BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015401
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGD 171
D P ++L+PG D V L++ +RV+V N RG G SP P F + D
Sbjct: 29 DGPAILLLPGWC---HDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKD 85
Query: 172 MQEVVAHVGSK--YPKAHLYAVGWSL 195
E++ +G + P +H + GW L
Sbjct: 86 ALEILDQLGVETFLPVSHSHG-GWVL 110
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGD 171
D P ++L+PG D V L++ +RV+V N RG G SP P F + D
Sbjct: 26 DGPAILLLPGWC---HDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKD 82
Query: 172 MQEVVAHVGSK--YPKAHLYAVGWSL 195
E++ +G + P +H + GW L
Sbjct: 83 ALEILDQLGVETFLPVSHSHG-GWVL 107
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQE 174
VLI L G S + R +L ++G+RV+ ++ RG G S + +F D+
Sbjct: 27 VLIHGYPLDGHSWERQTRELL----AQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHT 82
Query: 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS 210
V+ + + + VG+S+G L RY+ H
Sbjct: 83 VLETLDLR----DVVLVGFSMGTGELARYVARYGHE 114
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 16/240 (6%)
Query: 124 GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY 183
GG+ ++ H + + G+R + F++RG G + F + + + D ++ +
Sbjct: 53 GGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATE-NAEGFTTQTMVADTAALIETLDI-- 109
Query: 184 PKAHLYAVGWSLGANILIRYLGHESHSCP---LSGAVSLCNPFNLVIADQDFRKGFNIVY 240
A VG S+GA ++ E +S AV + L A Q F K +Y
Sbjct: 110 --APARVVGVSMGA-----FIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELY 162
Query: 241 DKALASALCRIFKKHALLFEDMGGEFNIPLAANAKSVRQFDDGLTRVSFGFKXXXXXXXX 300
D + L + A L E+ + A + F + + G +
Sbjct: 163 DSGVQ--LPPTYDARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQ 220
Query: 301 XXXXXXIKHVRIPLLCIQAQNDPIAPSRGIPCEDIKANPNCLLILTPKGGHLGWVAGPEA 360
+++ P+L I +D + P + E A PN + P GHLG+ PEA
Sbjct: 221 TNRLPAYRNIAAPVLVIGFADDVVTPPY-LGREVADALPNGRYLQIPDAGHLGFFERPEA 279
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ 162
P + P L ++ G GG ++YV L+ +G+RVV F+ RG G S + PQ
Sbjct: 22 PVEGPALFVLHGGPGG--NAYVLREGLQDYLEGFRVVYFDQRGSGRS-LELPQ 71
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 307 IKHVRIPLLCIQAQNDPIAPS 327
++ V +P L IQA++DPIAP+
Sbjct: 233 LREVTVPTLVIQAEHDPIAPA 253
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 110 PPDS--PVLILMPGLTGGSEDSYV-RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ--FY 164
PPD P+++L+ G E Y RH + G+RVV + RG G S Q +
Sbjct: 28 PPDQQGPLVVLLHGF---PESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYR 84
Query: 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223
+GD+ V+ G++ + VG GA + + C +G V + PF
Sbjct: 85 IKELVGDVVGVLDSYGAE----QAFVVGHDWGAPVAWTFAWLHPDRC--AGVVGISVPF 137
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 110 PPDS--PVLILMPGLTGGSEDSYV-RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ--FY 164
PPD P+++L+ G E Y RH + G+RVV + RG G S Q +
Sbjct: 22 PPDQQGPLVVLLHGF---PESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYR 78
Query: 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223
+GD+ V+ G++ + VG GA + + C +G V + PF
Sbjct: 79 IKELVGDVVGVLDSYGAE----QAFVVGHDWGAPVAWTFAWLHPDRC--AGVVGISVPF 131
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 104 GDH----QLLPPDS------PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153
GDH Q+ P++ P+++L G G +YV ++ A G V+ ++ GC
Sbjct: 36 GDHETWVQVTTPENAQPHALPLIVLHGG--PGMAHNYVANIAALADETGRTVIHYDQVGC 93
Query: 154 GDS---PVTTPQFYSAS-FLGDMQEVVAHVGSKYPKAHLYAVGWS--LGANILIR 202
G+S P F++ F+ + V +G + + H+ W LGA I +R
Sbjct: 94 GNSTHLPDAPADFWTPQLFVDEFHAVCTALGIE--RYHVLGQSWGGMLGAEIAVR 146
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 11 RLIRPITSVHVSTKAMPYNHPHPSLE----VTGGALHTFLPALKTLSRPYSPF 59
R + ++ + + ++ +P HP+ + GGALH L+ L RP PF
Sbjct: 70 RTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPF 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,754,651
Number of Sequences: 62578
Number of extensions: 539060
Number of successful extensions: 1026
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 26
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)