Query 015404
Match_columns 407
No_of_seqs 134 out of 447
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4160 BPI/LBP/CETP family pr 100.0 1.1E-52 2.5E-57 427.7 43.5 387 8-407 5-404 (492)
2 cd00025 BPI1 BPI/LBP/CETP N-te 100.0 2.1E-45 4.6E-50 339.5 28.4 220 34-260 1-223 (223)
3 smart00328 BPI1 BPI/LBP/CETP N 100.0 1.7E-45 3.6E-50 340.9 26.0 221 38-264 1-225 (225)
4 PF02886 LBP_BPI_CETP_C: LBP / 100.0 2.4E-30 5.2E-35 242.0 16.3 155 249-407 1-160 (238)
5 PF01273 LBP_BPI_CETP: LBP / B 100.0 4.9E-28 1.1E-32 213.5 23.3 161 43-216 1-163 (164)
6 smart00329 BPI2 BPI/LBP/CETP C 99.9 8.6E-26 1.9E-30 205.6 17.3 123 284-407 1-128 (202)
7 cd00026 BPI2 BPI/LBP/CETP C-te 99.9 6.3E-25 1.4E-29 199.5 16.8 120 287-407 1-123 (200)
8 cd00264 BPI BPI/LBP/CETP domai 99.9 4.1E-22 9E-27 182.5 23.8 201 34-258 1-208 (208)
9 cd00264 BPI BPI/LBP/CETP domai 99.3 2.9E-11 6.3E-16 110.6 11.7 117 287-407 1-121 (208)
10 PF06585 JHBP: Haemolymph juve 98.4 3.4E-05 7.4E-10 72.5 20.0 182 42-226 41-244 (248)
11 smart00700 JHBP Juvenile hormo 98.4 0.00026 5.6E-09 65.6 24.4 183 41-226 16-219 (225)
12 PF14613 DUF4449: Protein of u 89.7 1.2 2.6E-05 38.9 6.7 54 170-223 2-56 (164)
13 PF10296 DUF2404: Putative int 49.6 62 0.0013 25.1 6.0 25 46-70 16-40 (91)
14 PF14356 DUF4403: Domain of un 46.7 3.3E+02 0.0072 27.7 15.3 138 99-258 276-419 (427)
15 TIGR02610 PHA_gran_rgn putativ 41.6 1.2E+02 0.0026 23.8 6.4 30 177-206 61-90 (91)
16 PF09650 PHA_gran_rgn: Putativ 31.2 88 0.0019 24.2 4.2 24 182-205 63-86 (87)
17 PF02251 PA28_alpha: Proteasom 24.9 1.9E+02 0.0041 21.0 4.7 32 192-223 10-41 (64)
18 PF02532 PsbI: Photosystem II 23.6 36 0.00078 21.6 0.6 30 6-35 5-34 (36)
19 CHL00024 psbI photosystem II p 22.7 31 0.00068 21.8 0.2 29 7-35 6-34 (36)
20 PF03032 Brevenin: Brevenin/es 22.6 55 0.0012 22.2 1.4 20 4-23 3-22 (46)
No 1
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]
Probab=100.00 E-value=1.1e-52 Score=427.66 Aligned_cols=387 Identities=28% Similarity=0.415 Sum_probs=338.9
Q ss_pred hHHH-HHHhhcceeeeccccCCCCCCceEEEEeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecE
Q 015404 8 LPLL-LLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNI 86 (407)
Q Consensus 8 ~~~~-~~~~~~~~~~~~~~~~~~~~~pGi~vrlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i 86 (407)
++++ -++..+.++....+.+ .+||+++|++++|++|+++.+...+++++.++++||+.+++..++.|++.|.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i 81 (492)
T KOG4160|consen 5 LPFLVVLLLLLLLSLLSAAEA---HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSI 81 (492)
T ss_pred hhHHHHHHHHHhccccchhcc---cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecce
Confidence 4444 3334444444445555 68999999999999999999999999999999999999999998889999999999
Q ss_pred EEEEEEeCCeeeee-CCceEEEEEeCceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-e-cCCeeEE
Q 015404 87 TIYNIDVLSSYVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-T-QKGTLKL 163 (407)
Q Consensus 87 ~I~~~~~p~~~i~~-p~~gi~l~i~~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~-~~G~p~v 163 (407)
+|.++..+...+++ ++.++.|++.++++.+.+.|.+ .. |++ ..+|++++.++|+++.+.+.+. + .+|+|.+
T Consensus 82 ~i~~~~~~s~~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~-~~~----~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v 155 (492)
T KOG4160|consen 82 KILRFSVPSSQLSLVPQAGLSWSITNANISLSGRWKA-RT-RFL----ALGGQVDASVKGMDIQINLSLGSDIGDGKPAV 155 (492)
T ss_pred eEEeccccccceeecCCceEEEEEeeEEEEEeeeeEe-EE-EEE----ecCCeeEEEeecceEEEeeeeeccCCCCccee
Confidence 99999999999999 7789999999999999999999 43 342 3459999999999999999996 5 8999999
Q ss_pred EEEeeeEEeccEEEEEeCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccceEEEeeecc
Q 015404 164 SLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPKEIPVDDHASLNITFVD 242 (407)
Q Consensus 164 ~~~~C~~~i~~v~i~~~g~~s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i~-~ln~~L~tlp~~~~i~~~~~idy~l~~ 242 (407)
+...|.+.+.++++.+++..+|+++.|.+.+.+.||..++.++|+++++.++ ++|.++++.|+..++|+...+||++++
T Consensus 156 ~~~~C~~~~~~l~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~ 235 (492)
T KOG4160|consen 156 SDSSCSAAISDLHVQMGSLASWLIQLFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLG 235 (492)
T ss_pred eeecceeEeeeeEeecCCCcHHHHHHHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEecc
Confidence 9999999999999988866999999999999999999999999999999995 899999999999999999999999999
Q ss_pred CCeeecceeEEeeeEEEEe-ccCCCCCCCCCCCCCCCcCCCCCCCeEEEEEchhhHhHHHHHHHhcCceeEEe-c-cCCC
Q 015404 243 NPLLTSSSIEFDINGLFTA-RKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV-D-KVPD 319 (407)
Q Consensus 243 ~P~it~~~i~~~l~g~~~~-~~~~~~~p~~~~~~p~~~~~~~~~~m~~~~lSey~~NS~~~~~~~~g~l~~~i-~-~iP~ 319 (407)
+|.+|+++++++++|++++ .++...+ ++.|.....++++++|+++++|||++||+++++|++|.|++++ + +.|.
T Consensus 236 ~P~~t~~~i~l~~~G~i~~~~~~~~~~---~~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~ 312 (492)
T KOG4160|consen 236 PPAITSSYIELDLKGEIFYSLGQVTPP---FPLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPV 312 (492)
T ss_pred CCceecceEEEeeeeeEEeccCCCCCc---ccCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCc
Confidence 9999999999999999999 4444433 2222222334446899999999999999999999999999999 3 4444
Q ss_pred Cc--ccccc--hhhhhhHHHHhcCCCCceEEEEeeCCCcEEEEEeCCEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEe
Q 015404 320 QS--LLNTA--GWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLSIVLE 394 (407)
Q Consensus 320 ~~--~L~Ts--~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~l~~~~~~~~~v-~~~~~~~~lf~l~~~~~~~ 394 (407)
++ .++|+ |+|.++|+++++|||+++++++++..+|.|.|++++..+...+.+.+++ .++++..++++++++++.
T Consensus 313 ~~~~~~~~~~~c~g~~lp~l~~~~Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~- 391 (492)
T KOG4160|consen 313 DSLKLLTTSGFCIGDLLPELAEQYPNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANV- 391 (492)
T ss_pred ccccccccceeechhhhHHHHHHCCCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEE-
Confidence 44 56666 4677999999999999999999999999999999999999999998875 455699999999999999
Q ss_pred EEEEEEecceecC
Q 015404 395 TCITNINGILMMG 407 (407)
Q Consensus 395 ~~~~~i~~~kl~g 407 (407)
.+++++.++++.|
T Consensus 392 ~~~~~~~~~~l~g 404 (492)
T KOG4160|consen 392 SATLSLSGNKLIG 404 (492)
T ss_pred EEEEEEeeeeEEE
Confidence 9999999999986
No 2
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=2.1e-45 Score=339.50 Aligned_cols=220 Identities=32% Similarity=0.488 Sum_probs=212.2
Q ss_pred eEEEEeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecEEEEEEEeCCeeeee-CCceEEEEEeCc
Q 015404 34 FTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAYGT 112 (407)
Q Consensus 34 Gi~vrlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i~I~~~~~p~~~i~~-p~~gi~l~i~~~ 112 (407)
|+++|||+|||+|+++++++.+++++.++++||++++.+++++|+++|+++|++|+++++|++++++ |++|+.+.++++
T Consensus 1 Gi~~rlt~~gL~y~~~~~~~~~~~~l~~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s~l~~~~~~gi~~~~s~~ 80 (223)
T cd00025 1 GAVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSSSIKLVEVKGLDLSISNV 80 (223)
T ss_pred CeEEEEcHHHHHHHHHHHHHHHHHHhhcCCCCCccCccccccccEEEEEEEeEEEEEEecCCCceEEcCCCceEEEEeCC
Confidence 7999999999999999999999999999999999999999888999999999999999999999999 999999999999
Q ss_pred eEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-ecCCeeEEEEEeeeEEeccEEEEEeCCchhhHHHHH
Q 015404 113 TCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMI 191 (407)
Q Consensus 113 ~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~ 191 (407)
++.++++|+|++. + +.++|.+++.++|+++++.+.++ +..|+|+++..+|++++++++++|+|+++|+||.|.
T Consensus 81 si~l~~~w~~~~~--~----i~~~G~~~l~v~gv~i~~~l~l~~d~~G~p~v~~~~C~~~v~~~~i~l~gg~~~l~~~f~ 154 (223)
T cd00025 81 SIGLSGVWKYNYR--F----ILDGGNVELSVEGMNIQADLRLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFM 154 (223)
T ss_pred eEEEEEEEEEeeE--E----EEecEEEEEEEeEEEEEEEEEEeeCCCCCeEEEeCCCCcccCcEEEEEeCChHHHHHHHH
Confidence 9999999999985 4 58999999999999999999997 667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccceEEEeeeccCCeeecceeEEeeeEEEE
Q 015404 192 NAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT 260 (407)
Q Consensus 192 ~~~~~~I~~~l~~~iC~~i~~~i~-~ln~~L~tlp~~~~i~~~~~idy~l~~~P~it~~~i~~~l~g~~~ 260 (407)
+.+++.+++.+++++|++++..++ ++|.+|+ +|+.+|+|+.+.+||+|+++|.++++|++++++|+||
T Consensus 155 ~~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~-lp~~~~vd~~~~idysl~~~P~~t~~~l~~~~kg~f~ 223 (223)
T cd00025 155 NFIESLLKKVLKGQLCPVIDASLVSMLESLLQ-LPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223 (223)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC-CceEeccCCcEEEEEEeecCCccccceeeeeeeEEEC
Confidence 999999999999999999999986 6788888 9999999999999999999999999999999999996
No 3
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=100.00 E-value=1.7e-45 Score=340.93 Aligned_cols=221 Identities=20% Similarity=0.370 Sum_probs=213.6
Q ss_pred EeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecEEEEEEEeCCeeeee-CCceEEEEEeCceEEE
Q 015404 38 IISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAYGTTCNL 116 (407)
Q Consensus 38 rlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i~I~~~~~p~~~i~~-p~~gi~l~i~~~~i~l 116 (407)
|||++||+|++++++.++++++.++++||+++++++|++|+++|++++++|+++++|.+++++ |+.|+.|+++|+++.+
T Consensus 1 rit~~gL~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~v~~~~~~i~I~~~~~~~s~~~~~p~~Gi~l~is~~si~~ 80 (225)
T smart00328 1 RITQKGLDYAAQEGALALQKELPKITIPDIRGDFAIKLLGIGHYSIYSLSISRLELPSSQLRFQPSKGLRLSISNLSLRV 80 (225)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCcCceecccccEEEEEEEEEEEEeccCCCCccccCCCCceEEEEcCceEEE
Confidence 799999999999999999999999999999999999988999999999999999999999999 9999999999999999
Q ss_pred EEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-ecCCeeEEEEEeeeEEeccEEEEEeCC-chhhHHHHHHHH
Q 015404 117 SANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAF 194 (407)
Q Consensus 117 sg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~g~-~s~l~n~f~~~~ 194 (407)
+|+|+|++. + |.++|.+++.++++++++.+.++ +.+|+|++++.+|++++++++++++|+ ++|+||.|.+.+
T Consensus 81 ~~~~~~~~~--~----i~~~G~~~~~v~~~~i~~~l~l~~~~~G~p~v~~~~C~~~i~~v~l~~~G~~~swl~n~f~~~i 154 (225)
T smart00328 81 SGDLKGSLN--F----IKLEGNFQLSVEGLSISADLRIESNPTGRPTVTLSSCSSSIGDVRLHFSGSVLGWLINLFRKFI 154 (225)
T ss_pred EEEEEEEEE--E----EEeeeEEEEEEeeEEEEEEEEeccCCCCCeeEEeCCcccCcceEEEEEECCchHHHHHHHHHHH
Confidence 999999974 4 68999999999999999999996 899999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceEEEeeeccCCeeecceeEEeeeEEEEeccC
Q 015404 195 EEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKK 264 (407)
Q Consensus 195 ~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idy~l~~~P~it~~~i~~~l~g~~~~~~~ 264 (407)
++.||..++++||++|++.+ +++|.+|+++|+.+++|+...+||+|+++|.++++|++++++|+||+.++
T Consensus 155 ~~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp~~~~vd~~~~idysl~~~p~~t~~~l~~~~kg~f~~~~~ 225 (225)
T smart00328 155 ENTLRNVLEGQICPVIDSAVSNKMNDYLQTLPLSISLDSLIGVDYSLVSPPRVTAEFLDVRLKGKFFWKNH 225 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeecceeEEeeecccCCcccccccccccceeEEeCCC
Confidence 99999999999999999998 58999999999999999999999999999999999999999999999763
No 4
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=99.97 E-value=2.4e-30 Score=242.03 Aligned_cols=155 Identities=25% Similarity=0.369 Sum_probs=130.2
Q ss_pred ceeEEeeeEEEEeccCCCCCCCCCCCCCCCcCCCCCCCeEEEEEchhhHhHHHHHHHhcCceeEEe--ccCCCCc--ccc
Q 015404 249 SSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLN 324 (407)
Q Consensus 249 ~~i~~~l~g~~~~~~~~~~~p~~~~~~p~~~~~~~~~~m~~~~lSey~~NS~~~~~~~~g~l~~~i--~~iP~~~--~L~ 324 (407)
+|+|+++||+|++.+++.++| +++|....++++++|+++|+|||++||++|+||++|+|++++ +++|+.+ .+|
T Consensus 1 ~~~e~~~kGe~~~~~~~~~~~---~~~~~~~~~~~~~~Ml~~~iSey~~NS~~~~~~~~g~l~~~it~~~~p~~~~~~l~ 77 (238)
T PF02886_consen 1 NYLETDHKGEFFPLNHHSPPP---FPPPVLPLPNSSSRMLYFWISEYVFNSLLYAAYQAGALDFTITPDMLPKSSPLLLT 77 (238)
T ss_dssp SEEEEEE--EEEETTSB---S---S--EE-GGGS-SSSSEEEEEEHHHHHHHHHHHHHTT-SEEEEEHHHCHCCHCHTTB
T ss_pred CccccccceeEEcCCCCCCCC---CCCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCceEEEEecCccccccccccc
Confidence 589999999999999877664 333322234677899999999999999999999999999999 7999875 789
Q ss_pred cchhhhhhHHHHhcCCCCceEEEEeeCCCcEEEEEeCCEEEEEEEEEEEEEe-CCCceeeEEEEEEEEEEeEEEEEEecc
Q 015404 325 TAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVL-ESGEVIPVACISLSIVLETCITNINGI 403 (407)
Q Consensus 325 Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~l~~~~~~~~~v~-~~~~~~~lf~l~~~~~~~~~~~~i~~~ 403 (407)
|.|+|.++|||+++|||+++++++++.++|.|+|+++++++.+.+++++++. ++++..++|++++++++ +++++++++
T Consensus 78 T~~~g~~iP~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~~~~i~~~ 156 (238)
T PF02886_consen 78 TSCIGDLIPELAKKYPNSPVELKIRSTKPPVVTISPGGVTVSLSGSVEVFVVPPNSSKVPLFSLNVDTSA-DVQLSISNN 156 (238)
T ss_dssp HCCCCTCCCCHHHCSCC-CEEEEEEESS--EEEEETTEEEEEEEEEEEEEEE-TTCGCEEEEEEEEEEEE-EEEEEEETT
T ss_pred cccHHhhhhhHHhcCCCCeEEEEEEeCCCCEEEEEcCcEEEEEEEEEEEEEecCCCceEEEEEEEEEEEE-EEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999864 56689999999999999 999999999
Q ss_pred eecC
Q 015404 404 LMMG 407 (407)
Q Consensus 404 kl~g 407 (407)
||.|
T Consensus 157 ~l~~ 160 (238)
T PF02886_consen 157 KLTG 160 (238)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9976
No 5
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=99.96 E-value=4.9e-28 Score=213.54 Aligned_cols=161 Identities=28% Similarity=0.494 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecEEEEEEEeCCeeeee-CCceEEEEEeCceEEEEEEEE
Q 015404 43 GLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAYGTTCNLSANWF 121 (407)
Q Consensus 43 gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i~I~~~~~p~~~i~~-p~~gi~l~i~~~~i~lsg~~~ 121 (407)
||+|+++++.+++++++.+++|||+.++++.+++|++.|++++++|+++++|+.++++ |++|+.+.+.++++.++++|.
T Consensus 1 gL~y~~~~~~~~l~~~l~~~~ipdi~~~~~~~~~g~~~~~i~~i~I~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 80 (164)
T PF01273_consen 1 GLDYANQVGIQILQKELQKIQIPDISGSFSSPFIGSVKYNISNIKISNFRLPQSSLELSPDGGIVLSIIPASASLSGNWP 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----EEEEECETTTCCEEEEEEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhhcCCCCCcccccccccccceEEEEEeEEEEEeecCCccceECCCCceEEEEeeeEEEEEEEEe
Confidence 8999999999999999999999999999998878999999999999999999999999 999999999999999999999
Q ss_pred EEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-ecCCeeEEEEEeeeEEeccEEEEEeCCchhhHHHHHHHHHHHHHH
Q 015404 122 YEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVS 200 (407)
Q Consensus 122 ~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~~~~~~~I~~ 200 (407)
+.. ++++ . +.++++++++.++ +.+|+|++.+.+|++++++++++++|+.+|+||.|.+.+++.|++
T Consensus 81 ~~~--~~i~----~-------~~~v~i~~~i~l~~~~~G~~~v~~~~C~~~i~~v~i~~~gg~~~l~~~~~~~l~~~i~~ 147 (164)
T PF01273_consen 81 YKG--GFIK----I-------AVGVDISVTIRLERDESGRPTVVVGSCSSDIGSVDIKLHGGASWLYNLFINFLSKSIRS 147 (164)
T ss_dssp EEE--CCEE----E-------EEEEEEEEEEEEEEECCTEEEEEEEEEEEEEEEEEEEETTCGCCHHHHHHHHTHHHHHH
T ss_pred cCC--Chhh----h-------eeeEEEEEEEEEEEcCCCCeEEEECCCccCcceEEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 985 3532 2 5578899999996 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015404 201 AVENAITKKLKEGISK 216 (407)
Q Consensus 201 ~l~~~iC~~i~~~i~~ 216 (407)
.+++++|++++..++.
T Consensus 148 ~l~~~iC~~i~~~l~~ 163 (164)
T PF01273_consen 148 LLQKKICPVINSLLSN 163 (164)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhcchHhHHhhcC
Confidence 9999999999888754
No 6
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain
Probab=99.94 E-value=8.6e-26 Score=205.61 Aligned_cols=123 Identities=22% Similarity=0.421 Sum_probs=116.5
Q ss_pred CCCeEEEEEchhhHhHHHHHHHhcCceeEEe--ccCCCCc--ccccchhhhhhHHHHhcCCCCceEEEEeeCCCcEEEEE
Q 015404 284 QSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVA 359 (407)
Q Consensus 284 ~~~m~~~~lSey~~NS~~~~~~~~g~l~~~i--~~iP~~~--~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~ 359 (407)
+++|+|+|+|||++||++|+||++|.|++++ +++|+.+ +|||+|||.++|||+++|||++|++++++.++|.|+|+
T Consensus 1 ~~~Mv~i~lSey~~NS~~~~~~~ag~l~~~it~~~ip~~~~~~lnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~ 80 (202)
T smart00329 1 SDRMVYLALSEYFFNSLLFVYQQAGALKLTITDDMLPKESKFLLTTCCFGTLVPEVAEQYPDSTLQLEISVLSPPRVTLQ 80 (202)
T ss_pred CCeEEEEEecHHHHhHHHHHHHHCCcceEEeccccCCCcCccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEe
Confidence 3689999999999999999999999999999 7999984 99999999999999999999999999999999999999
Q ss_pred eCCEEEEEEEEEEEEEe-CCCceeeEEEEEEEEEEeEEEEEEecceecC
Q 015404 360 EDNIDATVHADLIIDVL-ESGEVIPVACISLSIVLETCITNINGILMMG 407 (407)
Q Consensus 360 ~~~~~l~~~~~~~~~v~-~~~~~~~lf~l~~~~~~~~~~~~i~~~kl~g 407 (407)
++++++.+.+.+++++. ++++..++|++++++++ ++++++.++||.|
T Consensus 81 ~~~~~v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~-~~~~~~~~~~l~g 128 (202)
T smart00329 81 PGGATVYIHASVKVFAILPDSSRASLFLMSVDTNV-SAKSSFKTKKLLG 128 (202)
T ss_pred cCCEEEEEeEEEEEEEeCCCCCcceEEEEEEEEEE-EEEEEEeCCEEEE
Confidence 99999999999999865 45579999999999999 9999999999976
No 7
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.93 E-value=6.3e-25 Score=199.54 Aligned_cols=120 Identities=27% Similarity=0.424 Sum_probs=113.5
Q ss_pred eEEEEEchhhHhHHHHHHHhcCceeEEe--ccCCCCcccccchhhhhhHHHHhcCCCCceEEEEeeCCCcEEEEEeCCEE
Q 015404 287 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNID 364 (407)
Q Consensus 287 m~~~~lSey~~NS~~~~~~~~g~l~~~i--~~iP~~~~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 364 (407)
|+|+|+|||++||++++||++|.|++++ +++|...+|||+.||.++||++++|||+++++++++.+||.++|++++++
T Consensus 1 M~~~~~se~~~nSa~~~~~~ag~l~~~it~~~~p~~~~LnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~~~~~~ 80 (200)
T cd00026 1 MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQQLKISVSSPPHLVLSEGGAT 80 (200)
T ss_pred CEEEEEeHHHHhHHHHHHhhCCeEEEEEeCCcCCcccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEecCCEE
Confidence 8999999999999999999999999999 57886679999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEeC-CCceeeEEEEEEEEEEeEEEEEEecceecC
Q 015404 365 ATVHADLIIDVLE-SGEVIPVACISLSIVLETCITNINGILMMG 407 (407)
Q Consensus 365 l~~~~~~~~~v~~-~~~~~~lf~l~~~~~~~~~~~~i~~~kl~g 407 (407)
+++.+++++++.+ +++..++|++++++++ +++++++++||.|
T Consensus 81 v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~-~~~~~~~~~kL~g 123 (200)
T cd00026 81 LAQQLDVEIFATLPDSQLRPLFRLGVDTSS-SAQLSVSKKKLIG 123 (200)
T ss_pred EEEEEEEEEEEeCCCCccceEEEEEEEEEE-EEEEEEeCCEEEE
Confidence 9999999998765 5467999999999999 9999999999986
No 8
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.90 E-value=4.1e-22 Score=182.46 Aligned_cols=201 Identities=21% Similarity=0.323 Sum_probs=182.5
Q ss_pred eEEEEeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeec-----eeeeEEEEEecEEEEEEEeCCeeeee-CCceEEE
Q 015404 34 FTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIP-----ILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVF 107 (407)
Q Consensus 34 Gi~vrlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~-----~~G~v~~~ls~i~I~~~~~p~~~i~~-p~~gi~l 107 (407)
|+++|+++++|+|+++.+.+..+. +..++.|++++..+++ ..|.+.|..++++|+.+..+..++++ | +|+.+
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~-~g~~~ 78 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGAL-LLTLTIPDIPKALKLKLSGIIPLGAKKYPDMNLQLKILSLSSPTLKLSP-KGLDL 78 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHh-hcCcccCCCCCccccccccccceEEEEeeCCceEEEEEecCCCeEEEec-CCEEE
Confidence 589999999999999999999998 8889999999987763 36999999999999999999999999 7 89999
Q ss_pred EEeCceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEEecCCeeEEEEEeeeEEeccEEEEEeCCchhhH
Q 015404 108 VAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLY 187 (407)
Q Consensus 108 ~i~~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~~~~G~p~v~~~~C~~~i~~v~i~~~g~~s~l~ 187 (407)
.+. +++.+.+.|.++ ++|.+++.++ +++++.+++...+|++++....|.+++++++++++|
T Consensus 79 ~~~-~~i~~~~~~~~~-----------~~~~~~~~l~-v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g------ 139 (208)
T cd00264 79 SQS-VSIELFVTWPAS-----------DGGNPLFSLE-VEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGG------ 139 (208)
T ss_pred EEE-EEEEEEEEeccC-----------CCCCEEEEEE-EEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEec------
Confidence 999 999999999764 4677788887 888888898744499999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccceEEEeeeccCCeeecceeEEeeeEE
Q 015404 188 QGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGL 258 (407)
Q Consensus 188 n~f~~~~~~~I~~~l~~~iC~~i~~~i~-~ln~~L~tlp~~~~i~~~~~idy~l~~~P~it~~~i~~~l~g~ 258 (407)
|.+.+.+.+++.+++++|+.+...++ +++..++.+|+ +|++....+||++++.|.++++|++++++|.
T Consensus 140 --~~~~~~~~l~~~l~~~lc~~v~~~~n~~l~~~l~l~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 140 --FGNFIVSLLQKVLNTILCPVVLPALNSKLRSGLPLLPV-PPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCCc-cCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 56678899999999999999999985 68889999999 9999999999999999999999999999873
No 9
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.28 E-value=2.9e-11 Score=110.59 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=103.3
Q ss_pred eEEEEEchhhHhHHHHHHHhcCceeEEe--ccCCCCcccccchhhhhhHHHHhcCCCCceEEEEeeCCCcEEEEEeCCEE
Q 015404 287 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNID 364 (407)
Q Consensus 287 m~~~~lSey~~NS~~~~~~~~g~l~~~i--~~iP~~~~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 364 (407)
|+++++|||++|++.++++++|.+...+ .++|+...+.++ .++|+++.+||+..++++.....+|.+.++++++.
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~~g~~ 77 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGALLLTLTIPDIPKALKLKLS---GIIPLGAKKYPDMNLQLKILSLSSPTLKLSPKGLD 77 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHhhcCcccCCCCCccccccc---cccceEEEEeeCCceEEEEEecCCCeEEEecCCEE
Confidence 8999999999999999999999987666 577766544444 79999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCC-ceeeEEEEEEEEEEeEEEEEEecceecC
Q 015404 365 ATVHADLIIDVL-ESG-EVIPVACISLSIVLETCITNINGILMMG 407 (407)
Q Consensus 365 l~~~~~~~~~v~-~~~-~~~~lf~l~~~~~~~~~~~~i~~~kl~g 407 (407)
+.+.+++++++. +++ +..+.|.++++++. ++++...++|+++
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~l~v~~~~-~~~l~~~~g~l~~ 121 (208)
T cd00264 78 LSQSVSIELFVTWPASDGGNPLFSLEVEISA-SLQLSVDPGRLTL 121 (208)
T ss_pred EEEEEEEEEEEEeccCCCCCEEEEEEEEEEE-EEEEEeeCCEEEE
Confidence 999999999754 554 78999999999999 9999999988764
No 10
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=98.43 E-value=3.4e-05 Score=72.46 Aligned_cols=182 Identities=17% Similarity=0.195 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCcc--------ceeeeceeeeEEEEEecEEEEEEEe---CCeeeeeCCceEEEEEe
Q 015404 42 TGLDFVKDLLITKAISSIIPLALPKIE--------RAVKIPILGNVRMVLSNITIYNIDV---LSSYVKPGDTGVVFVAY 110 (407)
Q Consensus 42 ~gl~y~~~~~~~~l~~~l~~~~iPdi~--------~~~~~~~~G~v~~~ls~i~I~~~~~---p~~~i~~p~~gi~l~i~ 110 (407)
+-+..+.+...+.+.+-++.+.+|.+. ....-. ..++...+.|+++++++- .+.++.+....+.+.+.
T Consensus 41 ~cl~~~~~~~~~~l~~Gip~l~ip~ldPl~i~~~~~~~~~~-~~~~~~~~~n~~i~Gls~~~v~~~~~d~~~~~~~~~~~ 119 (248)
T PF06585_consen 41 ECLRESIENFRPYLAKGIPELGIPPLDPLYIPEIDINFNSG-PINLKANFKNVKIYGLSNFEVNKVSVDLKKLKLNFDLT 119 (248)
T ss_dssp HHHHHHHHHHHHHHTCEBGGGTBEETTTEEEEEEEEEE-TT-CTTEEEEEEEEEEESGGG-EEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCcccCCCCCCCEEecceEEEeecC-CceEEEEEEeEEEeccCCcEEEEEEEcCCCcEEEEEEE
Confidence 334445555566666655554555443 221000 123456778888775443 22233333455666665
Q ss_pred CceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE--ecCC--eeEEEEEeeeEEeccEEEEEeCC----
Q 015404 111 GTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE--TQKG--TLKLSLVDCGCYVKDISIKLDGG---- 182 (407)
Q Consensus 111 ~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~--~~~G--~p~v~~~~C~~~i~~v~i~~~g~---- 182 (407)
=-.+.+.|+|+..-...++| ++.+|.+++.+.++++...+... ..+| +++++..++..+++++++++.+-
T Consensus 120 ~P~l~i~g~Y~~~g~i~~~p--i~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~~~~~~~~nl~~g~ 197 (248)
T PF06585_consen 120 FPKLSIKGKYEIDGKILLLP--ISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLGNVKFDLENLFNGN 197 (248)
T ss_dssp E-EEEEEEEEEEEEEECCEC--CCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEECEEEEEESHHHHHH
T ss_pred EEEEEEEEEEEEeeeeeeeE--EeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEeceEEEEeeccCCCC
Confidence 33788889988886543467 78999999999999998888774 3344 56666666677789999999753
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCc
Q 015404 183 --ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPK 226 (407)
Q Consensus 183 --~s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~ 226 (407)
++...|-|.+..-..+-+.+...+-..+...+ ..+|+.|..+|.
T Consensus 198 ~~l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~ 244 (248)
T PF06585_consen 198 KELSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPY 244 (248)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34445555444444455555555555555555 457888888875
No 11
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=98.39 E-value=0.00026 Score=65.57 Aligned_cols=183 Identities=19% Similarity=0.282 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCcc----ceeeeceee----eEEEEEecEEEEEEEeCCe-eeee--CCceEEEEE
Q 015404 41 QTGLDFVKDLLITKAISSIIPLALPKIE----RAVKIPILG----NVRMVLSNITIYNIDVLSS-YVKP--GDTGVVFVA 109 (407)
Q Consensus 41 ~~gl~y~~~~~~~~l~~~l~~~~iPdi~----~~~~~~~~G----~v~~~ls~i~I~~~~~p~~-~i~~--p~~gi~l~i 109 (407)
.+-+.-+.+.+.+.+.+-++.+.||.+. ....+. .+ .+...++|+++++++--.. +++. .+..+.+.+
T Consensus 16 ~~Ci~~~~~~~~~~~~~G~Pe~gip~ldPl~i~~~~i~-~~~~~~~~~~~~~n~~i~Gl~~~~i~~~~~~~~~~~~~~~~ 94 (225)
T smart00700 16 SECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKIS-IGSGVIGLRLTFKNVKIYGLSNFEITKFKMDLKDKKIELKI 94 (225)
T ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCcCCEEeeeEEEe-cCCCceEEEEEEEEeEEEcCcceEEEEEEecCCCcEEEEEE
Confidence 4555555666667777766666666543 111111 12 3567888888887643221 2333 344566666
Q ss_pred eCceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-ecCC--eeEEEEEeeeEEeccEEEEEeCC----
Q 015404 110 YGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKG--TLKLSLVDCGCYVKDISIKLDGG---- 182 (407)
Q Consensus 110 ~~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~~~G--~p~v~~~~C~~~i~~v~i~~~g~---- 182 (407)
.=-.+.+.|+|..+-+...+| |+.+|.+++.++++++.+.+... ..+| ++++...++...++++++++.+-
T Consensus 95 ~~p~l~~~g~Y~~~g~ll~lp--i~g~G~~~~~l~n~~~~~~~~~~~~~~g~~yl~i~~~~~~~~~~~~~~~~~NLfngn 172 (225)
T smart00700 95 EFPKLNVKGDYKLDGRLLGLP--LNGKGDANFTLENVKIRGTLKLKLGPDGKTYLKIKSLKVNFEVGDVKSHLDNLFNGN 172 (225)
T ss_pred ECCcEEEEeeeEeeeEEEEEE--ecCCCcEEEEEEeeEEEEEEEEEEccCCeEEEEEEEEEEEEEeceEEEEeeccCCCC
Confidence 654688889998875433456 88999999999999988887774 2256 68888888899999999988753
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCc
Q 015404 183 --ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPK 226 (407)
Q Consensus 183 --~s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~ 226 (407)
++...|.|.+.--..+-+.++..+.+++...+ ..+|+.+..+|.
T Consensus 173 ~~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~ 219 (225)
T smart00700 173 KDLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPI 219 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 35567777777777788888888888887777 568999998885
No 12
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=89.66 E-value=1.2 Score=38.89 Aligned_cols=54 Identities=19% Similarity=0.379 Sum_probs=46.3
Q ss_pred EEeccEEEEEeCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015404 170 CYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQS 223 (407)
Q Consensus 170 ~~i~~v~i~~~g~-~s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i~~ln~~L~t 223 (407)
+++.+++|.+..+ ...||.+|...+.+.+|..|++.|-..|+..+++++..|-.
T Consensus 2 V~i~~L~ikikkSkHklL~~~fKPll~~~vR~alqKalE~qIr~~~~~~D~~l~~ 56 (164)
T PF14613_consen 2 VDIDNLKIKIKKSKHKLLFKLFKPLLLKVVRPALQKALEKQIRDAFEKLDRFLYD 56 (164)
T ss_pred cccccceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4678899999877 78899999999999999999999999999988877776643
No 13
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=49.57 E-value=62 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccce
Q 015404 46 FVKDLLITKAISSIIPLALPKIERA 70 (407)
Q Consensus 46 y~~~~~~~~l~~~l~~~~iPdi~~~ 70 (407)
..++...+.|++++.+++.|.+-++
T Consensus 16 ~~~~~i~~~L~~kL~~i~~P~fl~~ 40 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNKIKLPSFLDE 40 (91)
T ss_pred HHHHHHHHHHHHHHccccCCCccCc
Confidence 4667788899999999887776544
No 14
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=46.68 E-value=3.3e+02 Score=27.66 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred eeC-CceEEEEEeCceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-ecCCeeEEEEEeeeEEeccEE
Q 015404 99 KPG-DTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDIS 176 (407)
Q Consensus 99 ~~p-~~gi~l~i~~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~ 176 (407)
.|+ ..+.++.+.++++.-+++ .+.+. +.++..+.-+ .-.|+|......=...+.+++
T Consensus 276 ~f~~~~~~~v~v~~v~v~g~~~--------------------rl~i~-~~~~g~~~G~i~l~G~P~yD~~~~~l~l~dld 334 (427)
T PF14356_consen 276 TFSFSGGKKVTVKSVSVYGSGD--------------------RLVIA-LDVTGSLNGTIYLSGRPVYDPATQTLRLEDLD 334 (427)
T ss_pred ccccCCCceEEEEEEEEEecCC--------------------cEEEE-EEEEEEEEEEEEEEEEEEECCCCCEEEEEeeE
Q ss_pred EEEeCCchhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccCCcccccccceEEEeeeccCCeeecceeE
Q 015404 177 IKLDGGASWLYQGMINAFEEQIVSAVENA----ITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIE 252 (407)
Q Consensus 177 i~~~g~~s~l~n~f~~~~~~~I~~~l~~~----iC~~i~~~i~~ln~~L~tlp~~~~i~~~~~idy~l~~~P~it~~~i~ 252 (407)
+.+... +++.+.-.-.+++.|++.|+++ +-+.+.+.-+.+++.|......-.+.-.+.++=-=.....++++.|.
T Consensus 335 ~~~~t~-~~l~~~a~wl~~~~i~~~i~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~gv~l~g~~~~l~~~~i~~~~~~l~ 413 (427)
T PF14356_consen 335 FDLDTK-NFLLKTAAWLLHGRIRKAIEEKLVFDLGPQLEEAKKKINAALANYKPAPGVRLNGKVDSLRLDDIQVTPDGLV 413 (427)
T ss_pred EEeccc-chHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEceeEEeeEEEcCCEEE
Q ss_pred EeeeEE
Q 015404 253 FDINGL 258 (407)
Q Consensus 253 ~~l~g~ 258 (407)
+-.+.+
T Consensus 414 ~~~~a~ 419 (427)
T PF14356_consen 414 VQVNAE 419 (427)
T ss_pred EEEEEe
No 15
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=41.58 E-value=1.2e+02 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=21.5
Q ss_pred EEEeCCchhhHHHHHHHHHHHHHHHHHHHH
Q 015404 177 IKLDGGASWLYQGMINAFEEQIVSAVENAI 206 (407)
Q Consensus 177 i~~~g~~s~l~n~f~~~~~~~I~~~l~~~i 206 (407)
+++.-.++|+...|...+++.|++.+.+.+
T Consensus 61 v~v~v~Lg~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 61 IRVTAELGMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred EEEEEEhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445789999988888777777776654
No 16
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=31.25 E-value=88 Score=24.19 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=17.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Q 015404 182 GASWLYQGMINAFEEQIVSAVENA 205 (407)
Q Consensus 182 ~~s~l~n~f~~~~~~~I~~~l~~~ 205 (407)
.++|+...|...+++.|++.+.+.
T Consensus 63 ~Lg~Ll~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 63 KLGFLLSPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhh
Confidence 457998888777777777776654
No 17
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=24.89 E-value=1.9e+02 Score=21.02 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015404 192 NAFEEQIVSAVENAITKKLKEGISKLDSLLQS 223 (407)
Q Consensus 192 ~~~~~~I~~~l~~~iC~~i~~~i~~ln~~L~t 223 (407)
+.|...+.+.-++.+|..+...|.++|++|++
T Consensus 10 ~~fr~~l~~eAE~Lv~~~fP~KI~eLd~lLk~ 41 (64)
T PF02251_consen 10 DEFRQSLTKEAENLVSNFFPQKIVELDELLKS 41 (64)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHhcC
Confidence 45778888888999999999999999999987
No 18
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=23.58 E-value=36 Score=21.56 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=20.5
Q ss_pred hhhHHHHHHhhcceeeeccccCCCCCCceE
Q 015404 6 KILPLLLLLITSSFFSSQAQVGASNQESFT 35 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pGi 35 (407)
|++.-......+++|..+--..+|.+|||=
T Consensus 5 K~~Vy~vV~ffv~LFifGflsnDp~RnP~r 34 (36)
T PF02532_consen 5 KIFVYTVVIFFVSLFIFGFLSNDPGRNPGR 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSSSSS
T ss_pred EEeehhhHHHHHHHHhccccCCCCCCCCCC
Confidence 444445555666777777777888899973
No 19
>CHL00024 psbI photosystem II protein I
Probab=22.68 E-value=31 Score=21.82 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=18.6
Q ss_pred hhHHHHHHhhcceeeeccccCCCCCCceE
Q 015404 7 ILPLLLLLITSSFFSSQAQVGASNQESFT 35 (407)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~pGi 35 (407)
++.-......+++|..+--..+|.+|||=
T Consensus 6 i~Vy~vV~ffvsLFifGFlsnDp~RnP~r 34 (36)
T CHL00024 6 LFVYTVVIFFVSLFIFGFLSNDPGRNPGR 34 (36)
T ss_pred eeehhHHHHHHHHHHccccCCCCCCCCCC
Confidence 33334445556666667777788899973
No 20
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.55 E-value=55 Score=22.16 Aligned_cols=20 Identities=40% Similarity=0.343 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHhhcceeeec
Q 015404 4 LSKILPLLLLLITSSFFSSQ 23 (407)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (407)
|-|-|.+|+.++++.|+...
T Consensus 3 lKKsllLlfflG~ISlSlCe 22 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCE 22 (46)
T ss_pred chHHHHHHHHHHHcccchHH
Confidence 56889999999998887653
Done!