Query 015393
Match_columns 408
No_of_seqs 447 out of 2626
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1klx_A Cysteine rich protein B 99.9 7.1E-25 2.4E-29 188.8 16.7 126 118-249 10-135 (138)
2 3rjv_A Putative SEL1 repeat pr 99.9 5.7E-22 1.9E-26 181.9 18.4 129 118-249 68-206 (212)
3 3rjv_A Putative SEL1 repeat pr 99.9 8.6E-22 2.9E-26 180.7 18.8 130 117-249 32-168 (212)
4 3e4b_A ALGK; tetratricopeptide 99.9 8.8E-22 3E-26 201.3 17.0 181 117-320 231-423 (452)
5 3e4b_A ALGK; tetratricopeptide 99.9 4E-21 1.4E-25 196.4 18.3 130 116-249 264-396 (452)
6 2xm6_A Protein corresponding t 99.8 1.6E-18 5.6E-23 177.4 19.2 130 117-249 93-225 (490)
7 2xm6_A Protein corresponding t 99.8 3E-18 1E-22 175.5 20.7 131 116-249 128-261 (490)
8 1klx_A Cysteine rich protein B 99.8 2.7E-18 9.1E-23 147.5 16.6 129 79-216 7-138 (138)
9 1ouv_A Conserved hypothetical 99.7 3.9E-16 1.3E-20 146.3 18.8 131 116-249 127-260 (273)
10 1ouv_A Conserved hypothetical 99.7 1.3E-15 4.5E-20 142.7 20.7 129 117-248 56-187 (273)
11 2d8q_A BLU protein, zinc finge 98.9 1.5E-09 5.2E-14 82.3 4.9 47 325-379 13-59 (70)
12 2od1_A Protein CBFA2T1; zinc f 98.8 1.8E-09 6.1E-14 79.4 3.0 46 325-378 11-56 (60)
13 2dj8_A Protein CBFA2T1; zinc f 98.8 1.8E-09 6.3E-14 79.4 2.9 46 325-378 13-58 (60)
14 2odd_A Protein CBFA2T1; MYND z 98.8 2.4E-09 8.1E-14 79.8 2.8 46 325-378 15-60 (64)
15 2jw6_A Deformed epidermal auto 98.8 3.3E-09 1.1E-13 75.6 3.1 43 326-376 8-50 (52)
16 4gyw_A UDP-N-acetylglucosamine 98.6 4.6E-07 1.6E-11 97.8 16.7 110 118-239 58-173 (723)
17 4gco_A Protein STI-1; structur 98.6 6.8E-07 2.3E-11 74.4 12.9 102 134-247 12-119 (126)
18 3gyz_A Chaperone protein IPGC; 98.6 3.9E-07 1.3E-11 79.0 11.5 98 133-242 34-135 (151)
19 4ga2_A E3 SUMO-protein ligase 98.6 2.8E-07 9.6E-12 78.9 9.7 116 119-246 13-137 (150)
20 2pl2_A Hypothetical conserved 98.5 1.7E-06 5.7E-11 78.4 13.9 113 116-240 52-180 (217)
21 2pl2_A Hypothetical conserved 98.5 2.3E-06 7.7E-11 77.5 14.3 111 119-240 21-147 (217)
22 4gcn_A Protein STI-1; structur 98.5 1.3E-06 4.6E-11 72.5 11.4 94 135-240 8-112 (127)
23 1hh8_A P67PHOX, NCF-2, neutrop 98.4 3.4E-06 1.2E-10 74.7 13.7 113 117-242 20-152 (213)
24 2vgx_A Chaperone SYCD; alterna 98.4 2.2E-06 7.7E-11 73.2 11.8 96 133-240 19-118 (148)
25 4gyw_A UDP-N-acetylglucosamine 98.4 2.4E-06 8.3E-11 92.2 14.5 120 116-247 22-149 (723)
26 2xcb_A PCRH, regulatory protei 98.4 2.6E-06 9E-11 71.6 11.8 95 134-240 17-115 (142)
27 3vtx_A MAMA; tetratricopeptide 98.4 2.8E-05 9.4E-10 67.3 18.6 117 117-245 53-175 (184)
28 3sz7_A HSC70 cochaperone (SGT) 98.4 3.2E-06 1.1E-10 72.5 12.2 95 134-240 10-108 (164)
29 4i17_A Hypothetical protein; T 98.4 1.2E-05 4.1E-10 72.3 16.5 115 117-243 21-149 (228)
30 4gco_A Protein STI-1; structur 98.4 6.1E-06 2.1E-10 68.5 13.4 94 116-217 26-125 (126)
31 3upv_A Heat shock protein STI1 98.4 5.8E-06 2E-10 67.4 12.9 95 135-241 4-102 (126)
32 3vtx_A MAMA; tetratricopeptide 98.3 1.7E-05 5.9E-10 68.6 16.1 113 117-241 19-137 (184)
33 2e2e_A Formate-dependent nitri 98.3 2.4E-06 8.2E-11 73.9 10.1 112 119-242 26-146 (177)
34 2fo7_A Synthetic consensus TPR 98.3 3.9E-05 1.3E-09 61.2 16.1 111 118-240 16-132 (136)
35 3q49_B STIP1 homology and U bo 98.3 1.1E-05 3.9E-10 66.0 13.0 97 132-240 6-106 (137)
36 1xnf_A Lipoprotein NLPI; TPR, 98.3 8.1E-06 2.8E-10 74.6 13.0 109 118-239 58-172 (275)
37 3qky_A Outer membrane assembly 98.3 1.5E-05 5.1E-10 73.5 14.3 119 117-240 29-177 (261)
38 3as5_A MAMA; tetratricopeptide 98.2 4.2E-05 1.4E-09 64.8 16.0 113 116-240 55-173 (186)
39 3urz_A Uncharacterized protein 98.2 9.5E-06 3.2E-10 72.9 11.8 93 118-218 19-133 (208)
40 2lni_A Stress-induced-phosphop 98.2 1.5E-05 5.2E-10 64.2 12.0 95 134-240 15-113 (133)
41 2kck_A TPR repeat; tetratricop 98.2 1E-05 3.6E-10 63.0 10.3 97 133-241 4-107 (112)
42 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4E-10 66.2 10.9 91 138-240 20-114 (121)
43 2vq2_A PILW, putative fimbrial 98.2 8.7E-05 3E-09 65.1 17.1 113 116-240 55-176 (225)
44 2vq2_A PILW, putative fimbrial 98.2 6.2E-05 2.1E-09 66.1 15.9 111 119-240 24-142 (225)
45 4abn_A Tetratricopeptide repea 98.2 1.1E-05 3.7E-10 82.3 12.3 123 116-240 116-250 (474)
46 4eqf_A PEX5-related protein; a 98.2 2.2E-05 7.5E-10 75.5 13.9 110 119-240 193-310 (365)
47 2ho1_A Type 4 fimbrial biogene 98.2 4.8E-05 1.6E-09 68.8 15.3 114 116-241 84-205 (252)
48 3rkv_A Putative peptidylprolyl 98.2 1.8E-05 6.3E-10 67.5 11.8 95 135-241 11-127 (162)
49 4i17_A Hypothetical protein; T 98.2 2.4E-05 8.2E-10 70.3 13.1 100 130-241 2-106 (228)
50 2dba_A Smooth muscle cell asso 98.1 3.6E-05 1.2E-09 63.3 13.2 96 133-240 26-128 (148)
51 1elw_A TPR1-domain of HOP; HOP 98.1 3.8E-05 1.3E-09 60.1 12.1 94 135-240 4-101 (118)
52 2xev_A YBGF; tetratricopeptide 98.1 2E-05 7E-10 63.7 10.7 93 136-240 3-105 (129)
53 1elr_A TPR2A-domain of HOP; HO 98.1 2.2E-05 7.6E-10 62.8 10.7 95 135-241 4-109 (131)
54 3uq3_A Heat shock protein STI1 98.1 6.3E-05 2.1E-09 67.6 14.8 96 134-241 138-237 (258)
55 2ho1_A Type 4 fimbrial biogene 98.1 4.8E-05 1.6E-09 68.8 14.0 111 119-241 53-171 (252)
56 1qqe_A Vesicular transport pro 98.1 2.7E-05 9.3E-10 73.6 12.7 111 119-240 53-187 (292)
57 2h6f_A Protein farnesyltransfe 98.1 1.5E-05 5.1E-10 79.5 11.2 115 119-241 148-270 (382)
58 3edt_B KLC 2, kinesin light ch 98.1 5.4E-05 1.8E-09 68.7 14.2 113 116-240 98-281 (283)
59 4abn_A Tetratricopeptide repea 98.1 1.9E-05 6.4E-10 80.5 12.1 118 116-240 150-287 (474)
60 4ga2_A E3 SUMO-protein ligase 98.1 4.2E-06 1.4E-10 71.4 6.2 97 140-248 2-104 (150)
61 2vsy_A XCC0866; transferase, g 98.1 2.3E-05 7.8E-10 81.2 12.9 118 116-242 36-159 (568)
62 2vsy_A XCC0866; transferase, g 98.1 5.3E-05 1.8E-09 78.4 15.6 92 116-214 70-169 (568)
63 2q7f_A YRRB protein; TPR, prot 98.1 5.4E-05 1.8E-09 67.6 13.6 113 116-240 104-222 (243)
64 1a17_A Serine/threonine protei 98.1 0.00013 4.3E-09 61.2 15.2 111 117-239 27-145 (166)
65 3u4t_A TPR repeat-containing p 98.1 6.3E-05 2.1E-09 68.7 14.3 113 116-241 50-172 (272)
66 2q7f_A YRRB protein; TPR, prot 98.1 9.6E-05 3.3E-09 66.0 15.2 114 116-241 70-189 (243)
67 3ulq_A Response regulator aspa 98.1 5.7E-05 1.9E-09 73.6 14.6 113 116-240 156-293 (383)
68 1na0_A Designed protein CTPR3; 98.1 7.6E-05 2.6E-09 58.9 12.8 94 135-240 9-106 (125)
69 2pzi_A Probable serine/threoni 98.1 1.3E-05 4.4E-10 85.7 10.7 114 116-242 446-565 (681)
70 3hym_B Cell division cycle pro 98.0 0.0001 3.5E-09 68.8 15.7 110 119-240 175-299 (330)
71 1a17_A Serine/threonine protei 98.0 6.7E-05 2.3E-09 62.9 12.8 96 134-241 12-111 (166)
72 3uq3_A Heat shock protein STI1 98.0 0.00014 4.8E-09 65.2 15.6 114 116-241 51-203 (258)
73 2vyi_A SGTA protein; chaperone 98.0 7.1E-05 2.4E-09 59.6 12.3 94 135-240 12-109 (131)
74 1fch_A Peroxisomal targeting s 98.0 8.5E-05 2.9E-09 70.8 14.9 110 119-240 197-314 (368)
75 2ifu_A Gamma-SNAP; membrane fu 98.0 1.7E-05 5.9E-10 75.6 10.0 109 118-239 51-183 (307)
76 3edt_B KLC 2, kinesin light ch 98.0 5.1E-05 1.7E-09 68.9 12.6 112 117-240 57-198 (283)
77 3qww_A SET and MYND domain-con 98.0 2E-06 6.7E-11 87.5 3.3 48 327-380 49-96 (433)
78 3as5_A MAMA; tetratricopeptide 98.0 6.4E-05 2.2E-09 63.6 12.4 112 118-241 23-140 (186)
79 3gyz_A Chaperone protein IPGC; 98.0 6.6E-05 2.3E-09 64.7 12.5 84 115-206 48-135 (151)
80 3qwp_A SET and MYND domain-con 98.0 2.2E-06 7.6E-11 86.9 3.1 50 326-381 46-95 (429)
81 3u4t_A TPR repeat-containing p 98.0 6.9E-05 2.4E-09 68.4 12.8 113 116-240 16-137 (272)
82 3nf1_A KLC 1, kinesin light ch 98.0 0.00011 3.7E-09 68.0 14.1 113 116-240 124-307 (311)
83 2c2l_A CHIP, carboxy terminus 98.0 8.1E-05 2.8E-09 70.2 13.4 96 133-240 2-101 (281)
84 3ulq_A Response regulator aspa 98.0 4.8E-05 1.6E-09 74.1 12.1 112 116-239 116-252 (383)
85 3urz_A Uncharacterized protein 98.0 7.7E-05 2.6E-09 66.8 12.4 102 134-247 3-126 (208)
86 2fbn_A 70 kDa peptidylprolyl i 97.9 8.2E-05 2.8E-09 65.6 12.2 94 135-240 38-151 (198)
87 1w3b_A UDP-N-acetylglucosamine 97.9 0.00019 6.4E-09 69.6 15.9 108 120-239 254-367 (388)
88 4eqf_A PEX5-related protein; a 97.9 0.0002 6.9E-09 68.6 16.0 112 118-241 114-243 (365)
89 3u3w_A Transcriptional activat 97.9 0.00012 4.2E-09 68.8 14.2 111 118-239 130-265 (293)
90 2lni_A Stress-induced-phosphop 97.9 0.00011 3.7E-09 59.0 11.9 92 119-218 32-129 (133)
91 3hym_B Cell division cycle pro 97.9 0.00019 6.5E-09 66.9 15.3 110 119-240 141-265 (330)
92 3cv0_A Peroxisome targeting si 97.9 0.00019 6.5E-09 66.8 15.2 110 119-240 154-269 (327)
93 1hh8_A P67PHOX, NCF-2, neutrop 97.9 5.4E-05 1.8E-09 66.8 10.7 93 135-240 6-100 (213)
94 1p5q_A FKBP52, FK506-binding p 97.9 0.00016 5.4E-09 70.2 14.7 111 117-239 161-293 (336)
95 1na3_A Designed protein CTPR2; 97.9 7.5E-05 2.6E-09 56.3 9.9 77 134-218 8-88 (91)
96 3gw4_A Uncharacterized protein 97.9 0.00017 5.9E-09 62.6 13.6 110 118-239 41-175 (203)
97 2h6f_A Protein farnesyltransfe 97.9 5.6E-05 1.9E-09 75.3 11.5 111 118-240 112-229 (382)
98 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00012 4.3E-09 62.4 12.1 93 117-217 25-123 (164)
99 3upv_A Heat shock protein STI1 97.9 0.00018 6.3E-09 58.2 12.6 93 117-217 18-122 (126)
100 1xnf_A Lipoprotein NLPI; TPR, 97.9 0.00054 1.9E-08 62.2 17.1 111 119-241 21-141 (275)
101 3n71_A Histone lysine methyltr 97.9 4.6E-06 1.6E-10 86.0 3.4 48 327-380 49-96 (490)
102 3ro3_A PINS homolog, G-protein 97.9 0.00014 4.9E-09 59.7 12.0 110 118-239 24-157 (164)
103 1p5q_A FKBP52, FK506-binding p 97.9 8E-05 2.7E-09 72.3 12.0 108 122-241 132-260 (336)
104 1na0_A Designed protein CTPR3; 97.9 0.00036 1.2E-08 54.8 13.9 94 117-218 23-122 (125)
105 3nf1_A KLC 1, kinesin light ch 97.9 0.00028 9.6E-09 65.1 15.0 113 116-240 82-224 (311)
106 1elw_A TPR1-domain of HOP; HOP 97.9 0.00048 1.6E-08 53.6 14.3 94 117-218 18-117 (118)
107 2qfc_A PLCR protein; TPR, HTH, 97.9 0.00014 4.8E-09 68.4 12.9 111 117-239 129-265 (293)
108 1fch_A Peroxisomal targeting s 97.8 0.00054 1.9E-08 65.2 17.0 117 118-240 79-246 (368)
109 1w3b_A UDP-N-acetylglucosamine 97.8 0.00034 1.2E-08 67.7 15.8 93 135-239 203-299 (388)
110 2vyi_A SGTA protein; chaperone 97.8 0.00047 1.6E-08 54.6 13.9 95 117-219 26-126 (131)
111 3mkr_A Coatomer subunit epsilo 97.8 0.00056 1.9E-08 64.8 16.5 120 115-248 113-239 (291)
112 3q15_A PSP28, response regulat 97.8 0.00013 4.4E-09 71.1 12.1 112 116-239 114-250 (378)
113 3q15_A PSP28, response regulat 97.8 0.00015 5.1E-09 70.6 12.4 113 116-240 154-290 (378)
114 2fo7_A Synthetic consensus TPR 97.8 0.00027 9.3E-09 56.0 11.9 94 136-241 2-99 (136)
115 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.3E-09 71.6 12.3 95 135-241 223-337 (370)
116 1qqe_A Vesicular transport pro 97.8 0.00027 9.2E-09 66.7 13.5 113 116-240 90-228 (292)
117 3ma5_A Tetratricopeptide repea 97.8 0.00016 5.6E-09 56.9 10.1 81 131-219 3-89 (100)
118 2r5s_A Uncharacterized protein 97.8 8.8E-05 3E-09 64.3 9.3 114 117-241 20-138 (176)
119 2hr2_A Hypothetical protein; a 97.8 0.00013 4.6E-09 63.8 10.3 95 134-240 10-131 (159)
120 3qky_A Outer membrane assembly 97.8 0.00013 4.3E-09 67.1 10.8 102 131-240 11-126 (261)
121 2vgx_A Chaperone SYCD; alterna 97.8 0.00027 9.3E-09 60.0 12.1 81 116-204 34-118 (148)
122 2ifu_A Gamma-SNAP; membrane fu 97.8 0.00021 7.1E-09 68.0 12.4 108 118-238 91-222 (307)
123 2xcb_A PCRH, regulatory protei 97.8 0.00033 1.1E-08 58.4 12.1 80 117-204 32-115 (142)
124 3k9i_A BH0479 protein; putativ 97.7 5.5E-05 1.9E-09 61.1 6.9 76 120-203 7-89 (117)
125 2dba_A Smooth muscle cell asso 97.7 0.00054 1.8E-08 56.0 12.9 94 118-219 43-145 (148)
126 1elr_A TPR2A-domain of HOP; HO 97.7 0.00057 2E-08 54.2 12.6 94 117-218 18-123 (131)
127 4g1t_A Interferon-induced prot 97.7 4.9E-05 1.7E-09 75.6 7.4 114 119-243 316-462 (472)
128 4gcn_A Protein STI-1; structur 97.7 0.00051 1.8E-08 56.5 12.6 89 117-213 22-122 (127)
129 3fp2_A TPR repeat-containing p 97.7 0.00089 3E-08 67.2 16.7 111 118-240 291-407 (537)
130 2l6j_A TPR repeat-containing p 97.7 0.00032 1.1E-08 54.7 10.7 77 134-218 3-89 (111)
131 2yhc_A BAMD, UPF0169 lipoprote 97.7 0.00049 1.7E-08 62.1 13.3 120 117-241 18-177 (225)
132 4a1s_A PINS, partner of inscut 97.7 0.00025 8.7E-09 68.8 12.1 112 116-239 61-211 (411)
133 4f3v_A ESX-1 secretion system 97.7 0.00016 5.3E-09 69.2 10.2 114 115-241 114-238 (282)
134 2pzi_A Probable serine/threoni 97.7 8.8E-05 3E-09 79.1 9.5 117 117-246 405-537 (681)
135 2xpi_A Anaphase-promoting comp 97.7 0.0016 5.6E-08 66.4 18.7 111 118-240 456-579 (597)
136 2gw1_A Mitochondrial precursor 97.7 0.0003 1E-08 70.0 12.7 112 119-241 354-479 (514)
137 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00024 8.1E-09 72.1 12.0 97 133-241 266-381 (457)
138 3mkr_A Coatomer subunit epsilo 97.7 0.0014 4.8E-08 62.1 16.7 114 116-240 78-195 (291)
139 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00055 1.9E-08 60.2 12.9 95 117-219 52-168 (198)
140 2qfc_A PLCR protein; TPR, HTH, 97.7 0.002 6.9E-08 60.3 17.5 112 117-240 89-225 (293)
141 2gw1_A Mitochondrial precursor 97.7 0.0013 4.3E-08 65.4 16.7 115 117-242 53-268 (514)
142 2y4t_A DNAJ homolog subfamily 97.6 0.0012 4E-08 64.8 16.3 112 118-241 41-173 (450)
143 2kat_A Uncharacterized protein 97.6 0.00051 1.8E-08 54.7 11.2 89 121-217 3-99 (115)
144 3rkv_A Putative peptidylprolyl 97.6 0.0006 2E-08 57.9 12.3 93 117-217 25-142 (162)
145 4a1s_A PINS, partner of inscut 97.6 0.00063 2.2E-08 66.0 13.9 118 116-245 236-377 (411)
146 3gw4_A Uncharacterized protein 97.6 0.00027 9.2E-09 61.4 10.0 95 133-239 24-135 (203)
147 1hxi_A PEX5, peroxisome target 97.6 0.00033 1.1E-08 57.3 9.9 80 117-204 31-114 (121)
148 3u3w_A Transcriptional activat 97.6 0.00089 3.1E-08 62.8 14.2 111 117-239 89-224 (293)
149 3ieg_A DNAJ homolog subfamily 97.6 0.00099 3.4E-08 62.4 14.4 113 117-241 17-150 (359)
150 3ieg_A DNAJ homolog subfamily 97.6 0.0021 7.2E-08 60.2 16.7 112 117-240 85-217 (359)
151 3k9i_A BH0479 protein; putativ 97.6 0.00014 4.8E-09 58.6 7.3 81 149-240 3-90 (117)
152 2xev_A YBGF; tetratricopeptide 97.6 0.0016 5.5E-08 52.2 13.2 91 117-215 16-118 (129)
153 2xpi_A Anaphase-promoting comp 97.5 0.0024 8.3E-08 65.1 17.6 110 119-240 355-470 (597)
154 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00036 1.2E-08 67.7 10.6 95 134-240 178-293 (338)
155 1wao_1 Serine/threonine protei 97.5 0.0002 6.9E-09 73.1 9.2 107 117-235 20-134 (477)
156 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00026 8.8E-09 68.8 9.5 111 119-240 195-328 (338)
157 3cv0_A Peroxisome targeting si 97.5 0.0007 2.4E-08 62.8 12.2 112 116-239 185-314 (327)
158 1ihg_A Cyclophilin 40; ppiase 97.5 0.00077 2.6E-08 66.5 12.7 95 117-219 237-353 (370)
159 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0012 4.1E-08 66.8 14.1 96 116-219 281-397 (457)
160 1wao_1 Serine/threonine protei 97.5 0.0002 7E-09 73.1 8.4 95 135-241 6-104 (477)
161 3ro3_A PINS homolog, G-protein 97.5 0.0015 5.2E-08 53.4 12.3 94 135-240 9-118 (164)
162 3sf4_A G-protein-signaling mod 97.5 0.001 3.5E-08 63.8 12.8 111 117-239 23-175 (406)
163 3sf4_A G-protein-signaling mod 97.5 0.0034 1.2E-07 60.1 16.5 112 117-240 201-336 (406)
164 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00077 2.6E-08 53.8 10.0 73 134-214 4-87 (104)
165 3ro2_A PINS homolog, G-protein 97.4 0.0022 7.4E-08 59.1 14.3 111 117-239 19-171 (338)
166 4g1t_A Interferon-induced prot 97.4 0.0012 4.1E-08 65.4 13.3 114 120-240 155-276 (472)
167 3q49_B STIP1 homology and U bo 97.4 0.0018 6.1E-08 52.5 12.1 80 117-204 23-106 (137)
168 2y4t_A DNAJ homolog subfamily 97.4 0.0016 5.6E-08 63.7 14.0 114 116-241 156-287 (450)
169 2kck_A TPR repeat; tetratricop 97.4 0.0019 6.7E-08 49.6 11.7 82 116-205 19-107 (112)
170 3fp2_A TPR repeat-containing p 97.4 0.0019 6.5E-08 64.7 14.6 114 116-241 256-374 (537)
171 2r5s_A Uncharacterized protein 97.4 0.0005 1.7E-08 59.4 8.9 113 116-239 53-172 (176)
172 3qou_A Protein YBBN; thioredox 97.4 0.00064 2.2E-08 64.1 10.2 114 116-241 130-249 (287)
173 2kat_A Uncharacterized protein 97.4 0.0011 3.8E-08 52.7 10.1 76 154-240 3-82 (115)
174 3ro2_A PINS homolog, G-protein 97.4 0.0015 5.2E-08 60.2 12.4 111 118-240 198-332 (338)
175 1zu2_A Mitochondrial import re 97.3 0.00051 1.7E-08 60.0 7.6 109 119-243 18-143 (158)
176 1zu2_A Mitochondrial import re 97.3 0.00036 1.2E-08 61.0 6.6 92 150-241 16-121 (158)
177 2ond_A Cleavage stimulation fa 97.3 0.0033 1.1E-07 59.4 13.8 109 120-239 81-197 (308)
178 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.8E-08 51.4 8.3 65 165-240 4-70 (100)
179 2yhc_A BAMD, UPF0169 lipoprote 97.2 0.0021 7.3E-08 57.8 10.5 99 134-240 3-125 (225)
180 2ond_A Cleavage stimulation fa 97.1 0.0053 1.8E-07 57.9 13.3 113 117-240 113-232 (308)
181 2hr2_A Hypothetical protein; a 97.0 0.0036 1.2E-07 54.7 10.0 80 117-204 25-131 (159)
182 1na3_A Designed protein CTPR2; 97.0 0.0055 1.9E-07 45.6 9.7 62 117-179 23-88 (91)
183 1hz4_A MALT regulatory protein 96.9 0.0093 3.2E-07 57.2 13.3 112 117-240 67-203 (373)
184 1hz4_A MALT regulatory protein 96.9 0.011 3.6E-07 56.8 13.2 112 117-240 28-164 (373)
185 2c2l_A CHIP, carboxy terminus 96.9 0.0074 2.5E-07 56.6 11.6 80 117-204 18-101 (281)
186 2e2e_A Formate-dependent nitri 96.8 0.01 3.6E-07 50.5 10.8 80 118-205 59-145 (177)
187 2kc7_A BFR218_protein; tetratr 96.7 0.0033 1.1E-07 48.2 6.6 64 139-210 4-72 (99)
188 1xi4_A Clathrin heavy chain; a 96.5 0.058 2E-06 61.7 17.1 101 120-238 1093-1222(1630)
189 3qou_A Protein YBBN; thioredox 96.5 0.006 2E-07 57.3 7.8 112 116-239 164-283 (287)
190 2l6j_A TPR repeat-containing p 96.4 0.012 4.3E-07 45.3 8.3 64 167-241 3-68 (111)
191 1fs1_A SKP2 F-BOX, cyclin A/CD 96.4 0.0018 6.2E-08 45.4 2.7 44 55-103 6-49 (53)
192 2v5f_A Prolyl 4-hydroxylase su 96.2 0.023 7.8E-07 45.0 8.6 70 167-247 4-84 (104)
193 1xi4_A Clathrin heavy chain; a 95.9 0.12 4.1E-06 59.2 15.6 103 116-241 1062-1164(1630)
194 2ooe_A Cleavage stimulation fa 95.9 0.07 2.4E-06 54.1 12.8 47 190-240 406-454 (530)
195 4f3v_A ESX-1 secretion system 95.7 0.033 1.1E-06 53.0 8.9 83 113-204 146-237 (282)
196 1pc2_A Mitochondria fission pr 95.7 0.1 3.4E-06 45.0 10.9 87 121-214 16-112 (152)
197 3n71_A Histone lysine methyltr 95.6 0.16 5.4E-06 52.0 14.2 111 116-238 322-462 (490)
198 3bee_A Putative YFRE protein; 95.5 0.063 2.1E-06 41.9 8.5 67 167-242 5-74 (93)
199 2ooe_A Cleavage stimulation fa 95.3 0.19 6.4E-06 50.9 13.5 109 121-240 256-385 (530)
200 3u64_A Protein TP_0956; tetrat 95.3 0.1 3.4E-06 49.9 10.4 100 132-240 149-269 (301)
201 3bee_A Putative YFRE protein; 95.1 0.1 3.5E-06 40.7 8.6 68 132-206 3-74 (93)
202 3qww_A SET and MYND domain-con 95.1 0.096 3.3E-06 52.8 10.6 80 149-239 311-410 (433)
203 1pc2_A Mitochondria fission pr 94.8 0.17 5.8E-06 43.6 9.8 89 151-247 13-109 (152)
204 2kc7_A BFR218_protein; tetratr 94.5 0.083 2.8E-06 40.0 6.5 60 171-241 3-65 (99)
205 3qwp_A SET and MYND domain-con 93.9 0.29 1E-05 49.0 10.7 81 148-239 299-399 (429)
206 3mv2_B Coatomer subunit epsilo 93.6 0.22 7.5E-06 48.0 8.7 110 122-242 85-209 (310)
207 4b4t_Q 26S proteasome regulato 93.0 0.83 2.8E-05 44.0 12.2 110 119-240 71-204 (434)
208 3dra_A Protein farnesyltransfe 93.0 0.74 2.5E-05 44.0 11.5 110 121-240 164-287 (306)
209 3l2o_B F-box only protein 4; s 93.0 0.034 1.2E-06 53.2 1.9 49 55-108 2-50 (312)
210 1dce_A Protein (RAB geranylger 92.7 1.5 5.3E-05 45.3 14.3 116 119-240 89-221 (567)
211 3ly7_A Transcriptional activat 92.5 2.6 8.8E-05 41.5 14.8 113 119-242 215-341 (372)
212 3mv2_B Coatomer subunit epsilo 92.4 1.9 6.6E-05 41.3 13.5 120 116-249 113-261 (310)
213 3u64_A Protein TP_0956; tetrat 92.3 0.61 2.1E-05 44.5 9.5 81 119-205 179-270 (301)
214 4b4t_Q 26S proteasome regulato 91.9 1.1 3.8E-05 43.1 11.4 111 117-239 109-244 (434)
215 2e31_A FBS1, F-box only protei 90.9 0.11 3.6E-06 49.8 2.7 44 55-103 48-92 (297)
216 1dce_A Protein (RAB geranylger 90.0 3.7 0.00013 42.4 13.8 124 116-247 42-182 (567)
217 3dss_A Geranylgeranyl transfer 87.4 9.6 0.00033 36.6 13.8 123 119-241 126-268 (331)
218 1b89_A Protein (clathrin heavy 86.5 0.97 3.3E-05 45.6 6.3 69 120-209 111-179 (449)
219 3dra_A Protein farnesyltransfe 84.4 14 0.00046 35.0 13.1 118 117-240 47-175 (306)
220 1nzn_A CGI-135 protein, fissio 83.3 10 0.00035 31.3 10.1 61 135-202 35-101 (126)
221 2ovr_B FBW7, F-BOX/WD repeat p 82.8 0.63 2.2E-05 45.4 3.0 45 55-104 16-60 (445)
222 3ly7_A Transcriptional activat 82.5 4.3 0.00015 39.9 8.8 67 132-206 274-341 (372)
223 1b89_A Protein (clathrin heavy 82.3 5.1 0.00017 40.4 9.4 98 119-235 138-267 (449)
224 2yqq_A Zinc finger HIT domain- 82.2 1.1 3.8E-05 31.7 3.2 41 325-378 10-50 (56)
225 4g26_A Pentatricopeptide repea 81.6 47 0.0016 33.4 16.7 167 60-242 23-206 (501)
226 1nzn_A CGI-135 protein, fissio 80.6 15 0.00051 30.2 10.2 80 153-240 18-103 (126)
227 3dss_A Geranylgeranyl transfer 80.4 38 0.0013 32.4 14.6 121 119-245 90-229 (331)
228 3v7d_B Cell division control p 78.6 0.63 2.2E-05 45.5 1.3 45 55-104 12-57 (464)
229 3q7a_A Farnesyltransferase alp 77.5 26 0.0009 33.8 12.5 120 116-240 67-196 (349)
230 1p22_A F-BOX/WD-repeat protein 74.8 0.84 2.9E-05 44.5 1.0 46 55-105 8-57 (435)
231 2ast_B S-phase kinase-associat 74.1 1 3.5E-05 42.3 1.4 44 55-103 6-49 (336)
232 2p1m_B Transport inhibitor res 73.0 1.4 4.8E-05 44.9 2.2 37 56-96 4-40 (594)
233 1ya0_A SMG-7 transcript varian 69.7 20 0.00067 36.5 9.8 74 138-219 155-232 (497)
234 1x4s_A Protein FON, zinc finge 67.3 1.8 6.1E-05 30.9 1.0 39 327-375 11-49 (59)
235 4e6h_A MRNA 3'-END-processing 66.3 30 0.001 36.5 10.9 84 149-242 447-535 (679)
236 1ya0_A SMG-7 transcript varian 62.4 13 0.00044 37.9 6.8 68 170-248 154-225 (497)
237 3mkq_A Coatomer beta'-subunit; 61.1 79 0.0027 32.7 12.9 93 131-244 677-769 (814)
238 3q7a_A Farnesyltransferase alp 57.3 1.4E+02 0.0047 28.7 15.2 129 118-246 104-245 (349)
239 1wy6_A Hypothetical protein ST 54.5 24 0.00081 30.0 5.8 39 168-213 125-163 (172)
240 3ffl_A Anaphase-promoting comp 53.8 33 0.0011 29.6 6.9 73 137-217 65-165 (167)
241 4e6h_A MRNA 3'-END-processing 53.6 76 0.0026 33.4 11.2 112 119-240 450-570 (679)
242 4g26_A Pentatricopeptide repea 46.1 2.4E+02 0.0081 28.1 13.7 115 117-242 40-171 (501)
243 3o48_A Mitochondria fission 1 45.9 1.1E+02 0.0038 25.3 8.7 73 134-213 39-118 (134)
244 1wy6_A Hypothetical protein ST 45.1 1.1E+02 0.0037 26.0 8.4 39 135-174 125-163 (172)
245 1lv3_A Hypothetical protein YA 44.8 8.9 0.0003 28.1 1.5 15 353-367 27-41 (68)
246 1y8m_A FIS1; mitochondria, unk 42.2 1.5E+02 0.0052 24.8 9.3 73 133-212 37-116 (144)
247 3o48_A Mitochondria fission 1 38.0 97 0.0033 25.6 7.1 71 167-245 39-114 (134)
248 3ogk_B Coronatine-insensitive 35.5 9.3 0.00032 38.7 0.5 35 59-97 14-48 (592)
249 1y8m_A FIS1; mitochondria, unk 33.9 1.7E+02 0.0058 24.4 8.0 72 166-245 37-113 (144)
250 3bge_A Predicted ATPase; struc 33.7 1.1E+02 0.0038 27.1 7.1 26 191-216 63-88 (201)
251 2w2u_A Hypothetical P60 katani 25.7 82 0.0028 23.6 4.3 33 119-165 16-48 (83)
252 3ctd_A Putative ATPase, AAA fa 24.9 1.1E+02 0.0038 27.3 5.6 27 155-181 38-65 (213)
253 2v6y_A AAA family ATPase, P60 24.7 88 0.003 23.4 4.3 62 120-203 9-70 (83)
254 4a5x_A MITD1, MIT domain-conta 24.0 98 0.0034 23.3 4.5 33 119-165 13-45 (86)
255 3lpz_A GET4 (YOR164C homolog); 22.3 5.1E+02 0.017 24.6 13.2 41 192-236 119-161 (336)
256 1qsa_A Protein (soluble lytic 22.1 6.6E+02 0.023 25.8 12.6 80 119-207 268-351 (618)
257 2r9g_A AAA ATPase, central reg 21.2 1.5E+02 0.005 26.4 5.6 51 154-211 16-70 (204)
No 1
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=7.1e-25 Score=188.79 Aligned_cols=126 Identities=18% Similarity=0.113 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHH
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVAL 197 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~ 197 (408)
+.++|+.||+++++.|++.|+ ||.+|.. ..+.++|++||++|++.|++.|+++||.+|..|.|+++ |+.+|++|
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~-g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSNS-QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK---DLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTCT-TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHHc-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc---cHHHHHHH
Confidence 467999999999999999999 9999984 46677899999999999999999999999999999888 99999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 198 CARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 198 ~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
|++|++.|++.|+++||.+|..|.||++|.++|++||++|++.|++.|+...
T Consensus 84 ~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l 135 (138)
T 1klx_A 84 YSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135 (138)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
No 2
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.88 E-value=5.7e-22 Score=181.85 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCccC
Q 015393 118 WSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSH----AQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
..++|+.||+++++.|++.|+++||.+|.. +.+|+++|++||++|++.|+ +.|+++||.+|..|.|+++ |
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~---d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE---D 144 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC---C
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC---C
Confidence 567777777777777777777777777762 36777777777777777777 7777777777777777666 7
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCC--ccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 191 LRAGVALCARAAFL-GHIDALRELGHCLQDGYG--VRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 191 ~~kA~~~~~kAA~~-G~~~A~~~Lg~~y~~G~G--v~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
+.+|++||++|++. |++.|+++||.+|..|.| |++|+++|+.||++|++.|+..|....
T Consensus 145 ~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l 206 (212)
T 3rjv_A 145 DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF 206 (212)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776 777777777777777766 777777777777777777777776553
No 3
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.88 E-value=8.6e-22 Score=180.65 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
...++|+.||+++++.|++.|+++||.+|.. +++|+++|++||++|++.|++.|+++||.+|..|.|+.+ |+.+|
T Consensus 32 ~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~---d~~~A 108 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGAT---DVAHA 108 (212)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSC---CHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc---CHHHH
Confidence 4678999999999999999999999999994 345999999999999999999999999999999999887 99999
Q ss_pred HHHHHHHHhCCC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc-CCHHHHhhh
Q 015393 195 VALCARAAFLGH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR-ELAAVLSSA 249 (408)
Q Consensus 195 ~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~-G~~~A~~~~ 249 (408)
++||++|++.|+ +.|+++||.+|..|.||++|.++|+.||++|++. |++.|+...
T Consensus 109 ~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 109 ITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999 9999999999999999999999999999999998 888886653
No 4
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=8.8e-22 Score=201.25 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHh--hccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRF--YCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~--~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
...++|+.||++++ .|++.|+++||.+|+ ...+|+++|++||++|++.|++.|+++||.+|..|.|+++ |+.+|
T Consensus 231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~---d~~~A 306 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPA---DAKAA 306 (452)
T ss_dssp CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHHH
T ss_pred CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC---CHHHH
Confidence 56788888998888 889999999998855 4678888999999999988999999999999888888777 88899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh-----hccCccccc--cccc---CC
Q 015393 195 VALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA-----ACQGISTRS--WLTW---NP 264 (408)
Q Consensus 195 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~-----~~~~~~~~~--~~~~---~~ 264 (408)
++||++|+ .|++.|+++||.+|..|.||++|.++|+.||++|++.|++.|+... .|.|+.++. ...| ..
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 99999988 8889999999999988888888999999999999988888876653 344444442 2222 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhcCCCCCCCCchhhHHHHHHHHhcC
Q 015393 265 LSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARG 320 (408)
Q Consensus 265 ~~~~~~~~~~rk~~~~~~l~~~~~~~~lLs~~~~~lp~~e~~~A~~fmkewf~~~~ 320 (408)
..+ ...+...|..+...+++.+...+..++..|...++
T Consensus 386 ~~g------------------~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 386 AQD------------------TPEANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp TTC------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HCC------------------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 111 11234466777778888888899999999988764
No 5
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=4e-21 Score=196.36 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
....++|+.||+++++.|++.|+++||.+|.. +++|+++|++||++|+ .|++.|+++||.+|..|.|+++ |+.
T Consensus 264 ~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~---d~~ 339 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKV---YPQ 339 (452)
T ss_dssp GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSC---CHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCc---CHH
Confidence 45689999999999999999999999999984 4679999999999999 9999999999999999999888 999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
+|++||++|++.|++.|+++||.+|..|.||++|..+|+.||++|+++|+..|....
T Consensus 340 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l 396 (452)
T 3e4b_A 340 KALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA 396 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986653
No 6
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.6e-18 Score=177.44 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
...++|+.||+++++.|++.|+++||.+|.. +.+|+++|+.||++|++.|++.|+++||.+|..|.|+++ |+++
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---d~~~ 169 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTR---DYVM 169 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC---CHHH
Confidence 3456666666666666666666666666663 256666666666666666666666666666666666555 6666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 194 GVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 194 A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
|++||++|++.|++.+++.||.+|..|.|+++|.++|+.||++|++.|++.+....
T Consensus 170 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 225 (490)
T 2xm6_A 170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHL 225 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666665543
No 7
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=3e-18 Score=175.46 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
....++|+.||+++++.|++.|+++||.+|.. +.+|+++|++||++|++.|++.|+++||.+|..|.|+.+ |++
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---~~~ 204 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER---NDA 204 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc---CHH
Confidence 34566777777777777777777777777763 367777777777777777777777777777777777666 777
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
+|++||++|++.|++.+++.||.+|..|.|+.+|.++|+.||++|++.|++.+....
T Consensus 205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777766553
No 8
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=2.7e-18 Score=147.48 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=101.8
Q ss_pred ChHhHHHHHHHHHHHHHhhcCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHH
Q 015393 79 CPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSG 155 (408)
Q Consensus 79 sp~d~~~a~l~ck~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A 155 (408)
.+.|+..+....++..+.+..... ...+ .......++|+.||++|++.|++.|+++||.+|.. +++|+++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~-----lg~~-y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC-----LSLV-SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH-----HHHH-TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh-----HHHH-HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 445666655555544444422211 1111 12223456699999999999999999999999994 48999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 015393 156 ASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 216 (408)
Q Consensus 156 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~ 216 (408)
++||++|++.|++.|+++||.+|..|.||++ |+++|++||++|+++|++.|+++|+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~~~~Aa~~g~~~A~~~l~~l 138 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVK---NEKQAVKTFEKACRLGSEDACGILNNY 138 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTTCHHHHHHC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCc---CHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence 9999999999999999999999999999888 999999999999999999999999864
No 9
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=3.9e-16 Score=146.30 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=106.1
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
....++|+.+|+++++.+++.++++||.+|.. ..+++++|+.||++|++.+++.++++||.+|..|.|+.. |++
T Consensus 127 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~---~~~ 203 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK---NFK 203 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC---CHH
T ss_pred ccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc---cHH
Confidence 44567888888888888888888888888873 367888888888888888888888888888888877665 888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393 193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA 249 (408)
Q Consensus 193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~ 249 (408)
+|+.||++|++.|++.+++.||.+|..|.|+.+|.++|+.||++|++.|+..+....
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888776664
No 10
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.3e-15 Score=142.71 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
...++|+.+|+++++.+++.++++||.+|.. +.+|+++|+.||++|++.+++.++++||.+|..|.|+.. |+++
T Consensus 56 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~---~~~~ 132 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR---DFKK 132 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCccc---CHHH
Confidence 3455666666666666666666666666652 256666666666666666666666666666666655444 6666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393 194 GVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS 248 (408)
Q Consensus 194 A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~ 248 (408)
|++||++|++.+++.++++||.+|..|.|+.+|.++|+.||++|++.+++.+...
T Consensus 133 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 187 (273)
T 1ouv_A 133 AVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFN 187 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666666666666666666666666666666666666666666666555433
No 11
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=98.88 E-value=1.5e-09 Score=82.27 Aligned_cols=47 Identities=34% Similarity=0.777 Sum_probs=39.5
Q ss_pred CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhh
Q 015393 325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAER 379 (408)
Q Consensus 325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~ 379 (408)
+..+.|. .|++. .+++|++|+.++|||++||+.||+. ||.+|.++..
T Consensus 13 ~~~~~C~--~C~~~-----~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~~ 59 (70)
T 2d8q_A 13 PERPRCA--YCSAE-----ASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQ 59 (70)
T ss_dssp CCCCBCS--SSCCB-----CCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCCC
T ss_pred CCCCcCC--CCCCc-----ccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHHH
Confidence 3457898 66664 3699999999999999999999995 9999997653
No 12
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=79.44 Aligned_cols=46 Identities=33% Similarity=0.799 Sum_probs=38.4
Q ss_pred CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393 325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE 378 (408)
Q Consensus 325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~ 378 (408)
.....|. .|++. .+++|++|+.++|||++||+.||+ .||.+|..+.
T Consensus 11 ~~~~~C~--~C~~~-----~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~~~ 56 (60)
T 2od1_A 11 DSSESCW--NCGRK-----ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL 56 (60)
T ss_dssp CCSSCCT--TTSSC-----CCEECTTTSCCEESSHHHHHHHHH-HHTTTSSCSS
T ss_pred CCCCccc--cCCCc-----ccccCCCCCCeeecCHHHHHHHHH-HHhHHHcccc
Confidence 4457898 56663 358999999999999999999999 5999998654
No 13
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.80 E-value=1.8e-09 Score=79.36 Aligned_cols=46 Identities=33% Similarity=0.813 Sum_probs=38.5
Q ss_pred CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393 325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE 378 (408)
Q Consensus 325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~ 378 (408)
.....|. .|++. .+++|++|+.++|||++||+.||+ .||.+|..+.
T Consensus 13 ~~~~~C~--~C~~~-----~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~~~ 58 (60)
T 2dj8_A 13 DSSESCW--NCGRK-----ASETCSGCNTARYCGSFCQHKDWE-KHHHICSGPS 58 (60)
T ss_dssp CCSCCCS--SSCSC-----CCEECTTTSCCEESSHHHHHHTHH-HHTTTSCCSS
T ss_pred CCCcccc--cCCCC-----CcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHhcc
Confidence 3457898 56663 358999999999999999999999 5999998754
No 14
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=79.79 Aligned_cols=46 Identities=33% Similarity=0.799 Sum_probs=38.3
Q ss_pred CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393 325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE 378 (408)
Q Consensus 325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~ 378 (408)
+....|. .|++. .+++|++|+.++|||++||+.||+ .||..|..+.
T Consensus 15 ~~~~~C~--~C~~~-----~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~~~ 60 (64)
T 2odd_A 15 DSSESCW--NCGRK-----ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL 60 (64)
T ss_dssp CCSSSCT--TTSSC-----CCEEETTTSCCEESSHHHHHHHHH-HHTTTTTSSC
T ss_pred CCCCcCc--cccCC-----CcccCCCCCChhhCCHHHHHHHHH-HHhHHHhccc
Confidence 3457898 56663 358999999999999999999999 6999998653
No 15
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.76 E-value=3.3e-09 Score=75.58 Aligned_cols=43 Identities=42% Similarity=0.961 Sum_probs=35.0
Q ss_pred CCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchh
Q 015393 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAP 376 (408)
Q Consensus 326 ~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~ 376 (408)
....|. .|++. .+++|++|+.++|||++||..||+ .||.+|.+
T Consensus 8 ~~~~C~--~C~~~-----~~~~C~~C~~~~YCs~~CQ~~~W~-~Hk~~C~~ 50 (52)
T 2jw6_A 8 KEQSCV--NCGRE-----AMSECTGCHKVNYCSTFCQRKDWK-DHQHICGQ 50 (52)
T ss_dssp ---CCS--SSSSS-----CSEECTTTCSSEESSHHHHHHHTT-TGGGTTTC
T ss_pred cCCcCC--CCCCC-----CcCcCCCCCCEeecCHHHHHHHHH-HHCHHHcc
Confidence 456888 56664 369999999999999999999999 59999984
No 16
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.64 E-value=4.6e-07 Score=97.85 Aligned_cols=110 Identities=21% Similarity=0.143 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+..|++|.+. .+++++++||.+|. ..+++++|+++|++|.+. ++++|+++||.+|.. .| ++++
T Consensus 58 ~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g------~~~e 129 (723)
T 4gyw_A 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SG------NIPE 129 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence 345555555555443 35556666666555 455566666666665544 355566666665543 23 5556
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
|+++|++|.+. +++.+.++||.+|.. ..+.++|.++|+++.+
T Consensus 130 Ai~~~~~Al~l~P~~~~a~~~L~~~l~~----~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 130 AIASYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHhhhhhHHHh----cccHHHHHHHHHHHHH
Confidence 66666665553 455566666666543 3455555555555554
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=6.8e-07 Score=74.39 Aligned_cols=102 Identities=12% Similarity=0.027 Sum_probs=77.2
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
.+++..++|..|+ ..+++++|+++|++|.+. .++.+++++|.+|.. .| ++.+|+.+|++|.+. .++.+
T Consensus 12 ~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 12 LAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LM------EFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hc------cHHHHHHHHHHHHHhhhhhhHH
Confidence 3456777888887 678888888888888765 478888888888864 34 788888888888764 67888
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS 247 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~ 247 (408)
++.+|.+|.. ..++++|+.+|++|.+. .+..+..
T Consensus 84 ~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 84 YIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8888888865 67888888888888775 3444433
No 18
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=3.9e-07 Score=78.99 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=86.3
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID 208 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~ 208 (408)
.++++.|.+|..|+ ..+++++|+.+|+++... .++.++++||.+|.. .| ++++|+..|++|... +++.
T Consensus 34 ~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g------~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 34 DMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KE------QFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-Hc------cHHHHHHHHHHHHhhCCCCcH
Confidence 46678999999998 789999999999999876 589999999999975 44 899999999999876 7899
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+.++||.+|.. ..+.++|+.+|++|.+...
T Consensus 106 ~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 106 PVFHTGQCQLR----LKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 99999999976 7899999999999998654
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=2.8e-07 Score=78.92 Aligned_cols=116 Identities=9% Similarity=0.025 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+..|+++... .++.+.|.||.+|+ ..+++++|+++|++|.+. .++.++++||.+|.. .| ++++|
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~~~A 84 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EE------NTDKA 84 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------chHHH
Confidence 57888888877654 46678899999998 689999999999999877 589999999999975 34 89999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHH-HHHHHHHHHHc--CCHHHH
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAE-GRRFLVQANAR--ELAAVL 246 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~-A~~w~~kAA~~--G~~~A~ 246 (408)
+.+|++|.+. .++.+.+.||.+|.. ..+..+ +..|+++|.+. +++.+.
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 9999999986 689999999999965 334444 45567888874 455543
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.50 E-value=1.7e-06 Score=78.43 Aligned_cols=113 Identities=12% Similarity=-0.021 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-----------CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCL-----------QNRGSGASLMAKAAIS--SHAQALYSLAVIQFN 180 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-----------~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~ 180 (408)
....++|+.+|+++.+. .++.+.++||.+|. .. +++++|+..|++|.+. .++.+.++||.+|..
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34467788888877654 57788888888887 45 7888888888888886 477888888888853
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 181 GSGGSKNDKDLRAGVALCARAAFL-GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~~-G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.| ++++|+.+|++|.+. .++.+.++||.+|.. ..+.++|+.+|++|.+.
T Consensus 131 -~g------~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 131 -LG------ERDKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQ 180 (217)
T ss_dssp -TT------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred -cC------ChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 55 788888888888654 677888888888865 56788888888888765
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.48 E-value=2.3e-06 Score=77.55 Aligned_cols=111 Identities=14% Similarity=-0.013 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCC----------CC
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGS----------GG 184 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~----------Gv 184 (408)
.++|+.+|+++.+. .++++.++||.+|. ..+++++|+.+|++|.+. .++.+.++||.+|..-. |
T Consensus 21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g- 98 (217)
T 2pl2_A 21 YDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG- 98 (217)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc-
Confidence 45556666655443 45666666666665 455666666666665544 35556666666654310 2
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 185 SKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 185 ~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+..|++|.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+.
T Consensus 99 -----~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 99 -----YLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALAL 147 (217)
T ss_dssp -----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhc
Confidence 555666666666553 455666666666644 45566666666666543
No 22
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=1.3e-06 Score=72.51 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=80.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-------
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG------- 205 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G------- 205 (408)
+.|..+||..|+ ..+++++|+.+|++|.+. .++.+++++|.+|.. .| ++.+|+.+|++|.+..
T Consensus 8 A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~------~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 8 AIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EK------KFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hh------hHHHHHHHHHHHHHhCcccchhh
Confidence 457788999998 689999999999999876 589999999999975 44 8999999999998742
Q ss_pred --CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 206 --HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 206 --~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
...++++||.+|.. ..++++|+.+|++|...
T Consensus 80 ~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 13588999999976 78999999999999863
No 23
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=3.4e-06 Score=74.72 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 117 NWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
...++|+.+|+++.+ .++.+.+++|.+|. ..+++++|+.+|++|... .++.+++++|.+|.. .| ++.+|
T Consensus 20 ~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~------~~~~A 90 (213)
T 1hh8_A 20 KDWKGALDAFSAVQD-PHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TE------KYDLA 90 (213)
T ss_dssp TCHHHHHHHHHTSSS-CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred CCHHHHHHHHHHHcC-CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cc------cHHHH
Confidence 346789999998864 48999999999998 689999999999999876 589999999999975 44 89999
Q ss_pred HHHHHHHHhCC------------------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 195 VALCARAAFLG------------------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 195 ~~~~~kAA~~G------------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+.+|+++.+.. .+.+.++||.+|.. ..+.++|+.+|++|.+...
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCc
Confidence 99999999852 23899999999976 6799999999999998654
No 24
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=2.2e-06 Score=73.19 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=84.0
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID 208 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~ 208 (408)
.++.+.+.+|..|+ ..+++++|+.+|+++... .++.++++||.+|.. .| ++++|+.+|++|... .++.
T Consensus 19 ~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 19 DTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MG------QYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCTH
T ss_pred hhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCch
Confidence 46778899999998 689999999999999766 589999999999964 44 899999999999875 6899
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.++||.+|.. ..+.++|+.+|++|.+.
T Consensus 91 ~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 91 FPFHAAECLLQ----XGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 99999999976 78999999999999874
No 25
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.40 E-value=2.4e-06 Score=92.19 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=104.2
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|++|.+. .++.++++||.+|. ..+++++|+.+|++|.+. ++++++++||.+|.. .| ++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g------~~ 93 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQ------DV 93 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CH
Confidence 34568999999999875 69999999999998 689999999999999876 589999999999975 34 89
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS 247 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~ 247 (408)
++|+++|++|.+. +++.++++||.+|.. ..++++|+.+|++|.+. .++.+..
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 9999999999885 789999999999976 67999999999999985 3455533
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=2.6e-06 Score=71.56 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=81.8
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
++++.+.+|..++ ..+++++|+.+|+++... .++.+++.||.+|.. .| ++++|+.+|++|... .++.+
T Consensus 17 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LG------LYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCcHH
Confidence 5678888999888 689999999999998876 488999999999965 34 889999999999875 68899
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 89 ~~~lg~~~~~----~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQ----LGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 9999999976 67999999999999864
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.39 E-value=2.8e-05 Score=67.30 Aligned_cols=117 Identities=19% Similarity=0.274 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.++.++... .++.+.+.+|.++. ..++++.+..++.+|... .++.+.+.+|.+|.. .| +++
T Consensus 53 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g------~~~ 124 (184)
T 3vtx_A 53 GLPNDAIESLKKFVVLDTTSAEAYYILGSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MG------EHD 124 (184)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hC------Cch
Confidence 4457788888877554 57888888888887 678899999999998765 478999999999975 34 889
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV 245 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A 245 (408)
+|+++|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+.....+
T Consensus 125 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 125 KAIEAYEKTISIKPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHhcchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCCccCH
Confidence 999999999875 689999999999976 6799999999999998755443
No 28
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=3.2e-06 Score=72.49 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=78.6
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
++.+++.+|.+|+ ..+++++|+.+|++|.+. .++.++++||.+|.. .| ++.+|+.+|++|.+. .++.+
T Consensus 10 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SG------QHEKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHhCCCCHHH
Confidence 4567888888888 688899999999998876 478899999998865 34 788999999998875 67889
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++.||.+|.. ..++++|+.+|++|.+.
T Consensus 82 ~~~lg~~~~~----~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFD----MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHHh
Confidence 9999999976 67889999999998864
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.38 E-value=1.2e-05 Score=72.30 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHc---CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 117 NWSESAHRFLKLCADA---GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~---G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
...++|+.+|+++.+. .+..+.+++|.+|. ..+++++|+.+|++|.+.. ++.+++.||.+|.. .| ++
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~------~~ 92 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MK------NN 92 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TT------CH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cc------cH
Confidence 4468899999988875 57899999999998 6899999999999999874 78999999999975 34 89
Q ss_pred HHHHHHHHHHHhC--CCH-------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393 192 RAGVALCARAAFL--GHI-------DALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
.+|+.+|+++.+. .++ .+.+.+|.+|.. ..+.++|+.+|++|.+....
T Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCC
Confidence 9999999999885 456 668999999976 68999999999999987655
No 30
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.38 E-value=6.1e-06 Score=68.52 Aligned_cols=94 Identities=10% Similarity=-0.041 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .++.+.+++|.+|. ..+++++|+.+|++|.+. .++.+++++|.+|.. .| ++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~ 97 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MR------EW 97 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CC------CH
Confidence 34568999999998765 68999999999998 689999999999999876 589999999999975 45 89
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
++|+++|++|.+. ++.++...|+.++
T Consensus 98 ~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999986 7899999999875
No 31
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.8e-06 Score=67.40 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=81.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+++.+.+|..|+ ..+++++|+.+|++|.+. .++.+.+++|.+|.. .| ++.+|+.+|++|.+. .++.+.
T Consensus 4 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LM------SFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCcHHHH
Confidence 567888998888 689999999999999876 478999999999975 34 889999999999875 678999
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+.+|.+|.. ..+.++|+.+|++|.+..
T Consensus 76 ~~lg~~~~~----~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIA----VKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhCHHHHHHHHHHHHHhC
Confidence 999999976 678999999999998754
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.35 E-value=1.7e-05 Score=68.64 Aligned_cols=113 Identities=20% Similarity=0.146 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++++.+.||.+|. ..+++++|+.+++++... .++.+.+.+|.++... + ++.
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~ 90 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI-D------EKQ 90 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-T------CHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc-C------CHH
Confidence 3468999999998775 69999999999998 689999999999999766 4789999999999753 3 789
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++..++.++... .++.+.+.+|.+|.. ..+.++|+.+|+++.+..
T Consensus 91 ~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 91 AAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhc
Confidence 999999999875 689999999999976 679999999999999853
No 33
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=2.4e-06 Score=73.91 Aligned_cols=112 Identities=18% Similarity=0.094 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH-HHcCCCCCCCccCH--
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI-QFNGSGGSKNDKDL-- 191 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~-y~~G~Gv~~~~~d~-- 191 (408)
.++|+.+|+++.+. .++.+.+.||.+|+ ..+++++|+.+|+++... .++.+++.+|.+ |.. .| ++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~------~~~~ 97 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-AS------QHMT 97 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TT------TCCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cC------Ccch
Confidence 45677888877664 58999999999998 689999999999999875 589999999999 633 33 44
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
.+|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Confidence 7999999999875 679999999999976 6899999999999998643
No 34
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.30 E-value=3.9e-05 Score=61.15 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|..+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++... .++.+.+.+|.+|.. .| ++++
T Consensus 16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~ 87 (136)
T 2fo7_A 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QG------DYDE 87 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT------CHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hc------CHHH
Confidence 467889999988764 57899999999988 578999999999999876 468899999999964 34 8999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|+.+|+++... .++.+.+.+|.+|.. ..+.++|..+|+++.+.
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHcc
Confidence 99999999875 478899999999975 67999999999998764
No 35
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=1.1e-05 Score=65.99 Aligned_cols=97 Identities=19% Similarity=0.121 Sum_probs=84.4
Q ss_pred cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 015393 132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHI 207 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~ 207 (408)
..++.+.+.+|..|+ ..+++++|+.+|+++... .++.+++++|.+|.. .| ++.+|+.+|+++... +++
T Consensus 6 ~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCchhH
Confidence 457889999999998 689999999999999876 478999999999975 34 889999999999875 688
Q ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 78 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 78 KAHFFLGQCQLE----MESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 999999999976 67899999999999874
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.28 E-value=8.1e-06 Score=74.58 Aligned_cols=109 Identities=10% Similarity=-0.114 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+.+|+++.+. .++.+++.||.+|. ..+++++|+.+|++|.+. .++.+++.||.+|.. .| ++++
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g------~~~~ 129 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG------RDKL 129 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHHH
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hc------cHHH
Confidence 345566666655543 25566666666655 455666666666666553 245566666666543 23 5556
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
|+.+|+++.+. .+......++.++.. .+.++|+.+|.++..
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQK-----LDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHh
Confidence 66666666543 334444444443322 355566666655554
No 37
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.25 E-value=1.5e-05 Score=73.46 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHc--CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHc-CCCCC
Q 015393 117 NWSESAHRFLKLCADA--GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFN-GSGGS 185 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~-G~Gv~ 185 (408)
...++|+.+|+++.+. ++ +.+.+.||.+|+ ..+++++|+.+|+++... ..+.++|.+|.+|.. +....
T Consensus 29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 3468899999988875 46 899999999998 689999999999999987 347899999999975 11111
Q ss_pred CCccCHHHHHHHHHHHHhC--CCHHHH-----------------HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 186 KNDKDLRAGVALCARAAFL--GHIDAL-----------------RELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~--G~~~A~-----------------~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
....++.+|+.+|+++.+. +++.+. +.+|.+|.. ..++++|+.+|+++.+.
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEAAAVTYEAVFDA 177 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 1233899999999999875 343333 899999976 78999999999999875
No 38
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.24 E-value=4.2e-05 Score=64.78 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|..+|+++.+. .++.+.+.+|.+|. ..+++++|+++|+++... .++.+.+.+|.+|.. .| ++
T Consensus 55 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~ 126 (186)
T 3as5_A 55 TGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LG------RF 126 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cC------cH
Confidence 34568899999988775 57899999999998 678999999999999876 588999999999965 34 88
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++|+.+|+++.+. .++.+.+.||.+|.. ..+.++|..+|+++.+.
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence 9999999999875 578999999999976 67999999999998763
No 39
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.22 E-value=9.5e-06 Score=72.87 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHH----------------hHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYT----------------LGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI 177 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~----------------LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~ 177 (408)
..++|+.+|+++.+. .++++.+. ||.+|. ..+++++|+.+|++|.+. .++.++++||.+
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 456777777777664 36677777 787777 577888888888887765 477888888888
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQ 218 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~ 218 (408)
|.. .| ++++|+.+|+++.+. .++.+.+.||.+|.
T Consensus 98 ~~~-~g------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 98 QVC-RG------QEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHH-HT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHH-cC------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 754 23 777888888888764 57778888887764
No 40
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=1.5e-05 Score=64.21 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=60.6
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
++.+++.+|.+|+ ..+++++|+.+|+++.+. .++.+.+.+|.+|.. .| ++++|+.+|+++.+. .++.+
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LL------EFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHHhCCCchHH
Confidence 4556666666666 466667777777776654 356667777776643 23 666777777776654 45666
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+.+|.+|.. ..+.++|+.+|+++.+.
T Consensus 87 ~~~la~~~~~----~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 87 YTRKAAALEA----MKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHh
Confidence 7777776654 45667777777766654
No 41
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1e-05 Score=62.98 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=80.9
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C--C
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G--H 206 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G--~ 206 (408)
+++.+.+.+|.+|+ ..+++++|+.+|+++.+. .++.+++++|.+|.. .| ++++|+.+|+++.+. . +
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 4 QNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LE------RYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp SSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTSCCTTC
T ss_pred CcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHhCcccch
Confidence 45677888999988 688999999999998876 478899999999965 33 788999999999886 4 7
Q ss_pred HHHHHHHHHHHHcCCCcc-ccHHHHHHHHHHHHHcC
Q 015393 207 IDALRELGHCLQDGYGVR-QNIAEGRRFLVQANARE 241 (408)
Q Consensus 207 ~~A~~~Lg~~y~~G~Gv~-~d~~~A~~w~~kAA~~G 241 (408)
+.+.+.||.+|.. . .+.++|+.+|+++....
T Consensus 76 ~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 KDVWAAKADALRY----IEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcc
Confidence 8899999999965 5 78899999999887643
No 42
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=1.2e-05 Score=66.21 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=71.0
Q ss_pred HHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHH
Q 015393 138 CYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALREL 213 (408)
Q Consensus 138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~L 213 (408)
.+.+|..++ ..+++++|+..|++|... .++.+++.||.+|.. .| ++.+|+..|++|.+. .++.+.+.|
T Consensus 20 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NE------KDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 466777776 577888888888888765 488888888888864 34 778888888888875 578888888
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 214 GHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 214 g~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.+|.. ..+.++|+.+|+++.+.
T Consensus 92 a~~~~~----~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTN----EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHC-
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHh
Confidence 888865 67788888888888764
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.18 E-value=8.7e-05 Score=65.13 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHcCCCCCCCc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCL-QNRGSGASLMAKAAIS----SHAQALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~~~ 188 (408)
....++|+.+|+++.+. .++.+.+.+|.+|. .. +++++|+.+|+++.+. .++.+++.+|.+|.. .|
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----- 127 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QG----- 127 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TT-----
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cC-----
Confidence 34467788888877664 47788888888887 56 7888888888888772 236788888888864 34
Q ss_pred cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+.
T Consensus 128 -~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 128 -QFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDADYYFKKYQSR 176 (225)
T ss_dssp -CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 778888888888764 567888888888865 66788888888888764
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.17 E-value=6.2e-05 Score=66.09 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+++|+++.+.. ++.+++.+|.+|..-.| ++.+|
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------~~~~A 96 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN------RPAES 96 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------CHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC------cHHHH
Confidence 45666666666553 45667777777766 4566777777777766543 56667777777654213 66677
Q ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL----GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|+++.+. .+..+.+.+|.+|.. ..+.++|+.+|+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 7777777662 235666777777654 45667777777776654
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.16 E-value=1.1e-05 Score=82.32 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=99.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHc-CCCCCCC-ccC
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFN-GSGGSKN-DKD 190 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~-G~Gv~~~-~~d 190 (408)
+++.++|+.+|+++.+. .++++++.||.+|+ ..+++++|+.+|++|.+.. ++.++++||.+|.. +.|.... ..+
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhh
Confidence 33438999999988765 58999999999998 6899999999999998774 57899999999976 2221100 038
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-----CCCccccHHHHHHHHHHHHHc
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQD-----GYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~-----G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+++|+.+|++|.+. .++.+++.||.+|.. |. -..++++|+.+|++|.+.
T Consensus 195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHh
Confidence 89999999999875 689999999999964 11 227899999999999985
No 46
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.16 E-value=2.2e-05 Score=75.45 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 119 SESAHRFLKLCADAG----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
.++|+.+|+++.+.. ++.++++||.+|. ..+++++|+.+|+++.+. .++.++++||.+|.. .| +++
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~ 264 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GD------RSE 264 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence 678999999988764 7899999999998 689999999999999876 589999999999976 44 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|+.+|+++.+. .++.+.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 265 EAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 999999999875 679999999999976 67899999999999874
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.16 E-value=4.8e-05 Score=68.78 Aligned_cols=114 Identities=8% Similarity=0.059 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHcCCCCCCCcc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAI----SSHAQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~----~G~~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
....++|+.+|+++.+. .++.+.+.||.+|. ..+++++|+++|+++.. ..++.+.+.+|.+|.. .|
T Consensus 84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g------ 155 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK------ 155 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT------
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC------
Confidence 34568889999888765 57889999999988 67899999999999977 3467889999998865 34
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++++|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+..
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPARQYYDLFAQGG 205 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 788999999998875 578899999999976 678999999999987643
No 48
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=1.8e-05 Score=67.51 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------------------CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------------------SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------------------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
+.+...+|..|+ ..+++.+|+.+|++|... .++.+++++|.+|.. .| ++.+|
T Consensus 11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~------~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IG------DLHEA 82 (162)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HT------CHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cC------cHHHH
Confidence 456778888887 688999999999998875 356789999999864 34 88899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+.+|.+|.+. .++.+++.+|.+|.. ..++++|+.+|++|....
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcC
Confidence 9999999875 688999999999976 678999999999998764
No 49
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.15 E-value=2.4e-05 Score=70.29 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=87.2
Q ss_pred HHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--
Q 015393 130 ADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-- 204 (408)
Q Consensus 130 Ae~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-- 204 (408)
+...++++.+++|.+|+ ..+++++|+.+|+++.+. .+..+.+++|.+|.. .| ++++|+.+|++|.+.
T Consensus 2 a~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 2 AQTTDPNQLKNEGNDAL-NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IK------KYKEAADYFDIAIKKNY 73 (228)
T ss_dssp --CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTTC
T ss_pred ccccCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hh------cHHHHHHHHHHHHHhCc
Confidence 34568899999999998 689999999999999986 478899999999975 34 899999999999987
Q ss_pred CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 205 GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 205 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.++.+++.||.+|.. ..+.++|+.+|++|.+..
T Consensus 74 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 74 NLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp SHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHC
Confidence 478899999999976 689999999999999853
No 50
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3.6e-05 Score=63.28 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=77.6
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH-----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G 205 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~-----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G 205 (408)
.+..+++.+|..|+ ..+++++|+.+|+++.+... ..+++++|.+|.. .| ++++|+.+|+++.+. .
T Consensus 26 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LE------DYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-Hc------cHHHHHHHHHHHHhhCcc
Confidence 46777888888887 67889999999999887642 7888888988865 33 788999999988765 5
Q ss_pred CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 206 HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 206 ~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++.+.+.+|.+|.. ..+.++|+.+|+++.+.
T Consensus 98 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEK----LGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence 78888999998866 67888999999988775
No 51
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=3.8e-05 Score=60.14 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=64.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+.+++.+|..++ ..+++++|+.+|+++... .++.+.+.+|.+|.. .| ++.+|+.+|+++.+. .++.+.
T Consensus 4 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KG------DYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHhCcccHHHH
Confidence 456677777766 567777777777777654 367777777777754 23 677777777777664 456777
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|.+|.. ..+.++|+.+|+++.+.
T Consensus 76 ~~~a~~~~~----~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEF----LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----HhhHHHHHHHHHHHHHc
Confidence 777777754 45777777777777765
No 52
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=2e-05 Score=63.72 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=75.8
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcH---HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC--
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHA---QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH-- 206 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~---~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~-- 206 (408)
++.|.+|..++ ..+++++|+.+|+++... +++ .+.+.+|.+|.. .| ++.+|+.+|+++... .+
T Consensus 3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TR------NFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHHHCCCCcc
Confidence 46788888887 678999999999998874 355 789999998865 34 888999999998875 45
Q ss_pred -HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 207 -IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 207 -~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+++.||.+|.. ..+.++|+.+|+++.+.
T Consensus 75 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 7889999999975 67899999999998875
No 53
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=2.2e-05 Score=62.77 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=82.0
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--C----
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--H---- 206 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~---- 206 (408)
+.+++.+|.+|+ ..+++++|+.+|+++... .++.+++++|.+|.. .| ++.+|+.+|+++.+.. +
T Consensus 4 ~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KG------DYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHhhccccchhH
Confidence 467889999988 689999999999999876 478999999999964 33 8999999999998752 3
Q ss_pred ---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 207 ---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 207 ---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+.+.+.+|.+|.. ..+.++|+.+|+++.+..
T Consensus 76 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 RQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence 8899999999976 679999999999999864
No 54
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=6.3e-05 Score=67.55 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=84.2
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
++.+.+.+|.+|+ ..+++++|+.+|+++.+. .++.+.++||.+|.. .| ++.+|+.+|+++.+. .++.+
T Consensus 138 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 138 KAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LM------SFPEAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHhCHHHHHH
Confidence 5678899999998 679999999999999876 478999999999975 34 899999999999875 67899
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++.+|.+|.. ..+.++|+.+|++|.+..
T Consensus 210 ~~~l~~~~~~----~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 210 YIRKATAQIA----VKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHhC
Confidence 9999999976 689999999999998754
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.10 E-value=4.8e-05 Score=68.76 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+++|+++.+. .++.+++.+|.+|.. .| ++++|
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g------~~~~A 124 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QK------RYEEA 124 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-Hh------HHHHH
Confidence 46788888887764 58999999999998 689999999999999876 478999999999975 34 89999
Q ss_pred HHHHHHHHh--C--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 195 VALCARAAF--L--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 195 ~~~~~kAA~--~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+++|+++.. . .++.+.+.+|.+|.. ..+.++|+.+|+++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 999999987 3 467899999999976 678999999999998754
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.09 E-value=2.7e-05 Score=73.64 Aligned_cols=111 Identities=13% Similarity=-0.049 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCC
Q 015393 119 SESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGS 182 (408)
Q Consensus 119 ~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~ 182 (408)
.++|+..|.+|.+. |+ +.++.++|.+|. ..+++++|+.+|++|.+. |+ +.++.+||.+|..-.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l 131 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 47788888888775 55 468899999998 678999999999999865 44 568999999997633
Q ss_pred CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 183 GGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
| ++++|+.+|++|.+. ++ ..++.+||.+|.. ..++++|+.+|++|.+.
T Consensus 132 g------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 132 H------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKS 187 (292)
T ss_dssp C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred c------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 5 899999999999874 33 4578899999976 67999999999999984
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.09 E-value=1.5e-05 Score=79.47 Aligned_cols=115 Identities=3% Similarity=-0.068 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.+|+++.+. .++.+++++|.+|. ..+++++|+..|++|.+. .++.+++++|.+|.. .| ++++|
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g------~~~eA 219 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FK------LWDNE 219 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CCTTH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cC------ChHHH
Confidence 55666666665543 35666666666665 345566666666666554 356666666666643 22 34456
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHc-CCCcccc-HHHHHHHHHHHHHcC
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQD-GYGVRQN-IAEGRRFLVQANARE 241 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~Gv~~d-~~~A~~w~~kAA~~G 241 (408)
+.+|++|.+. .+..+.+++|.+|.. +.-...- +..++.+|++|....
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 6666666554 456666666666655 2111111 122346666666653
No 58
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.08 E-value=5.4e-05 Score=68.71 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------C--cHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------S--HAQALYSLA 175 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G--~~~A~~~Lg 175 (408)
....++|+.+|+++.+. ....++++||.+|. ..+++++|+.+|+++.+. . ...++++||
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44578899999988775 34678999999998 689999999999999876 2 366899999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHhC------------------------------------------------C--
Q 015393 176 VIQFNGSGGSKNDKDLRAGVALCARAAFL------------------------------------------------G-- 205 (408)
Q Consensus 176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~------------------------------------------------G-- 205 (408)
.+|.. .| ++++|+.+|+++.+. .
T Consensus 177 ~~~~~-~g------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 177 SCYLK-QG------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHH-HT------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHH-cC------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 99964 34 889999999999863 2
Q ss_pred -CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 206 -HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 206 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+.+.+.||.+|.. ..+.++|..+|++|.+.
T Consensus 250 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRR----QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 24478889999966 67899999999998763
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.08 E-value=1.9e-05 Score=80.50 Aligned_cols=118 Identities=17% Similarity=0.049 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhcc---------CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC--
Q 015393 116 NNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCL---------QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG-- 181 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~---------~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G-- 181 (408)
....++|+.+|+++.+.. +..++++||.+|. .. +++++|+.+|++|.+. .++.++++||.+|..-
T Consensus 150 ~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 345789999999998754 5799999999998 45 8899999999999876 5899999999999642
Q ss_pred -CCCCCCccCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 182 -SGGSKNDKDLRAGVALCARAAFL-----GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 182 -~Gv~~~~~d~~kA~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.|. ...++++|+.+|++|.+. .++.++++||.+|.. ..++++|+.+|++|.+.
T Consensus 229 ~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 229 NTGQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAAL 287 (474)
T ss_dssp HTTC--CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred hhcc--ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 110 123899999999999874 689999999999976 67999999999999875
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.08 E-value=4.2e-06 Score=71.45 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=78.0
Q ss_pred HhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393 140 TLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGH 215 (408)
Q Consensus 140 ~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~ 215 (408)
.||.+|. ..++.++|+..|++|.... ++.+.|.||.+|.. .| ++++|+++|++|.+. .++.+.+.||.
T Consensus 2 ~LG~~~~-~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~------~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 2 PLGSMRR-SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AK------EYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp -----CC-CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhHHHHH-HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4788887 6789999999999998763 56688999999975 34 899999999999876 68999999999
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHcC--CHHHHhh
Q 015393 216 CLQDGYGVRQNIAEGRRFLVQANARE--LAAVLSS 248 (408)
Q Consensus 216 ~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~~~ 248 (408)
+|.. ..+.++|+.+|++|.+.. ++.+...
T Consensus 74 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 104 (150)
T 4ga2_A 74 LYEL----EENTDKAVECYRRSVELNPTQKDLVLK 104 (150)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHH----cCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9976 689999999999999854 4555443
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.08 E-value=2.3e-05 Score=81.16 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .++.++++||.+|. ..+++++|+++|++|.+. .++.++++||.+|.. .| ++
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~ 107 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AG------QA 107 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC------CH
Confidence 34568999999998875 58999999999998 689999999999999876 589999999999975 34 89
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++|+++|+++.+. .++.+.++||.+|.. .+--.+.++|..+|+++.+.+.
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhcCC
Confidence 9999999999875 689999999999976 1112799999999999998754
No 62
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.08 E-value=5.3e-05 Score=78.35 Aligned_cols=92 Identities=15% Similarity=0.013 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC--CCCCCCcc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG--SGGSKNDK 189 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G--~Gv~~~~~ 189 (408)
....++|+.+|+++.+. .++.+.++||.+|. ..+++++|+++|++|.+. .++.+.++||.+|..- +|
T Consensus 70 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g------ 142 (568)
T 2vsy_A 70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR------ 142 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT------
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc------
Confidence 34467888888877664 57888888888887 578888888888888765 4778888888888653 14
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHH
Q 015393 190 DLRAGVALCARAAFL--GHIDALRELG 214 (408)
Q Consensus 190 d~~kA~~~~~kAA~~--G~~~A~~~Lg 214 (408)
+.++|.++|+++.+. .+..+.+.|+
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 788888888888775 3555666665
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.07 E-value=5.4e-05 Score=67.63 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+.. ++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.+.+.+|.+|.. .| ++
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~ 175 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EG------ML 175 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CC
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cC------CH
Confidence 345678888888877654 7888888998887 678899999999988776 478888889988864 33 67
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcc
Confidence 7899999988765 578888889998865 67888999999988775
No 64
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.07 E-value=0.00013 Score=61.21 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+++|.+|. ..+++++|+.+|+++... .++.+++++|.+|.. .| ++.
T Consensus 27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~------~~~ 98 (166)
T 1a17_A 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFR 98 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hc------cHH
Confidence 3467899999988765 58999999999998 689999999999999876 578999999999975 34 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHH--HHcCCCccccHHHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHC--LQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~--y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+|+.+|+++.+. .+..+...++.+ +.. ..+.++|+.+|.++..
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchHH
Confidence 999999999875 577777555554 543 5788999999988754
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.06 E-value=6.3e-05 Score=68.67 Aligned_cols=113 Identities=9% Similarity=0.020 Sum_probs=93.6
Q ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc
Q 015393 116 NNWSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~ 188 (408)
....++|+.+|+++.+.. ...+.+.+|.+|. ..+++++|+.+|+++.+. .++.+++.||.+|.. .|
T Consensus 50 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~----- 122 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KG----- 122 (272)
T ss_dssp TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT-----
T ss_pred HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cc-----
Confidence 344688999999888743 2456889999988 678999999999999876 578899999999975 34
Q ss_pred cCHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 189 KDLRAGVALCARAAFL--GHIDALRELG-HCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg-~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++++|+.+|+++.+. .++.+.+.|| .+|..+ ++++|+.+|+++.+..
T Consensus 123 -~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-----EYVKADSSFVKVLELK 172 (272)
T ss_dssp -CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHS
T ss_pred -CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhC
Confidence 889999999999875 6789999999 888775 9999999999998754
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.06 E-value=9.6e-05 Score=65.95 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+.. ++.+.+.+|.+|.. .| ++
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~ 141 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LE------QP 141 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TS------CH
T ss_pred cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hc------cH
Confidence 34568899999988775 48899999999998 6899999999999998764 88999999999975 34 89
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++|+.+|+++.+. .++.+.+.+|.+|.. ..+.++|+.+|+++....
T Consensus 142 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 142 KLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 9999999999875 679999999999976 678899999999998753
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.06 E-value=5.7e-05 Score=73.60 Aligned_cols=113 Identities=10% Similarity=0.045 Sum_probs=93.2
Q ss_pred cCCHHHHHHHHHHHHHc---------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA---------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQ 178 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~---------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y 178 (408)
....++|+.++++|.+. +...+.++||.+|. ..+++++|+.+|++|.+. + ...+.++||.+|
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 34568899999888753 33568999999998 689999999999999855 3 235899999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAF--------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~--------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.. .| ++++|+.+|++|.+ .+.+.+.+.||.+|.. ..+.++|..+|++|.+.
T Consensus 235 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 235 NS-QS------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HH-TT------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HH-CC------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 75 34 89999999999988 3457799999999976 67999999999999864
No 68
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.06 E-value=7.6e-05 Score=58.88 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=61.2
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+.+++.+|.+|. ..+++++|+.+|+++... .++.+++.+|.+|.. .| ++++|+.+|+++.+. .++.+.
T Consensus 9 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHhCCccHHHH
Confidence 456666776666 466777777777776654 356667777777654 23 666777777777654 456667
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.||.+|.. ..+.++|+.+|+++.+.
T Consensus 81 ~~la~~~~~----~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYK----QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence 777777654 45677777777776654
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.06 E-value=1.3e-05 Score=85.69 Aligned_cols=114 Identities=12% Similarity=0.003 Sum_probs=97.7
Q ss_pred cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+ ..++.+++++|.+|. ..+++++|+..|++|.+. +++.++++||.+|.. .| ++
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g------~~ 517 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AG------NT 517 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HT------CC
T ss_pred cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cC------Ch
Confidence 3456889999998875 579999999999998 689999999999999876 689999999999965 23 55
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++ +.+|++|.+. .++.++++||.+|.. ..+.++|+.+|++|.+...
T Consensus 518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp CT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTST
T ss_pred HH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCc
Confidence 57 8899999875 689999999999976 7799999999999987643
No 70
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.05 E-value=0.0001 Score=68.76 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHcCCCCC
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAI-----------SSHAQALYSLAVIQFNGSGGS 185 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~-----------~G~~~A~~~Lg~~y~~G~Gv~ 185 (408)
.++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.. ..++.++++||.+|.. .|
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g-- 250 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK-LK-- 250 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH-TT--
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH-hc--
Confidence 45566666655543 35556666666655 45566666666666655 2334566666666643 22
Q ss_pred CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 186 KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+.
T Consensus 251 ----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 ----KYAEALDYHRQALVLIPQNASTYSAIGYIHSL----MGNFENAVDYFHTALGL 299 (330)
T ss_dssp ----CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCHHHHHHHHHTTTTT
T ss_pred ----CHHHHHHHHHHHHhhCccchHHHHHHHHHHHH----hccHHHHHHHHHHHHcc
Confidence 555666666666543 355566666666644 45566666666666543
No 71
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.03 E-value=6.7e-05 Score=62.92 Aligned_cols=96 Identities=11% Similarity=-0.051 Sum_probs=83.6
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
.+.+.+.+|..|+ ..+++++|+.+|+++.+. .++.+++++|.+|.. .| ++.+|+.+|+++.+. .++.+
T Consensus 12 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TE------CYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcccHHH
Confidence 3567888999988 689999999999999876 479999999999975 34 899999999999875 68999
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+.+|.+|.. ..+.++|+.+|+++.+..
T Consensus 84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 84 YYRRAASNMA----LGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence 9999999976 679999999999999863
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00014 Score=65.19 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHHcC--C-------HHHHHHhHHHHhhccCCHHHHHHHHHHHHh----------------------
Q 015393 116 NNWSESAHRFLKLCADAG--N-------VEACYTLGMIRFYCLQNRGSGASLMAKAAI---------------------- 164 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G--~-------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~---------------------- 164 (408)
....++|+.+|+++.+.. + +.+++.||.+|. ..+++++|+.+|+++..
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence 345688999999887753 2 789999999998 68899999999999988
Q ss_pred ----c--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHH
Q 015393 165 ----S--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ 236 (408)
Q Consensus 165 ----~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~k 236 (408)
. .++.+++.+|.+|.. .| ++.+|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFT-KS------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNK 198 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 3 356788999999975 34 899999999999875 578999999999976 6799999999999
Q ss_pred HHHcC
Q 015393 237 ANARE 241 (408)
Q Consensus 237 AA~~G 241 (408)
+.+..
T Consensus 199 al~~~ 203 (258)
T 3uq3_A 199 AIEKD 203 (258)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98753
No 73
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=7.1e-05 Score=59.55 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+.+.+.+|.+|+ ..+++++|+.+|+++... .++.+.+.+|.+|.. .| ++.+|+.+|+++... .++.+.
T Consensus 12 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LG------NYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hh------chHHHHHHHHHHHhcCccCHHHH
Confidence 445555555555 455666666666665543 345556666666543 22 555666666666543 345566
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|.+|.. ..+.++|+.+|+++...
T Consensus 84 ~~~~~~~~~----~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 84 GRMGLALSS----LNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence 666666544 34566666666665553
No 74
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.03 E-value=8.5e-05 Score=70.84 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 119 SESAHRFLKLCADAG----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
.++|+.+|+++.+.. ++.+.+.||.+|. ..+++++|+.+|+++... .++.++++||.+|.. .| ++.
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g------~~~ 268 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN------QSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC------CHH
Confidence 578999999887754 6789999999998 689999999999999875 478999999999975 44 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|+.+|+++.+. .++.+.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 999999999875 689999999999976 78999999999999873
No 75
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.03 E-value=1.7e-05 Score=75.56 Aligned_cols=109 Identities=22% Similarity=0.156 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393 118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG 181 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G 181 (408)
..++|+..|.++++. |+ ..++.++|.+|. ..+++++|+.+|++|.+. |+ ..++.+||.+|..
T Consensus 51 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 456777777777664 33 457889999988 578999999999999765 33 5688999999976
Q ss_pred CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
| ++++|+.+|++|.+. |+ ..++.+||.+|.. ..++++|+.+|++|.+
T Consensus 129 -g------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 129 -L------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKS 183 (307)
T ss_dssp -T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred -C------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 6 899999999999874 43 5688899999976 6799999999999987
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.02 E-value=5.1e-05 Score=68.88 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----------CcHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----------SHAQALYSLAV 176 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg~ 176 (408)
...++|+.+|+++.+. ..+.++++||.+|. ..+++++|+.+|++|.+. ....++++||.
T Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3467888888888765 24568999999998 789999999999999876 35778999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 177 IQFNGSGGSKNDKDLRAGVALCARAAFL--------G--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--------G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|.. .| ++++|+.+|+++.+. . ...+++.||.+|.. ..+.++|+.+|+++.+.
T Consensus 136 ~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 136 LCQN-QG------KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHT-TT------CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHH-cC------CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 9974 34 899999999999875 1 35688999999976 67999999999999874
No 77
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.02 E-value=2e-06 Score=87.47 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=40.2
Q ss_pred CCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhh
Q 015393 327 LRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380 (408)
Q Consensus 327 ~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~ 380 (408)
...|. .|++.. ..+.+|++|+.+.|||++||+.||+ .||..|..+..+
T Consensus 49 ~~~C~--~C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~~ 96 (433)
T 3qww_A 49 GHHCE--CCFARK---EGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVVL 96 (433)
T ss_dssp TTBCT--TTCCBC---SSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHHS
T ss_pred CCcCC--cccccC---CCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHHh
Confidence 46888 565542 3578999999999999999999999 699999988765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.01 E-value=6.4e-05 Score=63.63 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.+.+.+|.+|.. .| ++++
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~ 94 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQ------KYDL 94 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHH
T ss_pred CHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hc------CHHH
Confidence 457888888877654 68999999999998 689999999999999876 578999999999965 23 8899
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
|.++|+++... .++.+.+.+|.+|.. ..+.++|+.+|+++.+..
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcC
Confidence 99999999875 688999999999976 679999999999998764
No 79
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.01 E-value=6.6e-05 Score=64.72 Aligned_cols=84 Identities=14% Similarity=0.018 Sum_probs=73.2
Q ss_pred hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
.....++|+.+|+++.+. .++.++++||.+|. ..+++++|+.+|++|... +++.++++||.+|.. .| +
T Consensus 48 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg------~ 119 (151)
T 3gyz_A 48 NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LK------A 119 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TT------C
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------C
Confidence 344578999999988765 69999999999998 789999999999999876 589999999999975 45 8
Q ss_pred HHHHHHHHHHHHhCCC
Q 015393 191 LRAGVALCARAAFLGH 206 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G~ 206 (408)
+++|+.+|++|.+...
T Consensus 120 ~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 120 PLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999998643
No 80
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.99 E-value=2.2e-06 Score=86.92 Aligned_cols=50 Identities=30% Similarity=0.676 Sum_probs=40.9
Q ss_pred CCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhhc
Q 015393 326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWL 381 (408)
Q Consensus 326 ~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~~ 381 (408)
....|. .|++.. ..+.+|++|+.+.|||++||+.||+ .||.+|..+..+.
T Consensus 46 ~~~~C~--~C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~ 95 (429)
T 3qwp_A 46 RGVVCD--RCLLGK---EKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKSCK 95 (429)
T ss_dssp BTTBCT--TTCCBC---SSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHHTT
T ss_pred CCCcCc--CCCCcC---CCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHhcC
Confidence 346788 555432 2568999999999999999999999 6999999888763
No 81
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.98 E-value=6.9e-05 Score=68.37 Aligned_cols=113 Identities=9% Similarity=0.040 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~ 188 (408)
....++|+.+|+++.+. .++.+.+.||.+|. ..+++++|+.+|+++.+.. ...+++.+|.+|.. .|
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~-~~----- 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK-KG----- 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH-TT-----
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH-cc-----
Confidence 34568899999988775 47889999999988 6899999999999999843 25568999999975 34
Q ss_pred cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++.+|+.+|+++.+. .++.+++.||.+|.. ..++++|+.+|++|.+.
T Consensus 89 -~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 89 -QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp -CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCS
T ss_pred -cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhc
Confidence 899999999999885 688999999999976 77999999999999875
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.97 E-value=0.00011 Score=67.98 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=90.6
Q ss_pred cCCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc------C----cHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS------S----HAQALYSLA 175 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~------G----~~~A~~~Lg 175 (408)
....++|+.+|+++.+. ....+.++||.+|. ..+++++|+++|+++.+. + .+.+.+.||
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 202 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34578899999988774 24567889999988 689999999999999876 2 356788999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHhC---------------------------------------------------
Q 015393 176 VIQFNGSGGSKNDKDLRAGVALCARAAFL--------------------------------------------------- 204 (408)
Q Consensus 176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--------------------------------------------------- 204 (408)
.+|.. .| ++++|+.+|+++.+.
T Consensus 203 ~~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 203 SCYLK-QG------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHH-HT------CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHH-cC------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 99864 34 889999999999862
Q ss_pred CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 205 GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 205 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
..+.+++.||.+|.. ..+.++|+.+|++|.+.
T Consensus 276 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 276 TVTTTLKNLGALYRR----QGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 245678889999976 68999999999998763
No 83
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.97 E-value=8.1e-05 Score=70.24 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=77.0
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID 208 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~ 208 (408)
.++.+.+.+|..|+ ..+++++|+.+|++|... .++.+++++|.+|.. .| ++.+|+.+|++|.+. +++.
T Consensus 2 ~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~------~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSCTTCHH
T ss_pred hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCCHH
Confidence 35678888888887 678888888888888765 478888888888864 34 788888888888875 6788
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+.||.+|.. ..+.++|+.+|++|.+.
T Consensus 74 ~~~~lg~~~~~----~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 74 AHFFLGQCQLE----MESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 88888888875 56888888888888764
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.96 E-value=4.8e-05 Score=74.12 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=94.0
Q ss_pred cCCHHHHHHHHHHHHHc----C----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA----G----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQ 178 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y 178 (408)
....++|+.+|++|.+. + .+.+.++||.+|. ..+++.+|+.+|++|.+. +.+.++++||.+|
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 44578999999999875 3 4578999999998 689999999999999854 3467899999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAFL----GHI----DALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.. .| ++++|+.+|++|.+. ++. .+.++||.+|.. ..+.++|+.+|++|.+
T Consensus 195 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 195 LD-LK------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HH-TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HH-hc------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 75 34 899999999999864 433 489999999976 6799999999999998
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.96 E-value=7.7e-05 Score=66.82 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=87.1
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHH----------------HHHHHHcCCCCCCCccCHHHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYS----------------LAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~----------------Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
+++..+..|..++ ..+++++|+.+|+++.+.. ++.+.+. ||.+|.. .| ++++|+
T Consensus 3 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g------~~~~A~ 74 (208)
T 3urz_A 3 SVDEMLQKVSAAI-EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-NR------NYDKAY 74 (208)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-CC------CHHHHH
Confidence 5677888898888 6899999999999998874 7888999 9999975 44 899999
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--CHHHHh
Q 015393 196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE--LAAVLS 247 (408)
Q Consensus 196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~~ 247 (408)
.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+.. ++.+..
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999986 689999999999976 789999999999999853 444443
No 86
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=8.2e-05 Score=65.59 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=61.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcH----------------HHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHA----------------QALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~----------------~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
+.+.+.+|..|+ ..+++++|+.+|++|... .++ .+++++|.+|.. .| ++.+|+.
T Consensus 38 ~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~ 109 (198)
T 2fbn_A 38 AFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NK------DYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hc------CHHHHHH
Confidence 345566666666 566777777777777653 222 667777777754 23 6677777
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|+++.+. .++.+.+.+|.+|.. ..++++|+.+|++|.+.
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Confidence 77777654 466777777777754 56677777777777654
No 87
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.00019 Score=69.58 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 120 ESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 120 ~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
++|+.+|+++.+. .++.++++||.+|. ..+++++|+.+|+++.+. .++.+.++||.+|.. .| ++++|+
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~ 325 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QG------NIEEAV 325 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT------CHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cC------CHHHHH
Confidence 4444444444432 23444444444444 334444444444444433 244444444444432 22 444455
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 555544443 334444445544433 3344445555554443
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.95 E-value=0.0002 Score=68.62 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHH----------HHHHHHHcCCC
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALY----------SLAVIQFNGSG 183 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~----------~Lg~~y~~G~G 183 (408)
..++|+.+|+++.+. .++.+++.||.+|. ..+++++|+.+|+++.+.. +..+.+ .||.+|.. .|
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~-~g 191 (365)
T 4eqf_A 114 NEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD-SS 191 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------C-CH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh-hh
Confidence 345566666655543 35566666666655 4556666666666665543 111222 22444421 22
Q ss_pred CCCCccCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 184 GSKNDKDLRAGVALCARAAFLG----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 184 v~~~~~d~~kA~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++++|+.+|+++.+.. ++.+++.||.+|.. ..++++|+.+|+++.+..
T Consensus 192 ------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 192 ------VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp ------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred ------hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 6777777777777642 78899999999965 678999999999998753
No 89
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.95 E-value=0.00012 Score=68.81 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHc
Q 015393 118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQFN 180 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~ 180 (408)
..++|+.+|+++.+. ++ ..+.++||.+|. ..+++++|+.+|++|.+. ..+.++++||.+|..
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 468999999999873 33 447899999998 688999999999999841 234588999999975
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 181 GSGGSKNDKDLRAGVALCARAAFL----G----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~~----G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.| ++++|+.+|++|.+. + .+.+++++|.+|.. ..++.++|..+|++|..
T Consensus 209 -~~------~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 209 -DS------RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK---LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -TT------CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHH
T ss_pred -Hh------HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHH
Confidence 34 899999999999763 2 27899999999975 22357999999999985
No 90
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.94 E-value=0.00011 Score=59.05 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.+.+++|.+|.. .| ++++|
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~------~~~~A 103 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MK------DYTKA 103 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-Hh------hHHHH
Confidence 47888999988765 48999999999998 689999999999999876 478999999999975 34 89999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQ 218 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~ 218 (408)
+.+|+++.+. .+..+.+.|+.+|.
T Consensus 104 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 104 MDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999999875 56789999998885
No 91
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00019 Score=66.86 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.+|+++.+. .+..+.+.+|.+|. ..+++++|+.+|+++.+. .++.+++.+|.+|.. .| ++++|
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~------~~~~A 212 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NG------EWKTA 212 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cc------cHHHH
Confidence 45666666666553 34566666666666 456777777777777655 356677777777754 23 67777
Q ss_pred HHHHHHHHh-----------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAF-----------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~-----------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|+++.+ ..++.+.+.||.+|.. ..+.++|+.+|+++.+.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhh
Confidence 777777766 3445677777777754 56777888888887764
No 92
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.94 E-value=0.00019 Score=66.80 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|+.+++++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.+.+.+|.+|.. .| ++++|
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A 225 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GN------RPQEA 225 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC------CHHHH
Confidence 57899999988765 47899999999998 689999999999999876 478999999999976 44 89999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+.
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSN----MSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Confidence 9999999875 578999999999976 67999999999999874
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.93 E-value=5.4e-05 Score=66.82 Aligned_cols=93 Identities=8% Similarity=0.015 Sum_probs=81.6
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE 212 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~ 212 (408)
....|++|..|+ ..+++++|+.+|+++.+ .++.+++++|.+|.. .| ++.+|+.+|++|... .++.+++.
T Consensus 6 ~~~~~~~g~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAA-DKKDWKGALDAFSAVQD-PHSRICFNIGCMYTI-LK------NMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHcC-CChHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCccchHHHHH
Confidence 346788999988 68999999999999974 489999999999975 34 899999999999875 68999999
Q ss_pred HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 213 LGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|.+|.. ..+.++|+.+|++|.+.
T Consensus 77 lg~~~~~----~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 77 RGMLYYQ----TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHh
Confidence 9999976 67999999999999884
No 94
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.92 E-value=0.00016 Score=70.17 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHcC--C---------------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADAG--N---------------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI 177 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G--~---------------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~ 177 (408)
...++|+.+|+++.+.. + ..++++||.+|+ ..+++++|+.+|++|.+. .++.+++++|.+
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34688999999888754 4 589999999998 689999999999999886 489999999999
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHH-HHHHHHHHH
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEG-RRFLVQANA 239 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A-~~w~~kAA~ 239 (408)
|.. .| ++++|+.+|++|.+. .+..+.+.||.+|.. ..+..+| ...|++...
T Consensus 240 ~~~-~g------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 240 HLA-VN------DFELARADFQKVLQLYPNNKAAKTQLAVCQQR----IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHH-TT------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHH-CC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 975 44 899999999999876 689999999999965 4566666 445555543
No 95
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=7.5e-05 Score=56.32 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=67.1
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA 209 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A 209 (408)
++.+++.+|.+|+ ..+++++|+.+|++|.+. .++.++++||.+|.. .| ++++|+.+|+++.+. +++.+
T Consensus 8 ~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~a~~~~p~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCHHH
Confidence 4678899999988 688999999999999876 588999999999975 34 889999999999876 68999
Q ss_pred HHHHHHHHH
Q 015393 210 LRELGHCLQ 218 (408)
Q Consensus 210 ~~~Lg~~y~ 218 (408)
.+.||.+|.
T Consensus 80 ~~~l~~~~~ 88 (91)
T 1na3_A 80 KQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999885
No 96
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.91 E-value=0.00017 Score=62.62 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHH--------cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C-----cHHHHHHHHHHHHc
Q 015393 118 WSESAHRFLKLCAD--------AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S-----HAQALYSLAVIQFN 180 (408)
Q Consensus 118 ~~~~A~~~l~~aAe--------~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G-----~~~A~~~Lg~~y~~ 180 (408)
..++|+.+++++.+ .....+.++||.+|. ..+++++|+.+|++|.+. | ...++++||.+|..
T Consensus 41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 119 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH 119 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 45778888887766 234578899999998 689999999999999876 3 25678999999975
Q ss_pred CCCCCCCccCHHHHHHHHHHHHh----CCCHH----HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 181 GSGGSKNDKDLRAGVALCARAAF----LGHID----ALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~----~G~~~----A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.| ++++|..+|++|.+ .++.. +...||.+|.. ..+.++|+.+|++|.+
T Consensus 120 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 120 -FG------DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARD 175 (203)
T ss_dssp -HT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred -hC------CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 44 89999999999974 35544 46889999976 6799999999999986
No 97
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.91 E-value=5.6e-05 Score=75.28 Aligned_cols=111 Identities=12% Similarity=-0.007 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccC-CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQ-NRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~-d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
..++|+.+|+++.+. .++.+++++|.+|.. .+ ++++|+.+|++|... .++.+++++|.+|.. .| ++.
T Consensus 112 ~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g------~~~ 183 (382)
T 2h6f_A 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LR------DPS 183 (382)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CCT
T ss_pred ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cc------CHH
Confidence 457888888888765 688999999999884 45 599999999999876 488999999999864 34 667
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|+..|++|.+. .+..+++++|.+|.. ..++++|+.+|++|.+.
T Consensus 184 eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 184 QELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKE 229 (382)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Confidence 899999999875 689999999999976 45778899999999875
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=0.00012 Score=62.36 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.++++||.+|+ ..+++++|+.+|++|.+. .++.++++||.+|.. .| +++
T Consensus 25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~ 96 (164)
T 3sz7_A 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MA------DYK 96 (164)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc------CHH
Confidence 3468899999988875 58999999999998 689999999999999876 589999999999975 34 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCL 217 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y 217 (408)
+|+.+|+++.+. .+..+.+.++...
T Consensus 97 ~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 97 GAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999875 5566666665544
No 99
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00018 Score=58.20 Aligned_cols=93 Identities=9% Similarity=-0.109 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+++|.+|+ ..+++++|+.+|++|.+. .++.+++++|.+|.. .| +++
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~------~~~ 89 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VK------EYA 89 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-Hh------CHH
Confidence 3468899999988775 58999999999998 689999999999999876 479999999999975 44 899
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHHHHH
Q 015393 193 AGVALCARAAFLG--------HIDALRELGHCL 217 (408)
Q Consensus 193 kA~~~~~kAA~~G--------~~~A~~~Lg~~y 217 (408)
+|+.+|+++.+.. +..+...|+.+.
T Consensus 90 ~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 90 SALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999998754 455566665554
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.89 E-value=0.00054 Score=62.17 Aligned_cols=111 Identities=13% Similarity=0.023 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHc------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccC
Q 015393 119 SESAHRFLKLCADA------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 119 ~~~A~~~l~~aAe~------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
.++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|++|.+.. ++.+++.||.+|.. .| +
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~------~ 92 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AG------N 92 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------C
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cc------C
Confidence 57888888888875 46788899999888 6789999999999988764 78899999999865 34 7
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+.+|+.+|+++.+. .++.+.+.||.+|.. ..++++|+.+|+++.+..
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence 88999999999874 578899999999976 678899999999998753
No 101
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=4.6e-06 Score=86.01 Aligned_cols=48 Identities=31% Similarity=0.861 Sum_probs=39.9
Q ss_pred CCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhh
Q 015393 327 LRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380 (408)
Q Consensus 327 ~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~ 380 (408)
...|. .|.+. ...+.+|++|+.+.|||++||+.||+ .||..|..+..+
T Consensus 49 ~~~C~--~C~~~---~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~ 96 (490)
T 3n71_A 49 NFVCH--TCFKR---QEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKY 96 (490)
T ss_dssp TTBCT--TTCCB---CSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCcCC--CCCCC---CCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHhc
Confidence 46888 55543 23568999999999999999999999 699999988765
No 102
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=0.00014 Score=59.75 Aligned_cols=110 Identities=16% Similarity=0.054 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHc----CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393 118 WSESAHRFLKLCADA----GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG 181 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~----G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G 181 (408)
..++|+.+++++.+. ++. .+.+.+|.+|. ..+++++|+.+|++|.+. ++ ..+.+++|.+|..
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~- 101 (164)
T 3ro3_A 24 NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL- 101 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-
Confidence 356777777776654 443 48889999998 689999999999998764 22 5688999999965
Q ss_pred CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.| ++++|+.+|+++.+. ++ ..+.+.||.+|.. ..+.++|+.+|++|.+
T Consensus 102 ~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 102 LQ------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred Hh------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 34 899999999999753 33 4578899999965 6799999999999875
No 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.89 E-value=8e-05 Score=72.31 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=90.4
Q ss_pred HHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---------------HHHHHHHHHHHHcCC
Q 015393 122 AHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---------------AQALYSLAVIQFNGS 182 (408)
Q Consensus 122 A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---------------~~A~~~Lg~~y~~G~ 182 (408)
|+.+|+++. ...++.+++++|.+|+ ..+++++|+.+|++|.+.. + +.++++||.+|.. .
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~ 209 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-L 209 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 444444333 3457789999999998 6899999999999998764 4 6899999999975 3
Q ss_pred CCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 183 GGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
| ++.+|+.+|++|.+. .++.+++++|.+|.. ..++++|+.+|++|.+..
T Consensus 210 g------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 210 Q------AFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLY 260 (336)
T ss_dssp T------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred C------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHC
Confidence 4 899999999999886 689999999999976 679999999999998753
No 104
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.88 E-value=0.00036 Score=54.79 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++... .++.+.+.||.+|.. .| +++
T Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~ 94 (125)
T 1na0_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYD 94 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHH
Confidence 3467899999988765 57899999999998 678999999999999876 578899999999975 34 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQ 218 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~ 218 (408)
+|..+|+++.+. .++.+...||.++.
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 95 EAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999875 68899999998875
No 105
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.87 E-value=0.00028 Score=65.10 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=92.4
Q ss_pred cCCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----------CcHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----------SHAQALYSLA 175 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg 175 (408)
....++|+.+|+++.+. ....++++||.+|. ..+++++|+.+|+++.+. ....++++||
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34568889999888765 24568899999998 689999999999999875 2466889999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHhC------C----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 176 VIQFNGSGGSKNDKDLRAGVALCARAAFL------G----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~------G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.+|.. .| ++.+|+++|+++.+. + .+.+.+.||.+|.. ..+.++|+.+|+++.+.
T Consensus 161 ~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 161 LLCQN-QG------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHT-TT------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHH-cC------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 99964 34 899999999999875 2 24578899999976 68999999999999874
No 106
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.87 E-value=0.00048 Score=53.63 Aligned_cols=94 Identities=5% Similarity=-0.191 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+.. ++.+.+++|.+|.. .| ++.
T Consensus 18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~ 89 (118)
T 1elw_A 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LN------RFE 89 (118)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-Hh------hHH
Confidence 3468899999988765 58999999999998 6899999999999998764 78999999999975 34 889
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQ 218 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~ 218 (408)
+|..+|+++.+. +++.+...++.+..
T Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 90 EAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999987 57888888887763
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.86 E-value=0.00014 Score=68.40 Aligned_cols=111 Identities=12% Similarity=0.001 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----Cc----HHHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SH----AQALYSLAVIQF 179 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~----~~A~~~Lg~~y~ 179 (408)
...++|+.+|+++.+. .+ ..+.+++|.+|. ..+++++|+.+|++|.+. ++ +.+.+++|.+|.
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 3578999999998753 22 568999999998 689999999999999832 22 269999999997
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHcCCCccccHHHH-HHHHHHHHH
Q 015393 180 NGSGGSKNDKDLRAGVALCARAAFLG--------HIDALRELGHCLQDGYGVRQNIAEG-RRFLVQANA 239 (408)
Q Consensus 180 ~G~Gv~~~~~d~~kA~~~~~kAA~~G--------~~~A~~~Lg~~y~~G~Gv~~d~~~A-~~w~~kAA~ 239 (408)
. .| ++++|+.+|++|.+.. ...+++++|.+|.. ..+.++| ..+|++|..
T Consensus 208 ~-~~------~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 208 L-DS------RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp H-TT------CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred H-Hh------hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence 5 34 8999999999997631 26789999999976 5678899 888998875
No 108
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.85 E-value=0.00054 Score=65.17 Aligned_cols=117 Identities=17% Similarity=0.031 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC--------
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGS-------- 185 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~-------- 185 (408)
..++|+.+|+++.+. .++.+.+.||.+|. ..+++++|+.+|+++.+.. ++.+++.||.+|.. .|-.
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 156 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQRQACEILR 156 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 356666666666654 46666777776666 4566677777777666553 56666677766643 2200
Q ss_pred -----------------------------------CCccCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHHcCCCcccc
Q 015393 186 -----------------------------------KNDKDLRAGVALCARAAFL--G--HIDALRELGHCLQDGYGVRQN 226 (408)
Q Consensus 186 -----------------------------------~~~~d~~kA~~~~~kAA~~--G--~~~A~~~Lg~~y~~G~Gv~~d 226 (408)
-...++.+|+.+|+++.+. . ++.+.+.||.+|.. ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~ 232 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGE 232 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTC
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCC
Confidence 0001344555555555443 2 57888899999976 678
Q ss_pred HHHHHHHHHHHHHc
Q 015393 227 IAEGRRFLVQANAR 240 (408)
Q Consensus 227 ~~~A~~w~~kAA~~ 240 (408)
+++|+.+|+++.+.
T Consensus 233 ~~~A~~~~~~al~~ 246 (368)
T 1fch_A 233 YDKAVDCFTAALSV 246 (368)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 109
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.00034 Score=67.69 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+.+.++||.+|. ..+++++|+.+|+++... .++.++++||.+|.. .| ++++|+.+|+++.+. .++.++
T Consensus 203 ~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~~ 274 (388)
T 1w3b_A 203 LDAYINLGNVLK-EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QG------LIDLAIDTYRRAIELQPHFPDAY 274 (388)
T ss_dssp HHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCCCCHHHH
Confidence 334444444433 233444444444444332 234444444444432 12 455555555555543 345555
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+.||.+|.. ..++++|+.+|+++.+
T Consensus 275 ~~l~~~~~~----~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 275 CNLANALKE----KGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHH----HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 555555543 3455555555555554
No 110
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.83 E-value=0.00047 Score=54.60 Aligned_cols=95 Identities=14% Similarity=-0.017 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++... .++.+++.+|.+|.. .| ++.
T Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~ 97 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LN------KHV 97 (131)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hC------CHH
Confidence 3467899999988764 58899999999998 689999999999999876 478999999999975 34 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
+|+.+|+++.+. .++.+.+.+|.++..
T Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 98 EAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 999999999875 578999999998853
No 111
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.82 E-value=0.00056 Score=64.85 Aligned_cols=120 Identities=15% Similarity=0.077 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHH---HcCCCCCCCccCH
Q 015393 115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQ---FNGSGGSKNDKDL 191 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y---~~G~Gv~~~~~d~ 191 (408)
.....++|+.+|++ .+++++.+.+|.+|. ..+++++|+.+|+++.+.......++|+..+ ..+.| ++
T Consensus 113 ~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~------~~ 182 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ---GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE------KL 182 (291)
T ss_dssp HTTCHHHHHHHHTT---CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT------HH
T ss_pred HCCCHHHHHHHHhC---CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch------HH
Confidence 34556888888887 688999999999988 6788999999999988775333334443221 12334 78
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHhh
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLSS 248 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~~ 248 (408)
++|+..|+++.+. .++.+.+.+|.+|.. ..++++|...|++|.+. .++.++.+
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999875 678889999999876 67899999999998875 45555544
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.81 E-value=0.00013 Score=71.13 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHHHc--------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA--------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQ 178 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y 178 (408)
....++|+.+|++|.+. +.+.+.++||.+|. ..+++.+|+.+|++|.+. +.+.+.++||.+|
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 34568899999988754 34678999999998 688999999999999753 2366888999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.. .| ++++|.++|++|.+. |+ ..+.++||.+|.. ..+.++|+.+|++|.+
T Consensus 193 ~~-~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 193 DD-FK------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HH-TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HH-hC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 75 34 889999999999873 43 4578899999976 6799999999999987
No 113
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.80 E-value=0.00015 Score=70.64 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=92.9
Q ss_pred cCCHHHHHHHHHHHHHc---------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA---------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQ 178 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~---------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y 178 (408)
....+.|+.++++|.+. +.+.+.++||.+|. ..+++++|+++|++|.+. | ...+.++||.+|
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34467888888888753 23568889999998 689999999999999874 3 356899999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHh-----C--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAF-----L--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~-----~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.. .| ++++|+.+|++|.+ . ..+.+.+.||.+|.. ..+.++|+.+|++|.+.
T Consensus 233 ~~-~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 233 DR-SG------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HH-HT------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HH-CC------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 65 34 89999999999987 3 237899999999976 67999999999999874
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.80 E-value=0.00027 Score=56.05 Aligned_cols=94 Identities=21% Similarity=0.278 Sum_probs=80.3
Q ss_pred HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 015393 136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALR 211 (408)
Q Consensus 136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~ 211 (408)
++++.+|.+|. ..+++++|+.+|+++.+. .++.+.+.+|.+|.. .| ++++|+.+|+++... .++.+.+
T Consensus 2 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHH-HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hc------CHHHHHHHHHHHHHHCCCchHHHH
Confidence 57888999988 578999999999999875 478899999999865 23 889999999999875 5788999
Q ss_pred HHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 212 ELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 212 ~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+|.+|.. ..+.++|+.+|+++....
T Consensus 74 ~l~~~~~~----~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 74 NLGNAYYK----QGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHT----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence 99999965 679999999999998754
No 115
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.79 E-value=0.00015 Score=71.58 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=81.9
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHh----------------c--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAI----------------S--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~----------------~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
+.+++.+|..|+ ..+++++|+.+|++|.+ . .++.++++||.+|.. .| ++++|+.
T Consensus 223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g------~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MS------DWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-cc------CHHHHHH
Confidence 456888999988 68999999999999987 2 467899999999974 34 8999999
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|++|.+. .++.+++.+|.+|.. ..++++|+.+|++|.+..
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 99999986 689999999999976 679999999999998763
No 116
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.79 E-value=0.00027 Score=66.67 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=90.7
Q ss_pred cCCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCL-QNRGSGASLMAKAAIS----SH----AQALYSLAVIQ 178 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y 178 (408)
....++|+.+|++|.+. |+ ..++.+||.+|. .. +++++|+.+|++|.+. ++ ..++.+||.+|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 34568899999988764 55 458899999998 54 9999999999999875 22 46788999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHhCC--CH-------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAFLG--HI-------DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.. .| ++.+|+.+|+++.+.. +. .+++.+|.+|.. ..|+.+|+.+|++|.+.
T Consensus 169 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 169 AL-DG------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HH-TT------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC
T ss_pred HH-hC------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 65 44 8999999999999842 22 267889999975 67999999999998764
No 117
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=0.00016 Score=56.90 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh----C
Q 015393 131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF----L 204 (408)
Q Consensus 131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~----~ 204 (408)
+..++.+.+.||.+|+ ..+++++|+.+|++|.+. .++.++++||.+|.. .| ++++|+.+|++|.+ .
T Consensus 3 ~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LD------RTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhhhcC
Confidence 4578999999999998 689999999999999887 478999999999975 44 88999999999985 4
Q ss_pred CCHHHHHHHHHHHHc
Q 015393 205 GHIDALRELGHCLQD 219 (408)
Q Consensus 205 G~~~A~~~Lg~~y~~ 219 (408)
++..+...|..++..
T Consensus 75 ~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 75 GTQKDLSELQDAKLK 89 (100)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 778888888777753
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.78 E-value=8.8e-05 Score=64.30 Aligned_cols=114 Identities=7% Similarity=-0.045 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 117 NWSESAHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 117 ~~~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
...++|+.+|+++. +.+++.+.+.||.+|. ..+++++|+.+|+++.... ++.....++.+...+.+ +...
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~------~~~~ 92 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA------AESP 92 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH------TSCH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc------ccch
Confidence 34578888888654 5689999999999998 6889999999999987664 45555555555432222 1124
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
|+..|+++.+. +++.+.+.||.+|.. ..+.++|+.+|+++.+..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhC
Confidence 78889998875 689999999999976 678999999999998764
No 119
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.77 E-value=0.00013 Score=63.79 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=78.8
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---------H-----HHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH---------A-----QALYSLAVIQFNGSGGSKNDKDLRAGVALCA 199 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~---------~-----~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~ 199 (408)
.....+++|..++ ..+++++|+.+|.+|.+... . .+++++|.++.. .| ++++|+..|.
T Consensus 10 ~a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lg------r~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LR------SFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CC------CHHHHHHHHH
Confidence 4556778888887 67999999999999987642 2 299999999865 45 8889999999
Q ss_pred HHHhC---------CCHHHH----HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 200 RAAFL---------GHIDAL----RELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 200 kAA~~---------G~~~A~----~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+|.+. .++.++ |++|..|.. -.++++|+..|++|.+.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 99876 677888 999999965 68999999999999874
No 120
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.77 E-value=0.00013 Score=67.09 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=86.4
Q ss_pred HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-
Q 015393 131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL- 204 (408)
Q Consensus 131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~- 204 (408)
+..++++.|.+|..++ ..+++++|+.+|+++.+. ++ +.+++.||.+|.. .| ++.+|+.+|+++.+.
T Consensus 11 ~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFY-NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NK------EYLLAASEYERFIQIY 82 (261)
T ss_dssp CCSSHHHHHHHHHHHH-HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hC------cHHHHHHHHHHHHHHC
Confidence 4578899999999998 689999999999999887 46 8999999999975 34 899999999999986
Q ss_pred ----CCHHHHHHHHHHHHcCC----CccccHHHHHHHHHHHHHc
Q 015393 205 ----GHIDALRELGHCLQDGY----GVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 205 ----G~~~A~~~Lg~~y~~G~----Gv~~d~~~A~~w~~kAA~~ 240 (408)
..+.+++.+|.+|..-. --..+..+|+.+|+++.+.
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 33789999999996410 1157899999999999975
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.77 E-value=0.00027 Score=59.97 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .++.+.++||.+|. ..+++++|+.+|++|... .++.++++||.+|.. .| ++
T Consensus 34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g------~~ 105 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XG------EL 105 (148)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CH
T ss_pred cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cC------CH
Confidence 34568899999988654 69999999999998 689999999999999876 589999999999975 45 89
Q ss_pred HHHHHHHHHHHhC
Q 015393 192 RAGVALCARAAFL 204 (408)
Q Consensus 192 ~kA~~~~~kAA~~ 204 (408)
++|+.+|+++.+.
T Consensus 106 ~~A~~~~~~al~~ 118 (148)
T 2vgx_A 106 AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.76 E-value=0.00021 Score=67.98 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393 118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG 181 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G 181 (408)
..++|+.+|++|.+. |+ ..++.+||.+|. . +++++|+.+|++|.+. |+ ..++++||.+|..
T Consensus 91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~- 167 (307)
T 2ifu_A 91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR- 167 (307)
T ss_dssp CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-
Confidence 457788888887654 44 457889999998 4 9999999999999865 22 5788999999965
Q ss_pred CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
.| ++.+|+.+|++|.+. +. ..+.+.+|.+|.. ..|..+|+.+|+++.
T Consensus 168 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 168 QQ------KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY 222 (307)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT
T ss_pred cC------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Confidence 45 899999999999873 43 3477788888864 468999999999987
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.75 E-value=0.00033 Score=58.44 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+++.||.+|. ..+++++|+.+|++|... .++.++++||.+|.. .| +++
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~ 103 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LG------DLD 103 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHH
Confidence 4468899999988765 58999999999998 689999999999999876 589999999999975 45 899
Q ss_pred HHHHHHHHHHhC
Q 015393 193 AGVALCARAAFL 204 (408)
Q Consensus 193 kA~~~~~kAA~~ 204 (408)
+|+.+|+++.+.
T Consensus 104 ~A~~~~~~al~~ 115 (142)
T 2xcb_A 104 GAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 124
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.74 E-value=5.5e-05 Score=61.09 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 120 ESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 120 ~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
++|+.+|+++.+.+ ++.+.++||.+|. ..+++++|+.+|++|.+. .++.+.++||.+|.. .| +++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~ 78 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LG------RYE 78 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cC------CHH
Confidence 34555555555442 3345556665555 455566666666665554 355566666655543 22 555
Q ss_pred HHHHHHHHHHh
Q 015393 193 AGVALCARAAF 203 (408)
Q Consensus 193 kA~~~~~kAA~ 203 (408)
+|+.+|+++..
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665554
No 125
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00054 Score=56.03 Aligned_cols=94 Identities=14% Similarity=-0.012 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcCC-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 118 WSESAHRFLKLCADAGN-----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~G~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
..++|+.+|+++.+... ..+++++|.+|. ..+++++|+.+|+++... .++.+++++|.+|.. .| +
T Consensus 43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~ 114 (148)
T 2dba_A 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LG------R 114 (148)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HT------C
T ss_pred CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cC------C
Confidence 45789999998887653 789999999998 689999999999999876 489999999999975 34 8
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 191 LRAGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
+++|+.+|+++.+. .+..+...++.+...
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999875 578888888887754
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.71 E-value=0.00057 Score=54.24 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c-------HHHHHHHHHHHHcCCCCC
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H-------AQALYSLAVIQFNGSGGS 185 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~-------~~A~~~Lg~~y~~G~Gv~ 185 (408)
...++|+.+|+++.+. .++.+.+++|.+|. ..+++++|+.+|+++.... + +.+.+++|.+|.. .|
T Consensus 18 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~-- 93 (131)
T 1elr_A 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EE-- 93 (131)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TT--
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hc--
Confidence 3468899999988875 58899999999998 6899999999999998774 3 8899999999975 34
Q ss_pred CCccCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 015393 186 KNDKDLRAGVALCARAAFL-GHIDALRELGHCLQ 218 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~-G~~~A~~~Lg~~y~ 218 (408)
++.+|+.+|+++.+. .++.....|+.++.
T Consensus 94 ----~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 94 ----KYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 899999999999886 46778888887764
No 127
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.71 E-value=4.9e-05 Score=75.59 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc--H---HHHHHHHHHHHcCCCCCCCccCH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--A---QALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--~---~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
.+.|+.+|+++.+. .++.+.+.||.+|. ..+++++|+.+|++|.+... . ...+.+|.++..-.| +.
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 388 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHA-LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK------CE 388 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHH-HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS------CH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHH-HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC------CH
Confidence 45788888888765 47788999999998 68999999999999987642 2 235677777655445 88
Q ss_pred HHHHHHHHHHHhC--------------------------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393 192 RAGVALCARAAFL--------------------------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 192 ~kA~~~~~kAA~~--------------------------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
.+|+.+|++|... .++.+++.||.+|.. ..++++|+.+|++|.+.|..
T Consensus 389 ~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~----~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL----NEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH----HHHCC---------------
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Confidence 8999999998753 457789999999975 67889999999999987654
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00051 Score=56.55 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHcCCCCC
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---------HAQALYSLAVIQFNGSGGS 185 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---------~~~A~~~Lg~~y~~G~Gv~ 185 (408)
...++|+.+|++|.+. .++.+++++|.+|+ ..+++++|+++|++|.+.. ...++++||.+|.. .|
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~-- 97 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QN-- 97 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cC--
Confidence 3568999999999874 68999999999999 6899999999999998753 14588999999864 34
Q ss_pred CCccCHHHHHHHHHHHHhC-CCHHHHHHH
Q 015393 186 KNDKDLRAGVALCARAAFL-GHIDALREL 213 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~-G~~~A~~~L 213 (408)
++.+|+++|++|... -+++....|
T Consensus 98 ----~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 98 ----DLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp ----CHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred ----CHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 899999999999764 455544433
No 129
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.71 E-value=0.00089 Score=67.19 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++... .++.+++.||.+|.. .| ++++
T Consensus 291 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g------~~~~ 362 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QG------KFTE 362 (537)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TT------CHHH
T ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence 357888888887764 57889999999888 678899999999998876 467889999999864 34 7889
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|+.+|+++.+. .++.+.+.+|.+|.. ..+.++|+.+|++|.+.
T Consensus 363 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 363 SEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHc
Confidence 99999998875 678889999999865 57899999999998764
No 130
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00032 Score=54.72 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=65.3
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC---
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH--- 206 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~--- 206 (408)
++++.+.+|..|+ ..+++++|+.+|++|.+. .++.+++++|.+|.. .| ++++|+.+|+++.+. .+
T Consensus 3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LG------EYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHTSCSSTTSH
T ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCccHH
Confidence 4678899999998 789999999999999876 489999999999975 34 899999999999986 35
Q ss_pred ---HHHHHHHHHHHH
Q 015393 207 ---IDALRELGHCLQ 218 (408)
Q Consensus 207 ---~~A~~~Lg~~y~ 218 (408)
..+.+.+|.++.
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 75 AIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667788887774
No 131
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.70 E-value=0.00049 Score=62.07 Aligned_cols=120 Identities=7% Similarity=-0.059 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHc--CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHcC-----
Q 015393 117 NWSESAHRFLKLCADA--GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA---QALYSLAVIQFNG----- 181 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~---~A~~~Lg~~y~~G----- 181 (408)
...++|+..|+++.+. .+ +.+.+.||.+|+ ..+++++|+..|+++.+.. ++ .|+|.+|.+|...
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3468899999988874 23 479999999998 6899999999999998763 33 5899999998641
Q ss_pred -----CC-CCCCccCHHHHHHHHHHHHhC--CCHHHH-----------------HHHHHHHHcCCCccccHHHHHHHHHH
Q 015393 182 -----SG-GSKNDKDLRAGVALCARAAFL--GHIDAL-----------------RELGHCLQDGYGVRQNIAEGRRFLVQ 236 (408)
Q Consensus 182 -----~G-v~~~~~d~~kA~~~~~kAA~~--G~~~A~-----------------~~Lg~~y~~G~Gv~~d~~~A~~w~~k 236 (408)
.+ ......+.++|+..|+++.+. .++.+. +.+|.+|.. .++..+|+..|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVNRVEG 172 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHH
Confidence 01 011123789999999999885 333222 567877766 7899999999999
Q ss_pred HHHcC
Q 015393 237 ANARE 241 (408)
Q Consensus 237 AA~~G 241 (408)
+.+.-
T Consensus 173 ~l~~~ 177 (225)
T 2yhc_A 173 MLRDY 177 (225)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 99863
No 132
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.70 E-value=0.00025 Score=68.85 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHHHcC--CH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcC
Q 015393 116 NNWSESAHRFLKLCADAG--NV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNG 181 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G--~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G 181 (408)
....++|+.+|+++.+.. ++ .+++.||.+|+ ..+++++|+.+|++|.+. ..+.+++.||.+|..
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~- 138 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV- 138 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-
Confidence 345688999999888764 44 58899999998 689999999999999764 356789999999975
Q ss_pred CCCCCCccCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCcccc-----------------HHHHHHHHHH
Q 015393 182 SGGSKNDKDLRAGVALCARAAFL--------GHIDALRELGHCLQDGYGVRQN-----------------IAEGRRFLVQ 236 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~d-----------------~~~A~~w~~k 236 (408)
.| ++.+|+.+|+++.+. ....+.+.||.+|.. ..+ +++|+.+|++
T Consensus 139 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 139 MG------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 34 889999999999764 235588999999965 556 8999999999
Q ss_pred HHH
Q 015393 237 ANA 239 (408)
Q Consensus 237 AA~ 239 (408)
|.+
T Consensus 209 al~ 211 (411)
T 4a1s_A 209 NLK 211 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.69 E-value=0.00016 Score=69.24 Aligned_cols=114 Identities=11% Similarity=-0.058 Sum_probs=93.6
Q ss_pred hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcH----HHHHHHHHHHHcCCCCCCCc
Q 015393 115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHA----QALYSLAVIQFNGSGGSKND 188 (408)
Q Consensus 115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~~~~ 188 (408)
.....++|...|...... +++ ++|.+|.+|+ ..++++.++.+|+++....++ .+.|+||.++.. .|
T Consensus 114 ~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG----- 185 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LA----- 185 (282)
T ss_dssp HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TT-----
T ss_pred HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CC-----
Confidence 344568888888866443 455 9999999988 789999999999988766533 589999999964 56
Q ss_pred cCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 189 KDLRAGVALCARAAFLG-----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++++|+.||+++.... .+++++++|.++.. ..+.++|+.+|+++.+..
T Consensus 186 -~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 186 -LFTEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVALLEWLQTTH 238 (282)
T ss_dssp -CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred -CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 8999999999998665 45799999999976 679999999999998864
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.69 E-value=8.8e-05 Score=79.15 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHH--------H--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC
Q 015393 117 NWSESAHRFLKLCA--------D--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG 184 (408)
Q Consensus 117 ~~~~~A~~~l~~aA--------e--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 184 (408)
...++|+..|+++. + ..++++.+.+|.+|+ ..+++++|+.+|++|.+. .++.+++++|.+|.. .|
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g- 481 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-TG- 481 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HT-
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-cC-
Confidence 34688999999887 3 568899999999998 689999999999999875 699999999999975 34
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 015393 185 SKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVL 246 (408)
Q Consensus 185 ~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~ 246 (408)
++++|+..|++|.+. +++.++++||.+|.. ..++++ +.+|++|.+. .++.+.
T Consensus 482 -----~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 482 -----DYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp -----CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred -----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHH
Confidence 899999999999876 789999999999976 556667 8888888864 344443
No 135
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.69 E-value=0.0016 Score=66.38 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C---c--HHHHHHHHHHHHcCCCCCC
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S---H--AQALYSLAVIQFNGSGGSK 186 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G---~--~~A~~~Lg~~y~~G~Gv~~ 186 (408)
..++|..+|+++.+. .++.+++.||.+|. ..+++++|+++|+++.+. + . +.+++.||.+|.. .|
T Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g--- 530 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LK--- 530 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TT---
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hc---
Confidence 456777777766553 46777777777776 567777777777777664 1 1 5677777777754 34
Q ss_pred CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 187 NDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++++|+++|+++.+. .++.+++.||.+|.. ..+.++|+.+|+++.+.
T Consensus 531 ---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 ---MYDAAIDALNQGLLLSTNDANVHTAIALVYLH----KKIPGLAITHLHESLAI 579 (597)
T ss_dssp ---CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence 677777777777664 367777777777755 56777777777777764
No 136
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0003 Score=70.01 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c------HHHHHHHHHHHHcC--CCCCC
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H------AQALYSLAVIQFNG--SGGSK 186 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~------~~A~~~Lg~~y~~G--~Gv~~ 186 (408)
.++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.... + ..+++.+|.+|..- .|
T Consensus 354 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 429 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE--- 429 (514)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT---
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC---
Confidence 45555555555443 34555566666555 4556666666666655432 2 22666666666541 33
Q ss_pred CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 187 NDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++++|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+..
T Consensus 430 ---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 ---NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ----QEDIDEAITLFEESADLA 479 (514)
T ss_dssp ---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhc
Confidence 566666666666553 456666666666654 456666666666666543
No 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.68 E-value=0.00024 Score=72.07 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=69.7
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---------------HHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---------------AQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---------------~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
.++.+++++|..|+ ..+++.+|+.+|++|.+. .+ ..++++||.+|.. .| ++.+|+
T Consensus 266 ~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g------~~~~A~ 337 (457)
T 1kt0_A 266 EQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LR------EYTKAV 337 (457)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hc------CHHHHH
Confidence 35567777777777 567788888888877764 23 5777788887764 33 677888
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+|.+|.+. .++.+++++|.+|.. ..++++|+.+|++|.+..
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 888887764 577788888888765 567778888888877653
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.67 E-value=0.0014 Score=62.06 Aligned_cols=114 Identities=9% Similarity=0.006 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+..|++.... .++.+.+.+|.+|. ..+++++|+.+|++ .+++++.+.+|.+|.. .| ++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~-~g------~~ 146 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ---GDSLECMAMTVQILLK-LD------RL 146 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH-TT------CH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH-CC------CH
Confidence 34578999999987654 58999999999998 78999999999999 6899999999999975 44 78
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++|..+|+++.+.........|+..+..-.--..++++|+..|+++.+.
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 9999999999876433333444432211000136899999999999986
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.67 E-value=0.00055 Score=60.16 Aligned_cols=95 Identities=19% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHc--CCH----------------HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA--GNV----------------EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV 176 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~----------------~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~ 176 (408)
...++|+.+|+++.+. .++ .+++++|.+|+ ..+++++|+.+|++|... .++.+++++|.
T Consensus 52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3467899999988874 344 89999999998 689999999999999876 48999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 177 IQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
+|.. .| ++++|+.+|+++.+. .+..+...|+.++..
T Consensus 131 ~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 131 ANMY-FG------FLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHH-HT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHH-cc------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 9964 34 899999999999875 689999999999854
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.67 E-value=0.002 Score=60.34 Aligned_cols=112 Identities=10% Similarity=-0.049 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHcCC--------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHc
Q 015393 117 NWSESAHRFLKLCADAGN--------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQFN 180 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G~--------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y~~ 180 (408)
...++|+.+++++.+... ....+.+|.+|. ..+++++|+.+|++|.+. . ...+.++||.+|..
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 346788888887776432 234667777776 577999999999999853 1 25689999999976
Q ss_pred CCCCCCCccCHHHHHHHHHHHHh---C--CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 181 GSGGSKNDKDLRAGVALCARAAF---L--GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~---~--G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.| ++++|+.+|++|.+ . ++ +.+.+++|.+|.. ..++++|+.+|++|.+.
T Consensus 168 -~~------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 168 -NG------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -TT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -cC------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 44 89999999999983 1 22 2689999999976 78999999999999864
No 141
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0013 Score=65.45 Aligned_cols=115 Identities=6% Similarity=-0.119 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---------------------------
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--------------------------- 167 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--------------------------- 167 (408)
...++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+..|+++...+.
T Consensus 53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999988765 58899999999998 67899999999999876653
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHc--CCCCCCCccCH
Q 015393 168 ------------------------------------------------------AQALYSLAVIQFN--GSGGSKNDKDL 191 (408)
Q Consensus 168 ------------------------------------------------------~~A~~~Lg~~y~~--G~Gv~~~~~d~ 191 (408)
+.+.+.+|.++.. ..| ++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 205 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE------SY 205 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT------HH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc------cH
Confidence 6777788887764 234 88
Q ss_pred HHHHHHHHHHHh----------------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 192 RAGVALCARAAF----------------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 192 ~kA~~~~~kAA~----------------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++|+.+|+++.+ ..++.+.+.+|.+|.. ..+.++|+.+|+++.+...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCc
Confidence 999999999988 3457789999999976 6789999999999987654
No 142
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.65 E-value=0.0012 Score=64.83 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
..++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+.+ ++.+++.||.+|.. .| ++++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~ 112 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QG------KLDE 112 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC------CHHH
Confidence 467899999988764 68999999999998 6889999999999998864 78999999999975 34 8899
Q ss_pred HHHHHHHHHhCC--CH---HHHHHH------------HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 194 GVALCARAAFLG--HI---DALREL------------GHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 194 A~~~~~kAA~~G--~~---~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
|+.+|+++.+.. +. .+...| |.+|.. ..+.++|+.+|+++.+..
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 999999998864 33 454444 555654 678899999999988753
No 143
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00051 Score=54.73 Aligned_cols=89 Identities=16% Similarity=0.053 Sum_probs=71.3
Q ss_pred HHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393 121 SAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA 196 (408)
Q Consensus 121 ~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~ 196 (408)
+++.+|+++.+ ..++.+.++||.+|+ ..+++++|+.+|++|... .++.++++||.+|.. .| ++.+|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QG------DRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cC------CHHHHHH
Confidence 45677777765 468999999999998 689999999999999876 478999999999975 34 8899999
Q ss_pred HHHHHHhC----CCHHHHHHHHHHH
Q 015393 197 LCARAAFL----GHIDALRELGHCL 217 (408)
Q Consensus 197 ~~~kAA~~----G~~~A~~~Lg~~y 217 (408)
+|+++.+. ++..+...+...+
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHH
Confidence 99999763 5666655555544
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.64 E-value=0.0006 Score=57.88 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHc--------------------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA--------------------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSL 174 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--------------------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~L 174 (408)
...++|+.+|.++.+. .++.+++++|.+|+ ..+++++|+.++++|.+. .++.+++.+
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3457788888877765 45689999999998 688999999999999876 589999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCH-HHHHHHHHHH
Q 015393 175 AVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHI-DALRELGHCL 217 (408)
Q Consensus 175 g~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~-~A~~~Lg~~y 217 (408)
|.+|.. .| ++.+|+.+|++|.+. +++ .....|+.+.
T Consensus 104 g~~~~~-~g------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 104 AKARIA-AW------KLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHH-Hh------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999965 45 899999999999886 345 3455566555
No 145
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.63 E-value=0.00063 Score=66.00 Aligned_cols=118 Identities=15% Similarity=0.069 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc--------HHHHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--------AQALYSLAVIQF 179 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--------~~A~~~Lg~~y~ 179 (408)
....++|+.+|+++.+. ++ ..+.++||.+|. ..+++++|+.+|++|.+... ..+++.||.+|.
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34467888888877654 33 238889999988 68899999999999876532 678899999996
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393 180 NGSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV 245 (408)
Q Consensus 180 ~G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A 245 (408)
. .| ++++|+.+|+++.+. ++ ..+++.||.+|.. ..|.++|+.+|++|.+.-....
T Consensus 315 ~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 L-LH------EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----IGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp H-TT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCHHH
T ss_pred H-cC------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcc
Confidence 4 34 889999999999764 33 5588899999976 6799999999999998655443
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.62 E-value=0.00027 Score=61.35 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=79.4
Q ss_pred CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
..+.+.+.||.+|. ..+++++|+.+|++|.+. ..+.++++||.+|.. .| ++++|..+|++|.+.
T Consensus 24 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 24 TASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AG------NWDAARRCFLEEREL 95 (203)
T ss_dssp THHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHH
Confidence 45789999999998 689999999999999872 356789999999975 44 899999999999874
Q ss_pred ----C-C----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 205 ----G-H----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 205 ----G-~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
| + ..+.++||.+|.. ..++++|+.+|++|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 4 3 4578899999976 6799999999999985
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.61 E-value=0.00033 Score=57.26 Aligned_cols=80 Identities=16% Similarity=0.070 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+..|+++.+. .++.+.+.||.+|. ..+++++|+..|++|.+. .++.++++||.+|.. .| +++
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g------~~~ 102 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EH------NAN 102 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HH------HHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence 3568899999988764 69999999999998 689999999999999887 489999999999964 34 889
Q ss_pred HHHHHHHHHHhC
Q 015393 193 AGVALCARAAFL 204 (408)
Q Consensus 193 kA~~~~~kAA~~ 204 (408)
+|+.+|+++.+.
T Consensus 103 ~A~~~~~~al~~ 114 (121)
T 1hxi_A 103 AALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.61 E-value=0.00089 Score=62.80 Aligned_cols=111 Identities=12% Similarity=-0.035 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHcC--CHH------HHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHc
Q 015393 117 NWSESAHRFLKLCADAG--NVE------ACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFN 180 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G--~~~------A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~ 180 (408)
...++|..+++++.+.- ++. ..+.+|.+|. ..+++++|+.+|++|.+. ++ ..+..+||.+|..
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 44688999998876632 233 2334777776 678999999999999873 22 4579999999975
Q ss_pred CCCCCCCccCHHHHHHHHHHHHh----C-C----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 181 GSGGSKNDKDLRAGVALCARAAF----L-G----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~----~-G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.| ++++|+.+|++|.+ . + .+.+.++||.+|.. ..++++|+.+|.+|.+
T Consensus 168 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 168 -NG------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE 224 (293)
T ss_dssp -TT------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred -cC------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence 44 89999999999984 1 2 34588999999976 7899999999999986
No 149
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.60 E-value=0.00099 Score=62.44 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.+++.+|.+|.. .| +++
T Consensus 17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~ 88 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QG------KLD 88 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cC------ChH
Confidence 3468899999988765 58999999999998 689999999999999875 578999999999965 34 899
Q ss_pred HHHHHHHHHHhCC-----CHHHHHHH------------HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 193 AGVALCARAAFLG-----HIDALREL------------GHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 193 kA~~~~~kAA~~G-----~~~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|+.+|+++.+.. ++.+.+.+ |.+|.. ..+.++|+.+|+++.+..
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 9999999999874 45566666 566654 678999999999998753
No 150
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.60 E-value=0.0021 Score=60.16 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHhH------------HHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA-----GNVEACYTLG------------MIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI 177 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~-----G~~~A~~~LG------------~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~ 177 (408)
...++|+.+|+++.+. .++.+.+.++ .+|. ..+++++|+.+|+++.+. .++.+.+.+|.+
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4467888888888775 4456666664 4444 578899999999998765 478889999998
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.. .| ++.+|+.+|+++.+. .++.+.+.+|.+|.. ..+.++|+.+|+++.+.
T Consensus 164 ~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 164 FIK-EG------EPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHH-TT------CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHH-CC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 865 34 788999999999876 578899999999976 67899999999998875
No 151
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=0.00014 Score=58.60 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCC
Q 015393 149 LQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGY 221 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~ 221 (408)
.+++++|+.+|++|.+.+ ++.+.++||.+|.. .| ++++|+.+|++|.+. .++.+.+.||.+|..-
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~- 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LG------EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL- 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-
Confidence 467889999999999874 56799999999975 34 899999999999886 6899999999999763
Q ss_pred CccccHHHHHHHHHHHHHc
Q 015393 222 GVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 222 Gv~~d~~~A~~w~~kAA~~ 240 (408)
| +.++|+.+|++|.+.
T Consensus 75 g---~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 75 G---RYEQGVELLLKIIAE 90 (117)
T ss_dssp T---CHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHh
Confidence 3 688999999999876
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.55 E-value=0.0016 Score=52.18 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHc--CCH---HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHcCCCCCC
Q 015393 117 NWSESAHRFLKLCADA--GNV---EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---AQALYSLAVIQFNGSGGSK 186 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~---~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---~~A~~~Lg~~y~~G~Gv~~ 186 (408)
...++|+.+|+++.+. +++ .+.+.+|.+|+ ..+++++|+.+|+++... .+ +.+++.+|.+|.. .|
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g--- 90 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EG--- 90 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT---
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cC---
Confidence 3468899999988773 466 79999999998 689999999999999876 45 8999999999975 45
Q ss_pred CccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393 187 NDKDLRAGVALCARAAFL--GHIDALRELGH 215 (408)
Q Consensus 187 ~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~ 215 (408)
++++|+.+|+++... +++.+...+..
T Consensus 91 ---~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 91 ---KNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp ---CHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 899999999999875 44554444433
No 153
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.55 E-value=0.0024 Score=65.10 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.++|..+++++.+. .++.+.+.||.+|. ..+++++|+++|+++.+. .++.+++.|+.+|.. .| ++++|
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A 426 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYL-CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI-EG------EHDQA 426 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence 45556666555432 45677777777776 567777777777777654 366777777777754 23 67777
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+++|+++.+. .++.+.+.||.+|.. ..++++|+.+|+++.+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 427 ISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 7777777665 356677777777754 55777777777777653
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.54 E-value=0.00036 Score=67.73 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=79.5
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcH-------------------HHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHA-------------------QALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~-------------------~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
.+.+++.+|..|+ ..+++.+|+.+|++|...... .++++||.+|.. .| ++.+|
T Consensus 178 ~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g------~~~~A 249 (338)
T 2if4_A 178 AADRRKMDGNSLF-KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LK------RYDEA 249 (338)
T ss_dssp HHHHHHHHHHHTC-SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TT------CCHHH
T ss_pred HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cC------CHHHH
Confidence 3467889999988 789999999999999876432 378999999974 34 78899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.+|++|.+. .++.+++++|.+|.. ..++++|+.+|++|.+.
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 9999999875 689999999999976 67999999999999764
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.54 E-value=0.0002 Score=73.12 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|++|.+. .++.++++||.+|. ..+++++|+.+|++|.+. .++.++++||.+|.. .| +++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g------~~~ 91 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFR 91 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HT------CHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence 3468899999988775 57899999999998 689999999999999987 488999999999975 34 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHH--HHcCCCccccHHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELGHC--LQDGYGVRQNIAEGRRFLV 235 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~--y~~G~Gv~~d~~~A~~w~~ 235 (408)
+|+++|++|.+. .+..+...|+.+ |.. .++.++|+..|+
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 999999999875 577889999888 543 466777777777
No 156
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.54 E-value=0.00026 Score=68.80 Aligned_cols=111 Identities=9% Similarity=0.015 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCH-------------------HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393 119 SESAHRFLKLCADAGNV-------------------EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI 177 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~-------------------~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~ 177 (408)
.++|+.+|+++.+.... .++++||.+|+ ..+++++|+.+|++|.+. .++.++|++|.+
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a 273 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788888888876533 37899999998 688999999999999876 589999999999
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.. .| ++++|+.+|++|.+. ++..+...|+.+... .....+++..+|.++...
T Consensus 274 ~~~-~g------~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~---~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 274 KAE-LG------QMDSARDDFRKAQKYAPDDKAIRRELRALAEQ---EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHT-TT------CHHHHHHHHHHTTC---------------------------------------
T ss_pred HHH-cC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCC
Confidence 975 45 899999999999775 688899999988643 345566777777776543
No 157
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.54 E-value=0.0007 Score=62.84 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=94.0
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .++.+.+.+|.+|. ..+++++|+.+|+++.+. .++.+++.||.+|.. .| ++
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g------~~ 256 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MS------QY 256 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hc------cH
Confidence 34578999999988765 57899999999998 689999999999999876 478999999999975 34 89
Q ss_pred HHHHHHHHHHHhC--C------------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 192 RAGVALCARAAFL--G------------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
++|+.+|+++.+. . ++.+.+.||.+|.. ..+.++|...|+++.+
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV----MNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH----TTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 9999999999774 3 57899999999976 6788899888876544
No 158
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.00077 Score=66.49 Aligned_cols=95 Identities=15% Similarity=0.033 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHH------------------cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCAD------------------AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV 176 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe------------------~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~ 176 (408)
...++|+..|+++.+ ..++.++++||.+|+ ..+++++|+.+|++|.+. .++.+++++|.
T Consensus 237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 346788888888876 356789999999998 689999999999999986 58999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 177 IQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
+|.. .| ++++|+.+|++|.+. .+..+...|+.++..
T Consensus 316 ~~~~-~g------~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 316 GWQG-LK------EYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH-cc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9975 34 899999999999876 688999999998853
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.49 E-value=0.0012 Score=66.78 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHc--CC---------------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA--GN---------------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV 176 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~---------------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~ 176 (408)
....++|+.+|++|.+. .+ ..++++||.+|+ ..+++++|+.+|++|.+. .++.|+|++|.
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~ 359 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGE 359 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34568899999988764 45 689999999998 689999999999999886 58999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393 177 IQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD 219 (408)
Q Consensus 177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~ 219 (408)
+|.. .| ++++|+.+|++|.+. .+..++..|+.++..
T Consensus 360 a~~~-~g------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 360 AQLL-MN------EFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHH-TT------CHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHH-cc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9975 34 899999999999987 578899999999964
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.49 E-value=0.0002 Score=73.10 Aligned_cols=95 Identities=12% Similarity=-0.052 Sum_probs=82.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+.+++.+|..|+ ..+++++|+++|++|.+. .++.++++||.+|.. .| ++++|+.+|++|.+. .++.++
T Consensus 6 a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 6 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TE------CYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp HTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCCHHHH
Confidence 345667788877 689999999999999876 478999999999975 34 899999999999986 689999
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++||.+|.. ..+.++|+.+|++|.+..
T Consensus 78 ~~lg~~~~~----~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 78 YRRAASNMA----LGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 999999976 689999999999999853
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.48 E-value=0.0015 Score=53.35 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=76.9
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-- 204 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-- 204 (408)
..+++.||.+|. ..+++++|+.+|++|.+. ++ ..++++||.+|.. .| ++.+|+.+|+++.+.
T Consensus 9 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LG------EFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHHH
Confidence 457788999988 678999999999999865 33 2488999999975 34 899999999999763
Q ss_pred --CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 205 --GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 205 --G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++ ..+.+.+|.+|.. ..+.++|+.+|++|.+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 33 5678899999976 67999999999999863
No 162
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.47 E-value=0.001 Score=63.79 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHcC--C----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCC
Q 015393 117 NWSESAHRFLKLCADAG--N----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGS 182 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G--~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~ 182 (408)
...++|+.+|+++.+.. + ..+++.||.+|+ ..+++++|+.+|++|.+. ..+.+++.+|.+|.. .
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L 100 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-c
Confidence 35688999999988764 4 368889999998 689999999999998655 346789999999965 4
Q ss_pred CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccc--------------------HHHHHHHH
Q 015393 183 GGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQN--------------------IAEGRRFL 234 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d--------------------~~~A~~w~ 234 (408)
| ++.+|+.+|++|.+. ++ +.+.+.||.+|.. ..+ +++|+.+|
T Consensus 101 g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 101 G------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp T------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 4 899999999999874 44 5589999999965 455 89999999
Q ss_pred HHHHH
Q 015393 235 VQANA 239 (408)
Q Consensus 235 ~kAA~ 239 (408)
.+|.+
T Consensus 171 ~~al~ 175 (406)
T 3sf4_A 171 EENLS 175 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 163
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.47 E-value=0.0034 Score=60.06 Aligned_cols=112 Identities=16% Similarity=0.059 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHc
Q 015393 117 NWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFN 180 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~ 180 (408)
...++|+.+|+++.+. ++ ..+.++||.+|. ..+++++|+.+|++|.+. ++ ..++++||.+|..
T Consensus 201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 3467888888887654 43 348899999998 689999999999998754 22 6688999999975
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 181 GSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.| ++++|+.+|++|.+. ++ ..+...||.+|.. ..+.++|+.+|++|.+.
T Consensus 280 -~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 280 -LQ------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp -TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred -hC------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 34 899999999999763 44 6688999999976 67999999999999864
No 164
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.47 E-value=0.00077 Score=53.82 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=62.6
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
+++-||.||..++ ..+++..|+.||++|... ..++..++||.+|.. .| ++++|+.++++|...
T Consensus 4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g------~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QG------DLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHhc
Confidence 5678999999998 789999999999999874 357789999999974 45 899999999999875
Q ss_pred --CCHHHHHHHH
Q 015393 205 --GHIDALRELG 214 (408)
Q Consensus 205 --G~~~A~~~Lg 214 (408)
.+..+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 6888888887
No 165
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.45 E-value=0.0022 Score=59.12 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHc--CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCC
Q 015393 117 NWSESAHRFLKLCADA--GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGS 182 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~ 182 (408)
...++|+.+|+++.+. ++ ..+++.||.+|. ..+++++|+.+|++|.+. ..+.+++.||.+|.. .
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~ 96 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L 96 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-c
Confidence 3468899999988875 34 467889999998 688999999999998755 346789999999965 4
Q ss_pred CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccc--------------------HHHHHHHH
Q 015393 183 GGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQN--------------------IAEGRRFL 234 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d--------------------~~~A~~w~ 234 (408)
| ++.+|+.+|+++.+. ++ ..+++.||.+|.. ..+ +++|+.+|
T Consensus 97 g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 97 G------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred c------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 4 899999999998763 44 4488999999965 445 88999999
Q ss_pred HHHHH
Q 015393 235 VQANA 239 (408)
Q Consensus 235 ~kAA~ 239 (408)
++|.+
T Consensus 167 ~~a~~ 171 (338)
T 3ro2_A 167 EENLS 171 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.0012 Score=65.42 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHhHHHHh--hccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 120 ESAHRFLKLCADA--GNVEACYTLGMIRF--YCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 120 ~~A~~~l~~aAe~--G~~~A~~~LG~~y~--~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
++|+.+|+++.+. .++++.+.+|.+++ +..++.++|++.|++|.+. .++.+.++||..+..-.. ...++.+
T Consensus 155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~~~ 231 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE---EGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---------CH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh---hhhHHHH
Confidence 4455555544432 34445554444433 1223344455555554433 244445555544432111 1114556
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|..+|++|... .++.+.+.||.+|.. ..+..+|+.+|.+|.+.
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHh
Confidence 66666666553 466667777777754 56677777777777654
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.44 E-value=0.0018 Score=52.51 Aligned_cols=80 Identities=13% Similarity=-0.033 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+.+++|.+|. ..+++++|+.+|+++... .++.++++||.+|.. .| ++.
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~------~~~ 94 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYD 94 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-Hh------hHH
Confidence 3467899999988764 58899999999998 689999999999999876 589999999999975 34 899
Q ss_pred HHHHHHHHHHhC
Q 015393 193 AGVALCARAAFL 204 (408)
Q Consensus 193 kA~~~~~kAA~~ 204 (408)
+|+.+|+++.+.
T Consensus 95 ~A~~~~~~a~~~ 106 (137)
T 3q49_B 95 EAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 168
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.43 E-value=0.0016 Score=63.73 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .++.+.+.||.+|. ..+++++|+.+|+++.+. .++.+++.||.+|.. .| ++
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~ 227 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-LG------DH 227 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-TT------CH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CH
Confidence 34568899999988765 58999999999998 678999999999999865 689999999999975 34 89
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHH------------HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 192 RAGVALCARAAFL--GHIDALREL------------GHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++|+.+|+++... .+......+ |.+|.. ..++++|+.+|+++.+..
T Consensus 228 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTE 287 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 9999999999875 566666555 777765 678999999999998753
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.43 E-value=0.0019 Score=49.61 Aligned_cols=82 Identities=9% Similarity=-0.073 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCC-CCCCCc
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGS-GGSKND 188 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~-Gv~~~~ 188 (408)
....++|+.+|+++.+. .++.+.+++|.+|. ..+++++|+.+|+++.+.. ++.++++||.+|.. . |
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~----- 91 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEG----- 91 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSS-----
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhC-----
Confidence 34568899999988775 58899999999998 6889999999999999864 78999999999964 3 4
Q ss_pred cCHHHHHHHHHHHHhCC
Q 015393 189 KDLRAGVALCARAAFLG 205 (408)
Q Consensus 189 ~d~~kA~~~~~kAA~~G 205 (408)
++++|+++|+++....
T Consensus 92 -~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 92 -KEVEAEIAEARAKLEH 107 (112)
T ss_dssp -CSHHHHHHHHHHGGGC
T ss_pred -CHHHHHHHHHHHhhcc
Confidence 7889999999998753
No 170
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.42 E-value=0.0019 Score=64.72 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=97.8
Q ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 116 NNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
....++|+.+|+++.+.. ++.+.+.||.+|. ..+++++|+.+|+++.+. .++.+++.+|.+|.. .| ++.
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~ 327 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQ------DYK 327 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cC------CHH
Confidence 345688999999887653 4789999999988 688999999999999876 578999999999974 34 899
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
+|+.+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+..
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 999999999875 578999999999976 689999999999998763
No 171
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.41 E-value=0.0005 Score=59.39 Aligned_cols=113 Identities=8% Similarity=-0.082 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 116 NNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
....++|+.+|+++.+.. ++.....++.+......+...|+.+|++|.+. +++.+.++||.+|.. .| +++
T Consensus 53 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g------~~~ 125 (176)
T 2r5s_A 53 TKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VG------RDE 125 (176)
T ss_dssp TTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred CCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc------cHH
Confidence 345688999999876554 56666666655442222233579999999876 589999999999965 45 899
Q ss_pred HHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 193 AGVALCARAAFLG----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 193 kA~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
+|+.+|+++.+.. ++.+.+.||.+|.. ..+.++|+..|+++..
T Consensus 126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 126 EALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence 9999999999874 36699999999965 5577789999998864
No 172
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.40 E-value=0.00064 Score=64.11 Aligned_cols=114 Identities=9% Similarity=-0.013 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+..|+++.+ .+++++.+.||.+|. ..+++++|+.+|+++... .+......++..+.. .+ +.
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~-~~------~~ 201 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX-QA------AD 201 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH-HH------TS
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh-hc------cc
Confidence 3456888999987754 579999999999998 688999999999988654 233344444444432 22 23
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
..|+..|+++... +++++.+.||.+|.. ..+.++|+..|+++....
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXD 249 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcc
Confidence 3678888888765 789999999999976 678999999999998853
No 173
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.39 E-value=0.0011 Score=52.72 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHH
Q 015393 154 SGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAE 229 (408)
Q Consensus 154 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~ 229 (408)
+++.+|+++.+. .++.++++||.+|.. .| ++.+|+.+|+++... .++.+.+.||.+|.. ..+.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HE------QFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHH
Confidence 578899998876 589999999999965 34 899999999999875 678999999999976 689999
Q ss_pred HHHHHHHHHHc
Q 015393 230 GRRFLVQANAR 240 (408)
Q Consensus 230 A~~w~~kAA~~ 240 (408)
|+.+|++|.+.
T Consensus 72 A~~~~~~al~~ 82 (115)
T 2kat_A 72 ARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999863
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.39 E-value=0.0015 Score=60.18 Aligned_cols=111 Identities=16% Similarity=0.054 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393 118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG 181 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G 181 (408)
..++|+.+++++.+. ++ ..+.+++|.+|. ..+++++|+.+|+++.+. ++ ..+++.+|.+|..
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 275 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL- 275 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-
Confidence 456777777766543 33 237777888777 567888888888887643 22 5677788888754
Q ss_pred CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.| ++++|..+|++|.+. ++ ..+.+.||.+|.. ..+.++|..+|++|.+.
T Consensus 276 ~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 276 LQ------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHC
T ss_pred hc------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 34 778888888887653 33 4477778888865 56888888888888764
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.32 E-value=0.00051 Score=60.00 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhc-c--------CCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc-CCCC
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYC-L--------QNRGSGASLMAKAAISS--HAQALYSLAVIQFN-GSGG 184 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~-~--------~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~-G~Gv 184 (408)
.++|+..++++.+. .++++++++|.++... . +.+++|+..|++|.+.. +++|+|+||..|.. |.-+
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 56788888888765 6999999999998821 1 23679999999999885 89999999999964 2100
Q ss_pred CCC---ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393 185 SKN---DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA 243 (408)
Q Consensus 185 ~~~---~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~ 243 (408)
+.. ..++++|+++|++|.+..--. .++.++++...+|.+.+..
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~----------------~~y~~al~~~~ka~el~~~ 143 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDN----------------THYLKSLEMTAKAPQLHAE 143 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTC----------------HHHHHHHHHHHTHHHHHHH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHhCHhccCc
Confidence 000 017899999999998863211 1334556666666665443
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.00036 Score=60.95 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCC---CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CC
Q 015393 150 QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGS---KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD-GY 221 (408)
Q Consensus 150 ~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~---~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~ 221 (408)
+.+++|+..|++|.+. +++++++++|.++..-.... .....+++|+..|++|.+. .+.+|+++||.+|.. |.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3467899999999877 59999999999986421100 0011467999999999987 589999999999964 32
Q ss_pred Cccc------cHHHHHHHHHHHHHcC
Q 015393 222 GVRQ------NIAEGRRFLVQANARE 241 (408)
Q Consensus 222 Gv~~------d~~~A~~w~~kAA~~G 241 (408)
-++. ++++|+.+|++|.+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhC
Confidence 2333 8999999999999864
No 177
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.29 E-value=0.0033 Score=59.36 Aligned_cols=109 Identities=5% Similarity=-0.039 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHH-HHHHHHHHHHcCCCCCCCccCHHH
Q 015393 120 ESAHRFLKLCADA---GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQ-ALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 120 ~~A~~~l~~aAe~---G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~-A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
++|...|++|.+. +++.+.+.+|.++. ..+++++|...|++|.+.. ++. +++++|.++.. .| ++++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~------~~~~ 152 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AE------GIKS 152 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HH------CHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hc------CHHH
Confidence 5666666666652 45566666666665 4566666666666666643 343 66666666543 22 5666
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 194 GVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 194 A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
|...|++|.+.. +......++.+... ..++.++|+..|++|.+
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~~~A~~~~~~al~ 197 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAFKIFELGLK 197 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Confidence 666666666643 23333333333211 12466667777776665
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.0014 Score=51.40 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=56.6
Q ss_pred cCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 165 SSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 165 ~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
-.++.+.++||.+|.. .| ++++|+.+|+++.+. .++.+++.||.+|.. ..+.++|+.+|++|.+.
T Consensus 4 p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLK-HD------NASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 3578999999999975 34 899999999999886 689999999999976 78999999999999853
No 179
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.17 E-value=0.0021 Score=57.75 Aligned_cols=99 Identities=12% Similarity=-0.040 Sum_probs=80.2
Q ss_pred CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC
Q 015393 134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH 206 (408)
Q Consensus 134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~ 206 (408)
++++.|.+|..++ ..+++++|+.+|+++.... + ..+++.||.+|.. .| ++.+|+..|+++.+. ++
T Consensus 3 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NA------DLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHHCcCC
Confidence 5678999999988 6899999999999998752 2 5799999999975 34 899999999999875 33
Q ss_pred H---HHHHHHHHHHHcC--------------CCccccHHHHHHHHHHHHHc
Q 015393 207 I---DALRELGHCLQDG--------------YGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 207 ~---~A~~~Lg~~y~~G--------------~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+ .|++.+|.+|..- .--..+.++|+..|+++.+.
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 3 4899999998641 01145899999999999875
No 180
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.12 E-value=0.0053 Score=57.92 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHcC--CHH-HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 117 NWSESAHRFLKLCADAG--NVE-ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G--~~~-A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
...++|...|+++.+.. ++. +.+++|.++. ..+++++|...|++|.+.. +......++.+.....| ++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~------~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC------CH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC------CH
Confidence 34688999999998754 565 8999999887 5788999999999999864 44555555555433334 88
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
++|...|++|.+. .++.+...++.++.. ..++++|+.+|++|...
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 9999999999874 688999999998865 46899999999999985
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.03 E-value=0.0036 Score=54.65 Aligned_cols=80 Identities=13% Similarity=-0.017 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHcC---------CH-----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHH--
Q 015393 117 NWSESAHRFLKLCADAG---------NV-----EACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQAL-- 171 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G---------~~-----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~-- 171 (408)
...++|+..|++|.+.. +. .+++++|.++. ..+++++|+.+|.+|.+. .++.|+
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 34688999999887654 22 39999999988 678999999999999977 688899
Q ss_pred --HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393 172 --YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 172 --~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~ 204 (408)
|++|..|. +.| ++++|+..|++|.+.
T Consensus 104 ~~~~rG~aL~-~lg------r~eEAl~~y~kAlel 131 (159)
T 2hr2_A 104 AVYSRALALD-GLG------RGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHH-HTT------CHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHH-HCC------CHHHHHHHHHHHHhc
Confidence 99999995 456 899999999999764
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.99 E-value=0.0055 Score=45.63 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQF 179 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~ 179 (408)
...++|+.+|+++.+. .++.+.++||.+|. ..+++++|+.+|+++.+. +++.++++||.+|.
T Consensus 23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3467899999988775 58999999999998 689999999999999876 68999999999985
No 183
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.94 E-value=0.0093 Score=57.16 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHH----cCCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC----------cHHHHHHHHHHH
Q 015393 117 NWSESAHRFLKLCAD----AGNV----EACYTLGMIRFYCLQNRGSGASLMAKAAISS----------HAQALYSLAVIQ 178 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe----~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G----------~~~A~~~Lg~~y 178 (408)
...++|..+++++.+ .|++ .+.++||.+|. ..+++.+|+.+|+++.+.. ...++++||.+|
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 346788888887764 4555 34788999988 6899999999999987642 345778899988
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 179 FNGSGGSKNDKDLRAGVALCARAAFL----G---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.. .| ++++|..+|+++.+. | ...+++.||.++.. ..|.++|..+|+++...
T Consensus 146 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 146 WA-WA------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENL 203 (373)
T ss_dssp HH-TT------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HH-hc------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 64 35 899999999999763 2 24678889999865 78999999999999753
No 184
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.89 E-value=0.011 Score=56.77 Aligned_cols=112 Identities=20% Similarity=0.137 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHc---CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----CcH----HHHHHHHHHHHcC
Q 015393 117 NWSESAHRFLKLCADA---GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SHA----QALYSLAVIQFNG 181 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~---G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~~----~A~~~Lg~~y~~G 181 (408)
...++|..+++++.+. +++ .+.+.+|.+|. ..+++++|..+|++|... |++ .+.++||.+|..
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 105 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA- 105 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 3467888888887764 333 26788898887 679999999999998753 443 457889999865
Q ss_pred CCCCCCccCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 182 SGGSKNDKDLRAGVALCARAAFL----G------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 182 ~Gv~~~~~d~~kA~~~~~kAA~~----G------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.| ++.+|..+|+++... | ...++..||.+|.. ..++++|..+|++|.+.
T Consensus 106 ~G------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 106 QG------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV 164 (373)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence 45 899999999999763 2 24567789999865 57999999999999864
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.87 E-value=0.0074 Score=56.57 Aligned_cols=80 Identities=13% Similarity=-0.033 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
...++|+.+|+++.+. .++.+++++|.+|. ..+++++|+.+|++|.+. +++.++++||.+|.. .| +++
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~ 89 (281)
T 2c2l_A 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYD 89 (281)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence 3468899999988764 58999999999998 689999999999999886 589999999999975 44 899
Q ss_pred HHHHHHHHHHhC
Q 015393 193 AGVALCARAAFL 204 (408)
Q Consensus 193 kA~~~~~kAA~~ 204 (408)
+|+.+|++|.+.
T Consensus 90 ~A~~~~~~al~l 101 (281)
T 2c2l_A 90 EAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 186
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.76 E-value=0.01 Score=50.48 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHhHHH-HhhccCCH--HHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393 118 WSESAHRFLKLCAD--AGNVEACYTLGMI-RFYCLQNR--GSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD 190 (408)
Q Consensus 118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~-y~~~~~d~--~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d 190 (408)
..++|+.+|+++.+ ..++.+.+.+|.+ |+ ..+++ ++|+.+|+++.+. .++.++++||.+|.. .| +
T Consensus 59 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~ 130 (177)
T 2e2e_A 59 DYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QA------N 130 (177)
T ss_dssp CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------C
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc------c
Confidence 46789999998865 4689999999999 65 56777 9999999999876 578999999999976 34 8
Q ss_pred HHHHHHHHHHHHhCC
Q 015393 191 LRAGVALCARAAFLG 205 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G 205 (408)
+++|+.+|+++.+..
T Consensus 131 ~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 131 YAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998863
No 187
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.0033 Score=48.23 Aligned_cols=64 Identities=9% Similarity=-0.055 Sum_probs=48.4
Q ss_pred HHhHHHHhhccCCHHHHHHHHHHHHhc--CcHH-HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393 139 YTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQ-ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL 210 (408)
Q Consensus 139 ~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~-A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~ 210 (408)
+.+|..|+ ..+++++|+.+|+++.+. .++. +++++|.+|.. .| ++++|+.+|+++.+. .++.+.
T Consensus 4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LG------DWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcCCCcHHHH
Confidence 56677776 578888999999888776 4677 88889988864 33 788899999988875 345554
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.50 E-value=0.058 Score=61.68 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393 120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA 199 (408)
Q Consensus 120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~ 199 (408)
++|..++++. .++.+++.||..++ ..+++++|++.|.+| +++.+++.++.++.. .| +++.|++||.
T Consensus 1093 drAiE~Aerv---n~p~vWsqLAKAql-~~G~~kEAIdsYiKA---dD~say~eVa~~~~~-lG------kyEEAIeyL~ 1158 (1630)
T 1xi4_A 1093 DRAYEFAERC---NEPAVWSQLAKAQL-QKGMVKEAIDSYIKA---DDPSSYMEVVQAANT-SG------NWEELVKYLQ 1158 (1630)
T ss_pred HHHHHHHHhc---CCHHHHHHHHHHHH-hCCCHHHHHHHHHhc---CChHHHHHHHHHHHH-cC------CHHHHHHHHH
Confidence 3444444433 67889999999988 688999999999997 899999999999965 44 7889999997
Q ss_pred HHHhC-----------------------------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 200 RAAFL-----------------------------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 200 kAA~~-----------------------------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
+|-.. .+....+.+|..|+. ..++++|..+|.+|-
T Consensus 1159 mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A 1159 MARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNVS 1222 (1630)
T ss_pred HHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhh
Confidence 76532 223345566666655 778889999998874
No 189
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.47 E-value=0.006 Score=57.33 Aligned_cols=112 Identities=10% Similarity=-0.076 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
....++|+.+|+++.+. .+......++..+. ..++...|+..|++|.+. +++.+.++||.+|.. .| ++
T Consensus 164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~-~g------~~ 235 (287)
T 3qou_A 164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL-XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ-VG------RN 235 (287)
T ss_dssp TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH-hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH-cc------cH
Confidence 44578899999877543 23334444444444 445566789999998876 589999999999975 34 88
Q ss_pred HHHHHHHHHHHhC--CC--HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 192 RAGVALCARAAFL--GH--IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~--~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
++|+..|+++... ++ ..+...|+.+|.. ..+..+|..+|+++..
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAA----LGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence 9999999999885 45 8899999999965 4566789999998865
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.012 Score=45.32 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
++.+++.+|.+|.. .| ++.+|+.+|++|.+. .++.+.+++|.+|.. ..+.++|+.+|++|.+..
T Consensus 3 ~~~~~~~~g~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK-QG------LYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHT-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence 46788999999975 34 899999999999875 689999999999976 679999999999999864
No 191
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=96.37 E-value=0.0018 Score=45.35 Aligned_cols=44 Identities=30% Similarity=0.479 Sum_probs=36.2
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHH
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVL 103 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~ 103 (408)
...|..||+|++..||+.+. +.|+..+..+||.|+.+..++.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~-----~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC-----LPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC-----GGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CCCHHHCCHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhCChHHH
Confidence 45689999999999999884 679999999999999998776543
No 192
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.15 E-value=0.023 Score=44.97 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237 (408)
Q Consensus 167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA 237 (408)
.+.-+|.||..++.- | ++..|+.||++|.+. ..+.....||.+|.. ..|+++|+.++++|
T Consensus 4 sa~dc~~lG~~~~~~-~------~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTE-A------DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-c------chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence 467899999999762 3 899999999999873 346788999999986 67899999999999
Q ss_pred HHcC--CHHHHh
Q 015393 238 NARE--LAAVLS 247 (408)
Q Consensus 238 A~~G--~~~A~~ 247 (408)
.... +..+..
T Consensus 73 l~l~P~~~~~~~ 84 (104)
T 2v5f_A 73 LELDPEHQRANG 84 (104)
T ss_dssp HHHCTTCHHHHH
T ss_pred HhcCCCCHHHHh
Confidence 8653 444433
No 193
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.90 E-value=0.12 Score=59.18 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
.+..++|+.+|+++- -+..|. ..++. ..+++++|++++++. ..+..+++||..++.. | .+++|+
T Consensus 1062 lglyEEAf~IYkKa~--~~~~A~---~VLie-~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~-G------~~kEAI 1125 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD--VNTSAV---QVLIE-HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQK-G------MVKEAI 1125 (1630)
T ss_pred CCCHHHHHHHHHHcC--CHHHHH---HHHHH-HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC-C------CHHHHH
Confidence 344789999999873 222222 22232 467899999999977 6799999999999864 4 789999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 196 ALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 196 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
..|.+| +++.+++++|.++.. ..++++|++||.+|-+..
T Consensus 1126 dsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1126 DSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Confidence 999997 999999999999977 779999999999988654
No 194
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.86 E-value=0.07 Score=54.10 Aligned_cols=47 Identities=6% Similarity=-0.063 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
+.++|...|++|.+. .++.....++.++.. ..+.++|+.+|++|...
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTS 454 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHS
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhc
Confidence 445555555555443 345555555555432 34555555555555543
No 195
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.72 E-value=0.033 Score=53.04 Aligned_cols=83 Identities=18% Similarity=0.101 Sum_probs=66.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCC
Q 015393 113 IKANNWSESAHRFLKLCADAGNV----EACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSG 183 (408)
Q Consensus 113 ~~~~~~~~~A~~~l~~aAe~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~G 183 (408)
+..+.| ++|+.+|+.+....++ .+.|+||.++. ..+++++|+.||+++.... .+++++++|.++.. .|
T Consensus 146 ~~~~r~-~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lG 222 (282)
T 4f3v_A 146 GAAERW-TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QG 222 (282)
T ss_dssp HHTTCH-HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HT
T ss_pred HHcCCH-HHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cC
Confidence 334444 7788888866655544 48999999998 6899999999999998665 45799999999964 45
Q ss_pred CCCCccCHHHHHHHHHHHHhC
Q 015393 184 GSKNDKDLRAGVALCARAAFL 204 (408)
Q Consensus 184 v~~~~~d~~kA~~~~~kAA~~ 204 (408)
+.++|...|+++...
T Consensus 223 ------r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 223 ------NESAAVALLEWLQTT 237 (282)
T ss_dssp ------CHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHhc
Confidence 788999999999775
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.66 E-value=0.1 Score=45.02 Aligned_cols=87 Identities=7% Similarity=-0.011 Sum_probs=65.8
Q ss_pred HHHHHHHHHHH--cCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393 121 SAHRFLKLCAD--AGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGSGGSKNDKDLR 192 (408)
Q Consensus 121 ~A~~~l~~aAe--~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~~~~d~~ 192 (408)
.+..-|....+ .-+.++.|++|..+.. ...+..+|+.+|+...+.. +.++.|+||+.|.. .| |+.
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~------~Y~ 88 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LK------EYE 88 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TS------CHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-cc------CHH
Confidence 34445555555 3478999999999883 2346779999999999887 47899999999954 44 999
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHH
Q 015393 193 AGVALCARAAFL--GHIDALRELG 214 (408)
Q Consensus 193 kA~~~~~kAA~~--G~~~A~~~Lg 214 (408)
+|.+|++++.+. +|..|+.-.-
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999875 5666665443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.62 E-value=0.16 Score=52.04 Aligned_cols=111 Identities=8% Similarity=0.070 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHc-------CCH---HHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----C--c---HHHHHHHH
Q 015393 116 NNWSESAHRFLKLCADA-------GNV---EACYTLGMIRFYCLQNRGSGASLMAKAAIS-----S--H---AQALYSLA 175 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~-------G~~---~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G--~---~~A~~~Lg 175 (408)
....++|+.+++++.+. .|+ ..+.+||.+|. ..+++++|..+|++|.+- | | +.++++||
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34468888888888764 344 58899999998 689999999999998754 2 4 44889999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHh-------CCCHH---HHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393 176 VIQFNGSGGSKNDKDLRAGVALCARAAF-------LGHID---ALRELGHCLQDGYGVRQNIAEGRRFLVQAN 238 (408)
Q Consensus 176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-------~G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA 238 (408)
.+|.. .| ++++|..+|++|.+ ..|+. .+..|+.++.. .+-+.+|...|.+|-
T Consensus 401 ~~~~~-~G------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 401 LTNWH-AG------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHH-CC------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 99976 35 88999999999976 24554 44566666643 344677888887773
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.53 E-value=0.063 Score=41.94 Aligned_cols=67 Identities=15% Similarity=-0.083 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHc-CCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 167 HAQALYSLAVIQFN-GSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 167 ~~~A~~~Lg~~y~~-G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+++.++.+|.++.. +.|. ...+|..+|++|... .++.|.+.||..++. ..|+.+|+.+|++..++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~-----~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQA-----MTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTC-----CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence 45555566655532 2221 334666666666554 566666666666655 5666666666666665443
No 199
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.28 E-value=0.19 Score=50.88 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHHH--cCCHHHHHHhHHHHhh------ccCCHH-------HHHHHHHHHHh---cCcHHHHHHHHHHHHcCC
Q 015393 121 SAHRFLKLCAD--AGNVEACYTLGMIRFY------CLQNRG-------SGASLMAKAAI---SSHAQALYSLAVIQFNGS 182 (408)
Q Consensus 121 ~A~~~l~~aAe--~G~~~A~~~LG~~y~~------~~~d~~-------~A~~~~~kAA~---~G~~~A~~~Lg~~y~~G~ 182 (408)
.++..|++|.. ..++++++.+|.++.. ..++.+ +|+..|++|.. -.++...+.++.++.. .
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-R 334 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-c
Confidence 56667777765 4688888888888773 146655 88888888875 2578888888888764 3
Q ss_pred CCCCCccCHHHHHHHHHHHHhCC--CH-HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 183 GGSKNDKDLRAGVALCARAAFLG--HI-DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~G--~~-~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
| ++++|...|+++.+.. ++ .+...++.++.. ..++++|+..|.+|.+.
T Consensus 335 g------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 335 M------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKARED 385 (530)
T ss_dssp T------CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTC
T ss_pred C------CHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 4 7788888888888764 33 467777777643 35677788888887764
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.25 E-value=0.1 Score=49.92 Aligned_cols=100 Identities=13% Similarity=-0.027 Sum_probs=79.7
Q ss_pred cCCHHHHHHhHHHHhh---c-c------CCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcC----CCCCCCccCHHH
Q 015393 132 AGNVEACYTLGMIRFY---C-L------QNRGSGASLMAKAAISS----HAQALYSLAVIQFNG----SGGSKNDKDLRA 193 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~---~-~------~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G----~Gv~~~~~d~~k 193 (408)
..++++.|.+|..... . . .....+...+++|.+.. +..|+..||.+|..= .| |.++
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG------d~ek 222 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG------GMEK 222 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC------CHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC------CHHH
Confidence 3468899999988762 1 1 34568999999999885 466999999999772 34 8899
Q ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFL---GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|.++|++|.+. |++++.+.+|..|.. ..+|.+++.+++++|...
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~---~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCI---PLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHcC
Confidence 99999999885 359999999999843 137999999999999873
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.14 E-value=0.1 Score=40.69 Aligned_cols=68 Identities=13% Similarity=-0.019 Sum_probs=52.3
Q ss_pred cCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393 132 AGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH 206 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~ 206 (408)
..+++..+.+|.++++ ......+|..+|++|... .++.|.+.||.+++. .| ++.+|+.+|++..++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g------~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SF------RFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCC
Confidence 3577888888888763 234468899999988766 588899999998876 34 88899999998887653
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.13 E-value=0.096 Score=52.76 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHhc-----C--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-----CC--CHH---
Q 015393 149 LQNRGSGASLMAKAAIS-----S--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-----LG--HID--- 208 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~-----G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-----~G--~~~--- 208 (408)
.+++++|+.+|+++.+. | | ...+.+||.+|.. .| ++++|..+|++|.+ .| |++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g------~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQ------DWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hc------CHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 46889999999999764 2 3 4578899999975 45 89999999999986 34 544
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.+++||.+|.. ..++++|..+|++|.+
T Consensus 384 ~l~nLa~~~~~----qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMG----LENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence 78999999976 6689999999999987
No 203
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.82 E-value=0.17 Score=43.56 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCcc
Q 015393 151 NRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG----HIDALRELGHCLQDGYGVR 224 (408)
Q Consensus 151 d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~ 224 (408)
+...+.+-|.++...| +.+++|++|..+..- . ...|+.+++.+|+...+.. +.++.|+||..|.. .
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S-~---~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRS-K---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----L 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-S---SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----c
Confidence 3456677788777754 689999999999762 2 3448899999999999887 36799999999976 7
Q ss_pred ccHHHHHHHHHHHHHcC--CHHHHh
Q 015393 225 QNIAEGRRFLVQANARE--LAAVLS 247 (408)
Q Consensus 225 ~d~~~A~~w~~kAA~~G--~~~A~~ 247 (408)
+|+.+|++|+.++.+.. +..|..
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 89999999999998754 455544
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.50 E-value=0.083 Score=40.02 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393 171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID-ALRELGHCLQDGYGVRQNIAEGRRFLVQANARE 241 (408)
Q Consensus 171 ~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~-A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G 241 (408)
.+++|..|.. .| ++.+|+.+|+++.+. .++. +.+.+|.+|.. ..+.++|+.+|++|.+..
T Consensus 3 ~~~~a~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 3 QLKTIKELIN-QG------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN 65 (99)
T ss_dssp THHHHHHHHH-HT------CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 3567777753 23 899999999999875 5788 99999999976 679999999999999754
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.86 E-value=0.29 Score=49.02 Aligned_cols=81 Identities=12% Similarity=0.016 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHHHHHHhc-----C--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-----C--CCHH--
Q 015393 148 CLQNRGSGASLMAKAAIS-----S--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-----L--GHID-- 208 (408)
Q Consensus 148 ~~~d~~~A~~~~~kAA~~-----G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-----~--G~~~-- 208 (408)
.++++++|+.+|+++.+. | | ...+.+||.+|.. .| ++++|..+|+++.+ . .|+.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g------~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LG------LLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 467999999999999865 2 3 4588899999965 35 89999999999976 2 3444
Q ss_pred -HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 209 -ALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 209 -A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.+++||.+|.. ..++++|..+|++|.+
T Consensus 372 ~~l~nLa~~~~~----~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLH----QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 78999999977 6689999999999987
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.56 E-value=0.22 Score=47.95 Aligned_cols=110 Identities=5% Similarity=-0.031 Sum_probs=76.1
Q ss_pred HHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393 122 AHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SHAQALYSLAVIQFNGSGGSKNDKDLRAGV 195 (408)
Q Consensus 122 A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~ 195 (408)
++..|++.++. .+..+.+.||.+|. ..+|+++|++|+.+.... ++.+++..++.+|.. .| +..+|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~------r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NN------NVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CC------CHHHHH
Confidence 55666655553 46677788888888 578999999999988765 478888888888876 33 677888
Q ss_pred HHHHHHHhCCC------HHHHHHHHHH--HH-cCCCccccHHHHHHHHHHHHHcCC
Q 015393 196 ALCARAAFLGH------IDALRELGHC--LQ-DGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 196 ~~~~kAA~~G~------~~A~~~Lg~~--y~-~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
+.+++..+... -.....|+.. .. .|. .+..+|+..|++.++...
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~---~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK---ETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC---STTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhCC
Confidence 88887765543 3445555533 21 121 357788888888877643
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.83 Score=44.01 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHc----CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCC
Q 015393 119 SESAHRFLKLCADA----GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGS 182 (408)
Q Consensus 119 ~~~A~~~l~~aAe~----G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~ 182 (408)
.++|..+++++... ++. .....+|.++. ..+++++++.+++++... +......+||.+|.. .
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~ 148 (434)
T 4b4t_Q 71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ-VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-K 148 (434)
T ss_dssp HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS-CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-c
Confidence 46677777655431 221 23344565554 567888888888888754 235677788888863 4
Q ss_pred CCCCCccCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 183 GGSKNDKDLRAGVALCARAAFL--------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
| ++.+|..++.++... ..++++..+|.+|.. .+|+.+|..+|++|...
T Consensus 149 g------~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 149 K------QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTA 204 (434)
T ss_dssp T------CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred c------ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHH
Confidence 4 788888888888772 235677788888865 88888888888888765
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=92.99 E-value=0.74 Score=43.97 Aligned_cols=110 Identities=12% Similarity=0.038 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHc--CCHHHHHHhHHHHhhccC-----CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 121 SAHRFLKLCADA--GNVEACYTLGMIRFYCLQ-----NRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 121 ~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~-----d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
+++.++.++.+. .|..|.+..+.+...... -++++++++.++... ++..|.+.++.++..... ..
T Consensus 164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~------~~ 237 (306)
T 3dra_A 164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR------SI 237 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC------CG
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC------Ch
Confidence 667777766654 477788777777663211 167888888888765 578888888888765432 33
Q ss_pred HHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFLG-----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.....++.+..+.+ ++.|...|+.+|.. ..+.++|++.|.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~----~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 238 TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ----QKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Confidence 45556777666654 77888888888864 46888899999988864
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.98 E-value=0.034 Score=53.22 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhcch
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASK 108 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a~~ 108 (408)
+++|+.||+|++..||+.| +|.|+..+..+|+.|+.++.++.++.....
T Consensus 2 ~~~l~~LP~ei~l~IlsfL-----~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFL-----SPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTS-----CHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred cchhHhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 4579999999999999988 688999999999999999999987765443
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.70 E-value=1.5 Score=45.32 Aligned_cols=116 Identities=8% Similarity=-0.068 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhh-ccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFY-CLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~-~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
.++++.++.++.+. .+..|++.-+.++.. ...+++++++++.++.+.. +..|+++-+.++..- |. ..++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~-----~~~~ 162 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AV-----APAE 162 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CC-----CHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CC-----ChHH
Confidence 57889999988875 489999999998873 2237899999999999875 788999999888653 21 5789
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcC--C--------CccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDG--Y--------GVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G--~--------Gv~~d~~~A~~w~~kAA~~ 240 (408)
+++++.++.+. .+..|.+..+.++..= . .....++++++++.+|...
T Consensus 163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 99999999987 6899999999998751 1 1125679999999999974
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.54 E-value=2.6 Score=41.47 Aligned_cols=113 Identities=10% Similarity=-0.046 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHhHHHHhh----ccCCHH--HHHHHHHHHH-----hcCcHHHHHHHHHHHHcCCCCC
Q 015393 119 SESAHRFLKLCAD--AGNVEACYTLGMIRFY----CLQNRG--SGASLMAKAA-----ISSHAQALYSLAVIQFNGSGGS 185 (408)
Q Consensus 119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~----~~~d~~--~A~~~~~kAA-----~~G~~~A~~~Lg~~y~~G~Gv~ 185 (408)
..+|+.+|++|.+ .+++.|+-.|++.|.. ...+.. .++.--.+++ ...++.++..++.++.. .|
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~g-- 291 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-KG-- 291 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-HT--
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-CC--
Confidence 4689999998865 5788999988888861 111212 2222111122 12467777777776642 24
Q ss_pred CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 186 KNDKDLRAGVALCARAAFLG-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 186 ~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
++++|+.++++|...+ +..++..+|.++.. ..+.++|+.+|.+|....-
T Consensus 292 ----d~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 292 ----KTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSC
T ss_pred ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC
Confidence 8999999999999875 44456678888854 7899999999999998654
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.43 E-value=1.9 Score=41.27 Aligned_cols=120 Identities=10% Similarity=-0.015 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc------HHHHHHHHHH--H-HcCC
Q 015393 116 NNWSESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH------AQALYSLAVI--Q-FNGS 182 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~------~~A~~~Lg~~--y-~~G~ 182 (408)
....++|+.|+.+..+. ++.++...+..+|+ -.++.++|.+.+++..+... -....+|+.. . ..|.
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 45689999999998776 58899999999998 68899999999998766643 3555666543 2 2343
Q ss_pred CCCCCccCHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHH------------HcCCHHHH
Q 015393 183 GGSKNDKDLRAGVALCARAAFLG-H---IDALRELGHCLQDGYGVRQNIAEGRRFLVQAN------------ARELAAVL 246 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~G-~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA------------~~G~~~A~ 246 (408)
+ ++..|+..|+..++.. + +...++ ++.. ..++++|...+++.. +..++.++
T Consensus 192 ~------~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 192 E------TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp S------TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred c------cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 3 5669999999998774 3 334444 4433 478999999987543 25677777
Q ss_pred hhh
Q 015393 247 SSA 249 (408)
Q Consensus 247 ~~~ 249 (408)
.+.
T Consensus 259 aN~ 261 (310)
T 3mv2_B 259 ANQ 261 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.25 E-value=0.61 Score=44.48 Aligned_cols=81 Identities=9% Similarity=-0.114 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHhHHHHhhc----cCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCC
Q 015393 119 SESAHRFLKLCADAG----NVEACYTLGMIRFYC----LQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKN 187 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G----~~~A~~~LG~~y~~~----~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~ 187 (408)
...|...++++.+.. +..|+..||.+|..+ -+|.++|.++|++|.+.+ +..+.|.+|..|..-.|
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g---- 254 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN---- 254 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT----
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC----
Confidence 457888888888764 456999999999854 489999999999998863 49999999999976555
Q ss_pred ccCHHHHHHHHHHHHhCC
Q 015393 188 DKDLRAGVALCARAAFLG 205 (408)
Q Consensus 188 ~~d~~kA~~~~~kAA~~G 205 (408)
|.+.+.+++++|....
T Consensus 255 --d~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 255 --NRAGFDEALDRALAID 270 (301)
T ss_dssp --CHHHHHHHHHHHHHCC
T ss_pred --CHHHHHHHHHHHHcCC
Confidence 8999999999998754
No 214
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=1.1 Score=43.11 Aligned_cols=111 Identities=6% Similarity=-0.062 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHc----C----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHc
Q 015393 117 NWSESAHRFLKLCADA----G----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFN 180 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~----G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~ 180 (408)
+..++++.+++++.+. + -.....+||.+|. ..+++.+|+.+++++... ...++...+|.+|..
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4467888888776542 2 3568899999998 689999999999988643 346788999999964
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhC----CCH-----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393 181 GSGGSKNDKDLRAGVALCARAAFL----GHI-----DALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239 (408)
Q Consensus 181 G~Gv~~~~~d~~kA~~~~~kAA~~----G~~-----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~ 239 (408)
.| |+.+|..+|++|-.. +++ .....+|.+|. ..+|+.+|..+|.++-+
T Consensus 188 -~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 188 -LR------NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC----EDKDYKTAFSYFFESFE 244 (434)
T ss_dssp -TT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHH
T ss_pred -hC------cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHH
Confidence 34 999999999998642 332 23344555553 37899999999999875
No 215
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=90.91 E-value=0.11 Score=49.82 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=37.6
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHH-HHHHHHHHHHHhhcCchHH
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFV-NVLITCKRMNGLALNSLVL 103 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~-~a~l~ck~~~~~~~~~~~~ 103 (408)
...+..||+||+.+||+.|. +.+++ ...++||+|+.+..++.++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp-----~~~L~~r~~~VCk~Wr~l~~~~~~w 92 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELP-----ATELVQACRLVCLRWKELVDGAPLW 92 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSC-----HHHHHHTGGGTCHHHHHHHTSHHHH
T ss_pred ccChhhCCHHHHHHHHHcCC-----HHHHHHHHHHHhHHHHHHhcChHHH
Confidence 44789999999999999984 56898 9999999999998776553
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=90.01 E-value=3.7 Score=42.44 Aligned_cols=124 Identities=9% Similarity=-0.064 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCC---------HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCC
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQN---------RGSGASLMAKAAISS--HAQALYSLAVIQFNGS 182 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d---------~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~ 182 (408)
+++.++|+.++.++.+. .+..|++.-|.++.....+ ++++++++.++.+.. +..|++.-+.++..-
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l- 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL- 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 45778999999988875 4889999999888743332 899999999999874 888999999888653
Q ss_pred CCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--CHHHHh
Q 015393 183 GGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE--LAAVLS 247 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~~ 247 (408)
| ..+++++++++.++.+. -+..|.+.-+.++..- ....++++.++.++.+.. +..|..
T Consensus 121 ~----~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l---~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 121 P----EPNWARELELCARFLEADERNFHCWDYRRFVAAQA---AVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp S----SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---CCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred c----cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCCccHHH
Confidence 2 11678999999999986 5888999998888651 236789999999998753 444433
No 217
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.38 E-value=9.6 Score=36.64 Aligned_cols=123 Identities=10% Similarity=-0.059 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC-------CCC
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG-------SKN 187 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv-------~~~ 187 (408)
.++++.++.++.+. .|..|.+.-+.+........+++++++.++.+. .+..|.++.+.++..-... ...
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 46788888877764 588898888888763333368999999999877 5888999998887542110 001
Q ss_pred ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcc-------ccHHHHHHHHHHHHHcC
Q 015393 188 DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVR-------QNIAEGRRFLVQANARE 241 (408)
Q Consensus 188 ~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~-------~d~~~A~~w~~kAA~~G 241 (408)
...+.++++++.+|... +|..|.+.+..++..+.|.. .-+++++.++.+..+..
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 12478899999999865 78899988888888876643 33678888888877643
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=86.50 E-value=0.97 Score=45.63 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393 120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA 199 (408)
Q Consensus 120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~ 199 (408)
+++..+++ ..+..+.+.+|..++ ..+.+++|..+|.++ .....||.+|.. .| ++..|++.|+
T Consensus 111 ~e~e~f~~----~pn~~a~~~IGd~~~-~~g~yeeA~~~Y~~a------~n~~~LA~~L~~-Lg------~yq~AVea~~ 172 (449)
T 1b89_A 111 AELEEFIN----GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNV------SNFGRLASTLVH-LG------EYQAAVDGAR 172 (449)
T ss_dssp HHHTTTTT----CC-----------------CTTTHHHHHHHT------TCHHHHHHHHHT-TT------CHHHHHHHHH
T ss_pred HHHHHHHc----CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHh------hhHHHHHHHHHH-hc------cHHHHHHHHH
Confidence 33555553 245568888888777 678888888888877 466678888754 34 7888999999
Q ss_pred HHHhCCCHHH
Q 015393 200 RAAFLGHIDA 209 (408)
Q Consensus 200 kAA~~G~~~A 209 (408)
+| +++..
T Consensus 173 KA---~~~~~ 179 (449)
T 1b89_A 173 KA---NSTRT 179 (449)
T ss_dssp HH---TCHHH
T ss_pred Hc---CCchh
Confidence 88 56743
No 219
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=84.41 E-value=14 Score=35.01 Aligned_cols=118 Identities=11% Similarity=-0.035 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhcC--cHHHHHHHHHHH----HcCCCCCCC
Q 015393 117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCL-QNRGSGASLMAKAAISS--HAQALYSLAVIQ----FNGSGGSKN 187 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y----~~G~Gv~~~ 187 (408)
.++++|+..+.++.+. .+..|.+.-|.++.... .++++++.++.++.... +..+.+.-+.++ ... +..
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~~-- 123 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NND-- 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TTC--
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-ccc--
Confidence 4556666666666554 46677777777666333 47777777777776653 566666666666 322 101
Q ss_pred ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 188 DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 188 ~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
.++.+++.++.++.+. .+..|.+.-+.++.. .|. -+.++++.++.++.+.
T Consensus 124 -~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~-~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 124 -FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT-FDL-HNDAKELSFVDKVIDT 175 (306)
T ss_dssp -CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC-TTCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcc-cChHHHHHHHHHHHHh
Confidence 1566777777777764 466677666666654 111 1123666777777654
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.25 E-value=10 Score=31.28 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcCcH----HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 015393 135 VEACYTLGMIRFY--CLQNRGSGASLMAKAAISSHA----QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA 202 (408)
Q Consensus 135 ~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA 202 (408)
.++.|+++..+.. ...+..+++.+++.-...+++ +..|.||+-|.. .| |+.+|.+++....
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg------~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LK------EYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHH
Confidence 4455555444442 122333455555554444433 244444444432 22 4555555544443
No 221
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=82.76 E-value=0.63 Score=45.43 Aligned_cols=45 Identities=29% Similarity=0.487 Sum_probs=39.2
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS 104 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~ 104 (408)
.++|+.||++++..||+.| ++.|+..+..+|+.|+.+..++.++.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l-----~~~~l~~~~~v~~~~~~~~~~~~~w~ 60 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFL-----EPKDLLQAAQTCRYWRILAEDNLLWR 60 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTS-----CHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred CChhHHCCHHHHHHHHHhC-----CHHHHHHHHHHhHHHHhhcCchhHhh
Confidence 6789999999999999987 57899999999999999987765544
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=82.51 E-value=4.3 Score=39.85 Aligned_cols=67 Identities=7% Similarity=-0.139 Sum_probs=53.6
Q ss_pred cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393 132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH 206 (408)
Q Consensus 132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~ 206 (408)
..++.++..++.+++ ..+++++|+.++++|...+ +..++..+|.+|.. .| +.++|+++|.+|....-
T Consensus 274 ~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~-~G------~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM-KG------MNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHhcCC
Confidence 457777777888776 5799999999999999886 44455677888854 45 88999999999998753
No 223
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=82.31 E-value=5.1 Score=40.37 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHH-------HHHHH----------------
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQA-------LYSLA---------------- 175 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A-------~~~Lg---------------- 175 (408)
.++|..+|.++ ..+..|+..+. -.+++++|++.|++| +++.. +..++
T Consensus 138 yeeA~~~Y~~a------~n~~~LA~~L~-~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~a 207 (449)
T 1b89_A 138 YDAAKLLYNNV------SNFGRLASTLV-HLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA 207 (449)
T ss_dssp TTTHHHHHHHT------TCHHHHHHHHH-TTTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCH
T ss_pred HHHHHHHHHHh------hhHHHHHHHHH-HhccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCH
Confidence 36788888755 46677888877 578899999999998 56743 33332
Q ss_pred -------HHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q 015393 176 -------VIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLV 235 (408)
Q Consensus 176 -------~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~ 235 (408)
.+|.. .| ..++|+.+|+++... -|......||.+|..- -+..+.+.++.|.
T Consensus 208 d~l~~lv~~Yek-~G------~~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~ 267 (449)
T 1b89_A 208 DELEELINYYQD-RG------YFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHH-CC------CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 33422 23 677888888888765 5788889999999652 3455555555554
No 224
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.21 E-value=1.1 Score=31.70 Aligned_cols=41 Identities=34% Similarity=0.804 Sum_probs=29.2
Q ss_pred CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393 325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE 378 (408)
Q Consensus 325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~ 378 (408)
.....|. -|+.... -+|.+|. ++|||..|. + .||..|....
T Consensus 10 ~~~~~C~--vC~~~~k-----Y~CPrC~-~~yCSl~C~----k-~Hk~~C~~~~ 50 (56)
T 2yqq_A 10 CSTVVCV--ICLEKPK-----YRCPACR-VPYCSVVCF----R-KHKEQCNPET 50 (56)
T ss_dssp CCCCCCT--TTCSCCS-----EECTTTC-CEESSHHHH----H-HHHHHCCCCC
T ss_pred CCCCccC--cCcCCCe-----eeCCCCC-CCeeCHHHH----H-HHHhhCcCCc
Confidence 3445688 5766333 6899998 899999995 5 4777787644
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=81.63 E-value=47 Score=33.44 Aligned_cols=167 Identities=10% Similarity=-0.050 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhcch-hHHHhh-------hcCCHHHHHHHHHHHHH
Q 015393 60 ALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASK-KTFAIK-------ANNWSESAHRFLKLCAD 131 (408)
Q Consensus 60 ~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a~~-~~~~~~-------~~~~~~~A~~~l~~aAe 131 (408)
..|+-++..++...+.. .|+..+.-....+.+.+..+.+...... ..+... .....++|..+|..-.+
T Consensus 23 ~spe~~l~~~id~c~k~----G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~ 98 (501)
T 4g26_A 23 QSPEALLKQKLDMCSKK----GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV 98 (501)
T ss_dssp -CHHHHHHHHHHHTTTS----CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH
Confidence 34565665555555443 2566666666667666655533221111 111100 00114678899988888
Q ss_pred cC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC
Q 015393 132 AG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG 205 (408)
Q Consensus 132 ~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G 205 (408)
.| |...+..|-..|. ..++.++|+++|+.--+.|. ...+..|=..|.. .| ++++|.++|..-.+.|
T Consensus 99 ~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g------~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 99 DKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KG------DADKAYEVDAHMVESE 170 (501)
T ss_dssp TTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CC------CHHHHHHHHHHHHhcC
Confidence 87 5556555555554 56899999999999888873 3333333333322 34 8889999999988887
Q ss_pred C---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 206 H---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 206 ~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
. ...+..|=..| .-..+.++|.++|++--+.|.
T Consensus 171 ~~Pd~~ty~~Li~~~----~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 171 VVPEEPELAALLKVS----MDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp CCCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHH----hhCCCHHHHHHHHHHHHHhCC
Confidence 4 33444443333 335678888888888776654
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=80.58 E-value=15 Score=30.23 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCCcccc
Q 015393 153 GSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHI----DALRELGHCLQDGYGVRQN 226 (408)
Q Consensus 153 ~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~~d 226 (408)
....+-|.++...| ..+++|++|..+.. .. ...|..+++.+++.-...+++ +..|.||.-+..-. |
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~---~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg----~ 89 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TR---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK----E 89 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SS---SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh----h
Confidence 34445555555533 46677777776654 22 234666677777776666543 46666666665432 5
Q ss_pred HHHHHHHHHHHHHc
Q 015393 227 IAEGRRFLVQANAR 240 (408)
Q Consensus 227 ~~~A~~w~~kAA~~ 240 (408)
+.+|+++.....+.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
No 227
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=80.38 E-value=38 Score=32.39 Aligned_cols=121 Identities=7% Similarity=-0.059 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCL-QNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
.++++.++..+... .+..+.+.-+.++.... .++++++.++.++.+.. +..|.+.-+.++..- |. ..++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l-~~-----~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AV-----APAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC-----CHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-Cc-----CHHH
Confidence 35788888877764 59999999998887432 36899999999998874 788999888888653 31 3579
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCC----------ccccHHHHHHHHHHHHHc--CCHHH
Q 015393 194 GVALCARAAFL--GHIDALRELGHCLQDGYG----------VRQNIAEGRRFLVQANAR--ELAAV 245 (408)
Q Consensus 194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~G----------v~~d~~~A~~w~~kAA~~--G~~~A 245 (408)
+++++.++.+. .+..|.+..+.++..-.. ...-+.+++.++.+|... ++..|
T Consensus 164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999886 789999999998864211 114478899999999864 44444
No 228
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=78.58 E-value=0.63 Score=45.47 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=38.3
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcC-chHHh
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALN-SLVLS 104 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~-~~~~~ 104 (408)
.+++..||++++..||+.| ++.|+..+..+||.|+.+..+ +.++.
T Consensus 12 ~d~~~~lp~~~~~~i~~~l-----~~~~l~~~~~v~~~w~~~~~~~~~~w~ 57 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYL-----QFEDIINSLGVSQNWNKIIRKSTSLWK 57 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTS-----CHHHHHHHHTTCHHHHHHHTTCHHHHH
T ss_pred cCChHHCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999999988 678999999999999998876 44433
No 229
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=77.46 E-value=26 Score=33.83 Aligned_cols=120 Identities=9% Similarity=-0.067 Sum_probs=91.0
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393 116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL 191 (408)
Q Consensus 116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~ 191 (408)
..++++|+.++.++.+. .+..+.+.-+.++.....++++++.++.++... .+..+.+.-+.++....+. ++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~-----~~ 141 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-----DP 141 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS-----CC
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC-----Ch
Confidence 34567888888888765 588999999988875445799999999999976 4888999999998764331 45
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcC--CC--ccccHHHHHHHHHHHHHc
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDG--YG--VRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G--~G--v~~d~~~A~~w~~kAA~~ 240 (408)
.++++++.++.+. .+..|.+.-+.++..- .. .....++++.++.++.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 6999999999986 5788888877776431 11 123346899999999875
No 230
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=74.76 E-value=0.84 Score=44.51 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=38.8
Q ss_pred CCcCCCCCHH----HHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhh
Q 015393 55 SDLFDALPDD----LVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSK 105 (408)
Q Consensus 55 ~~~f~~lp~d----l~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~ 105 (408)
.++|..||++ ++..||+.| ++.|+..+..+||+|+.+..++.++..
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l-----~~~~l~~~~~v~~~w~~~~~~~~~w~~ 57 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYL-----DAKSLCAAELVCKEWYRVTSDGMLWKK 57 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTC-----CHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 5788999999 999998877 578999999999999999877665544
No 231
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=74.06 E-value=1 Score=42.31 Aligned_cols=44 Identities=30% Similarity=0.479 Sum_probs=36.2
Q ss_pred CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHH
Q 015393 55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVL 103 (408)
Q Consensus 55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~ 103 (408)
...|++||+|++..||..+. ..|+..+..+|++|+....++..+
T Consensus 6 ~~~~~~LP~eil~~If~~L~-----~~d~~~~~~vc~~W~~~~~~~~~~ 49 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-----LPELLKVSGVCKRWYRLASDESLW 49 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-----HHHHHHTTSSCHHHHHHHTCSTTS
T ss_pred cCChhhCCHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhcCchhh
Confidence 45689999999999999884 569999999999999997655433
No 232
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=72.97 E-value=1.4 Score=44.85 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=28.4
Q ss_pred CcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHh
Q 015393 56 DLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGL 96 (408)
Q Consensus 56 ~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~ 96 (408)
+.|+.||+|++..||+.+. ++.|+..+.++||+|+..
T Consensus 4 d~~~~LPdevL~~If~~L~----~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQ----LDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCC----CHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcC----CchhHHHHHHHHHHHHHh
Confidence 5689999999999999986 467999999999999987
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=69.71 E-value=20 Score=36.52 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=53.1
Q ss_pred HHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHH
Q 015393 138 CYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF--LGHIDALREL 213 (408)
Q Consensus 138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~--~G~~~A~~~L 213 (408)
...||.+..| ......|..||.+|+.. ++..++..||+++.. .| |.-.|+.||.||.- .-++.|.-+|
T Consensus 155 l~~LGDL~RY-~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~------~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 155 LVHLGDIARY-RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KG------DHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TT------CHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHcccHHHH-HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-cc------ccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 3456666554 34567888999988877 477788888888865 33 66778888888854 4677787788
Q ss_pred HHHHHc
Q 015393 214 GHCLQD 219 (408)
Q Consensus 214 g~~y~~ 219 (408)
...+..
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777753
No 234
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=67.30 E-value=1.8 Score=30.94 Aligned_cols=39 Identities=31% Similarity=0.642 Sum_probs=25.7
Q ss_pred CCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhch
Q 015393 327 LRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCA 375 (408)
Q Consensus 327 ~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~ 375 (408)
...|. -|...+. ....-+|.+|. ++|||..|.+. || .|.
T Consensus 11 ~~~C~--vC~~~~~-~~akY~CPrC~-~rYCSl~C~k~-----Hk-~Cs 49 (59)
T 1x4s_A 11 AGPCG--FCPAGEV-QPARYTCPRCN-APYCSLRCYRT-----HG-TCA 49 (59)
T ss_dssp CEEEC--SSCTTCC-EEECEECTTTC-CEESSHHHHHH-----HC-CGG
T ss_pred CCcCc--CCCCCcC-CCccccCcCCC-CCccChHHHHH-----Hh-HhC
Confidence 35788 5653211 11237799998 89999999973 66 465
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=66.33 E-value=30 Score=36.46 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHhc-C--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCc
Q 015393 149 LQNRGSGASLMAKAAIS-S--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGV 223 (408)
Q Consensus 149 ~~d~~~A~~~~~kAA~~-G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 223 (408)
.++.+.|...|.+|.+. + ........+.+-..-.+ |.+.|...|+++.+. .++.-...++.+...
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~------d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~---- 516 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK------DTKTACKVLELGLKYFATDGEYINKYLDFLIY---- 516 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----
Confidence 46789999999999876 3 23444455555443222 678999999999885 334433344443322
Q ss_pred cccHHHHHHHHHHHHHcCC
Q 015393 224 RQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 224 ~~d~~~A~~w~~kAA~~G~ 242 (408)
..|.+.|+.||++|.....
T Consensus 517 ~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 3589999999999998654
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=62.40 E-value=13 Score=37.90 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--CHHH
Q 015393 170 ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE--LAAV 245 (408)
Q Consensus 170 A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A 245 (408)
.+..||.+..... ....|..||.+|+.. ++..++..||.+... ..|.-+|..||.++...- .+.|
T Consensus 154 ~l~~LGDL~RY~~-------~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 154 CLVHLGDIARYRN-------QTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHTT-------CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHcccHHHHHH-------HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHhcCCCChhH
Confidence 4557888877653 467999999999986 678899999999965 568889999999998643 4444
Q ss_pred Hhh
Q 015393 246 LSS 248 (408)
Q Consensus 246 ~~~ 248 (408)
..+
T Consensus 223 ~~n 225 (497)
T 1ya0_A 223 STN 225 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=61.08 E-value=79 Score=32.67 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=59.0
Q ss_pred HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCHHHH
Q 015393 131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDAL 210 (408)
Q Consensus 131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~~A~ 210 (408)
+..++...-.||.+++ ..+|++.|.+.|.++ |+......|-.+ .| |.++..+.-+.|...|+....
T Consensus 677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~---~d~~~l~~l~~~----~~------~~~~~~~~~~~a~~~~~~~~A 742 (814)
T 3mkq_A 677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNA---HDLESLFLLHSS----FN------NKEGLVTLAKDAETTGKFNLA 742 (814)
T ss_dssp TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHH---TCHHHHHHHHHH----TT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHc---cChhhhHHHHHH----cC------CHHHHHHHHHHHHHcCchHHH
Confidence 3455666677888887 678999999999875 455544433332 33 555666666667777777766
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393 211 RELGHCLQDGYGVRQNIAEGRRFLVQANARELAA 244 (408)
Q Consensus 211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~ 244 (408)
+.+... ..|+++|+++|.+.-....+.
T Consensus 743 ~~~~~~-------~g~~~~a~~~~~~~~~~~~A~ 769 (814)
T 3mkq_A 743 FNAYWI-------AGDIQGAKDLLIKSQRFSEAA 769 (814)
T ss_dssp HHHHHH-------HTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHH-------cCCHHHHHHHHHHcCChHHHH
Confidence 655332 257888888887654433333
No 238
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=57.32 E-value=1.4e+02 Score=28.67 Aligned_cols=129 Identities=7% Similarity=-0.059 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccC-CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC-CCCccCH
Q 015393 118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQ-NRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGG-SKNDKDL 191 (408)
Q Consensus 118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~-d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv-~~~~~d~ 191 (408)
..++++.++.++... .+..+.+.-+.++....+ +++++++++.++.+.. +..|.+.-+.++..-... .......
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 478899999988865 589999999999885434 7899999999999774 788888877776431110 0112245
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC---ccccHHHHHHHHHHHHHc--CCHHHH
Q 015393 192 RAGVALCARAAFL--GHIDALRELGHCLQDGYG---VRQNIAEGRRFLVQANAR--ELAAVL 246 (408)
Q Consensus 192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~G---v~~d~~~A~~w~~kAA~~--G~~~A~ 246 (408)
.++++++.++.+. .|..|.+..+.++..-.+ ....+++++.++.+|... ++..+.
T Consensus 184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 6899999999876 689999999999976322 223378999999999864 455553
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=54.54 E-value=24 Score=29.96 Aligned_cols=39 Identities=26% Similarity=0.230 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCHHHHHHH
Q 015393 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALREL 213 (408)
Q Consensus 168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~~A~~~L 213 (408)
|+-.+.||..|.. .| |..+|-+++.+|++.|-.+|+.++
T Consensus 125 ~~~l~kia~Ay~K-lg------~~r~a~eLl~~AC~kG~kEAC~~i 163 (172)
T 1wy6_A 125 ASILVAIANALRR-VG------DERDATTLLIEACKKGEKEACNAV 163 (172)
T ss_dssp HHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHH-hc------chhhHHHHHHHHHHhhhHHHHHHH
Confidence 4445555555532 33 444555555555555555555444
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=53.83 E-value=33 Score=29.63 Aligned_cols=73 Identities=11% Similarity=-0.079 Sum_probs=50.4
Q ss_pred HHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---------------------------HHHHHHHHHHHHcCCCCCCCcc
Q 015393 137 ACYTLGMIRFYCLQNRGSGASLMAKAAISSH---------------------------AQALYSLAVIQFNGSGGSKNDK 189 (408)
Q Consensus 137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~---------------------------~~A~~~Lg~~y~~G~Gv~~~~~ 189 (408)
+++.+|..++ .++++.+|..+|++|..... .+--|.++.||.. .+
T Consensus 65 ~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~-l~------ 136 (167)
T 3ffl_A 65 LLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTV-LK------ 136 (167)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHH-TT------
T ss_pred HHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHH-HC------
Confidence 7788888887 79999999999999854321 1455777777754 22
Q ss_pred CHHHHHHHHHHH-HhCCCHHHHHHHHHHH
Q 015393 190 DLRAGVALCARA-AFLGHIDALRELGHCL 217 (408)
Q Consensus 190 d~~kA~~~~~kA-A~~G~~~A~~~Lg~~y 217 (408)
+...|+..++.- ..+-.+.--..||.+|
T Consensus 137 ~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 137 QDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp CHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred CHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 566777766653 4455666666666665
No 241
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=53.59 E-value=76 Score=33.38 Aligned_cols=112 Identities=4% Similarity=0.002 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHc-C--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393 119 SESAHRFLKLCADA-G--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA 193 (408)
Q Consensus 119 ~~~A~~~l~~aAe~-G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k 193 (408)
.+.|...|.+|.+. + ....+...+.+.+...+|.+.|...|+++.+. .++.-...++.+. ...| +.++
T Consensus 450 l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe-~~~~------~~~~ 522 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL-IYVN------EESQ 522 (679)
T ss_dssp HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHT------CHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HhCC------CHHH
Confidence 56888999999876 3 24445455555554556789999999999886 2333222333322 2234 7899
Q ss_pred HHHHHHHHHhCCC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393 194 GVALCARAAFLGH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240 (408)
Q Consensus 194 A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~ 240 (408)
|..||++|..... ....+..-.-|+.-.| |.+.+...+.++.+.
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G---~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVG---SLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC---CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Confidence 9999999998754 3344444444444344 566677888887764
No 242
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=46.15 E-value=2.4e+02 Score=28.11 Aligned_cols=115 Identities=8% Similarity=0.036 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHhHHHHhhcc--------CCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Q 015393 117 NWSESAHRFLKLCADAG---NVEACYTLGMIRFYCL--------QNRGSGASLMAKAAISS---HAQALYSLAVIQFNGS 182 (408)
Q Consensus 117 ~~~~~A~~~l~~aAe~G---~~~A~~~LG~~y~~~~--------~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~ 182 (408)
...++|+.+|...-+.| |...+..|=..|.... ++.++|++.|..-.+.| +...+..|-..|.
T Consensus 40 G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~--- 116 (501)
T 4g26_A 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV--- 116 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---
Confidence 34566666666666665 3333332222221100 12456666666666665 2233333333332
Q ss_pred CCCCCccCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393 183 GGSKNDKDLRAGVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL 242 (408)
Q Consensus 183 Gv~~~~~d~~kA~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~ 242 (408)
...++++|+++|++--+.| +...+..|=..| .-..++++|.++|.+-.+.|.
T Consensus 117 ----~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~----~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 117 ----AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF----CRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp ----HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTTC
T ss_pred ----hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH----HHCCCHHHHHHHHHHHHhcCC
Confidence 1236677777777666665 333333332222 234567777777777666664
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=45.94 E-value=1.1e+02 Score=25.28 Aligned_cols=73 Identities=7% Similarity=0.067 Sum_probs=51.8
Q ss_pred CHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC
Q 015393 134 NVEACYTLGMIRFY--CLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH 206 (408)
Q Consensus 134 ~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~ 206 (408)
.+.+.|+++..+.. ...|..+++..++.-...+ ..+-+|.||+-+.. .| |+.+|.++.....+. ++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lg------dY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LG------EYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHTTCTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hh------hHHHHHHHHHHHHhhCCCC
Confidence 56788888877763 3356668888888777654 36678888888864 34 888999888888765 56
Q ss_pred HHHHHHH
Q 015393 207 IDALREL 213 (408)
Q Consensus 207 ~~A~~~L 213 (408)
..|+.-.
T Consensus 112 ~QA~~Lk 118 (134)
T 3o48_A 112 KQVGALK 118 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=45.08 E-value=1.1e+02 Score=25.98 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHH
Q 015393 135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSL 174 (408)
Q Consensus 135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~L 174 (408)
|+-.+.|+..|. --+|..++-+++.+|++.|-.+|+-++
T Consensus 125 ~~~l~kia~Ay~-Klg~~r~a~eLl~~AC~kG~kEAC~~i 163 (172)
T 1wy6_A 125 ASILVAIANALR-RVGDERDATTLLIEACKKGEKEACNAV 163 (172)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHH-HhcchhhHHHHHHHHHHhhhHHHHHHH
Confidence 555555665555 345666666666666666666666554
No 245
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=44.79 E-value=8.9 Score=28.11 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=12.4
Q ss_pred ccccCChhHHHhhch
Q 015393 353 AVNYCSRACQALDWK 367 (408)
Q Consensus 353 ~~~YCs~~cQ~~dW~ 367 (408)
.+.|||+.|+..|-.
T Consensus 27 ~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 27 FRPFCSKRCQLIDLG 41 (68)
T ss_dssp CCSSSSHHHHHHHHS
T ss_pred CCcccCHHHHhhhHH
Confidence 467999999999943
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=42.18 E-value=1.5e+02 Score=24.75 Aligned_cols=73 Identities=7% Similarity=0.079 Sum_probs=53.3
Q ss_pred CCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C
Q 015393 133 GNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G 205 (408)
Q Consensus 133 G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G 205 (408)
=.++++|+++..+.. ...|..+++.+++.-...+ .-+-.|.||+-|.. .| |+.+|.++.....+. +
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~------~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LG------EYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TT------CHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hh------hHHHHHHHHHHHHhcCCC
Confidence 367788888877763 3466778999988877653 56789999998864 34 899999998887765 4
Q ss_pred CHHHHHH
Q 015393 206 HIDALRE 212 (408)
Q Consensus 206 ~~~A~~~ 212 (408)
+..|+.-
T Consensus 110 n~QA~~L 116 (144)
T 1y8m_A 110 NKQVGAL 116 (144)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 5555443
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=37.97 E-value=97 Score=25.64 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--
Q 015393 167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE-- 241 (408)
Q Consensus 167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G-- 241 (408)
.+.++|++|..+.... ...|..+++.+++.....+. -+-.|.||.-+.. -+|+.+|+++.....+..
T Consensus 39 s~qt~F~yAw~Lv~S~----~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----lgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKST----DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCC
Confidence 6789999998886642 34488999999998887543 5678999998876 789999999999887653
Q ss_pred CHHH
Q 015393 242 LAAV 245 (408)
Q Consensus 242 ~~~A 245 (408)
+..|
T Consensus 111 N~QA 114 (134)
T 3o48_A 111 NKQV 114 (134)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4444
No 248
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=35.45 E-value=9.3 Score=38.66 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhh
Q 015393 59 DALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLA 97 (408)
Q Consensus 59 ~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~ 97 (408)
.+||||++..||+.+. ++.|+..+.++||+|....
T Consensus 14 ~~LPdeil~~I~~~L~----~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYIT----DPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCC----CHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcC----CHHHHHHHHHHhHHHHHhh
Confidence 4799999999999984 5689999999999998873
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.87 E-value=1.7e+02 Score=24.43 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC-
Q 015393 166 SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE- 241 (408)
Q Consensus 166 G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G- 241 (408)
=.++++|++|..+..-. ...|..+++.+++.-...+ .-+-.|.||.-|.. -+|+.+|+++.....+..
T Consensus 37 vs~~t~F~YAw~Lv~S~----~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKST----DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSS----SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCC
Confidence 37889999999886532 3458899999999988743 45789999999977 789999999999888753
Q ss_pred -CHHH
Q 015393 242 -LAAV 245 (408)
Q Consensus 242 -~~~A 245 (408)
+..|
T Consensus 109 ~n~QA 113 (144)
T 1y8m_A 109 NNKQV 113 (144)
T ss_dssp CCHHH
T ss_pred CcHHH
Confidence 5444
No 250
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.73 E-value=1.1e+02 Score=27.10 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 015393 191 LRAGVALCARAAFLGHIDALRELGHC 216 (408)
Q Consensus 191 ~~kA~~~~~kAA~~G~~~A~~~Lg~~ 216 (408)
+..|+.-++-.-..|.|++...|+.+
T Consensus 63 l~~a~aa~~a~~~iG~PE~~i~Laqa 88 (201)
T 3bge_A 63 MQVALAAWDCFTRVGAYEGERAIAQA 88 (201)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 34444555544555666666665543
No 251
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.72 E-value=82 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~ 165 (408)
.++|+.+.++|.+. ...+++++|+.+|..|++.
T Consensus 16 ~~~Ai~lv~~Ave~--------------D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKA--------------DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHH--------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHhccHHHHHHHHHHHHHH
Confidence 45677777777442 3568999999999988863
No 252
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.91 E-value=1.1e+02 Score=27.32 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCcHH-HHHHHHHHHHcC
Q 015393 155 GASLMAKAAISSHAQ-ALYSLAVIQFNG 181 (408)
Q Consensus 155 A~~~~~kAA~~G~~~-A~~~Lg~~y~~G 181 (408)
-+.-|.|+....+++ |+|.|+.|+..|
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~G 65 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAG 65 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 344455555555554 455555555444
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.71 E-value=88 Score=23.35 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393 120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA 199 (408)
Q Consensus 120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~ 199 (408)
++|+.+.++|.+. ...+++++|+.+|..|++. +..++-|....- .+ +.=..+..+|..
T Consensus 9 ~~Ai~lv~~Ave~--------------D~~g~y~eAl~lY~~aie~------l~~~lk~e~d~~-~k-~~ir~K~~eY~~ 66 (83)
T 2v6y_A 9 DMARKYAILAVKA--------------DKEGKVEDAITYYKKAIEV------LSQIIVLYPESV-AR-TAYEQMINEYKK 66 (83)
T ss_dssp HHHHHHHHHHHHH--------------HHTTCHHHHHHHHHHHHHH------HHHHHHHCTTCT-TH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHhccHHHHHHHHHHHHHH------HHHHHHHCCCHH-HH-HHHHHHHHHHHH
Confidence 4666777666432 3568899999999988763 333444432111 00 001246667777
Q ss_pred HHHh
Q 015393 200 RAAF 203 (408)
Q Consensus 200 kAA~ 203 (408)
+|-.
T Consensus 67 RAE~ 70 (83)
T 2v6y_A 67 RISY 70 (83)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 254
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.98 E-value=98 Score=23.31 Aligned_cols=33 Identities=12% Similarity=-0.048 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS 165 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~ 165 (408)
+.+|+.+..+|.+. ...+++++|+.+|..|++.
T Consensus 13 ~~~A~~lv~~Ave~--------------D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVEL--------------DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHH--------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHcCCHHHHHHHHHHHHHH
Confidence 34566666666543 2567888888888887753
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.33 E-value=5.1e+02 Score=24.61 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHH
Q 015393 192 RAGVALCARAA--FLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ 236 (408)
Q Consensus 192 ~kA~~~~~kAA--~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~k 236 (408)
.+|+.|-.+.- ..|+++-...+|.+|.. ++++.+|...|..
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~----e~~~~~Ae~H~il 161 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVE----EGEFEAAEKHLVL 161 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHh
Confidence 57888988854 56999999999999987 4688999888863
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.09 E-value=6.6e+02 Score=25.83 Aligned_cols=80 Identities=8% Similarity=-0.004 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcC-CH-HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393 119 SESAHRFLKLCADAG-NV-EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG 194 (408)
Q Consensus 119 ~~~A~~~l~~aAe~G-~~-~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA 194 (408)
..++..|+.+..... +. ...+.++..+. .+|...+..||.+.... ..+.+.|.+|..+.. .| +..+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr--~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-~g------~~~~a 338 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMALG--TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RG------REAEA 338 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TT------CHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHHHH--CCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-cC------CHHHH
Confidence 345666666533322 21 23344444332 48899999999875442 467889999998754 34 67788
Q ss_pred HHHHHHHHhCCCH
Q 015393 195 VALCARAAFLGHI 207 (408)
Q Consensus 195 ~~~~~kAA~~G~~ 207 (408)
..+|++++...+.
T Consensus 339 ~~~~~~~a~~~~f 351 (618)
T 1qsa_A 339 KEILHQLMQQRGF 351 (618)
T ss_dssp HHHHHHHHTSCSH
T ss_pred HHHHHHHhcCCCh
Confidence 8999999875443
No 257
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.15 E-value=1.5e+02 Score=26.36 Aligned_cols=51 Identities=24% Similarity=0.057 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCcHH-HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh---CCCHHHHH
Q 015393 154 SGASLMAKAAISSHAQ-ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF---LGHIDALR 211 (408)
Q Consensus 154 ~A~~~~~kAA~~G~~~-A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~---~G~~~A~~ 211 (408)
.-+.-|.|+....+++ |+|.|+.|+..| . -.--+.++..-|.| +.++.|+.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-D------p~~IaRRLvi~AsEDIGlAdP~Al~ 70 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-D------LASICRRLMVIGYEDIGLGNPAAAA 70 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C------HHHHHHHHHHHHHHTTGGGCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C------HHHHHHHHHHHHHhhccCCCHHHHH
Confidence 4455566777666666 466677777665 2 12244555555555 23444443
Done!