Query 015394
Match_columns 407
No_of_seqs 292 out of 1009
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.2E-29 4E-34 204.2 4.4 64 213-276 11-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.4E-29 4.7E-34 204.6 4.4 64 213-276 14-78 (78)
3 2ayd_A WRKY transcription fact 99.9 4.2E-23 1.4E-27 166.1 3.0 42 366-407 1-42 (76)
4 1wj2_A Probable WRKY transcrip 99.9 4.3E-23 1.5E-27 166.7 2.3 42 366-407 4-45 (78)
5 2rpr_A Flywch-type zinc finger 63.4 2.9 9.8E-05 33.1 1.7 51 213-275 21-74 (87)
6 1cz6_A Protein (androctonin); 48.5 5.1 0.00017 25.5 0.6 6 401-406 16-21 (26)
7 1xiw_B T-cell surface glycopro 25.0 22 0.00077 27.8 1.0 27 380-406 17-53 (79)
8 1qxn_A SUD, sulfide dehydrogen 24.4 18 0.00061 30.2 0.3 23 376-398 110-133 (137)
9 1odh_A MGCM1; transcription fa 17.7 65 0.0022 29.3 2.5 21 257-277 139-159 (174)
10 3kgb_A Thymidylate synthase 1/ 15.7 22 0.00076 34.8 -1.1 11 381-391 114-124 (294)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1.2e-29 Score=204.18 Aligned_cols=64 Identities=55% Similarity=1.029 Sum_probs=60.0
Q ss_pred CCCCCCCcchhhcCcccCCCCCCCCCccccCCcccccccceeccc-CCceEEEEecccCCCCCCC
Q 015394 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (407)
Q Consensus 213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~i~~i~Y~G~HnH~~p~ 276 (407)
..+.+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 456789999999999999999999999999999999999999986 7789999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.4e-29 Score=204.59 Aligned_cols=64 Identities=53% Similarity=0.998 Sum_probs=59.7
Q ss_pred CCCCCCCcchhhcCcccCCCCCCCCCccccCCcccccccceeccc-CCceEEEEecccCCCCCCC
Q 015394 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 276 (407)
Q Consensus 213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~~~C~akK~Vqr~~-dg~i~~i~Y~G~HnH~~p~ 276 (407)
..+.+|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 456789999999999999999999999999999999999999975 7889999999999999873
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.86 E-value=4.2e-23 Score=166.11 Aligned_cols=42 Identities=52% Similarity=0.925 Sum_probs=40.4
Q ss_pred CeeEEecccccccCCCccccccccccccCCCCCCCceeeccC
Q 015394 366 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI 407 (407)
Q Consensus 366 ~rvvvqt~se~dildDGyrWRKYGQK~VKGnp~PRsYYrCT~ 407 (407)
.||+|+|.++++++||||+|||||||.||||+|||+|||||.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~ 42 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS 42 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC
Confidence 489999999999999999999999999999999999999984
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.86 E-value=4.3e-23 Score=166.73 Aligned_cols=42 Identities=64% Similarity=0.986 Sum_probs=37.3
Q ss_pred CeeEEecccccccCCCccccccccccccCCCCCCCceeeccC
Q 015394 366 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI 407 (407)
Q Consensus 366 ~rvvvqt~se~dildDGyrWRKYGQK~VKGnp~PRsYYrCT~ 407 (407)
.+|+|||.++++++||||+|||||||.||||+|||+|||||.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~ 45 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT 45 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc
Confidence 479999999999999999999999999999999999999984
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=63.36 E-value=2.9 Score=33.06 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=32.4
Q ss_pred CCCCCCCcchhhcCcccCCCCCCCCCccccCC---cccccccceecccCCceEEEEecccCCCCCC
Q 015394 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275 (407)
Q Consensus 213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYkCt~---~~C~akK~Vqr~~dg~i~~i~Y~G~HnH~~p 275 (407)
..+.-|||.-.+--+ ...+.|.+|+. .+|.|+=.... ++ ++..+.|||++.
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 345668887664221 13468999987 37999744432 22 456789999753
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=48.51 E-value=5.1 Score=25.51 Aligned_cols=6 Identities=0% Similarity=-0.264 Sum_probs=5.3
Q ss_pred ceeecc
Q 015394 401 YVSNLM 406 (407)
Q Consensus 401 sYYrCT 406 (407)
+|||||
T Consensus 16 cyykct 21 (26)
T 1cz6_A 16 CYYKCT 21 (26)
T ss_dssp CEEEEC
T ss_pred eEEEcc
Confidence 799998
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.04 E-value=22 Score=27.81 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=19.6
Q ss_pred CCccccccccccc--------cC--CCCCCCceeecc
Q 015394 380 DDGYRWRKYGQKV--------VR--GNPNPRYVSNLM 406 (407)
Q Consensus 380 dDGyrWRKYGQK~--------VK--Gnp~PRsYYrCT 406 (407)
..+++|-|-|... +. ...-||.||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 6779999999752 22 223499999994
No 8
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=24.45 E-value=18 Score=30.18 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.0
Q ss_pred cccCCCccc-cccccccccCCCCC
Q 015394 376 VDILDDGYR-WRKYGQKVVRGNPN 398 (407)
Q Consensus 376 ~dildDGyr-WRKYGQK~VKGnp~ 398 (407)
+-.++.||. |++.|-.+++++|+
T Consensus 110 v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 110 IYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp EEEESSCHHHHHHTTCCEECCCCC
T ss_pred eEEEcCcHHHHHHCCCCccccccc
Confidence 445789997 99999999999986
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=17.73 E-value=65 Score=29.26 Aligned_cols=21 Identities=48% Similarity=0.907 Sum_probs=13.8
Q ss_pred cCCceEEEEecccCCCCCCCc
Q 015394 257 HDGQITEIIYKGTHDHPKPQL 277 (407)
Q Consensus 257 ~dg~i~~i~Y~G~HnH~~p~~ 277 (407)
.+|.....--+|.|+|++|..
T Consensus 139 h~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 139 HDGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp ECSSBEEEEEECCCCSCCCCC
T ss_pred EcCCEEEEecccccCCCCCCC
Confidence 344333333479999999986
No 10
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=15.74 E-value=22 Score=34.77 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q 015394 381 DGYRWRKYGQK 391 (407)
Q Consensus 381 DGyrWRKYGQK 391 (407)
=||+||.||-+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 48999999864
Done!