90.97 E-value=6.4 Score=39.13 Aligned_cols=113 Identities=10% Similarity=-0.059 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+.++.++.+. .+..+.+..|.++.....++++++.++.+++.. .+..+.+..+.++.. .|. . ...+
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~-~---~~~~ 126 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGP-D---AANK 126 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCc-h---hhHH
Confidence 345566666655543 355666666666553223566677777766654 355566666655532 110 0 1245
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
++.++.++.+. .+..|.+..+.++.. -.+.++++.++.++.+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence 56666666654 456666666666654 2346666777766665
No 140
>PLN02789 farnesyltranstransferase
Probab=90.82 E-value=4.6 Score=40.18 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC---CCCCCCccCHHH
Q 015393 121 SAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG---SGGSKNDKDLRA 193 (408)
Q Consensus 121 ~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G---~Gv~~~~~d~~k 193 (408)
+++.++.++.+. .|..|.+..|.++. ..++++++++++.++.+. .+..|.++.+.++... .+. ....+.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~---~~~~e~ 201 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL---EAMRDS 201 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc---cccHHH
Confidence 445555444432 35556666665554 334566666666666553 3556666666555432 111 113345
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHc-CCCccccHHHHHHHHHHHHH
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQD-GYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.+.+..++... .+..|.+.++.+|.. +.+. ....++...+.++..
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l-~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEAL-VSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc-ccchhHHHHHHHhhc
Confidence 56666666544 455566666666644 1222 122335555555444
No 141
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.45 Score=46.72 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh
Q 015393 58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS 104 (408)
Q Consensus 58 f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~ 104 (408)
|++|||+++.-||+.+.- .++..++.+|++|+..+.+...+.
T Consensus 98 ~~slpDEill~IFs~L~k-----k~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCK-----KELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred cccCCHHHHHHHHHhccH-----HHHHHHHHHHHHHhhcccccccee
Confidence 999999999999999865 599999999999999987765543
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=89.81 E-value=6.9 Score=40.14 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
-.+.|+.+|++..+. +|++.+.|+.+|. ...+..+|++++.++.... +.+.+...+..+... + +++.|+
T Consensus 184 ~~~~ai~lle~L~~~-~pev~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~------~~~lAL 254 (395)
T PF09295_consen 184 RYDEAIELLEKLRER-DPEVAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-K------KYELAL 254 (395)
T ss_pred cHHHHHHHHHHHHhc-CCcHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C------CHHHHH
Confidence 357899999876654 5889999999998 4567789999999999754 566666666666542 2 678999
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHH
Q 015393 196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFL 234 (408)
Q Consensus 196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~ 234 (408)
...++|.+. .+....+.|+.+|.. ..|++.|+.-+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaL 291 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLAL 291 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHH
Confidence 999999987 678899999999965 66777775433
No 143
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.52 E-value=5.2 Score=34.79 Aligned_cols=91 Identities=15% Similarity=-0.023 Sum_probs=73.4
Q ss_pred ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHc
Q 015393 148 CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH------IDALRELGHCLQD 219 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~------~~A~~~Lg~~y~~ 219 (408)
..++.+.|++.|.+|... ..+.|+.|-+..|.- .| +.++|++-+.+|.+.-. -.|...-|.+|.-
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~------~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QG------DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cC------ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 458899999999999876 478888888888853 23 77899999999988622 2366777888854
Q ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 220 GYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 220 G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
..|.+.|+.=|+.||..|+..|...+
T Consensus 128 ----~g~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 128 ----LGNDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred ----hCchHHHHHhHHHHHHhCCHHHHHHH
Confidence 67889999999999999999998874
No 144
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.31 E-value=2.3 Score=43.44 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=56.0
Q ss_pred HHHHHHHH----HHHHcCCH----HHHHHhHHHHhhccCCHHHHHHHHHH--HH--h----cCcHHHHHHHHHHHHcCCC
Q 015393 120 ESAHRFLK----LCADAGNV----EACYTLGMIRFYCLQNRGSGASLMAK--AA--I----SSHAQALYSLAVIQFNGSG 183 (408)
Q Consensus 120 ~~A~~~l~----~aAe~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~k--AA--~----~G~~~A~~~Lg~~y~~G~G 183 (408)
+-|+++|+ .|.+.|+. ..+|.||..|. ..+++.+|+.|+.+ |+ + -|...|+|.||..|-. .|
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a-lg 329 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA-LG 329 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-hh
Confidence 34555554 56788864 57899999987 67899999999876 22 2 2678899999999943 55
Q ss_pred CCCCccCHHHHHHHHHHHHh
Q 015393 184 GSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 184 v~~~~~d~~kA~~~~~kAA~ 203 (408)
+..+|+.+.+++.+
T Consensus 330 ------~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 ------EHRKALYFAELHLR 343 (639)
T ss_pred ------hHHHHHHHHHHHHH
Confidence 56688887777654
No 145
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=2.9 Score=42.42 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
..+..||+.+|.... ++.+|+++..++.+. +|+.|+|.=|.+|.. -.+++.|+..|++|.+.
T Consensus 257 ~~~~lNlA~c~lKl~-------~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLK-------EYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhh-------hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHh
Confidence 346779999996532 778999999999875 799999999999976 56899999999999875
No 146
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.28 E-value=0.86 Score=28.54 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 207 IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 207 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+.+.||.+|+. .++.++|+++|++|.+.
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 3567788888876 77888888888888763
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.23 E-value=1.5 Score=32.20 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc--HHHHHHHH
Q 015393 118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--AQALYSLA 175 (408)
Q Consensus 118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--~~A~~~Lg 175 (408)
..++|+.+|+++.+ .+++++.+.|+.+|+ ..+++++|..++++...... +..+.-++
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 35789999998765 579999999999999 68999999999999877642 44444444
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.01 E-value=8.6 Score=36.58 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=68.2
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--- 204 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--- 204 (408)
..+...|..|..++ ..+|+++|++.|++.... +. ..|+++||..|.. .+ |+.+|+.+|++..+.
T Consensus 30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~------~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NA------DLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHhCcC
Confidence 35566677777776 578999999999987765 22 3356889998875 23 888999999999885
Q ss_pred --CCHHHHHHHHHHHHc-CC----------CccccHH---HHHHHHHHHHHc
Q 015393 205 --GHIDALRELGHCLQD-GY----------GVRQNIA---EGRRFLVQANAR 240 (408)
Q Consensus 205 --G~~~A~~~Lg~~y~~-G~----------Gv~~d~~---~A~~w~~kAA~~ 240 (408)
..+.|+|.+|.++.. +. ...+|.. +|+.-|+.-.++
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 346688999987421 11 1334444 455666666654
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=88.83 E-value=3.6 Score=43.74 Aligned_cols=66 Identities=14% Similarity=-0.052 Sum_probs=55.7
Q ss_pred cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC
Q 015393 132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG 205 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G 205 (408)
..++.++..+|.++. ..+++++|...|++|.+.. +..+++.+|.+|.. .| +.++|+++|++|....
T Consensus 417 ~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~-~G------~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 417 NVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL-KG------DNRLAADAYSTAFNLR 483 (517)
T ss_pred cCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcC
Confidence 346688888998888 6899999999999999876 57788888988864 45 8899999999999874
No 150
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.69 E-value=0.87 Score=28.65 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=19.8
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAI 164 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~ 164 (408)
++++.+|.+|. ..+|+++|+++|+++.+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 45677777777 46777777777777654
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.50 E-value=4.3 Score=37.33 Aligned_cols=100 Identities=20% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--- 204 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--- 204 (408)
..+++.|..|..++ ..+|+.+|+..|++....- -+.|++.||..|... | |+.+|+..|++-...
T Consensus 3 ~~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~------~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 3 DTAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-G------DYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp --HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-------HHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-C------CHHHHHHHHHHHHHHCCC
Confidence 35778899998888 7899999999999988752 467999999999763 3 889999999998764
Q ss_pred --CCHHHHHHHHHHHHcC-CCc---ccc---HHHHHHHHHHHHHc
Q 015393 205 --GHIDALRELGHCLQDG-YGV---RQN---IAEGRRFLVQANAR 240 (408)
Q Consensus 205 --G~~~A~~~Lg~~y~~G-~Gv---~~d---~~~A~~w~~kAA~~ 240 (408)
--+.|+|.+|.++..- .++ .+| ..+|+..|+.-.++
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 2356999999987543 233 333 34677777766653
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.09 E-value=6.2 Score=44.56 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=58.3
Q ss_pred HHHHHHH-HHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 121 SAHRFLK-LCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 121 ~A~~~l~-~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
.++.++. .-.+.+ +..|.+.||.+|. ..++.++++..|+++.+. .++.++.++|..|.. . |+++|.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------~-dL~KA~~ 170 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------E-DKEKAIT 170 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------h-hHHHHHH
Confidence 4444444 334444 5569999999998 678899999999999877 489999999999964 2 8899999
Q ss_pred HHHHHHh
Q 015393 197 LCARAAF 203 (408)
Q Consensus 197 ~~~kAA~ 203 (408)
++.+|..
T Consensus 171 m~~KAV~ 177 (906)
T PRK14720 171 YLKKAIY 177 (906)
T ss_pred HHHHHHH
Confidence 9999976
No 153
>PLN03218 maturation of RBCL 1; Provisional
Probab=87.99 E-value=13 Score=43.00 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccC
Q 015393 117 NWSESAHRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
...++|..+|....+.| +...+..|...|. ..++.++|.++|++--+.| +...+..|-..|.. .| +
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-~G------~ 734 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-GN------Q 734 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CC------C
Confidence 34566777777666666 4555666666655 4577777777777665544 34444444444432 23 6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 191 LRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+++|+++|.+-.+.|...-...+..++ .+..-..++++|..+|.+..+.|.
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILL-VASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCC
Confidence 778888888776666432222222222 233446677788888888777665
No 154
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.88 E-value=0.51 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=14.0
Q ss_pred cCCHHHHHHhHHHHhhccCCHHHHH
Q 015393 132 AGNVEACYTLGMIRFYCLQNRGSGA 156 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~~~~d~~~A~ 156 (408)
..|++++++||.+|. ..+++++|+
T Consensus 10 P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 346666666666665 445555553
No 155
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.57 E-value=4.4 Score=42.86 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=73.1
Q ss_pred HHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 015393 139 YTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELG 214 (408)
Q Consensus 139 ~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg 214 (408)
|..|+.++ -.+++.+|+=.|+.|+.+. |++|+-.||+....- + +...|+.-++++.++ ++.+|+..||
T Consensus 289 f~eG~~lm-~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E------~E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 289 FKEGCNLM-KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-E------NEQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHHHHHHH-hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-c------chHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34455555 4578999999999999884 999999999998642 2 455899999999887 7999999999
Q ss_pred HHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393 215 HCLQDGYGVRQNIAEGRRFLVQANARELAAV 245 (408)
Q Consensus 215 ~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A 245 (408)
+.|-+ +..-.+|++++.+=+....+..
T Consensus 361 VSytN----eg~q~~Al~~L~~Wi~~~p~y~ 387 (579)
T KOG1125|consen 361 VSYTN----EGLQNQALKMLDKWIRNKPKYV 387 (579)
T ss_pred HHHhh----hhhHHHHHHHHHHHHHhCccch
Confidence 99976 5556677777776665554433
No 156
>PLN03158 methionine aminopeptidase; Provisional
Probab=87.26 E-value=0.48 Score=48.50 Aligned_cols=43 Identities=26% Similarity=0.713 Sum_probs=34.8
Q ss_pred CCCCCcCcCCCCCCCccccccccCCccCCc-------cccCChhHHHhhchhhhhhhc
Q 015393 324 GPGLRLCSHVGCGRPETRRHEFRRCSVCGA-------VNYCSRACQALDWKLRHKADC 374 (408)
Q Consensus 324 ~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~-------~~YCs~~cQ~~dW~~~Hk~~C 374 (408)
.+..+.|. +|++..+ ..|-.|.. .++||.+|=+..|+ .||..=
T Consensus 6 ~~~~~~c~--~c~~~a~-----l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 55 (396)
T PLN03158 6 TTSPLACA--RCSKPAH-----LQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH 55 (396)
T ss_pred CCCccccc--CCCCccc-----ccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence 45667899 8998765 88888853 78999999999999 488753
No 157
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.92 E-value=9.1 Score=36.93 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=53.5
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
-+.|+|.||..++ ..+|++.|.+.|...+.. --|++++.||++... .| +.++|...|++....
T Consensus 177 ~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~------~~d~A~atl~qv~k~ 244 (262)
T COG1729 177 TPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LG------NTDEACATLQQVIKR 244 (262)
T ss_pred cchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHH
Confidence 4679999999998 899999999999998865 257999999999853 34 778999999988775
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=3.7 Score=39.47 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=32.9
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
+|.+|+..|+.+|+ ..+++++|..+|+.-.-.. ++.-.-.||.+++.-.|+ . |+.-|.+||.+|.+.
T Consensus 152 ~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~-e---N~~~arkyy~~alkl 220 (289)
T KOG3060|consen 152 NDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA-E---NLELARKYYERALKL 220 (289)
T ss_pred CcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-H---HHHHHHHHHHHHHHh
Confidence 55555555665555 4555555555555543332 222223445444332221 1 455555555555554
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.37 E-value=8.8 Score=39.06 Aligned_cols=77 Identities=17% Similarity=0.073 Sum_probs=64.5
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
..+..||+++|+ -.+.+.+|+.+..++.+. +|+.|+|.=|..|... | ++..|...|++|.+. .|-.+.
T Consensus 257 ~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~------e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 257 LACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-G------EYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-c------cHHHHHHHHHHHHHhCCCcHHHH
Confidence 346778888887 567888999999998765 6999999999999753 4 899999999999986 688888
Q ss_pred HHHHHHHHc
Q 015393 211 RELGHCLQD 219 (408)
Q Consensus 211 ~~Lg~~y~~ 219 (408)
.+|..|-..
T Consensus 329 ~el~~l~~k 337 (397)
T KOG0543|consen 329 AELIKLKQK 337 (397)
T ss_pred HHHHHHHHH
Confidence 888888754
No 160
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=86.25 E-value=0.58 Score=34.01 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=29.6
Q ss_pred cCCccCCccccCChhHHHhhchhhhhhhchhhhh
Q 015393 346 RRCSVCGAVNYCSRACQALDWKLRHKADCAPAER 379 (408)
Q Consensus 346 ~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~ 379 (408)
.-|..|+...|||+++=..|-. .|+..|..++.
T Consensus 15 ~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRq 47 (55)
T PF13824_consen 15 FECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQ 47 (55)
T ss_pred CcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHH
Confidence 5699999999999999888888 59999998886
No 161
>PLN03218 maturation of RBCL 1; Provisional
Probab=86.03 E-value=63 Score=37.57 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccC
Q 015393 117 NWSESAHRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
...++|..+|....+.| |...+..|-..|. ..++.++|+++|....+.| +...+..|..+|.. .| +
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~-k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k-~G------~ 699 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG-HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN-AK------N 699 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CC------C
Confidence 34577777777777666 4344444444444 4678888888888888777 45566666666643 33 7
Q ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 191 LRAGVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+++|.++|++--+.| +...+..|-..| .-..++++|.++|.+..+.|.
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy----~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITAL----CEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCC
Confidence 788888888776554 444555555555 336788888888888777664
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.71 E-value=4.4 Score=39.67 Aligned_cols=78 Identities=12% Similarity=-0.019 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+..|.+|.+.. |+.=+.+-+..|. ..+.++.|++=.+.|.... +..|+-.||+.|.. .| ++++|
T Consensus 97 Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~g------k~~~A 168 (304)
T KOG0553|consen 97 YQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LG------KYEEA 168 (304)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cC------cHHHH
Confidence 455666666665554 3333334444444 3455556666666555543 45556666666643 23 45566
Q ss_pred HHHHHHHHhC
Q 015393 195 VALCARAAFL 204 (408)
Q Consensus 195 ~~~~~kAA~~ 204 (408)
++.|+||.+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 6666666554
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.78 E-value=5.7 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS 166 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G 166 (408)
+..++|+.+++++... .++.+.+.+|.+|+ ..+++.+|++.|+++.+.+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELS 59 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHC
Confidence 3457888888877765 58899999999998 6899999999999998775
No 164
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.62 E-value=1.9 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
|+.+||.+|.. ..|.++|+.+|++|.
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 46788888876 778888888888855
No 165
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.34 E-value=4.6 Score=44.14 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=60.5
Q ss_pred HHHHHHHH--HHHHcCCHHHHHHhHHHHhhccCCHHHHHH--HHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 120 ESAHRFLK--LCADAGNVEACYTLGMIRFYCLQNRGSGAS--LMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 120 ~~A~~~l~--~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~--~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
++|..-|. .+.+.+|+.++..||.+|. ..++...+.. .+.-|.+.+ +++|+|.||.++.. .| |.++
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~G------d~~~ 772 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LG------DSKQ 772 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc------chHH
Confidence 34444444 5678899999999999999 3445554544 899999887 89999999999964 56 8889
Q ss_pred HHHHHHHHHhC
Q 015393 194 GVALCARAAFL 204 (408)
Q Consensus 194 A~~~~~kAA~~ 204 (408)
|.+.|.-|.+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.19 E-value=1 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHH
Q 015393 198 CARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGR 231 (408)
Q Consensus 198 ~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~ 231 (408)
|+||.+. .++.+.++||.+|.. ..|.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 5666665 577777777777764 34555543
No 167
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.07 E-value=2.1 Score=27.90 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=18.3
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAI 164 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~ 164 (408)
.++.+||.+|. ..+++++|..+++++.+
T Consensus 3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYR-AQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHH-HCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhcchhhHHHHHHHH
Confidence 45667777776 45777777777777653
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=84.01 E-value=5.8 Score=44.68 Aligned_cols=82 Identities=21% Similarity=0.063 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.+++++-.+++.+ ..|..|++.||..+...++|.++|.+.|..||+.. +.-|.-.|+.+|..- . +.-++.++
T Consensus 18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~-~---dIl~ld~~ 93 (1238)
T KOG1127|consen 18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY-N---DILDLDRA 93 (1238)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc-c---hhhhhhHh
Confidence 4677777777765 56999999999999988899999999999999884 777889999999772 2 12278899
Q ss_pred HHHHHHHHhC
Q 015393 195 VALCARAAFL 204 (408)
Q Consensus 195 ~~~~~kAA~~ 204 (408)
...|.+++..
T Consensus 94 ~~~yq~~~l~ 103 (1238)
T KOG1127|consen 94 AKCYQRAVLI 103 (1238)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 169
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.81 E-value=2.6 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 207 IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 207 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+++++|.+|.. .+++++|+..|++|.+.
T Consensus 1 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ----LGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCchHHHHHHHHHHHH
Confidence 3567778888865 67788888888877653
No 170
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.71 E-value=1.4 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=16.5
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAI 164 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~ 164 (408)
+|+|.+|.+|. ..++.++|+.+|++..+
T Consensus 1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYY-KLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HccCHHHHHHHHHHHHH
Confidence 35666666666 35566666666665443
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.62 E-value=7.2 Score=38.22 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHHHHhcCcHHHH--HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCc
Q 015393 148 CLQNRGSGASLMAKAAISSHAQAL--YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGV 223 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~G~~~A~--~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 223 (408)
-.++|.+|+..|.+|.+..-..|. .+=+-.|.. .| .++.|++=++.|... .+..|+-.||+.|...-
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g-- 163 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LG------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG-- 163 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hc------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC--
Confidence 468899999999999998744433 344555532 34 677899999999877 57999999999997654
Q ss_pred cccHHHHHHHHHHHHHcCC
Q 015393 224 RQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 224 ~~d~~~A~~w~~kAA~~G~ 242 (408)
++++|++.|+||.+..-
T Consensus 164 --k~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 164 --KYEEAIEAYKKALELDP 180 (304)
T ss_pred --cHHHHHHHHHhhhccCC
Confidence 57889999999998643
No 172
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=83.35 E-value=6.3 Score=42.92 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALR 211 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~ 211 (408)
.|++.+|...+ ..+|++++.+.|+.+.+. +....+|.+|.++..= + +...|++.|.+.... ++.+|..
T Consensus 486 rA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-e------k~q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 486 RAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-E------KEQAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred HHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-h------hhHHHHHHHHHHhhcCCCchhhhh
Confidence 35555555444 468888999999888766 4677777777777542 2 677899999988765 8899999
Q ss_pred HHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 212 ELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 212 ~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|+..|.. -++..+|..-+.+|..-.
T Consensus 558 Nls~ayi~----~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 558 NLSTAYIR----LKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhHHHHH----HhhhHHHHHHHHHHhhcC
Confidence 99999954 678888999999988654
No 173
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.51 E-value=10 Score=35.47 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCc--------HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393 153 GSGASLMAKAAISSH--------AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH 206 (408)
Q Consensus 153 ~~A~~~~~kAA~~G~--------~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~ 206 (408)
.+|+++|++|-+..+ ...+|.+|.++.. .| +.++|.+||.+....+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg------~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LG------NYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHcCCC
Confidence 367777777775542 3566777777654 45 78899999999887654
No 174
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.53 E-value=10 Score=35.22 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=65.3
Q ss_pred HHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 128 LCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 128 ~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
.-....+|...|. .-...+-..|+.-|.++...+ .++-++.||.+|.. . |..|++.+|.++.+.
T Consensus 103 ~tk~S~dP~llYy-----~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-----r---D~~Kt~~ll~~~L~l 169 (203)
T PF11207_consen 103 ETKNSQDPYLLYY-----HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTK-----R---DPEKTIQLLLRALEL 169 (203)
T ss_pred HHccCCCccHHHH-----HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-----c---CHHHHHHHHHHHHHh
Confidence 3344456654332 224445577888887776665 89999999999953 2 889999999999875
Q ss_pred ---C---CHHHHHHHHHHHHcCCCccccHHHHHHHH
Q 015393 205 ---G---HIDALRELGHCLQDGYGVRQNIAEGRRFL 234 (408)
Q Consensus 205 ---G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~ 234 (408)
+ +++-...|+.+|+. .++.++|.-|-
T Consensus 170 ~~~~~~~n~eil~sLas~~~~----~~~~e~AYiwa 201 (203)
T PF11207_consen 170 SNPDDNFNPEILKSLASIYQK----LKNYEQAYIWA 201 (203)
T ss_pred cCCCCCCCHHHHHHHHHHHHH----hcchhhhhhhe
Confidence 3 57788889999976 77888887774
No 175
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.03 E-value=6.4 Score=36.82 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH--------IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 171 ~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~--------~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+..||.+|.....-.....=+.+|+++|.+|-+..+ ...+|.+|.++.. -.|.++|.+||.+....+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCC
Confidence 345666664322100001124567777777776432 3466777777765 5788999999999988665
Q ss_pred HH
Q 015393 243 AA 244 (408)
Q Consensus 243 ~~ 244 (408)
..
T Consensus 197 ~s 198 (214)
T PF09986_consen 197 AS 198 (214)
T ss_pred CC
Confidence 43
No 176
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=80.16 E-value=6.1 Score=40.16 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=58.3
Q ss_pred cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHcCC--CCCCCccCHHHHHHHHHHHHhC-C
Q 015393 132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAI---SSHAQALYSLAVIQFNGS--GGSKNDKDLRAGVALCARAAFL-G 205 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~---~G~~~A~~~Lg~~y~~G~--Gv~~~~~d~~kA~~~~~kAA~~-G 205 (408)
..+..-+|.+++....-++|.++|+.++..+.. .-+++.+-.+|.+|.+-. ....+...+.+|+.||+++-+. .
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 344445555555544457999999999998443 347889999999995431 1112344689999999999885 4
Q ss_pred CHHHHHHHHHHHH
Q 015393 206 HIDALRELGHCLQ 218 (408)
Q Consensus 206 ~~~A~~~Lg~~y~ 218 (408)
+..+-.|++.++.
T Consensus 258 ~~Y~GIN~AtLL~ 270 (374)
T PF13281_consen 258 DYYSGINAATLLM 270 (374)
T ss_pred cccchHHHHHHHH
Confidence 4445555555553
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.52 E-value=3.1 Score=37.85 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=6.5
Q ss_pred CCHHHHHHhHHHHh
Q 015393 133 GNVEACYTLGMIRF 146 (408)
Q Consensus 133 G~~~A~~~LG~~y~ 146 (408)
-|+++.++=|..++
T Consensus 23 ~DadnL~~WG~ALL 36 (186)
T PF06552_consen 23 LDADNLTNWGGALL 36 (186)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 34555555555444
No 178
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.26 E-value=4.6 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh
Q 015393 169 QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 169 ~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~ 203 (408)
++++.+|.+|.. .| |+++|+++|+++.+
T Consensus 2 ~~~~~lg~~y~~-~~------~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LG------DYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH-TT------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cC------CHHHHHHHHHHHHh
Confidence 578899999976 55 89999999999875
No 179
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.77 E-value=3.6 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+|++.+|.+|.. .+|.++|+..|++..+
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 477888888865 5688888888877665
No 180
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.72 E-value=6.3 Score=37.78 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=45.1
Q ss_pred ccCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh----CCCHH----HHHHHHHHHH
Q 015393 148 CLQNRGSGASLMAKAAIS-SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF----LGHID----ALRELGHCLQ 218 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~-G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~----~G~~~----A~~~Lg~~y~ 218 (408)
..+++++|...+.+|++. -+-.+.|.-+..|+.-.-.-+..+-+.+++.+|+||.+ .|.++ |.-.-|.++.
T Consensus 43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le 122 (308)
T KOG1585|consen 43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE 122 (308)
T ss_pred hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 456666666667666622 12222222222221110000111245677788888755 46554 2233345554
Q ss_pred cCCCccccHHHHHHHHHHHHH
Q 015393 219 DGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 219 ~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
..++++|+.+|++|++
T Consensus 123 -----nv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 123 -----NVKPDDALQLYQRALA 138 (308)
T ss_pred -----cCCHHHHHHHHHHHHH
Confidence 3678888888888875
No 181
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.61 E-value=71 Score=30.92 Aligned_cols=123 Identities=12% Similarity=0.137 Sum_probs=78.9
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCHH-HHHH--hHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC
Q 015393 110 TFAIKANNWSESAHRFLKLCADAGNVE-ACYT--LGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG 184 (408)
Q Consensus 110 ~~~~~~~~~~~~A~~~l~~aAe~G~~~-A~~~--LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 184 (408)
++-+......++|+++|..-.+..-.+ +.+. ++.+- ..+....|++-+..=-+. ++.+|+..|+.+|.. .|
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk--a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~- 168 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK--AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EG- 168 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-Hh-
Confidence 333444444577888887555543222 2222 22222 233333555554444443 799999999999975 23
Q ss_pred CCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 185 SKNDKDLRAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 185 ~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++++|...|+.-.-.. ++.-.-.||..+++ .|...|++-|+++|.+|.+...
T Consensus 169 -----~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 169 -----DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -----HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhCh
Confidence 8999999999887543 33344458877766 3447899999999999998654
No 182
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.23 E-value=2.8 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=18.8
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAI 164 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~ 164 (408)
.+.+.+|.+|. ..+++++|+.+|+++..
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHc
Confidence 35566777776 46677777777776654
No 183
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=76.62 E-value=9.2 Score=41.28 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=84.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHh------hccCCHHHHHHHHHHHHhcCcHHHHHHHHHHH---HcCCC
Q 015393 113 IKANNWSESAHRFLKLCADAGNVEACYTLGMIRF------YCLQNRGSGASLMAKAAISSHAQALYSLAVIQ---FNGSG 183 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~------~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y---~~G~G 183 (408)
+....|.+++++.|++....=-..-.|.|-..|+ ++...++.|..+|++|.+.--+...-.+=++| ..-.|
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 3444456778877777776667778888888887 46678999999999999966555555555555 34456
Q ss_pred CCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC----CCccccHHHHHHHHHHHHHc
Q 015393 184 GSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG----YGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 184 v~~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G----~Gv~~d~~~A~~w~~kAA~~ 240 (408)
. ...|+..|++|...-+..-++.|-.+|..- +||++ -+..|++|.+.
T Consensus 601 L------ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~----TR~iYekaIe~ 651 (835)
T KOG2047|consen 601 L------ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR----TREIYEKAIES 651 (835)
T ss_pred H------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc----cHHHHHHHHHh
Confidence 3 348999999999998888888888877432 46554 35667777763
No 184
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.42 E-value=12 Score=34.19 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHH
Q 015393 154 SGASLMAKAAIS--SHAQALYSLAVIQ 178 (408)
Q Consensus 154 ~A~~~~~kAA~~--G~~~A~~~Lg~~y 178 (408)
+|+.=|+.|... ...+|+++||..|
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 344444444332 3445555555555
No 185
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.28 E-value=38 Score=34.45 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHH----HcCCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc------C------cHHHHHHHHHHH
Q 015393 119 SESAHRFLKLCA----DAGNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS------S------HAQALYSLAVIQ 178 (408)
Q Consensus 119 ~~~A~~~l~~aA----e~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~------G------~~~A~~~Lg~~y 178 (408)
.++++++|++|. +.+|+ ..+..||.+|- ..+|++||+-|..+|++. + +..++|.|++.|
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 456777777654 34444 35666777765 579999999999999875 2 345777888877
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHH----hCCC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAA----FLGH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA----~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.. .| .+..|.++.+.|. +.|+ ...+.-+|-+|.. ..|.+.|+.=|+.|.-
T Consensus 217 R~-~G------~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 217 RL-LG------RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAMG 274 (518)
T ss_pred HH-hc------ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHHH
Confidence 43 23 3334555655553 4575 4467778999976 6789999999998863
No 186
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.21 E-value=33 Score=31.88 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC------cHHHHHHHHHHHHcCCCCCCCcc
Q 015393 119 SESAHRFLKLCAD---AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS------HAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 119 ~~~A~~~l~~aAe---~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G------~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
++.|..-|-++.. ..+++-++.||.+|. ..|..+++.+|.++-+.- +++-...|+.+|.. .|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~------ 192 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LK------ 192 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hc------
Confidence 4567666654443 358999999999987 899999999999998763 67788899999864 33
Q ss_pred CHHHHHHH
Q 015393 190 DLRAGVAL 197 (408)
Q Consensus 190 d~~kA~~~ 197 (408)
++++|.-|
T Consensus 193 ~~e~AYiw 200 (203)
T PF11207_consen 193 NYEQAYIW 200 (203)
T ss_pred chhhhhhh
Confidence 67777666
No 187
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.09 E-value=6.6 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 207 IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 207 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
..++.+||.+|.. ..+.++|..|+++|.+
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 3567888888866 6788888888888876
No 188
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=74.04 E-value=37 Score=37.21 Aligned_cols=47 Identities=11% Similarity=-0.169 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS 166 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G 166 (408)
..++|..+|..- ...|..++..|...|. ..++.++|+++|++--+.|
T Consensus 274 ~~~~A~~vf~~m-~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 274 DIEDARCVFDGM-PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred CHHHHHHHHHhC-CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcC
Confidence 456666666532 3345666666666655 4566666666666655554
No 189
>PRK04841 transcriptional regulator MalT; Provisional
Probab=73.87 E-value=48 Score=37.26 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHH----cCCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc------HHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCAD----AGNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH------AQALYSLAVIQ 178 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe----~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~------~~A~~~Lg~~y 178 (408)
...++|..++.++.+ .|+. .+..++|.+++ ..+++..|..+++++.+. |. ......+|.++
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 346677777776653 2332 35667788877 689999999999887653 21 12344667666
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAFL----G---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.. .| ++++|..++.++... + .+.+...+|.++.. ..|.++|..++.++..
T Consensus 584 ~~-~G------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 584 WE-WA------RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLEN 640 (903)
T ss_pred HH-hc------CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 44 36 888999999988653 1 24455557777653 5788999999988854
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.49 E-value=40 Score=30.82 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcC-CCC--
Q 015393 118 WSESAHRFLKLCADA-----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFNG-SGG-- 184 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~-----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G-~Gv-- 184 (408)
...+|+..|++.... --+.|++.||..|+ ..+|+..|+..|++-... --+.|+|.+|..+..- .+.
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchh
Confidence 357788888877664 24579999999998 689999999999987765 2456999999987543 232
Q ss_pred -CCCccCHHHHHHHHHHHHh
Q 015393 185 -SKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 185 -~~~~~d~~kA~~~~~kAA~ 203 (408)
..+.....+|+..|+.-.+
T Consensus 99 ~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp TT---HHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHH
Confidence 3444466788888888765
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=72.51 E-value=54 Score=36.85 Aligned_cols=110 Identities=19% Similarity=0.137 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHc---CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCC
Q 015393 118 WSESAHRFLKLCADA---GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGS 182 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~---G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~ 182 (408)
..++|..+++.+.+. ++. .+...+|.++. ..++++.|..++++|... |+ ..+..++|.++.. .
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~ 544 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-Q 544 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-C
Confidence 467888888877652 222 35566777766 689999999999998743 22 3466778888754 4
Q ss_pred CCCCCccCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 183 GGSKNDKDLRAGVALCARAAFL----GH------IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~----G~------~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
| ++..|..+++++.+. |. ......+|.++.. ..+.++|..++.++.+
T Consensus 545 G------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G------FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLE 601 (903)
T ss_pred C------CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHH
Confidence 5 888999999888663 21 1223456666643 3577888888887755
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=72.18 E-value=20 Score=40.63 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 149 LQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
.+|++++++..+++.+. ++--|++.||+.|..-.+ |+++|.+-|..||+. .+.-|.--|+++|..
T Consensus 15 nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q------~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQ------DLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccC------CHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 34555555555555544 345555555555543222 555555555555554 345555555555543
No 193
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.78 E-value=13 Score=35.41 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC-HHH---HHHHH
Q 015393 149 LQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH-IDA---LRELG 214 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~-~~A---~~~Lg 214 (408)
..|+++|+..+++|.+- |. +.=...||.+|++. .+|+++|+.+|++|++- |. ..+ +..|=
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd------l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD------LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh------HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 56888999999888754 21 11234678888763 34999999999999983 22 111 11111
Q ss_pred HHHHcCCCccccHHHHHHHHHHHHH
Q 015393 215 HCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 215 ~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
..-.. +.-..+.+|+..|++-+.
T Consensus 160 vA~ya--a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 160 VAQYA--AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 11000 223466788888877665
No 194
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.90 E-value=30 Score=30.25 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCHHHHHHH
Q 015393 166 SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALREL 213 (408)
Q Consensus 166 G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~~A~~~L 213 (408)
-+|+-.+.||..|.. .| |..++-+++++|++.|-.+|+.++
T Consensus 118 ~~p~~L~kia~Ay~k-lg------~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 118 INPEFLVKIANAYKK-LG------NTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp S-HHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHH-hc------chhhHHHHHHHHHHhchHHHHHHh
Confidence 355555555555532 34 555666666666666666665543
No 195
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=70.80 E-value=26 Score=38.44 Aligned_cols=77 Identities=13% Similarity=0.010 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHcC-CCCCCCccCHHHHHH
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH-AQALYSLAVIQFNG-SGGSKNDKDLRAGVA 196 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~-~~A~~~Lg~~y~~G-~Gv~~~~~d~~kA~~ 196 (408)
.++|..+|.+..+ -|...+..|...|. ..++.++|+++|++..+.|. |......+++-... .| ++++|.+
T Consensus 376 ~~~A~~vf~~m~~-~d~~t~n~lI~~y~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g------~~~~a~~ 447 (697)
T PLN03081 376 MEDARNVFDRMPR-KNLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG------LSEQGWE 447 (697)
T ss_pred HHHHHHHHHhCCC-CCeeeHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC------cHHHHHH
Confidence 4566666654332 35555555555554 45677777777777666652 22222222222111 22 5556666
Q ss_pred HHHHHHh
Q 015393 197 LCARAAF 203 (408)
Q Consensus 197 ~~~kAA~ 203 (408)
+|....+
T Consensus 448 ~f~~m~~ 454 (697)
T PLN03081 448 IFQSMSE 454 (697)
T ss_pred HHHHHHH
Confidence 6666544
No 196
>PLN03077 Protein ECB2; Provisional
Probab=69.61 E-value=89 Score=35.17 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHH
Q 015393 119 SESAHRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAK 161 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~k 161 (408)
.+.+.+++....+.| |...+..|-.+|. ..++.++|.+.|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~ 348 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEKVFSR 348 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHHHHhh
Confidence 445555555555555 4445555555544 34556666666554
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.28 E-value=1.2e+02 Score=29.77 Aligned_cols=80 Identities=21% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 120 ESAHRFLKLCADA--GNVEACYTLGMIRFY--CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 120 ~~A~~~l~~aAe~--G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..|..-|.+|... .|++..-.+|.++++ +..+..++...|++|... .++.|++.||.-++. .| |+.+
T Consensus 173 ~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g------~~~~ 245 (287)
T COG4235 173 SDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QG------DYAE 245 (287)
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cc------cHHH
Confidence 4566666666654 588888888877764 567888999999999876 478899999999975 34 8899
Q ss_pred HHHHHHHHHhCCC
Q 015393 194 GVALCARAAFLGH 206 (408)
Q Consensus 194 A~~~~~kAA~~G~ 206 (408)
|+..+++=.+...
T Consensus 246 A~~~Wq~lL~~lp 258 (287)
T COG4235 246 AAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHhcCC
Confidence 9998888776543
No 198
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=67.66 E-value=56 Score=35.71 Aligned_cols=114 Identities=17% Similarity=0.103 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHhHHHHh-hccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393 121 SAHRFLKLCADAGNVEACYTLGMIRF-YCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA 199 (408)
Q Consensus 121 ~A~~~l~~aAe~G~~~A~~~LG~~y~-~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~ 199 (408)
+|...|.++--.+--.+.+.|..+.+ .-.+|.+.|-..+.+|.+.--..+....-.|.+.+.+.. -.+++.-++
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r-----kTks~DALk 811 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR-----KTKSIDALK 811 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc-----chHHHHHHH
Confidence 45555555444433344444444444 234666677767777666544444445555555554432 234444444
Q ss_pred HHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH----cCCHHH
Q 015393 200 RAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA----RELAAV 245 (408)
Q Consensus 200 kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~----~G~~~A 245 (408)
|- .+++.-...+|.++.. ++-+++|+.||.+|.. .|+++|
T Consensus 812 kc--e~dphVllaia~lfw~----e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 812 KC--EHDPHVLLAIAKLFWS----EKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred hc--cCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHccCCccchHHH
Confidence 32 5788888889988865 7889999999999985 466666
No 199
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.88 E-value=81 Score=33.07 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC------cHHHHHHHHHHHHcCCCCCCC
Q 015393 116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS------HAQALYSLAVIQFNGSGGSKN 187 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G------~~~A~~~Lg~~y~~G~Gv~~~ 187 (408)
....+.+...+...-. ...+--.+.-|.++. ..+|.++|+++|++|.+.. +.-..|.++.+|.-
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~------- 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF------- 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-------
Confidence 3346677777776655 455555666677776 7899999999999988643 33456677777653
Q ss_pred ccCHHHHHHHHHHHHhCCC-HHHHH--HHHHHHH-cC--CCccccHHHHHHHHHHHHHcC
Q 015393 188 DKDLRAGVALCARAAFLGH-IDALR--ELGHCLQ-DG--YGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 188 ~~d~~kA~~~~~kAA~~G~-~~A~~--~Lg~~y~-~G--~Gv~~d~~~A~~w~~kAA~~G 241 (408)
..|.++|.++|.+-.+... ..|.| ..|.||. .| ...+...++|..+|.++...-
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 2289999999999987643 44443 3455553 22 123445588889998887643
No 200
>PLN03077 Protein ECB2; Provisional
Probab=64.76 E-value=68 Score=36.11 Aligned_cols=45 Identities=11% Similarity=-0.039 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS 166 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G 166 (408)
.++|...|... .-|..++..|-..|. ..++.++|+++|++-.+.|
T Consensus 540 ~~~A~~~f~~~--~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 540 MNYAWNQFNSH--EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHHhc--CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcC
Confidence 45566666544 455555555555554 4566666666666666555
No 201
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=64.45 E-value=37 Score=36.16 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=68.2
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC----------
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---------- 204 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---------- 204 (408)
+.|.|++.|. ..+++++|++|+.+|.++- .++-++.-|.+|.. .| |+.+|.+++..|-.+
T Consensus 196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G------~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AG------DLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHhCChhhHHHHHH
Confidence 5678888887 5899999999999999985 68889999999964 45 899999999999763
Q ss_pred --------CCHH-HHHHHHHHHHcCCCccccHH-HHHHHHHHHHH
Q 015393 205 --------GHID-ALRELGHCLQDGYGVRQNIA-EGRRFLVQANA 239 (408)
Q Consensus 205 --------G~~~-A~~~Lg~~y~~G~Gv~~d~~-~A~~w~~kAA~ 239 (408)
|.++ |.-.++.....+.+...|+. .=.-||.....
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 3332 55555555555544445543 23356665543
No 202
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=63.49 E-value=2.1e+02 Score=31.54 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 119 SESAHRFLKLCAD-AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 119 ~~~A~~~l~~aAe-~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
.+.|..+|.+|-. .|...-++.-..+.. ...+.++|+++++.+... .++.-...||.+|.+- + +++.|.
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er-~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~-~------~ie~aR 705 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLER-YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM-E------NIEMAR 705 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHH-HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH-H------HHHHHH
Confidence 5566666666633 344444444444333 456667777777666665 3455666677776542 1 556666
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+-|...... +.+.-...|+.+=+. ..++.+|+..+.+|--+
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHH----hcchhhHHHHHHHHHhc
Confidence 666555444 344444445544432 22566777777777654
No 203
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=63.00 E-value=3.2 Score=36.08 Aligned_cols=36 Identities=31% Similarity=0.742 Sum_probs=28.1
Q ss_pred CCCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhch
Q 015393 324 GPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWK 367 (408)
Q Consensus 324 ~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~ 367 (408)
.|....|+ -||.+.. ..|..|+ .+|||..|-..|-.
T Consensus 115 KP~r~fCa--VCG~~S~-----ysC~~CG-~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 115 KPLRKFCA--VCGYDSK-----YSCVNCG-TKYCSVRCLKTHNE 150 (156)
T ss_pred CCcchhhh--hcCCCch-----hHHHhcC-Cceeechhhhhccc
Confidence 46788899 6776655 6688887 78999999987754
No 204
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=62.70 E-value=27 Score=33.06 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=40.0
Q ss_pred HHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHc
Q 015393 122 AHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAA--ISSHAQALYSLAVIQFN 180 (408)
Q Consensus 122 A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA--~~G~~~A~~~Lg~~y~~ 180 (408)
|..||.+|... ++...++.||+++.+ .+|.-.|+.||-+|. ...++.|.-||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777653 566777888888874 677778888888765 44566778888888765
No 205
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.50 E-value=8.3 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=14.5
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHH
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMA 160 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~ 160 (408)
.+.++||..|. ..+++++|..+++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHh
Confidence 35566666665 5666666666654
No 206
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=60.67 E-value=8 Score=33.57 Aligned_cols=29 Identities=41% Similarity=0.960 Sum_probs=22.9
Q ss_pred cCCccCCccccCChhHHHhhchhhhhh--hchhhhhh
Q 015393 346 RRCSVCGAVNYCSRACQALDWKLRHKA--DCAPAERW 380 (408)
Q Consensus 346 ~~C~~C~~~~YCs~~cQ~~dW~~~Hk~--~C~~~~~~ 380 (408)
.+|..|. +-|||-.| |+ .||. .|.+....
T Consensus 18 YKCpkC~-vPYCSl~C----fK-iHk~tPq~~~ve~~ 48 (157)
T KOG2857|consen 18 YKCPKCS-VPYCSLPC----FK-IHKSTPQCETVEDN 48 (157)
T ss_pred ccCCCCC-Cccccchh----hh-hccCCccccccCCc
Confidence 6799886 88999999 88 4888 78776643
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=60.51 E-value=1.2e+02 Score=26.60 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=52.2
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---C--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC----
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---S--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---- 204 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---- 204 (408)
.+..+|.-|.--+ ..+++.+|++.|+.--.. | ...|+..|+..|+. .+ ++.+|+.-+++=..+
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~------~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QG------DYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHhCCCC
Confidence 4455555565555 567888888887765433 1 35688888888764 22 778888888887775
Q ss_pred -CCHHHHHHHHHHHHc
Q 015393 205 -GHIDALRELGHCLQD 219 (408)
Q Consensus 205 -G~~~A~~~Lg~~y~~ 219 (408)
.-..|+|..|+.++.
T Consensus 81 p~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYE 96 (142)
T ss_pred CCccHHHHHHHHHHHH
Confidence 234578888877755
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=59.68 E-value=1.2e+02 Score=29.32 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHcCCCCCCCccCHHHHH
Q 015393 119 SESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVI-QFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~-y~~G~Gv~~~~~d~~kA~ 195 (408)
.+.|...|.+|-+.+ +.+.+...+.+.+.+.+|.+.|...|+.+...=-....|.+..+ |+...+ |...+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~------d~~~aR 90 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN------DINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC------cHHHHH
Confidence 467888888887654 35667777777666788999999999999876322223332222 222344 888999
Q ss_pred HHHHHHHhC-CCHH---HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 196 ALCARAAFL-GHID---ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 196 ~~~~kAA~~-G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+|+++... .... ..+.-=.-|+..+| |++.....+.++.+.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYG---DLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 999999875 2222 34443344444445 788888888887764
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=59.64 E-value=1.6e+02 Score=27.86 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHc--CCHH---HHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHc-C-----
Q 015393 118 WSESAHRFLKLCADA--GNVE---ACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFN-G----- 181 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~---A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~-G----- 181 (408)
..++|+..|+...+. +.+. |++.||..|+ ..+++.+|+.+|++..+. ..+.|+|.+|..+.. +
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 456888888866553 3444 4599999998 689999999999999877 357799999987522 1
Q ss_pred --CCCCCCccCH---HHHHHHHHHHHhC
Q 015393 182 --SGGSKNDKDL---RAGVALCARAAFL 204 (408)
Q Consensus 182 --~Gv~~~~~d~---~kA~~~~~kAA~~ 204 (408)
........|. .+|+.-|++-.+.
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 1111112233 4677777776653
No 210
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.71 E-value=1.4e+02 Score=28.91 Aligned_cols=83 Identities=18% Similarity=0.046 Sum_probs=51.2
Q ss_pred hhhcCCHHHHHHHHHHHHH-cCCHHHHHHhHHHHhh------ccCCHHHHHHHHHHHH----hcCcHH-H---HHHHHHH
Q 015393 113 IKANNWSESAHRFLKLCAD-AGNVEACYTLGMIRFY------CLQNRGSGASLMAKAA----ISSHAQ-A---LYSLAVI 177 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe-~G~~~A~~~LG~~y~~------~~~d~~~A~~~~~kAA----~~G~~~-A---~~~Lg~~ 177 (408)
.+..+..++|...|.+|++ .-+-.+.|.-+..|.+ ....+.+++.+|+||. +.|.++ | .=.-|.+
T Consensus 41 fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~ 120 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA 120 (308)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 3444456677777777773 2233444444444441 3466778999999997 457655 2 2233344
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHh
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~ 203 (408)
..+ .++++|+.+|++++.
T Consensus 121 len--------v~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 121 LEN--------VKPDDALQLYQRALA 138 (308)
T ss_pred hhc--------CCHHHHHHHHHHHHH
Confidence 432 278899999999986
No 211
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=57.83 E-value=14 Score=34.91 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=34.6
Q ss_pred HHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHc
Q 015393 155 GASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF--LGHIDALRELGHCLQD 219 (408)
Q Consensus 155 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~--~G~~~A~~~Lg~~y~~ 219 (408)
|..||.+|... ++...+++||+++.. ..|.-.|+.||-||.- ..++.|.-+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-------~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-------QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-------TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-------ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45677777766 466677777777742 2256666677776653 3556666677666644
No 212
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=55.43 E-value=1.1e+02 Score=29.79 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---cCCCCCCCccCHHHHH
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQF---NGSGGSKNDKDLRAGV 195 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~---~G~Gv~~~~~d~~kA~ 195 (408)
.+.|+.++.+. ++.++...+=.+|+ -.+.++.|.+-++..-+...-.-..+|+..+. .|.. .+..|+
T Consensus 118 ~~~AL~~l~~~---~~lE~~al~Vqi~L-~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e------~~~~A~ 187 (290)
T PF04733_consen 118 YEEALKLLHKG---GSLELLALAVQILL-KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE------KYQDAF 187 (290)
T ss_dssp HHHHHCCCTTT---TCHHHHHHHHHHHH-HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT------CCCHHH
T ss_pred HHHHHHHHHcc---CcccHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch------hHHHHH
Confidence 45555555433 55665555555555 34455556566655554444333444443322 1221 334566
Q ss_pred HHHHHHHhC-C-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 196 ALCARAAFL-G-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 196 ~~~~kAA~~-G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
..|+.-++. | .+..+.-++.++.. .+++++|...+.+|.+
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 666665554 2 23344445555533 4566666666666554
No 213
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=55.36 E-value=2.9e+02 Score=29.50 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHH----HHHHHHHHHHhcC-----------cH----HHHHHHHHHH
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRG----SGASLMAKAAISS-----------HA----QALYSLAVIQ 178 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~----~A~~~~~kAA~~G-----------~~----~A~~~Lg~~y 178 (408)
+...+..|+......|-|....+|-.+|.. ..... ....|.......| .+ -+.|.|+..|
T Consensus 126 F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 126 FKERLDEYLRPQLRKGVPSLFSNLKPLYKD-PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHcC-hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 466788999999999999999999888872 11111 1122222211111 11 2567888888
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS 248 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~ 248 (408)
.. .| ++.+|+++..+|.+. -.++-++.-|.+|.. ..|+.+|..|+..|-......-+-+
T Consensus 205 d~-~g------~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 205 DY-LG------DYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKEAAEAMDEARELDLADRYIN 265 (517)
T ss_pred HH-hC------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhCChhhHHHH
Confidence 43 55 889999999999997 468889999999977 7899999999999998877665444
No 214
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=54.50 E-value=47 Score=36.01 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 015393 124 RFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARA 201 (408)
Q Consensus 124 ~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kA 201 (408)
..|++=.+.|+.-|+ .|+.+. +.++.++|..+-+.+... ++.-.++.+|++|. .++++.+|++||+.|
T Consensus 32 ~iL~k~~eHgeslAm--kGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-------~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 32 QILKKFPEHGESLAM--KGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-------SDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHHhCCccchhHHh--ccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-------hhhhHHHHHHHHHHH
Confidence 344444444444444 343333 556666777776666543 34556667777765 234677777777777
Q ss_pred HhC--CCHHHHHHHHH
Q 015393 202 AFL--GHIDALRELGH 215 (408)
Q Consensus 202 A~~--G~~~A~~~Lg~ 215 (408)
... .|..-.+.|+.
T Consensus 102 l~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSL 117 (700)
T ss_pred HhcCCCcHHHHHHHHH
Confidence 653 34444444443
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=54.10 E-value=53 Score=28.77 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=60.1
Q ss_pred hcCCHHHHHHHHHHHHHcC------CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCC-
Q 015393 115 ANNWSESAHRFLKLCADAG------NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGS- 182 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~G------~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~- 182 (408)
.++| ++|+..|+. .+.- -..|++.||..|+ ..+++++|+.-+++=.... -+.|+|..|+.+..-.
T Consensus 23 ~~~Y-~~A~~~le~-L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 23 KGNY-EEAIKQLEA-LDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred hCCH-HHHHHHHHH-HHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 3444 556666653 3322 3468999999998 7899999999999988773 4568999998886542
Q ss_pred -------CCCCCccCHHHHHHHHHHHHh
Q 015393 183 -------GGSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 183 -------Gv~~~~~d~~kA~~~~~kAA~ 203 (408)
++.+++....+|+.-|++-..
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 555545556777777776554
No 216
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.97 E-value=3.2e+02 Score=29.09 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393 142 GMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 142 G~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
|.-++ ..+|+..|+..|.+|.... ++.++-|.|.+|.. .| ++..|+.-.+++.++ ..+.++..=|.++
T Consensus 365 Gne~F-k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k-L~------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 365 GNEAF-KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK-LG------EYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHH-hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 55555 6799999999999999885 67788889998864 33 566676666666665 3455666666666
Q ss_pred HcCCCccccHHHHHHHHHHHHHcC
Q 015393 218 QDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 218 ~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+. -+++.+|.+-|.+|.+..
T Consensus 437 ~~----mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 437 RA----MKEYDKALEAYQEALELD 456 (539)
T ss_pred HH----HHHHHHHHHHHHHHHhcC
Confidence 43 456666666666666544
No 217
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=51.88 E-value=53 Score=36.11 Aligned_cols=81 Identities=20% Similarity=0.137 Sum_probs=59.8
Q ss_pred HHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHH
Q 015393 157 SLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGR 231 (408)
Q Consensus 157 ~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~ 231 (408)
.+|+||-+.+ ++.|++.+|..... .+|+.++.+.|+.+.+. +.....|.+|.+... -.+.+.|.
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~-------~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av 539 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILS-------NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV 539 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhcccccc-------chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH
Confidence 5667766655 45688888876654 23999999999999886 678889999988876 67888888
Q ss_pred HHHHHHHHc--CCHHHHhh
Q 015393 232 RFLVQANAR--ELAAVLSS 248 (408)
Q Consensus 232 ~w~~kAA~~--G~~~A~~~ 248 (408)
+.|...... ++..|..+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnN 558 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNN 558 (777)
T ss_pred HHHHHHhhcCCCchhhhhh
Confidence 888887753 44444333
No 218
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=51.65 E-value=47 Score=32.49 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
+..+.|..-++..-+..+-....+|+..+.. +..++..|+..|+.-++. ..+.-+..+++++.. .| ++
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~------~~ 217 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LG------HY 217 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-------H
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hC------CH
Confidence 4467788888777666655556666655542 346688899999887776 355566667777754 44 78
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
++|...+..|.+. ++++...++..+...
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8999999988765 678888888887644
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.56 E-value=2.3e+02 Score=27.22 Aligned_cols=116 Identities=9% Similarity=-0.021 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHH---cCCHHHHHHhHHHHhh------ccC-CHHHHHHHHHHHHhc----C-----c-------HHHH
Q 015393 118 WSESAHRFLKLCAD---AGNVEACYTLGMIRFY------CLQ-NRGSGASLMAKAAIS----S-----H-------AQAL 171 (408)
Q Consensus 118 ~~~~A~~~l~~aAe---~G~~~A~~~LG~~y~~------~~~-d~~~A~~~~~kAA~~----G-----~-------~~A~ 171 (408)
..+.|..++.|+-. ..+|.-.-.|+.+++. ..+ +++.|+.|+++|.+- + + ..-+
T Consensus 8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 45677888887766 4477766666666661 356 899999999999776 3 1 2245
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 172 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 172 ~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
..|+..|... + ...+..+|....+.+-. .|+....+.|..-+..+ .-|.+...+-+.+....
T Consensus 88 ~~La~~~l~~-~---~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 88 RLLANAYLEW-D---TYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHcC-C---ChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence 5667777543 3 23367788887777743 47777777777777665 45555555555555543
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=51.02 E-value=1.5e+02 Score=30.29 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHc------CCHHHHHHhHHHHh-----hccCCHHHHHHHHHH----HHhcCc----HHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA------GNVEACYTLGMIRF-----YCLQNRGSGASLMAK----AAISSH----AQALYSLAVI 177 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~------G~~~A~~~LG~~y~-----~~~~d~~~A~~~~~k----AA~~G~----~~A~~~Lg~~ 177 (408)
.+.++|..|..+|++. ++..+.|.-..+|. --.+....|.++.+. |.+.|+ +..+..+|.|
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4578999999999885 56665555444443 123444455555554 455674 5577789999
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHc
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAF--------LGHIDALRELGHCLQD 219 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~--------~G~~~A~~~Lg~~y~~ 219 (408)
|.+ .| |.+.|+.-|+.|.. .|.++|+.-.+.+...
T Consensus 256 yR~-~g------d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 256 YRS-RG------DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred HHh-cc------cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 975 45 88899999999854 3555666666777644
No 221
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.29 E-value=50 Score=32.84 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH--cCCHHHHh
Q 015393 190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA--RELAAVLS 247 (408)
Q Consensus 190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~--~G~~~A~~ 247 (408)
+.++|..+|+-|... .++++..++|.+.+. .+|+-+|-.+|.+|.. -|+..|+.
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHh
Confidence 445666666666554 456666666666544 3556666666666543 34444433
No 222
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=47.05 E-value=8.4 Score=24.37 Aligned_cols=28 Identities=57% Similarity=1.283 Sum_probs=17.6
Q ss_pred CcCcCCCCCCCccccccccCCccCCccccCChhHHH
Q 015393 328 RLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQA 363 (408)
Q Consensus 328 ~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~ 363 (408)
..|. .|+.... -+|.+|+. .|||.+|-+
T Consensus 3 ~~C~--vC~~~~k-----Y~Cp~C~~-~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCS--VCGNPAK-----YRCPRCGA-RYCSLACYK 30 (30)
T ss_dssp EEET--SSSSEES-----EE-TTT---EESSHHHHH
T ss_pred CCCc--cCcCCCE-----EECCCcCC-ceeCcEeEC
Confidence 4577 4766433 67999984 599999853
No 223
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=46.70 E-value=2.4e+02 Score=28.93 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=77.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHh-hccCCHHHHHHHHHHHHhc-CcHH--HHHHHHHHHHcCCCCCCCc
Q 015393 113 IKANNWSESAHRFLKLCADAGNVEACYTLGMIRF-YCLQNRGSGASLMAKAAIS-SHAQ--ALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~-~~~~d~~~A~~~~~kAA~~-G~~~--A~~~Lg~~y~~G~Gv~~~~ 188 (408)
+..++| .+|.+.+.++++.+.......|.-... +..+|...+=.|+.+|++. |+.. .....+.+..+ .|
T Consensus 95 l~eG~~-~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~----- 167 (400)
T COG3071 95 LFEGDF-QQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RR----- 167 (400)
T ss_pred HhcCcH-HHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CC-----
Confidence 334444 678888888888886655544443333 4568888888888888887 4443 33334444433 33
Q ss_pred cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
|+..|..-..++.++ -+++.+...-.+|.. .++......++.+=.+.|-
T Consensus 168 -d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 168 -DYPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGL 218 (400)
T ss_pred -CchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccC
Confidence 666777777777776 377787777777766 6677777777766666554
No 224
>PRK01343 zinc-binding protein; Provisional
Probab=45.36 E-value=17 Score=26.66 Aligned_cols=15 Identities=33% Similarity=0.873 Sum_probs=12.1
Q ss_pred ccccCChhHHHhhch
Q 015393 353 AVNYCSRACQALDWK 367 (408)
Q Consensus 353 ~~~YCs~~cQ~~dW~ 367 (408)
..-|||+.|+..|-.
T Consensus 23 ~rPFCS~RC~~iDLg 37 (57)
T PRK01343 23 AYPFCSERCRDIDLN 37 (57)
T ss_pred CCcccCHHHhhhhHH
Confidence 457999999999843
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.29 E-value=1e+02 Score=31.91 Aligned_cols=118 Identities=14% Similarity=0.011 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHh---------------hccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRF---------------YCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSG 183 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~---------------~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~G 183 (408)
.++++..|+++...+- .....+.+++ +-.+++.+|.+.|..|... +|.-.-.++.+|.+---
T Consensus 219 ~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 219 ADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-DPSNKKTNAKLYGNRAL 295 (486)
T ss_pred hHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-CccccchhHHHHHHhHh
Confidence 6678888888776652 2333333333 1358899999999999876 33333344444433322
Q ss_pred CCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393 184 GSKNDKDLRAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 184 v~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
|......+.+|+.-...|+... ++.|+..-|.||.. -.+.++|++.|++|......
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~----le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA----LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccc
Confidence 2112237789999999999875 67889999999954 67889999999999986543
No 226
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=44.87 E-value=1.1e+02 Score=33.34 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcc
Q 015393 149 LQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVR 224 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~ 224 (408)
.+.+.+++...++-... .|++..-..|..+ +..| +.++|..+.+.+... +..-.++-||.++.. .
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L-~~lg------~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----d 88 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTL-NCLG------KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----D 88 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchh-hccc------chHHHHHHHHHHhccCcccchhHHHHHHHHhh----h
Confidence 44555555554443321 2445555556555 5667 677999999988763 456678899999976 8
Q ss_pred ccHHHHHHHHHHHHHcCC
Q 015393 225 QNIAEGRRFLVQANAREL 242 (408)
Q Consensus 225 ~d~~~A~~w~~kAA~~G~ 242 (408)
+++.+|++||+-|...+-
T Consensus 89 K~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEK 106 (700)
T ss_pred hhHHHHHHHHHHHHhcCC
Confidence 999999999999987543
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=43.65 E-value=2.5e+02 Score=29.47 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHH-hHHH-------Hh-h---ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC
Q 015393 116 NNWSESAHRFLKLCADAGNVEACYT-LGMI-------RF-Y---CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG 181 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G~~~A~~~-LG~~-------y~-~---~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G 181 (408)
..+.+.++.++.++++.++..+-+. |.++ .+ + ...+...+.+.+...-.. ..+-=.+.-|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 3457889999999999887654432 1111 11 1 245677787777776663 344445566666643
Q ss_pred CCCCCCccCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 182 SGGSKNDKDLRAGVALCARAAFLGHI------DALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~G~~------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.| |+++|+++|++|.+.... -..|+||.++. ...|.++|..+|.+-.+..
T Consensus 280 ~g------~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~----~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 280 KG------NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM----FQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred hc------CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH----HHchHHHHHHHHHHHHhcc
Confidence 33 899999999998863332 35666676663 4789999999988887743
No 228
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=43.07 E-value=2.5e+02 Score=28.83 Aligned_cols=83 Identities=12% Similarity=0.008 Sum_probs=65.3
Q ss_pred ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccc
Q 015393 148 CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQ 225 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~ 225 (408)
..+.++.|+++|++-.+. ++++.+.|+.+|... + +..+|++++.++.... +.......+..+.. .+
T Consensus 181 ~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~-~------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~ 248 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRER-DPEVAVLLARVYLLM-N------EEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KK 248 (395)
T ss_pred hcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhc-C------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cC
Confidence 457899999999997766 488999999999742 2 5679999999999753 56666677777765 56
Q ss_pred cHHHHHHHHHHHHHcCC
Q 015393 226 NIAEGRRFLVQANAREL 242 (408)
Q Consensus 226 d~~~A~~w~~kAA~~G~ 242 (408)
+.+.|+...++|.+.--
T Consensus 249 ~~~lAL~iAk~av~lsP 265 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP 265 (395)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 77999999999987643
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=42.71 E-value=2.4e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=29.3
Q ss_pred HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHH
Q 015393 131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSL 174 (408)
Q Consensus 131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~L 174 (408)
+.-+|+-.+.||..|- --++..++-+++.+|++.|-.+|+-++
T Consensus 116 ~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 116 EEINPEFLVKIANAYK-KLGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp --S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHhchHHHHHHh
Confidence 4457777777777776 567888888888888888888887665
No 230
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=42.44 E-value=4.3e+02 Score=27.83 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=74.8
Q ss_pred HHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 015393 125 FLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAK--AAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA 202 (408)
Q Consensus 125 ~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~k--AA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA 202 (408)
++-+-.+.+-+.++|-.+..++ ..+.+++|...+.. +..-+++-.+-..+.++.. .+ ...+|.+.|++|.
T Consensus 296 ~~~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~n------k~~~A~e~~~kal 367 (484)
T COG4783 296 LLAKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-AN------KAKEAIERLKKAL 367 (484)
T ss_pred HHHHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------ChHHHHHHHHHHH
Confidence 3333333578889999888887 56677777777765 4455888888888888864 33 6779999999998
Q ss_pred hC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 203 FL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 203 ~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+ +.+.-.+++|.+|..|. +..+|+..+.....+
T Consensus 368 ~l~P~~~~l~~~~a~all~~g----~~~eai~~L~~~~~~ 403 (484)
T COG4783 368 ALDPNSPLLQLNLAQALLKGG----KPQEAIRILNRYLFN 403 (484)
T ss_pred hcCCCccHHHHHHHHHHHhcC----ChHHHHHHHHHHhhc
Confidence 87 45778899999998852 333666666665543
No 231
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=42.27 E-value=27 Score=35.53 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhc
Q 015393 58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLAL 98 (408)
Q Consensus 58 f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~ 98 (408)
-.+||+||+..|..+|. +..|++....+|+.|+.+..
T Consensus 4 Ws~Lp~dll~~i~~~l~----~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLF----SNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCC----cHHHHHHHHhhhhhHHHhcc
Confidence 46899999999999885 56799999999999999854
No 232
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=1.3e+02 Score=32.12 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 015393 150 QNRGSGASLMAKAAISS---------HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG-HIDALRELGH 215 (408)
Q Consensus 150 ~d~~~A~~~~~kAA~~G---------~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~ 215 (408)
+|...+..+|....+.- .|-|+|.||.+|..-.| .+.++.+|+.+|-+-+ +.+-...|++
T Consensus 463 g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g------~~~e~~~~L~kAr~~~~dY~lenRLh~ 532 (546)
T KOG3783|consen 463 GDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG------GLKEARALLLKAREYASDYELENRLHM 532 (546)
T ss_pred CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc------ChHHHHHHHHHHHhhccccchhhHHHH
Confidence 35555555555555331 34566666666655444 3445666666665543 4444444443
No 233
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.39 E-value=48 Score=25.68 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 015393 191 LRAGVALCARAA 202 (408)
Q Consensus 191 ~~kA~~~~~kAA 202 (408)
+.+|+.+..+|.
T Consensus 3 l~kai~Lv~~A~ 14 (75)
T cd02680 3 LERAHFLVTQAF 14 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 234
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=39.94 E-value=15 Score=25.35 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.5
Q ss_pred CccccCChhHHHhhchh
Q 015393 352 GAVNYCSRACQALDWKL 368 (408)
Q Consensus 352 ~~~~YCs~~cQ~~dW~~ 368 (408)
...-|||.+|...|+..
T Consensus 21 ~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 21 DGSLYCSEECRLKDQEK 37 (43)
T ss_pred CCccccCHHHHhHhhhc
Confidence 46789999999999873
No 235
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=67 Score=32.18 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=40.3
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--------HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH 206 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--------~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~ 206 (408)
.+|+.+.+..|. .-+|.+.|++||.+--+.- ..-....||.+|.+-.=|.+ ++++|-.+++ +.|+
T Consensus 104 ~ea~~~kaeYyc-qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~---~iekak~liE---~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYC-QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE---SIEKAKSLIE---EGGD 176 (393)
T ss_pred HHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH---HHHHHHHHHH---hCCC
Confidence 345566665555 4567777777777766552 22355566666655444444 5555555555 2455
Q ss_pred HHHHHHH
Q 015393 207 IDALREL 213 (408)
Q Consensus 207 ~~A~~~L 213 (408)
=+--..|
T Consensus 177 WeRrNRl 183 (393)
T KOG0687|consen 177 WERRNRL 183 (393)
T ss_pred hhhhhhH
Confidence 5544444
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=35.51 E-value=1e+02 Score=29.73 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHc-CCCCCCCcc-CHHHHHHHHHHHHhC----CCH------------
Q 015393 149 LQNRGSGASLMAKAAI---SSHAQALYSLAVIQFN-GSGGSKNDK-DLRAGVALCARAAFL----GHI------------ 207 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~---~G~~~A~~~Lg~~y~~-G~Gv~~~~~-d~~kA~~~~~kAA~~----G~~------------ 207 (408)
++|.+.|..+|.|+-. ...+.-.-.|+.++++ |...- ..+ +++.|+.|+++|.+. +..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5788999999999876 4466666666655433 21111 122 789999999999774 211
Q ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 208 DALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
.....|+..|.. .+.+.+..+|....+.+-
T Consensus 85 ~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 85 SILRLLANAYLE-WDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHHHHH
Confidence 135566777754 445677788888777773
No 237
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.39 E-value=2.9e+02 Score=29.50 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHH--HHHHHHHHhhcCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHHc
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVL--ITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADA 132 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~--l~ck~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe~ 132 (408)
...+.. |.--++.+......- ++.++..+. +-|..+. ..+...+ +.-.....++.....+.+..+|+.+.+.
T Consensus 405 ~~~la~-P~~El~Y~Wngf~~~--s~~~l~k~~~~~~~~~~~--d~Dd~~l-k~lL~g~~lR~Lg~~~~a~~~f~i~~~~ 478 (546)
T KOG3783|consen 405 SILLAS-PYYELAYFWNGFSRM--SKNELEKMRAELENPKID--DSDDEGL-KYLLKGVILRNLGDSEVAPKCFKIQVEK 478 (546)
T ss_pred cccccc-hHHHHHHHHhhcccC--ChhhHHHHHHHHhccCCC--CchHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444 777777777666544 666665222 2222211 1111111 1122333444445678888888888754
Q ss_pred ---------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC
Q 015393 133 ---------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS 166 (408)
Q Consensus 133 ---------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G 166 (408)
=-|-|+|.||.+|+...+-..++..|+.+|-+-+
T Consensus 479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 2567999999999954556899999999998765
No 238
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.98 E-value=12 Score=25.71 Aligned_cols=32 Identities=44% Similarity=1.053 Sum_probs=20.5
Q ss_pred CcCcCCCCCCCccccccccCCccCCccccCChhHHH
Q 015393 328 RLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQA 363 (408)
Q Consensus 328 ~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~ 363 (408)
..|. .|+++.+-+.+..+|= ..|.|||..|..
T Consensus 9 K~C~--~C~rpf~WRKKW~~~W--d~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICP--VCGRPFTWRKKWARCW--DEVKYCSDRCRR 40 (42)
T ss_pred CcCc--ccCCcchHHHHHHHhc--hhhccHHHHhcc
Confidence 5677 6777776433333222 369999999964
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.80 E-value=5.7e+02 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHH
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGM 143 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~ 143 (408)
.++|..++- ....||..+..|+-.
T Consensus 191 ~~~a~~~l~-~~s~GD~R~aLN~LE 214 (436)
T COG2256 191 DEEALDYLV-RLSNGDARRALNLLE 214 (436)
T ss_pred CHHHHHHHH-HhcCchHHHHHHHHH
Confidence 344554443 223355554444433
No 240
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.74 E-value=1.1e+02 Score=30.45 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393 122 AHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA 199 (408)
Q Consensus 122 A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~ 199 (408)
+..++++-...|+++.+.++|.+.+ .+++++.|++-|+.|.+-| ++--.|+++...+.. + ++..|+++-.
T Consensus 131 ~rsLveQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-~------qyasALk~iS 202 (459)
T KOG4340|consen 131 SRSLVEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-R------QYASALKHIS 202 (459)
T ss_pred hHHHHHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-h------hHHHHHHHHH
Confidence 3444555555577778888887766 6788888888888888765 566778888887642 2 6777777777
Q ss_pred HHHhCC
Q 015393 200 RAAFLG 205 (408)
Q Consensus 200 kAA~~G 205 (408)
.-.+.|
T Consensus 203 EIieRG 208 (459)
T KOG4340|consen 203 EIIERG 208 (459)
T ss_pred HHHHhh
Confidence 666654
No 241
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=29.48 E-value=23 Score=34.90 Aligned_cols=35 Identities=34% Similarity=0.849 Sum_probs=21.6
Q ss_pred CCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhch
Q 015393 334 GCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375 (408)
Q Consensus 334 ~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~ 375 (408)
.|+.++.-.++ ..|.+|. ..|||-.|-+ .|+..|.
T Consensus 9 ~C~ic~vq~~~-YtCPRCn-~~YCsl~CYr-----~h~~~Cs 43 (383)
T KOG4317|consen 9 ACGICGVQKRE-YTCPRCN-LLYCSLKCYR-----NHKHSCS 43 (383)
T ss_pred ecccccccccc-ccCCCCC-ccceeeeeec-----CCCccch
Confidence 34444443333 7899997 6799988853 3555553
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.02 E-value=86 Score=33.16 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=55.1
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHHh-------cC-------------cHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAAI-------SS-------------HAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~-------~G-------------~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
+..|||.+++ ..+-+..+..||.+|.. .| .-+-.||+|+.|+. .| .+..|++
T Consensus 285 f~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-~g------rPl~Afq 356 (696)
T KOG2471|consen 285 FNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-SG------RPLLAFQ 356 (696)
T ss_pred eecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-cC------CcHHHHH
Confidence 3467888877 56777888889998875 22 35678999999875 45 4559999
Q ss_pred HHHHHHhC--CCHHHHHHHHHHH
Q 015393 197 LCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 197 ~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
.|.+|... -+|.-+..|+.|.
T Consensus 357 Cf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 357 CFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH
Confidence 99999875 6788888887765
No 243
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.92 E-value=1.6e+02 Score=29.57 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh----CC----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF----LG----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~----~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
-.+|+.+.|..|.+ .| |.+.|++||++.-+ .| -.-....||.+|.+-.-|.+++++|..++++.-
T Consensus 103 v~ea~~~kaeYycq-ig------Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQ-IG------DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 56778888888865 55 77788888776644 34 588999999999888889999999999988776
Q ss_pred H
Q 015393 239 A 239 (408)
Q Consensus 239 ~ 239 (408)
+
T Consensus 176 D 176 (393)
T KOG0687|consen 176 D 176 (393)
T ss_pred C
Confidence 4
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=28.87 E-value=94 Score=27.95 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=53.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc-HH----HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh---C-C
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSH-AQ----ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF---L-G 205 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~-~~----A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~---~-G 205 (408)
..++..||..|. .-+|.+.|++.|.++-+... +. .++++-.+... .+ |......+..+|-. . |
T Consensus 36 r~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~------d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 36 RMALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FG------DWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHHHhccc
Confidence 357788899888 67899999999999876642 11 22222111111 12 66666667666643 2 4
Q ss_pred CHHHHHHH----HHHHHcCCCccccHHHHHHHHHHHH
Q 015393 206 HIDALREL----GHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 206 ~~~A~~~L----g~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
+.+....| |..+. ..+|+.+|...|..+.
T Consensus 108 d~~~~nrlk~~~gL~~l----~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANL----AQRDFKEAAELFLDSL 140 (177)
T ss_pred hHHHHHHHHHHHHHHHH----HhchHHHHHHHHHccC
Confidence 44433322 22221 1568888877777664
No 245
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.59 E-value=94 Score=32.89 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=64.4
Q ss_pred cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHH---hcC---c-----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 015393 132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAA---ISS---H-----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCAR 200 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA---~~G---~-----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~k 200 (408)
.+.+.+.+.-..+++ ..+|+.+|.+++...- +.| - -....|||.|++. .| -+..+..+|.+
T Consensus 237 ~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~------~y~~~~~~F~k 308 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LG------CYQASSVLFLK 308 (696)
T ss_pred CCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hh------hHHHHHHHHHH
Confidence 466777777677766 7899999999987653 333 1 1123456655543 22 45677888888
Q ss_pred HHh-------CC-------------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 201 AAF-------LG-------------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 201 AA~-------~G-------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.. .| ..+-.|++|..|.. ..-+..|++.|.+|...
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh----~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH----SGRPLLAFQCFQKAVHV 364 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh----cCCcHHHHHHHHHHHHH
Confidence 874 12 34568899999876 45566888888888764
No 246
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.27 E-value=99 Score=24.58 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393 129 CADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 129 aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~ 165 (408)
+++.+|.++.|.|+..+. ..++++.|++.+......
T Consensus 16 a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 16 AANPDDLDARYALADALL-AAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence 456778899999999888 788888888888777655
No 247
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=28.19 E-value=56 Score=33.43 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHcC-CCccccHHHHHHHHHHHHHcCCH
Q 015393 191 LRAGVALCARAAFLGHI-------DALRELGHCLQDG-YGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G~~-------~A~~~Lg~~y~~G-~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
+.+|++|+++|-...+| +|+..||++|... .-.+.=+.+|...+++|...++-
T Consensus 334 ~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~G 394 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNG 394 (404)
T ss_dssp HHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcccc
Confidence 57899999999987665 4777888888543 22345566777777777776553
No 248
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=27.49 E-value=1.4e+02 Score=22.05 Aligned_cols=18 Identities=17% Similarity=-0.047 Sum_probs=12.8
Q ss_pred ccCCHHHHHHHHHHHHhc
Q 015393 148 CLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~ 165 (408)
..+++++|+.+|..|++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 357778888888777653
No 249
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=1.7e+02 Score=29.19 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=69.4
Q ss_pred hccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcc
Q 015393 147 YCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--HIDALRELGHCLQDGYGVR 224 (408)
Q Consensus 147 ~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~ 224 (408)
+.+.|+..+..+.++-...|.++.+.++|-+.+. .| +++.|++=|+.|.+-| .+--.|+++.+.+. .
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-eg------qyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~ 191 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EG------QYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----S 191 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeec-cc------cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----h
Confidence 3567888888888888878889999998876643 34 7899999999998863 46678899999876 7
Q ss_pred ccHHHHHHHHHHHHHcCC
Q 015393 225 QNIAEGRRFLVQANAREL 242 (408)
Q Consensus 225 ~d~~~A~~w~~kAA~~G~ 242 (408)
++...|+++-..-.++|.
T Consensus 192 ~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 192 RQYASALKHISEIIERGI 209 (459)
T ss_pred hhHHHHHHHHHHHHHhhh
Confidence 899999999999998875
No 250
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=26.63 E-value=5.8e+02 Score=24.50 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=46.6
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-CC-H-HHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-GH-I-DAL 210 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-G~-~-~A~ 210 (408)
++.+-..+--+++ .....+-.-.+.++-...|+..+.-.|-+||.+-.| -...+.+||+..+++ |. + ...
T Consensus 148 dl~~R~A~vp~~~-EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~------HV~~G~rWf~~~c~~~~~~p~~~f 220 (253)
T PF04305_consen 148 DLLARMALVPRVL-EARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIG------HVAIGNRWFRYLCEQRGLDPWETF 220 (253)
T ss_pred CHHHHHHHHHHHH-HhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHhccccHHHHH
Confidence 5555444444333 223333344556666777888877788888866555 566777888888875 32 2 234
Q ss_pred HHHHHHHHcC
Q 015393 211 RELGHCLQDG 220 (408)
Q Consensus 211 ~~Lg~~y~~G 220 (408)
..|-..|..|
T Consensus 221 ~~lv~~~~~~ 230 (253)
T PF04305_consen 221 RELVRQYFRG 230 (253)
T ss_pred HHHHHHhCCC
Confidence 4455555444
No 251
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.43 E-value=7.2e+02 Score=25.55 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=45.4
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHhcCcHHH-HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-CCHH
Q 015393 141 LGMIRFYCLQNRGSGASLMAKAAISSHAQA-LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-GHID 208 (408)
Q Consensus 141 LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A-~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-G~~~ 208 (408)
=|++-+ .++|+.+|.....++++.+.-.. .|.+|.=-.++.| |...+-.|+.+|++. |+..
T Consensus 90 egl~~l-~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrg------d~~~an~yL~eaae~~~~~~ 152 (400)
T COG3071 90 EGLLKL-FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRG------DEDRANRYLAEAAELAGDDT 152 (400)
T ss_pred HHHHHH-hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcc------cHHHHHHHHHHHhccCCCch
Confidence 344444 58999999999999999985544 4455555556677 888999999999997 5444
No 252
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.33 E-value=1.6e+02 Score=25.40 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-----HcCCCCCCCccCHHHHHHHHHHHHh
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQ-----FNGSGGSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y-----~~G~Gv~~~~~d~~kA~~~~~kAA~ 203 (408)
..|...||.+-. +...-+.|+.||.+=-+...-+....++.++ +.|.| ..++|+..|++|.+
T Consensus 62 s~A~~~Lgry~e-~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~G------r~~eA~~~fr~agE 128 (144)
T PF12968_consen 62 SGALAGLGRYDE-CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLG------RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHTT-HHH-HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHH
T ss_pred HHHHHhhccHHH-HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHH
Confidence 344445554333 3345556777777766666555555555555 34566 56788888888765
No 253
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=26.10 E-value=44 Score=24.96 Aligned_cols=13 Identities=38% Similarity=0.991 Sum_probs=10.3
Q ss_pred ccCChhHHHhhch
Q 015393 355 NYCSRACQALDWK 367 (408)
Q Consensus 355 ~YCs~~cQ~~dW~ 367 (408)
-.||+.|+..|-.
T Consensus 26 PFCS~RCk~IDLg 38 (62)
T PRK00418 26 PFCSKRCQLIDLG 38 (62)
T ss_pred CcccHHHHhhhHH
Confidence 4799999998843
No 254
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=4.6e+02 Score=27.42 Aligned_cols=99 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred cCCHHHHHHhH-HHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-CCH
Q 015393 132 AGNVEACYTLG-MIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-GHI 207 (408)
Q Consensus 132 ~G~~~A~~~LG-~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-G~~ 207 (408)
..++.+.-.+| .+.+..+.-.++|..+|+++... |+..|-..++.+... .| -.+.++.+++++... -+.
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-Eg------~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV-EG------PTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-hC------ccchHHHHHHHHHhhcccc
Q ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.-...||.++.. ...+++|..+|.+|....
T Consensus 472 ~LH~~Lgd~~~A----~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 472 NLHNHLGDIMRA----QNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHHhcC
No 255
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=25.73 E-value=5.4e+02 Score=24.69 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccc
Q 015393 151 NRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQN 226 (408)
Q Consensus 151 d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d 226 (408)
..+.|...|++|-+.+ +..-+...|.|-..-.+ |.+.|...|+++... .++.-......++.. -.|
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~------d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d 85 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK------DPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LND 85 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCc
Confidence 4788999999998765 35566677777433222 777899999999986 333333333333322 358
Q ss_pred HHHHHHHHHHHHHc
Q 015393 227 IAEGRRFLVQANAR 240 (408)
Q Consensus 227 ~~~A~~w~~kAA~~ 240 (408)
...++.+|+++...
T Consensus 86 ~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 86 INNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999999764
No 256
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.63 E-value=72 Score=35.39 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC--CCCCCccCHHHHHHHHHHHHh
Q 015393 130 ADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGS--GGSKNDKDLRAGVALCARAAF 203 (408)
Q Consensus 130 Ae~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~--Gv~~~~~d~~kA~~~~~kAA~ 203 (408)
++.+|..-.|..++-...-++|.++|+.-...+.+.. .++-+...|.+|.+-. ..-.+......|++||+||-+
T Consensus 237 ve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 237 VETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred hccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 3444444444444333344566777776666666542 2333344456664321 000112245567777777655
No 257
>PF13013 F-box-like_2: F-box-like domain
Probab=25.31 E-value=1.1e+02 Score=25.59 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=26.6
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHh
Q 015393 57 LFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGL 96 (408)
Q Consensus 57 ~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~ 96 (408)
.+.+||+||+..|+.... +.++.....+|+.+...
T Consensus 21 tl~DLP~ELl~~I~~~C~-----~~~l~~l~~~~~~~r~~ 55 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-----DPILLALSRTCRAYRSW 55 (109)
T ss_pred chhhChHHHHHHHHhhcC-----cHHHHHHHHHHHHHHHH
Confidence 478899999999998764 45777777777755544
No 258
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.22 E-value=1.5e+02 Score=22.90 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=13.8
Q ss_pred ccCCHHHHHHHHHHHHhc
Q 015393 148 CLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~ 165 (408)
..+++++|+.||..|++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 467888888888887754
No 259
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.62 E-value=1.6e+02 Score=28.83 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=35.8
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhh
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSK 105 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~ 105 (408)
.-.|.+||.+++.+|+-.+++. .|++.+.-.-..+..+.++..++..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh----~dL~s~aqa~etl~~l~~e~~iWkk 245 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDH----RDLESLAQAWETLAKLSEERRIWKK 245 (332)
T ss_pred CCCcccchHHHHHHHHHHccCc----chHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4469999999999999999975 5888877777777666665554443
No 260
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.22 E-value=22 Score=25.11 Aligned_cols=31 Identities=35% Similarity=0.891 Sum_probs=17.6
Q ss_pred CcCcCCCCCCCccccccccCCccCC-ccccCChhHHH
Q 015393 328 RLCSHVGCGRPETRRHEFRRCSVCG-AVNYCSRACQA 363 (408)
Q Consensus 328 ~~C~~~~C~~~~~~~~~~~~C~~C~-~~~YCs~~cQ~ 363 (408)
..|. -|+++.+-..+ -.+|- .|.|||..|.+
T Consensus 13 KICp--vCqRPFsWRkK---W~~cWDeVKyCSeRCrr 44 (54)
T COG4338 13 KICP--VCQRPFSWRKK---WARCWDEVKYCSERCRR 44 (54)
T ss_pred hhhh--hhcCchHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3555 56666553222 23332 58899988873
No 261
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=23.00 E-value=2.5e+02 Score=28.14 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=44.7
Q ss_pred ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393 148 CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE 212 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~ 212 (408)
-.++.++|..+|+-|... .+++++..+|.+.+.. +|+-+|-++|-+|..- |+.+|..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-------~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-------NEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-------hhhHhhhhhhheeeeeCCCchHHHhh
Confidence 368888999999988766 5899999999888643 2777888899888653 67776654
No 262
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=22.59 E-value=2.1e+02 Score=18.68 Aligned_cols=28 Identities=14% Similarity=0.034 Sum_probs=16.9
Q ss_pred HHHHHhHHHHhhccCCHHHHHHH--HHHHHh
Q 015393 136 EACYTLGMIRFYCLQNRGSGASL--MAKAAI 164 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~--~~kAA~ 164 (408)
+..+.+|..+. ..+++++|+++ |+-++.
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH
Confidence 44555665554 67788888888 446554
No 263
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=22.45 E-value=1.3e+02 Score=23.15 Aligned_cols=17 Identities=0% Similarity=-0.177 Sum_probs=12.2
Q ss_pred cCCHHHHHHHHHHHHhc
Q 015393 149 LQNRGSGASLMAKAAIS 165 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~ 165 (408)
.+++++|+.+|..|.+.
T Consensus 19 ~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 19 EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 36777888888877653
No 264
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.94 E-value=1.1e+03 Score=25.96 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 149 LQNRGSGASLMAK--AAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 149 ~~d~~~A~~~~~k--AA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
.+|.+....|+.. ...+....++|.+|..+.. .| +..+|..+|++++..
T Consensus 325 ~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g------~~~~A~~~~~~~a~~ 375 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QG------RKAEAEEILRQLMQQ 375 (644)
T ss_pred ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cC------CHHHHHHHHHHHhcC
Confidence 3455555555544 1223456667777776554 44 555666667776654
No 265
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=21.82 E-value=89 Score=24.12 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCcCcCCCCCCCccc---cccccCCccCCc---------cccCChhHHHh
Q 015393 327 LRLCSHVGCGRPETR---RHEFRRCSVCGA---------VNYCSRACQAL 364 (408)
Q Consensus 327 ~~~C~~~~C~~~~~~---~~~~~~C~~C~~---------~~YCs~~cQ~~ 364 (408)
...|.++.|.+.... ..++++...=+. ..|||..|-+.
T Consensus 20 ~~~CGYplC~~~~~~~~~~~~y~i~~~~~~v~~~~~~~~~~fCS~~C~~~ 69 (79)
T PF04181_consen 20 NGLCGYPLCSNPPPKISSRQKYRIDLKANKVYDITERELSKFCSKDCYKA 69 (79)
T ss_pred CCCCCCccCCCCcccccCCCCeEEECCCCeecccccChhcCcCCHHHHHH
Confidence 368888888887652 345555554322 28999999754
No 266
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.57 E-value=69 Score=23.68 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=14.2
Q ss_pred cccCChhHHHhhchhhhhh
Q 015393 354 VNYCSRACQALDWKLRHKA 372 (408)
Q Consensus 354 ~~YCs~~cQ~~dW~~~Hk~ 372 (408)
-.|||.+|+..-++ .+|.
T Consensus 17 ~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 17 ESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred hhhhCHHHHHHHHH-HHHH
Confidence 56999999998887 3554
No 267
>PRK14700 recombination factor protein RarA; Provisional
Probab=20.46 E-value=8.4e+02 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCcHH-HHHHHHHHHHcCC
Q 015393 152 RGSGASLMAKAAISSHAQ-ALYSLAVIQFNGS 182 (408)
Q Consensus 152 ~~~A~~~~~kAA~~G~~~-A~~~Lg~~y~~G~ 182 (408)
.-.-+.-|.|+....+++ |.|.|+.|...|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GE 157 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGV 157 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCC
Confidence 334566677777777766 5777888777663
No 268
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.03 E-value=52 Score=28.92 Aligned_cols=37 Identities=27% Similarity=0.648 Sum_probs=26.5
Q ss_pred CCCCCCCCCcCcCCCCCCCccccccccCCccCCcccc
Q 015393 320 GGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNY 356 (408)
Q Consensus 320 ~~~~~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~Y 356 (408)
+...+++.-.|.+|+-.........+..|..|+...|
T Consensus 105 GE~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 105 GEVVGPGTLVCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred CcEecCceEecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 3446788999996554444446678999999987654
Done!