Query 015396
Match_columns 407
No_of_seqs 389 out of 1465
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 11:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 3.7E-32 1.3E-36 256.6 28.8 307 38-376 23-347 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.3E-33 2.8E-37 262.0 22.6 304 40-373 27-340 (451)
3 4gc0_A D-xylose-proton symport 100.0 7.1E-31 2.4E-35 251.5 23.6 347 46-406 17-405 (491)
4 2gfp_A EMRD, multidrug resista 100.0 3.6E-29 1.2E-33 231.3 17.0 260 44-353 3-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.3E-26 4.4E-31 222.0 25.1 339 41-407 13-422 (491)
6 2cfq_A Lactose permease; trans 99.9 5.5E-24 1.9E-28 199.3 10.9 293 41-372 7-307 (417)
7 2xut_A Proton/peptide symporte 99.9 2.8E-22 9.6E-27 193.4 18.3 170 43-234 14-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 7.6E-15 2.6E-19 138.4 14.3 174 41-236 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.5 2.2E-13 7.4E-18 128.0 14.3 144 43-195 260-406 (438)
10 2cfq_A Lactose permease; trans 99.5 2.3E-13 7.7E-18 127.1 12.6 141 84-240 261-404 (417)
11 4gc0_A D-xylose-proton symport 99.4 2E-12 7E-17 123.2 12.5 182 45-242 281-469 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.3 5.9E-12 2E-16 120.1 13.0 145 45-195 287-447 (491)
13 2gfp_A EMRD, multidrug resista 99.1 1.8E-11 6.2E-16 112.4 0.3 146 41-195 199-351 (375)
14 2xut_A Proton/peptide symporte 98.8 1.1E-08 3.8E-13 98.2 11.0 112 84-195 337-466 (524)
15 2g9p_A Antimicrobial peptide l 42.4 7 0.00024 18.5 0.4 14 101-114 2-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.7e-32 Score=256.58 Aligned_cols=307 Identities=14% Similarity=0.153 Sum_probs=241.4
Q ss_pred CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (407)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~ 117 (407)
.+++.+..++...+...+......+.+|.+.+++|.++.+ .|++.+++.++..+++++.|+++||+|||++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~ 96 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence 4456666777788888888899999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---hccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396 118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (407)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (407)
+.++.+++.+++ +++++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 88899999999999999999888775 99999999999999999999999999999999999999
Q ss_pred c-CCCCCCC----------CcccccccccCCCChhHHHHHHHHHHHHHHHHhc--cccCCCCCCCCcchhhhhhhhhhhc
Q 015396 194 A-QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESA 260 (407)
Q Consensus 194 ~-~~~~~~~----------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~ 260 (407)
. +..+... ...+|+... ..+|+.++++.++..++..+..++ .||++++.+++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------ 243 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------ 243 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------
T ss_pred HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------------
Confidence 8 5211000 000000000 111666666666655544443333 3444332111111
Q ss_pred hhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhh-ccCCCccCccccchhhHHHHHHHHHHHHHHH
Q 015396 261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF 339 (407)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~ 339 (407)
+++.....++++++|.++...+..++..........+.+.| ..+. +|++..+.+...+...++..++
T Consensus 244 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 244 -------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp -------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred -------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence 01112355678899999999888888888888888889988 7664 6899999999999999999999
Q ss_pred HHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHh
Q 015396 340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376 (407)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (407)
.. +.+++.||+++|+.+..+..+..++++.+.+.+.
T Consensus 312 ~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 312 RF-TGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 85 8999999999999999888888777776655443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.3e-33 Score=261.99 Aligned_cols=304 Identities=12% Similarity=0.068 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (407)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~ 119 (407)
++.+..+++..+...+....+.+.+|.+.+++ .+..+ .|++.+++.++..++++++|+++||+|||++++++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 45556777788888889999999999999999 99999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc----cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396 120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (407)
Q Consensus 120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 194 (407)
++.+++.+++++ +++++.++++|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|.+++|.+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999998887775 999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccc-ccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396 195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (407)
Q Consensus 195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (407)
+ ..| ||+.| ++.++..++. ++..+++||++++...+++++... +..++.+++.++.....+
T Consensus 180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (451)
T 1pw4_A 180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQ 242 (451)
T ss_dssp H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTH
T ss_pred H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-cccccchhhhhccccccc
Confidence 7 455 65555 7766666554 444567788776543222111110 000000000000111111
Q ss_pred cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh-
Q 015396 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL- 351 (407)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 351 (407)
...++.++++.++...+..++..........++|.|+.+. +|++..+.+.+.+..+++.+++.. +.+++.||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~ 316 (451)
T 1pw4_A 243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF 316 (451)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 1246778899999998888888888888888999998875 789999999999999999999985 889999999
Q ss_pred -chhHHHHHHHHHHH-HHHhhhhH
Q 015396 352 -GPIMVARIAGVLTI-PLLTSYPY 373 (407)
Q Consensus 352 -~~~~~~~~~~~~~~-~~~~~~~~ 373 (407)
++|+.+..+..+.. ++++.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 317 RGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCchhHHHHHHHHHHHHHHHHHH
Confidence 99888877766655 55554443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=7.1e-31 Score=251.54 Aligned_cols=347 Identities=15% Similarity=0.083 Sum_probs=236.8
Q ss_pred HHHHHHHhhhhhhchhhhHHHHHHhhcccccc--cchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (407)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 123 (407)
..++.+..+++...++..+|.+.++++.+... .......|++.+++.+|..++++++|+++||+|||++++++.+++.
T Consensus 17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~ 96 (491)
T 4gc0_A 17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF 96 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566777788888999999999888654322 1223448899999999999999999999999999999999999999
Q ss_pred HHHHHhh------------------ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHH
Q 015396 124 IFNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI 184 (407)
Q Consensus 124 ~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 184 (407)
++.++++ +++|++.++++|+++|++.|...+. ..+++|+.|+++|++..++.+.+..+|..
T Consensus 97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 9999888 4789999999999999999887775 99999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhh--hhhhhch-
Q 015396 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS- 261 (407)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~- 261 (407)
+++.++..+.. ..++.... .+.|+.++....+..++.++..+++||+|++...+++.++..+ ++.....
T Consensus 177 ~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 177 LVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 99999888876 33333332 4567777788888888888888899999987544333322221 1110000
Q ss_pred -----hhhhh--hhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHH
Q 015396 262 -----AEVKE--EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF 334 (407)
Q Consensus 262 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 334 (407)
.+.++ .+.+........++.+..........+...........+..+.... .+.+...........++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-----LGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----SSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-----cCCCccchhhHHHHHHH
Confidence 00000 0111111222333344444443333333333222222222222221 45666666667777778
Q ss_pred HHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhhhh--h--hh-------HhhhhhhHHHHHHHhhcCCCC
Q 015396 335 SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--F--GL-------AFLLNCASVVKNLLSSSGPGS 403 (407)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-------~~~~~~~~~~~~~~~~~~p~~ 403 (407)
...++.. +..++.||+|||+.+..+.....++++.+........ . .. ....+..+....+.+|++|++
T Consensus 324 ~~~~~~~-~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~ 402 (491)
T 4gc0_A 324 INLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402 (491)
T ss_dssp HHHHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred HHHHHHH-HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence 8888874 8899999999999999888887777665544322111 0 00 111122234567889999999
Q ss_pred CCC
Q 015396 404 KRS 406 (407)
Q Consensus 404 ~rs 406 (407)
.|+
T Consensus 403 ~R~ 405 (491)
T 4gc0_A 403 IRG 405 (491)
T ss_dssp THH
T ss_pred HHH
Confidence 885
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=3.6e-29 Score=231.31 Aligned_cols=260 Identities=16% Similarity=0.249 Sum_probs=218.3
Q ss_pred HHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (407)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 123 (407)
+.++...+...+....+.+.+|.+.+++|.++.+ .+++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 4466777888888999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015396 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (407)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 202 (407)
++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++++.+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------- 149 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence 99999999999999999999999999888776 9999999999999999999999999999999999999987
Q ss_pred cccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396 203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (407)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (407)
.++|+..+.+.++..++..+ ..+++||+++++++++ +.....++.+++
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 198 (375)
T 2gfp_A 150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN 198 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence 34455555777766655544 4556777654432211 122355678888
Q ss_pred chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP 353 (407)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (407)
|+++...+..++.......+..+.|.|..+. +|+++.+.+.+.....++.+++.. +.+++.||.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~ 264 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9998888888887777777777777666543 788999999999999999999885 78888888887
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=1.3e-26 Score=222.01 Aligned_cols=339 Identities=14% Similarity=0.135 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhHHHH-HHh-----hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChH
Q 015396 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP 113 (407)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~ 113 (407)
+.++.++...+...+......+.++.+ .++ +|.+..+ .+++.+++.++..+++++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 445556666666666666666666644 444 8999999 9999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc--hhhhhHHHHHHHHHHHHHHHHhh
Q 015396 114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG 190 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~ 190 (407)
++..+.++..++.+++++++|++.++++|++.|++.+...+. .++++|++|+++ |+.++++++.+.++|..++|.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887775 999999999988 77788889999999999999999
Q ss_pred hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc-ccCCCCCC---CCcchhhhhhhhhhh-------
Q 015396 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHN---DDDDSCDVSYDALES------- 259 (407)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~---~~~~~~~~~~~~~~~------- 259 (407)
+.+.+ ..+|+.++++.++..++..+...+. |+..++.. +++.+.++..+..+.
T Consensus 167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 230 (491)
T 4aps_A 167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG 230 (491)
T ss_dssp HHHHH----------------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred HHHHh----------------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence 99988 3445555577666555544443322 32221111 111111111010000
Q ss_pred -----------chhhhhh-------------------hhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhc
Q 015396 260 -----------ASAEVKE-------------------EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA 309 (407)
Q Consensus 260 -----------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (407)
...+.++ ..++......+..+....+...+..++...........++.|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4aps_A 231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA 310 (491)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 0000000 0000111111111222233344444444444455555666666
Q ss_pred cCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH-----HHHHHHHHHHhhhhHHHhh-------
Q 015396 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAML------- 377 (407)
Q Consensus 310 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------- 377 (407)
.+. .+.+....+.......++..++.. +.+++.||++||+... .+..+..+++..+......
T Consensus 311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 311 AER-----VDSSWFPVSWFQSLNPLFIMLYTP-FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp HHS-----CCCSSSCSGGGTTHHHHHHHHHHH-HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred HHH-----hccCccCHHHHhccchHHHHHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 554 455545667777777888888774 7788999999876544 6777777776665553311
Q ss_pred hhhhh---Hhhhhh-----hHHHHHHHhhcCCCCCCCC
Q 015396 378 SGFGL---AFLLNC-----ASVVKNLLSSSGPGSKRSC 407 (407)
Q Consensus 378 ~~~~~---~~~~~~-----~~~~~~~~~~~~p~~~rs~ 407 (407)
..... ....+. .........+.+|++.|+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 11111 111111 2234667889999998863
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=5.5e-24 Score=199.28 Aligned_cols=293 Identities=11% Similarity=0.129 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (407)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~ 119 (407)
+.++.+....+...+......+.+|.+. +++|.++.+ .|++.+.+.++..++++++|+++||+|||++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~ 80 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4555555666666667777788888655 568999999 999999999999999999999999999999999888
Q ss_pred HHHHHHH---HHhhccchH-HHHHHHHHHHhhhccchhHH-HHHHhhhccc--cchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396 120 ASVVIFN---TLFGLSVNF-WMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGF 192 (407)
Q Consensus 120 ~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~ 192 (407)
.+.+++. ....+++.. ..++..+++.|++.+...+. .....++.++ ++|+...+......++|..++|.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~ 160 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 7765432 111222221 12344566666655543332 3344444433 456777777777888999999999999
Q ss_pred hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (407)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (407)
+.+ .+ |+.++++.++..++..+..++.+|++++..+++++.+ ++.++...
T Consensus 161 l~~--------~~---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 210 (417)
T 2cfq_A 161 MFT--------IN---------NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------ANHSAFSL 210 (417)
T ss_dssp HHH--------HC---------SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS-------------SCCCCCCH
T ss_pred HHH--------hc---------hhHHHHHHHHHHHHHHHHHHHcCcccccccccccccc-------------cccccccH
Confidence 875 12 4444455544444333333444433221110000000 00000111
Q ss_pred cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (407)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 352 (407)
...++++++++++...+..++.......+..++|.|+.+... ..+.+....+.......++..++.. +.+++.||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g 287 (417)
T 2cfq_A 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA--TGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIG 287 (417)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 234567788888776665454444444444556766643311 1234455677888888888888874 8899999999
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 015396 353 PIMVARIAGVLTIPLLTSYP 372 (407)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~ 372 (407)
+|+.+..+..+.++..+.+.
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 288 GKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998888777776655544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=2.8e-22 Score=193.42 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=142.1
Q ss_pred HHHHHHHHHHhhhhhhchhhhHH-HHHHhhc------ccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-CChHH
Q 015396 43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV 114 (407)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~ 114 (407)
++.+....++..+......+.++ ++.+++| .+..+ .+++.+++.++..+++++.|+++||+ |||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33455566666666666667776 4567789 99998 99999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHH---HHHHHHHHHHHHHHh
Q 015396 115 IIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPAL 189 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~ 189 (407)
+..+.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+. .+.+.++|..++|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999998887775 9999999999999876666 889999999999999
Q ss_pred hhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHh
Q 015396 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF 234 (407)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (407)
++.+.+ ..+|+.++.+.++..++..+..+
T Consensus 168 ~~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 168 MPLLLK----------------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp STHHHH----------------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence 999987 44455555777666555544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=7.6e-15 Score=138.45 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc--CChHHHHH
Q 015396 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM 117 (407)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~~~~ 117 (407)
+.++...+..++............|.+.++ +|.+..+ .+++.+...++..++.++.|++.||+ |||+.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 445556666666777777778888877766 8999888 99999999999999999999999999 99999888
Q ss_pred HHHHHH-HHHHHhhcc--chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHH-HHHHHHHhhhh
Q 015396 118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF 192 (407)
Q Consensus 118 ~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~ 192 (407)
+.++.. ++.++..+. .+.+.+.+..++.|++.+...+. ..++.|.+|+++|++++++.+....+ |..++|.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766 666666665 36788888888999987776665 89999999999999999999999999 99999999999
Q ss_pred hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc
Q 015396 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (407)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (407)
+.+ ..+|...+++.++..++..+..+++
T Consensus 406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998 4455666677777666655554444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.50 E-value=2.2e-13 Score=127.96 Aligned_cols=144 Identities=10% Similarity=0.044 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhhhhhhchhhhHHHH-HHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396 43 LFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (407)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~ 120 (407)
++...+..++............|.+ .++ +|.+..+ .++..+...++..++.++.|+++||+|||+++..+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~ 333 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYAL 333 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3444445555555556666777766 555 5999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (407)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (407)
+..++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 334 IAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 999998888888887665544 7888887777775 88889999966 888888776 566999999999999998
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.48 E-value=2.3e-13 Score=127.14 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhh
Q 015396 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI 162 (407)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~ 162 (407)
.++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+ ...++.|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888889999999999999999999998888888887888888888888887788877665555 48899999
Q ss_pred ccccchhhhhHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCC
Q 015396 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL 240 (407)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~ 240 (407)
+|++.|+++.+. ++....+|..++|.++|++.+ ..++...+.+.++..++..+. .+..||++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999998 488888999999999999987 334455556666666655544 34455433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=2e-12 Score=123.24 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=122.4
Q ss_pred HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (407)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 124 (407)
......+......+.+....+.+.+..+.+... .........+...++.++.+++.||+|||+.++.+.....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 334444444555666666777888888877766 66667777888899999999999999999999988888777
Q ss_pred HHHHhhcc-----chHHHHHHHH-HHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396 125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (407)
Q Consensus 125 ~~~~~~~~-----~~~~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 198 (407)
+.+..+.. ++...+.... +..+++.+.....+.+.+|.+|.+.|++++++......+|..+++.+.+.+.+..
T Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~- 433 (491)
T 4gc0_A 355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS- 433 (491)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 76655432 2222222222 2233333333334899999999999999999999999999999988877765410
Q ss_pred CCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCC
Q 015396 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHR 242 (407)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~ 242 (407)
+... ..++...+++.++.+++.. +.++++||++.+
T Consensus 434 ------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 434 ------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp ------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred ------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 0000 1223344456666655544 456789998764
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.35 E-value=5.9e-12 Score=120.06 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=111.8
Q ss_pred HHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH-----HH
Q 015396 45 SIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MG 118 (407)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~-----~~ 118 (407)
.++...+............+|.+.++ ++.+..+ .++..+...++..++.++.|++.||+|||+... .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 34444444455555556666755544 6666556 788888888999999999999999999986654 67
Q ss_pred HHHHHHHHHHhhccc---------hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHH
Q 015396 119 TASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (407)
Q Consensus 119 ~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 188 (407)
.++.+++.++..... +.+.+++..++.|++.+...+. ..++.|.+|+++|++++++.+....+|..++|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766665532 6777888888999988886664 999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 015396 189 LGGFLAQ 195 (407)
Q Consensus 189 ~~~~l~~ 195 (407)
+.+.+.+
T Consensus 441 ~~~~~~~ 447 (491)
T 4aps_A 441 LVTLYNA 447 (491)
T ss_dssp HGGGGGG
T ss_pred HHHHHhc
Confidence 9998875
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.06 E-value=1.8e-11 Score=112.39 Aligned_cols=146 Identities=13% Similarity=0.069 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396 41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (407)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~ 119 (407)
+.++...+..++............|.+.+ ++|.++.+ .+++.+...++..++.++.|++.||+|++. ..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~ 270 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV 270 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34445555556666666666667775544 48998888 999999999999999999999999998732 2232
Q ss_pred HH-HHHHHH--Hhhc--cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396 120 AS-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (407)
Q Consensus 120 ~~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 193 (407)
.. ...+.. .... .++.+.+++..++.|++.+...+. .+++.|.+| ++|+++.++.+....+|..++|.+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 271 ICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222 1111 236777778888999988887775 899999998 8999999999999999999999999998
Q ss_pred cC
Q 015396 194 AQ 195 (407)
Q Consensus 194 ~~ 195 (407)
.+
T Consensus 350 ~~ 351 (375)
T 2gfp_A 350 PQ 351 (375)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.85 E-value=1.1e-08 Score=98.16 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcc----cccCC----hHHHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHh
Q 015396 84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG 146 (407)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~G~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G 146 (407)
.+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 56666666677777788887775 55543 356677778888877776663 36777888889999
Q ss_pred hhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (407)
Q Consensus 147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 195 (407)
++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998887775 8999999999999999999999999999999999999886
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=42.37 E-value=7 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=10.9
Q ss_pred hhhhcccccCChHH
Q 015396 101 FWGLVADRYGRKPV 114 (407)
Q Consensus 101 ~~G~l~dr~Grr~~ 114 (407)
++|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788899999864
Done!