BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015405
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Y175|UBAX1_ARATH UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis
thaliana GN=At4g15410 PE=2 SV=1
Length = 421
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/422 (57%), Positives = 298/422 (70%), Gaps = 25/422 (5%)
Query: 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATA---SPEASQSVA 63
E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN AAA A +
Sbjct: 4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSS 63
Query: 64 TLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATG 123
T+ SPS S+SP +PS + + + A Y LRSR G+ ++ + +G
Sbjct: 64 TIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAP-YGLRSRGGAGENKETENPSG 122
Query: 124 --TSR-----GGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVD 176
+SR G IRT ADLNR+P G SD D E +YYTGG+KSGM+VQDP K VD
Sbjct: 123 IRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVD 180
Query: 177 EIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN----VSHNITFWR 232
E+F+QARQSAV+RP + S+S +FTG ARLLSGE VSS+P + + H ITFW
Sbjct: 181 ELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWL 240
Query: 233 NGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPK 292
NGFTV+DGPLRG DP NA+F+ SI RSECP ELEPADKK VHV+L+ +R E+++EPPK
Sbjct: 241 NGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLV-RRGENFTEPPK 299
Query: 293 RRSAFQGVGRTLGGSDSPASAA-------LNTAPSPSSGLVVDATLPTTSVQLRLADGTR 345
++ FQGVGRTLG S S +S+A +N AP+PS GLVVD PTTS+QLRLADGTR
Sbjct: 300 PKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTR 359
Query: 346 MVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQ 405
+V+RFN+HHT+RD+ FIDASRPG ++ YQL MGFPPKQLT+LDQT+EQAGIAN+VVIQ
Sbjct: 360 LVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQ 419
Query: 406 KL 407
K
Sbjct: 420 KF 421
>sp|Q54BQ5|NSF1C_DICDI NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c
PE=3 SV=1
Length = 415
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 151/440 (34%), Positives = 218/440 (49%), Gaps = 70/440 (15%)
Query: 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAV 68
+S I +F IT ++K+E+ F+LESH W+L+ A TF T E +Q
Sbjct: 4 HSEAIATFQSITGASKEESTFYLESHDWDLEKAAQTF------TTLQEEENQR------- 50
Query: 69 NSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRP-GKKEDKKAATGTSRG 127
++ P R P PA+ R Y S+P K KKA G G
Sbjct: 51 -----NDQPQIEEDYEDEEEEDDHRDPMPAS-RPVY-----SKPVAKTVSKKAPAGGRVG 99
Query: 128 GIRTLADLNRTPPGGADSDDDDDEP----QQYYTGGEKSGMLVQD-PTKGNQ------VD 176
GIRTL+D N D D DD+ QQY+TGGEKSG++V+ P KG V+
Sbjct: 100 GIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVN 159
Query: 177 EIFNQAR--------QSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN--VSH 226
++F+ A+ + VE+PD S S + A VS P + V
Sbjct: 160 DVFDSAKRHGAVASNEKKVEKPD---SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEV 216
Query: 227 NITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELE-PADKKTRVHVELINKREE 285
+TFW GFT+DDGPLR D+P N L+ I R PREL+ A + V LIN +
Sbjct: 217 KVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQ 276
Query: 286 DYSEPPK-RRSAFQGVGRTLG----------------GSDSPASAALNTAPSPSSGLVVD 328
DY EP K + AF G G+TLG + + ++ T+ S + VD
Sbjct: 277 DYVEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTSTTTTSTPNVSSINVD 336
Query: 329 ATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTD 388
+ PTT+VQ+RLA+G+R+ FNH HT++D+ +I++S GS +++ L GFP K +T+
Sbjct: 337 QSQPTTTVQIRLANGSRLSTTFNHSHTLQDVINYINSSS-GSNQSFDL-LTGFPQKPVTN 394
Query: 389 -LDQTVEQAGIANSVVIQKL 407
T++ AG+ N+++IQKL
Sbjct: 395 PTSTTLKDAGLLNALLIQKL 414
>sp|Q5ZK10|NSF1C_CHICK NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1
Length = 369
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 190/410 (46%), Gaps = 64/410 (15%)
Query: 13 INSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPS 72
+ FV +T + ++ A FFLES W+L A+++F ++ + + TLP S
Sbjct: 8 LREFVAVTGAEEERARFFLESAGWDLQIALASFYEDG--------GDEDILTLPQPTPSS 59
Query: 73 LSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTL 132
+S + S S RD + ++ + A G+ R G + +
Sbjct: 60 VSRGTAASDHRVTS-------------FRDLVHAQEDDDEEEEGQRFYAGGSERSGQQIV 106
Query: 133 ADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDL 192
+ P ++ + + G ++ G + D T A+ S
Sbjct: 107 GPPRKKSP--------NELVEDLFKGAKEHGAVAVDRT-----------AKSSG------ 141
Query: 193 RASSSSKAFTGTARLLSGETVSSAPAPPPENVSHN--------ITFWRNGFTVDDGPLRG 244
SS K F G L G T A HN + W+ GF++D G LR
Sbjct: 142 -ESSKPKPFAGGGYRL-GATPEEESAYVAGERRHNSVQDVHVVLKLWKTGFSLDSGELRS 199
Query: 245 MDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTL 304
DP+NA FL+ I R E P EL + +V++++ + R+E+Y +P AF G G+ L
Sbjct: 200 YQDPSNAQFLDDIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKL 259
Query: 305 G-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIR 357
G + SPA A N A + SS + +D + P T++Q+RLADG R+V +FNH+H IR
Sbjct: 260 GSTAPQVLSTSSPAQQAENEAKA-SSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIR 318
Query: 358 DIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
DI FI +RP A + FP K+LTD +QT+++A + N+V++Q+L
Sbjct: 319 DIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQRL 368
>sp|Q9CZ44|NSF1C_MOUSE NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1
Length = 370
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 194/421 (46%), Gaps = 72/421 (17%)
Query: 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATL 65
AE + FV +T + +D A FFLES W+L A+++F ++ + + T+
Sbjct: 2 AEERQDALREFVAVTGTEEDRARFFLESAGWDLQIALASFYEDG--------GDEDIVTI 53
Query: 66 PAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTS 125
S +T S S +PS +R S RD + ++ + A G+
Sbjct: 54 ----------SQATPSSVSRGTAPSDNRVTS---FRDLIHDQDEEEEEEEGQRFYAGGSE 100
Query: 126 RGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQS 185
R G + + PP + + VD++F A++
Sbjct: 101 RSGQQIVG-----PP--------------------------RKKSPNELVDDLFKGAKEH 129
Query: 186 ---AVERPDLRASSSSK--AFTGTARLLSGETVSSAPAPPPENVSHN-------ITFWRN 233
AVER +SK F G L + E H+ + W+
Sbjct: 130 GAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKT 189
Query: 234 GFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKR 293
GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P
Sbjct: 190 GFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGA 249
Query: 294 RSAFQGVGRTLG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRM 346
AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLADG R+
Sbjct: 250 FKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGRL 308
Query: 347 VARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 406
V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q+
Sbjct: 309 VQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
Query: 407 L 407
L
Sbjct: 369 L 369
>sp|O35987|NSF1C_RAT NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1
Length = 370
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 194/421 (46%), Gaps = 72/421 (17%)
Query: 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATL 65
AE + FV +T + +D A FFLES W+L A+++F ++ + + T+
Sbjct: 2 AEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG--------GDEDIVTI 53
Query: 66 PAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTS 125
S +T S S +PS +R S RD + ++ + A G+
Sbjct: 54 ----------SQATPSSVSRGTAPSDNRVTS---FRDLIHDQDEEEEEEEGQRFYAGGSE 100
Query: 126 RGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQS 185
R G + + PP + + VD++F A++
Sbjct: 101 RSGQQIVG-----PP--------------------------RKKSPNELVDDLFKGAKEH 129
Query: 186 ---AVERPDLRASSSSK--AFTGTARLLSGETVSSAPAPPPENVSHN-------ITFWRN 233
AVER +SK F G L + E H+ + W+
Sbjct: 130 GAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKT 189
Query: 234 GFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKR 293
GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P
Sbjct: 190 GFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGA 249
Query: 294 RSAFQGVGRTLG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRM 346
AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLADG R+
Sbjct: 250 FKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGRL 308
Query: 347 VARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 406
V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q+
Sbjct: 309 VQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
Query: 407 L 407
L
Sbjct: 369 L 369
>sp|Q0KL01|UBX2B_MOUSE UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1
SV=2
Length = 331
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 151/271 (55%), Gaps = 16/271 (5%)
Query: 152 PQQYYTGGEK-SGMLVQDPTKGNQVDEIFNQARQ-SAVERPDLRASS---SSKAFTGTAR 206
P + Y+G K G+ + P G V+E+F +AR+ AV + SS +K+FTG
Sbjct: 61 PHRLYSGDHKYDGLHIVQPPTGKIVNELFKEAREHGAVPLNEATRSSREDKTKSFTGGGY 120
Query: 207 LLSGETVSSAPAPPPEN----VSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSEC 262
L + EN V + WRNGF++DDG LR DP NA FLES+ R E
Sbjct: 121 RLGNSFYKRSEYIYGENQLQDVQVLLKLWRNGFSLDDGELRPYSDPTNAQFLESVKRGET 180
Query: 263 PRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP- 321
P EL+ +V++++ + ++++Y +P R AF G G+ LG S +P + ++P
Sbjct: 181 PLELQRLVHGAQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-SLTPEIVSTPSSPEEE 239
Query: 322 -----SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQL 376
++ +++D ++PTT +Q+RLADG+R+V RFN H I D+ FI SRP A +
Sbjct: 240 DKSILNAAVLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFI 299
Query: 377 QAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
FP K+LTD T+++A I N+V++Q+L
Sbjct: 300 LVTSFPSKELTDETVTLQEADILNTVILQQL 330
>sp|Q5RBG3|NSF1C_PONAB NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1
Length = 370
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 150/279 (53%), Gaps = 25/279 (8%)
Query: 153 QQYYTGG-EKSGMLVQDPTKGNQ----VDEIFNQARQS---AVERPDLRASSSSKA--FT 202
Q++Y GG E+SG + P + VD++F A++ AVER +SK F
Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA 151
Query: 203 GTARLLSGETVSSAPAPPPENVSHN-------ITFWRNGFTVDDGPLRGMDDPANASFLE 255
G L + E H+ + W++GF++D+G LR DP+NA FLE
Sbjct: 152 GGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE 211
Query: 256 SIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------D 308
SI R E P EL +V++++ + R+ED+ +P AF G G+ LG +
Sbjct: 212 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS 271
Query: 309 SPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRP 368
SPA A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI FI +RP
Sbjct: 272 SPAQQAENEAKASSS-ILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP 330
Query: 369 GSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
A + FP K+L D QT+++A + N+V++Q+L
Sbjct: 331 AMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
>sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2
Length = 370
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 150/279 (53%), Gaps = 25/279 (8%)
Query: 153 QQYYTGG-EKSGMLVQDPTKGNQ----VDEIFNQARQS---AVERPDLRASSSSKA--FT 202
Q++Y GG E+SG + P + VD++F A++ AVER +SK F
Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA 151
Query: 203 GTARLLSGETVSSAPAPPPENVSHN-------ITFWRNGFTVDDGPLRGMDDPANASFLE 255
G L + E H+ + W++GF++D+G LR DP+NA FLE
Sbjct: 152 GGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE 211
Query: 256 SIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------D 308
SI R E P EL +V++++ + R+ED+ +P AF G G+ LG +
Sbjct: 212 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS 271
Query: 309 SPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRP 368
SPA A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI FI +RP
Sbjct: 272 SPAQQAENEAKASSS-ILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP 330
Query: 369 GSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
A + FP K+L D QT+++A + N+V++Q+L
Sbjct: 331 AMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
>sp|Q3SZC4|NSF1C_BOVIN NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1
Length = 370
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 149/279 (53%), Gaps = 25/279 (8%)
Query: 153 QQYYTGG-EKSGMLVQDPTK----GNQVDEIFNQARQS---AVERPDLRASSSSKA--FT 202
Q++Y GG E+SG + P + VD++F A++ AVER +SK F
Sbjct: 92 QRFYAGGSERSGQQIVGPPRKRSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA 151
Query: 203 GTARLLSGETVSSAPAPPPENVSHN-------ITFWRNGFTVDDGPLRGMDDPANASFLE 255
G L + E H+ + W+ GF++D+G LR DP+NA FLE
Sbjct: 152 GGGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGELRSYQDPSNAQFLE 211
Query: 256 SIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLG-------GSD 308
SI R E P EL +V++++ + R+ED+ +P AF G G+ LG +
Sbjct: 212 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTS 271
Query: 309 SPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRP 368
SPA A N A + SS + +D + PTT++Q+RLADG R+V +FNH H I DI FI +RP
Sbjct: 272 SPAQQAENEAKASSS-ISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP 330
Query: 369 GSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
A + FP K+L D +QT+++A + N+V++Q+L
Sbjct: 331 AMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRL 369
>sp|P0C627|UBX2B_RAT UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b
PE=1 SV=1
Length = 331
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 150/271 (55%), Gaps = 16/271 (5%)
Query: 152 PQQYYTGG-EKSGMLVQDPTKGNQVDEIFNQARQ-SAVERPDLRASSS---SKAFTGTAR 206
P + Y+G E G+ + P G V+E+F +AR+ AV + SSS +K+FTG
Sbjct: 61 PLRLYSGDQEYGGLHIAQPPTGKIVNELFKEAREHGAVPLNEATRSSSDDKAKSFTGGGY 120
Query: 207 LLSGETVSSAPAPPPEN----VSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSEC 262
L + EN V + W NGF++DDG LR DP NA FLES+ R E
Sbjct: 121 RLGSSFYKRSEYIYGENQLQDVQILLRLWSNGFSLDDGELRPYSDPTNAQFLESVKRGEI 180
Query: 263 PRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP- 321
P EL+ ++V +++ + ++++Y +P R AF G G+ LG S +P + ++P
Sbjct: 181 PLELQRLVHGSQVSLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-SLTPEIVSTPSSPEEE 239
Query: 322 -----SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQL 376
++ +++D ++PTT +Q+RLADG+R++ RFN H I D+ FI SRP A +
Sbjct: 240 DKSILNAAVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFI 299
Query: 377 QAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
FP K+LTD T++ A I N+V++Q+L
Sbjct: 300 LVTSFPSKELTDESVTLQDADILNTVILQQL 330
>sp|Q14CS0|UBX2B_HUMAN UBX domain-containing protein 2B OS=Homo sapiens GN=UBXN2B PE=1
SV=1
Length = 331
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 149/271 (54%), Gaps = 16/271 (5%)
Query: 152 PQQYYTG-GEKSGMLVQDPTKGNQVDEIFNQARQSAV----ERPDLRASSSSKAFTGTAR 206
PQ++Y+ E SG+ + P+ G V+E+F +AR+ E SK+FTG
Sbjct: 61 PQRFYSSEHEYSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGY 120
Query: 207 LLSGETVSSAPAPPPEN----VSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSEC 262
L + EN V + W NGF++DDG LR ++P NA FLES+ R E
Sbjct: 121 RLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEI 180
Query: 263 PRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP- 321
P EL+ +V++++ + ++++Y +P R AF G G+ LG S +P + ++P
Sbjct: 181 PLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-SLTPEIVSTPSSPEEE 239
Query: 322 -----SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQL 376
++ +++D ++PTT +Q+RLADG+R++ RFN H I D+ FI SRP A +
Sbjct: 240 DKSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFI 299
Query: 377 QAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
FP K+LTD T+ +A I N+V++Q+L
Sbjct: 300 LVTSFPNKELTDESLTLLEADILNTVLLQQL 330
>sp|Q5ZLK2|UBX2B_CHICK UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2
SV=1
Length = 365
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 153/278 (55%), Gaps = 21/278 (7%)
Query: 148 DDDEPQQYYTG-GEKSGMLV----QDPTKGNQVDEIFNQARQSAVERPDLRASSS----- 197
DD E Q++Y+G E G+ + +P+K V E+F +A++ D + +S
Sbjct: 90 DDKENQRFYSGDSEYRGLQIWGASNNPSK--IVAELFKEAKEHGAVPLDEASRTSGDFSK 147
Query: 198 SKAFTGTARLLSGETVSSAPAPPPEN--VSHNITFWRNGFTVDDGPLRGMDDPANASFLE 255
+K+F+G L + + EN V + WRNGF++DDG LR DP NA FLE
Sbjct: 148 AKSFSGGGYRLGDSSQKHSEYIYGENQDVQILLKLWRNGFSLDDGELRSYSDPINAQFLE 207
Query: 256 SIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAAL 315
S+ R E P +L+ +V++++ + +E++Y +P R AF G G+ LG S +P +
Sbjct: 208 SVKRGEIPVDLQRLVHGGQVNLDMEDHQEQEYVKPRLRFKAFSGEGQKLG-SLTPEIVST 266
Query: 316 NTAPSPSSG------LVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPG 369
++P +++D ++P T +Q+RLADG+R++ RFN H I+DI FI SRP
Sbjct: 267 PSSPEEEDKSILNAPVLIDDSVPATKIQIRLADGSRLIQRFNQTHRIKDIRDFIIQSRPA 326
Query: 370 SARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
A + FP K+LTD T+ +A I N+V++Q+L
Sbjct: 327 FATTDFVLVTTFPNKELTDESLTLREADILNTVILQQL 364
>sp|Q0P3R5|UBX2B_XENLA UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2
SV=1
Length = 350
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 138/259 (53%), Gaps = 23/259 (8%)
Query: 169 PTKGNQVDEIFNQARQ-SAVERPDLRASSSS----KAFTGTARLLSGETV-------SSA 216
P+ G V+E+F +A++ A+ D SS + + FTG L +
Sbjct: 94 PSPGKIVNELFKEAKEHGAIPIDDTSKSSGAFYRARTFTGRGYKLGDSSKREFEYMQGED 153
Query: 217 PAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVH 276
P + + + W NGF++DDG LR DP NA FLES+ + E P EL+ +V+
Sbjct: 154 PFEQGQEIQILLKLWSNGFSLDDGELRSYSDPINAEFLESVKKGEIPVELQRLVHGGQVN 213
Query: 277 VELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP--------SSGLVVD 328
+++ + ++++Y +P + AF G G+ LG S ++T SP ++ + +D
Sbjct: 214 LDMEDHQDQEYIKPRLKFKAFSGEGKKLG---SVTPEIISTPSSPEEEHKRFLNAEVDLD 270
Query: 329 ATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTD 388
+PTT +Q+RLADGTR++ RFN H I D+ +FI +R A+ FP +LTD
Sbjct: 271 EHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELTD 330
Query: 389 LDQTVEQAGIANSVVIQKL 407
QT+E+A I N+V++Q+L
Sbjct: 331 ETQTLEEADILNTVILQRL 349
>sp|P0C8Q0|UBX1_EMENI UBX domain-containing protein 1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubx1
PE=3 SV=1
Length = 373
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 179/396 (45%), Gaps = 74/396 (18%)
Query: 13 INSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPS 72
++ F +T + DEA +L ++ W+L+AAV+ F S E
Sbjct: 10 VSQFCAMTRARPDEAQEYLATNGWDLEAAVTEFFAEQDETAGSSE--------------- 54
Query: 73 LSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTL 132
P+ PSA S S R S SR +P KK TL
Sbjct: 55 ----PTGQPSAKSSSSTPRESS------------SSRKQPPKK-------------FATL 85
Query: 133 ADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDL 192
DL SDDDDDE Q ++ GGEKSG+ VQ+P + +I +AR R L
Sbjct: 86 GDLASG--AADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKK--KIIEKAR-----RTQL 136
Query: 193 RASSSSK----AFTGTARLLSGETVSS-------APAPP--PENVSHNITFWRNGFTVDD 239
AS S+ FTG AR L GE S PA P P V + FW +GF+VDD
Sbjct: 137 PASDDSEPRRNYFTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDD 196
Query: 240 GPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQG 299
G L DDP NA L SI + P + A V VE I + +E Y P + F G
Sbjct: 197 GELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVE-IKQHDEKYVRPKPKYQPFAG 255
Query: 300 VGRTLG----GSDSPASAALNTAPSPSSGLV---VDATLPTTSVQLRLADGTRMVARFNH 352
G+ LG G +PA + AP SSG VD + P ++Q+RL DGTR+ +RFN
Sbjct: 256 KGQRLGSPTPGIRAPAPSEPAPAPQSSSGPPKPNVDESQPVVTLQIRLGDGTRLTSRFNT 315
Query: 353 HHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTD 388
HTI D++ F+ A+ P S + FP K+LTD
Sbjct: 316 THTIGDVYDFVSAASPQSQARPWVLLTTFPSKELTD 351
>sp|Q9UT81|UBX3_SCHPO UBX domain-containing protein 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx3 PE=1 SV=1
Length = 410
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 185/439 (42%), Gaps = 80/439 (18%)
Query: 12 LINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSP 71
++ F + + FFLES WN + A + + PE +
Sbjct: 6 ILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHE-----VIPPEEDHGL--------- 51
Query: 72 SLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRT 131
PS+ +S+ P + S S + D R R + + +GT+ T
Sbjct: 52 --------QPSSDVSKVPEVTGSSSGISGGDQQPPRPLQRQQNTQGQGMKSGTASKKFAT 103
Query: 132 LADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPT---KGNQVDEIFNQARQ---S 185
L DL +D+ +E +TGGEKSG+ V+D K V +I +ARQ S
Sbjct: 104 LRDLE-------GNDESAEEKSHLFTGGEKSGLSVEDGDPDPKKQLVRDILEKARQHTIS 156
Query: 186 AVERPDLRASSSSKAFTGTARLLSGETVSSAP-------APPPEN----------VSHNI 228
++ D SS + ++ + L E +S PP EN + +
Sbjct: 157 PLDEQDSGPSSLASSWASVGQRLGTENEASGSTTPVTQSGPPRENPPTESQPEKPLRRTL 216
Query: 229 TFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYS 288
FWRNGF+VDDGP+ DDPAN L I P L + V + ++ +EDY
Sbjct: 217 YFWRNGFSVDDGPIYTYDDPANQEMLRYINSGRAPLHLLGVSMNQPIDVVVQHRMDEDYV 276
Query: 289 EPPKRRSAFQGVGRTLGG-----------------SDSPASAALNTAP---SPSSGLVVD 328
P K F G G+ LG + + +S +N P +P + L +D
Sbjct: 277 APFK---PFSGKGQRLGSTYMQPRMSQMPGGLYTDTSTSSSVPINVKPNSTTPHASLQID 333
Query: 329 ATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT- 387
PTT +Q+RL++G R V N HT+ DI+ + A PG N+ L ++ FP K L
Sbjct: 334 ENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSPG---NFIL-SVPFPAKTLED 389
Query: 388 DLDQTVEQAGIANSVVIQK 406
D TVE A + N+ ++QK
Sbjct: 390 DPSVTVEAASLKNASLVQK 408
>sp|P34223|UBX1_YEAST UBX domain-containing protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SHP1 PE=1 SV=1
Length = 423
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 139/289 (48%), Gaps = 26/289 (8%)
Query: 142 GADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQV-DEIFNQAR---QSAVE---RPDLRA 194
G DDD+D+P+ + GGE SG+ V DP+ N + ++ +AR Q E R D
Sbjct: 135 GQADDDDEDQPRNTFAGGETSGLEVTDPSDPNSLLKDLLEKARRGGQMGAENGFRDDEDH 194
Query: 195 SSSSKAFTGTARLLSGETVSSAPAPP----------PENVSHNITFWRNGFTVDDGPLRG 244
+ FTG L G T+ +A PE V+ ITFW+ GF V DGPL
Sbjct: 195 EMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYR 253
Query: 245 MDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTL 304
DDPAN+ +L + + P +L V V + K +E Y P ++ F G G+ L
Sbjct: 254 YDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRL 313
Query: 305 G----GSDSPASAALNTAPSPSSGLVVDA--TLPTTSVQLRLADGTRMVARFNHHHTIRD 358
G G SPA N P+ + D TS+Q+R A+G R V N T++
Sbjct: 314 GSPIPGESSPAEVPKNETPAAQEQPMPDNEPKQGDTSIQIRYANGKREVLHCNSTDTVKF 373
Query: 359 IHRFIDA-SRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 406
++ + + + +RN+ L FP K +++ + T++ A + NSVV+Q+
Sbjct: 374 LYEHVTSNANTDPSRNFTLN-YAFPIKPISNDETTLKDADLLNSVVVQR 421
>sp|P68543|UBX2A_HUMAN UBX domain-containing protein 2A OS=Homo sapiens GN=UBXN2A PE=2
SV=1
Length = 259
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 205 ARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPR 264
A+ +S + VS PA + V NI W+NGFTV+D R D A+ FL SI + E P
Sbjct: 44 AQKVSSKCVS--PAEQKKQVDVNIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPS 100
Query: 265 ELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSD-SPASAALNTAPSPSS 323
EL+ K V V++ +K+ E F G G LG + S A N +
Sbjct: 101 ELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKN 160
Query: 324 GLV---VDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARN--YQLQA 378
L ++ P T++Q+ LA+G R+V +FN H + I FI+ + GS R+ + L A
Sbjct: 161 NLSAVPLNNLEPITNIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQ-GSQRSPPFSL-A 218
Query: 379 MGFPPKQLTDLDQTVEQAGIANSVVIQKL 407
P +L D T+E+A + N+V+IQ+L
Sbjct: 219 TALPVLRLLDETLTLEEADLQNAVIIQRL 247
>sp|Q99KJ0|UBX2A_MOUSE UBX domain-containing protein 2A OS=Mus musculus GN=Ubxn2a PE=2
SV=1
Length = 258
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 216 APAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRV 275
+P + V NI W+NGFTV+D R D A+ FL SI + E P EL K V
Sbjct: 54 SPTEQKKQVDVNIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELWGIFDKEEV 112
Query: 276 HVELINKREEDYSEPPKRRSAFQGVGRTLGGSD----SPASAALNTAPSPSSGLVVDATL 331
V++ +K+ E F G G LG + S A + S S + ++
Sbjct: 113 DVKVEDKKNEVCMSTKPVFQPFSGQGHRLGSATPRIVSKAKSVEVDNKSTLSAVSLNNLE 172
Query: 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARN--YQLQAMGFPPKQLTDL 389
P T +Q+ LA+G R V RFN H + I FI+ + GS R+ + L A P + D
Sbjct: 173 PITRIQIWLANGERTVQRFNVSHRVSHIKDFIEKYQ-GSQRSPPFAL-ATALPFLRFLDE 230
Query: 390 DQTVEQAGIANSVVIQKL 407
T+E+A + N+V+IQ+L
Sbjct: 231 TLTLEEADLKNAVIIQRL 248
>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1
Length = 500
Score = 39.3 bits (90), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 333 TTSVQLRLADGTRMVARFN-HHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTD-LD 390
TT +Q+R DG+R+V RFN T+R I+ I G A + + + L D L+
Sbjct: 419 TTRIQIRTGDGSRLVRRFNALEDTVRTIYEVIKTEMDGFA-DSRFTLNDHQREDLIDKLN 477
Query: 391 QTVEQAGIAN-SVVIQKL 407
T+ AG+ N S++++KL
Sbjct: 478 MTIADAGLKNSSLLLEKL 495
>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1
Length = 427
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQL-TDLDQ 391
T +Q+R+ +G R + RF+ + ++ ++ G+ + Q ++ F K L T LD
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADK--QPFSLTFQRKSLWTSLDS 410
Query: 392 TVEQAGIANSVV 403
T+++AGI N+ +
Sbjct: 411 TIKEAGIQNTAL 422
>sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2
SV=1
Length = 287
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 301 GRTLGGSDS-----PASAAL-NTAPSPSSGLVVDAT---LPTTSVQLRLADGTRMVARFN 351
R GG+ S PA A++ T PSPSS + T +Q+RL DG+ + F
Sbjct: 168 ARRFGGAGSEPISPPAEASIPATTPSPSSPVQEPPTKKEYDQCRIQVRLLDGSALSQTFR 227
Query: 352 HHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIANSVVI 404
+ + +++ + PG A FP + T D+++ +++ G+ S V+
Sbjct: 228 AREQLAAVRLYVELNWPGGAPGPFNLLTSFPRRVFTEEDMEKPLQELGLVPSAVL 282
>sp|P50636|RN19A_MOUSE E3 ubiquitin-protein ligase RNF19A OS=Mus musculus GN=Rnf19a PE=1
SV=2
Length = 840
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 61 SVATLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKA 120
+V TLP V + L NSP SA LS++ S S P P+ A D +
Sbjct: 756 AVNTLPEVENDRLENSPHQCSSALLSKAASCSDVPQPSHAADEH---------------- 799
Query: 121 ATGTSRGGIRTLADL 135
GTSR G + + DL
Sbjct: 800 --GTSRSGGKPMVDL 812
>sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=2
SV=2
Length = 297
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 298 QGVGRTLGGSDSPASAALNTAPSPSSGLVVDAT---LPTTSVQLRLADGTRMVARFNHHH 354
Q G T+G SP A + P PSS T +Q+RL DGT + F
Sbjct: 177 QKYGGTVGSRSSPP--ATDPGPVPSSPRQEPPTKREYDQCRIQVRLPDGTSLTQTFRARE 234
Query: 355 TIRDIHRFIDASR---PGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIANSVVI 404
+ + +++ R PG ++ GFP + + D+++ +++ G+ S V+
Sbjct: 235 QLAAVRLYVELHRGEEPGQDQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVL 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,430,323
Number of Sequences: 539616
Number of extensions: 6924068
Number of successful extensions: 35629
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 493
Number of HSP's that attempted gapping in prelim test: 30880
Number of HSP's gapped (non-prelim): 3312
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)