Query 015405
Match_columns 407
No_of_seqs 311 out of 818
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ss6_A P47, NSFL1 cofactor P47 100.0 1.5E-35 5.2E-40 248.6 8.2 89 222-310 10-98 (102)
2 1s3s_G P47 protein; AAA ATPase 100.0 2E-30 6.9E-35 225.8 7.9 118 289-407 2-126 (127)
3 1vaz_A NSFL1 cofactor P47; bet 99.9 8.5E-29 2.9E-33 201.6 5.8 69 222-290 20-88 (88)
4 2dzk_A UBX domain-containing p 99.8 5.4E-19 1.8E-23 149.8 10.9 78 329-407 9-89 (109)
5 1wj4_A KIAA0794 protein; UBX d 99.8 1.4E-18 4.8E-23 150.5 9.4 82 324-407 34-119 (124)
6 3qx1_A FAS-associated factor 1 99.8 2.3E-18 8E-23 138.9 9.7 74 330-405 4-80 (84)
7 2cr5_A Reproduction 8; UBX dom 99.7 1.6E-17 5.5E-22 140.6 9.4 72 331-404 21-94 (109)
8 1v92_A NSFL1 cofactor P47; 3-h 99.4 9.6E-14 3.3E-18 99.6 5.8 44 6-49 2-45 (46)
9 3e21_A HFAF1, FAS-associated f 99.4 4.3E-14 1.5E-18 101.4 2.9 42 6-47 2-44 (45)
10 2dzl_A Protein FAM100B; UBA-li 99.3 1.5E-12 5.1E-17 100.9 6.1 45 6-50 12-58 (66)
11 2dal_A Protein KIAA0794; FAS a 99.3 1.5E-12 5E-17 99.7 5.9 44 7-50 13-56 (62)
12 2dam_A ETEA protein; KIAA0887, 99.3 2.3E-12 8E-17 100.1 5.9 45 6-50 15-60 (67)
13 3bq3_A Defective in cullin ned 98.7 9.5E-09 3.2E-13 99.6 5.4 43 7-49 13-55 (270)
14 2kzr_A Ubiquitin thioesterase 98.7 2.5E-08 8.7E-13 79.9 6.0 70 335-405 2-74 (86)
15 4gew_A 5'-tyrosyl-DNA phosphod 98.1 2E-06 6.8E-11 85.7 4.5 44 7-50 43-86 (362)
16 1oai_A Nuclear RNA export fact 97.8 4.3E-05 1.5E-09 57.6 5.8 43 6-48 4-46 (59)
17 2jp7_A MRNA export factor MEX6 97.6 6.7E-05 2.3E-09 56.2 5.3 42 7-48 4-45 (57)
18 1z96_A DNA-damage, UBA-domain 97.5 0.00015 5.2E-09 49.6 5.0 37 9-46 4-40 (40)
19 1wj7_A Hypothetical protein (R 97.5 0.00018 6.1E-09 60.1 6.0 43 7-49 37-79 (104)
20 1wju_A NEDD8 ultimate buster-1 97.2 0.0012 4.1E-08 54.8 8.2 69 331-403 13-86 (100)
21 2l2d_A OTU domain-containing p 97.2 0.00062 2.1E-08 51.8 5.7 40 7-46 15-54 (73)
22 2dzi_A Ubiquitin-like protein 97.1 0.002 6.9E-08 49.6 8.5 68 332-403 6-74 (81)
23 3a9j_A Ubiquitin; protein comp 97.1 0.0013 4.4E-08 49.7 7.1 65 335-403 2-67 (76)
24 1ndd_A NEDD8, protein (ubiquit 97.1 0.0016 5.4E-08 49.2 7.3 65 335-403 2-67 (76)
25 3mtn_B UBA80, ubcep1, ubiquiti 97.0 0.002 6.7E-08 50.0 7.7 67 333-403 3-70 (85)
26 2pjh_A Protein NPL4, nuclear p 97.0 0.00062 2.1E-08 54.0 4.4 68 335-404 6-76 (80)
27 1wia_A Hypothetical ubiquitin- 96.9 0.0022 7.7E-08 51.4 7.4 67 331-403 5-72 (95)
28 1yx5_B Ubiquitin; proteasome, 96.9 0.0033 1.1E-07 50.8 7.8 65 335-403 2-67 (98)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 96.8 0.0067 2.3E-07 47.5 8.7 68 332-403 6-74 (87)
30 2bwf_A Ubiquitin-like protein 96.7 0.0041 1.4E-07 47.3 6.7 66 334-404 5-71 (77)
31 3phx_B Ubiquitin-like protein 96.7 0.0054 1.9E-07 47.2 7.5 68 332-403 3-71 (79)
32 3dbh_I NEDD8; cell cycle, acti 96.7 0.0064 2.2E-07 47.5 8.0 68 332-403 11-79 (88)
33 3v6c_B Ubiquitin; structural g 96.7 0.0062 2.1E-07 48.4 7.9 70 330-403 14-84 (91)
34 2hj8_A Interferon-induced 17 k 96.6 0.0063 2.1E-07 48.2 7.8 67 333-403 4-71 (88)
35 3k9o_B Ubiquitin, UBB+1; E2-25 96.6 0.005 1.7E-07 49.2 7.2 65 335-403 3-68 (96)
36 3n3k_B Ubiquitin; hydrolase, p 96.6 0.0034 1.2E-07 48.7 5.8 66 334-403 4-70 (85)
37 1wy8_A NP95-like ring finger p 96.6 0.012 4.2E-07 46.1 9.2 68 332-403 6-76 (89)
38 1uel_A HHR23B, UV excision rep 96.6 0.01 3.4E-07 47.8 8.8 65 335-403 2-70 (95)
39 2wyq_A HHR23A, UV excision rep 96.6 0.009 3.1E-07 46.4 8.1 67 333-403 5-75 (85)
40 2kan_A Uncharacterized protein 96.5 0.012 4E-07 47.6 8.9 70 330-403 12-82 (94)
41 4dwf_A HLA-B-associated transc 96.5 0.0076 2.6E-07 47.6 7.6 68 332-403 4-71 (90)
42 2uyz_B Small ubiquitin-related 96.5 0.0063 2.1E-07 46.8 6.9 67 333-403 3-70 (79)
43 4hcn_B Polyubiquitin, ubiquiti 96.5 0.0063 2.1E-07 49.3 7.1 67 333-403 22-89 (98)
44 1wx8_A Riken cDNA 4931431F19; 96.4 0.012 4.2E-07 47.0 8.2 67 332-403 16-83 (96)
45 1sif_A Ubiquitin; hydrophobic 96.4 0.0077 2.6E-07 47.8 6.9 65 335-403 11-76 (88)
46 4fbj_B NEDD8; effector-HOST ta 96.4 0.0078 2.7E-07 47.7 6.8 65 335-403 2-67 (88)
47 1wx7_A Ubiquilin 3; ubiquitin- 96.3 0.02 6.9E-07 46.9 9.3 67 332-403 16-83 (106)
48 3plu_A Ubiquitin-like modifier 96.3 0.0087 3E-07 49.0 6.8 70 328-401 16-85 (93)
49 2ojr_A Ubiquitin; lanthide-bin 96.3 0.013 4.4E-07 48.6 7.9 68 332-403 34-102 (111)
50 1ttn_A DC-UBP, dendritic cell- 96.3 0.013 4.4E-07 48.2 7.8 68 332-403 22-90 (106)
51 1j8c_A Ubiquitin-like protein 96.2 0.031 1.1E-06 47.6 10.2 67 332-403 31-98 (125)
52 1wyw_B Ubiquitin-like protein 96.2 0.011 3.7E-07 47.9 6.9 68 332-403 20-88 (97)
53 2faz_A Ubiquitin-like containi 96.2 0.011 3.9E-07 45.1 6.7 66 334-403 3-71 (78)
54 3m62_B UV excision repair prot 96.1 0.01 3.4E-07 49.0 6.5 65 335-403 3-68 (106)
55 2kk8_A Uncharacterized protein 96.1 0.01 3.6E-07 46.9 6.3 67 333-403 10-78 (84)
56 4eew_A Large proline-rich prot 96.1 0.019 6.4E-07 45.1 7.7 68 332-403 16-83 (88)
57 1v5o_A 1700011N24RIK protein; 96.1 0.016 5.4E-07 47.3 7.4 68 334-404 8-80 (102)
58 3vdz_A Ubiquitin-40S ribosomal 96.0 0.014 4.6E-07 48.6 6.9 67 333-403 35-102 (111)
59 1wxv_A BAG-family molecular ch 96.0 0.038 1.3E-06 43.8 9.1 67 333-403 7-79 (92)
60 1we6_A Splicing factor, putati 96.0 0.027 9.2E-07 46.6 8.4 68 332-403 26-98 (111)
61 1v2y_A 3300001G02RIK protein; 96.0 0.013 4.4E-07 48.8 6.4 64 334-400 8-86 (105)
62 1we7_A SF3A1 protein; structur 95.9 0.024 8.3E-07 47.2 7.9 65 332-400 24-98 (115)
63 1yqb_A Ubiquilin 3; structural 95.9 0.022 7.5E-07 46.5 7.4 68 331-403 20-88 (100)
64 2klc_A Ubiquilin-1; ubiquitin- 95.9 0.022 7.7E-07 46.4 7.3 67 332-403 24-91 (101)
65 2kc2_A Talin-1, F1; FERM, adhe 95.8 0.018 6.1E-07 49.7 6.9 72 334-406 12-120 (128)
66 1wgd_A Homocysteine-responsive 95.8 0.048 1.6E-06 43.4 9.0 65 332-400 6-76 (93)
67 1uh6_A Ubiquitin-like 5; beta- 95.7 0.022 7.5E-07 47.1 6.7 70 330-403 25-95 (100)
68 1wji_A Tudor domain containing 95.7 0.021 7.2E-07 43.3 6.1 41 9-50 9-49 (63)
69 1jkg_B TAP; NTF2-like domain, 95.6 0.002 6.8E-08 61.5 0.0 42 8-49 197-238 (250)
70 1veg_A NEDD8 ultimate buster-1 95.5 0.019 6.6E-07 46.0 5.5 42 9-51 29-70 (83)
71 2kdi_A Ubiquitin, vacuolar pro 95.5 0.031 1.1E-06 46.7 7.0 68 332-403 8-76 (114)
72 1ify_A HHR23A, UV excision rep 95.5 0.024 8.3E-07 40.7 5.4 41 7-48 6-46 (49)
73 1vg5_A RSGI RUH-014, rhomboid 95.4 0.019 6.5E-07 44.9 5.1 42 7-49 27-68 (73)
74 1wgh_A Ubiquitin-like 3, HCG-1 95.4 0.098 3.4E-06 44.2 9.9 65 331-399 14-86 (116)
75 2l7r_A Ubiquitin-like protein 95.4 0.023 7.8E-07 45.6 5.6 64 334-403 20-84 (93)
76 2dkl_A Trinucleotide repeat co 95.4 0.036 1.2E-06 44.5 6.6 43 8-51 20-62 (85)
77 2kdb_A Homocysteine-responsive 95.3 0.054 1.8E-06 44.4 7.8 69 331-403 21-95 (99)
78 1v86_A DNA segment, CHR 7, way 95.3 0.045 1.5E-06 44.1 7.1 68 331-404 15-83 (95)
79 4a20_A Ubiquitin-like protein 95.3 0.053 1.8E-06 44.4 7.6 70 331-404 17-91 (98)
80 2kd0_A LRR repeats and ubiquit 95.3 0.047 1.6E-06 43.0 7.0 69 331-404 10-79 (85)
81 3b08_A Polyubiquitin-C, ubiqui 95.3 0.04 1.4E-06 47.0 7.1 62 335-400 2-63 (152)
82 1x1m_A Ubiquitin-like protein 95.2 0.068 2.3E-06 43.9 8.0 67 333-403 12-94 (107)
83 3b1l_X E3 ubiquitin-protein li 94.2 0.0034 1.2E-07 47.8 0.0 62 335-400 2-63 (76)
84 1se9_A Ubiquitin family; ubiqu 95.2 0.11 3.6E-06 44.7 9.4 65 332-400 15-87 (126)
85 2g3q_A Protein YBL047C; endocy 95.2 0.032 1.1E-06 38.7 5.0 38 9-47 4-41 (43)
86 2knz_A Ubiquilin-4; cytoplasm, 95.1 0.039 1.3E-06 40.3 5.6 42 6-48 8-50 (53)
87 1wgg_A Ubiquitin carboxyl-term 95.1 0.053 1.8E-06 43.8 7.0 67 332-404 6-74 (96)
88 3u30_A Ubiquitin, linear DI-ub 95.1 0.046 1.6E-06 48.3 7.2 67 330-400 17-83 (172)
89 2lxa_A Ubiquitin-like protein 95.1 0.043 1.5E-06 43.9 6.3 66 335-405 3-74 (87)
90 2gow_A HCG-1 protein, ubiquiti 94.9 0.085 2.9E-06 45.1 8.1 63 333-399 17-87 (125)
91 3b08_A Polyubiquitin-C, ubiqui 94.8 0.064 2.2E-06 45.7 7.1 67 333-403 76-143 (152)
92 2dak_A Ubiquitin carboxyl-term 94.8 0.033 1.1E-06 42.0 4.6 43 8-51 8-50 (63)
93 1wjn_A Tubulin-folding protein 94.7 0.13 4.4E-06 41.3 8.3 73 332-405 8-89 (97)
94 3l0w_B Monoubiquitinated proli 94.7 0.093 3.2E-06 46.8 8.1 65 335-403 2-67 (169)
95 3rt3_B Ubiquitin-like protein 94.6 0.094 3.2E-06 45.5 7.8 63 335-400 4-67 (159)
96 2jy5_A Ubiquilin-1; UBA, alter 94.6 0.06 2E-06 39.1 5.4 41 7-48 10-51 (52)
97 3q3f_A Ribonuclease/ubiquitin 94.5 0.065 2.2E-06 49.0 6.8 67 333-403 105-172 (189)
98 3m63_B Ubiquitin domain-contai 94.5 0.032 1.1E-06 45.6 4.3 66 333-403 28-94 (101)
99 2dah_A Ubiquilin-3; UBA domain 94.5 0.068 2.3E-06 39.2 5.4 42 8-50 8-50 (54)
100 1v5t_A 8430435I17RIK protein; 94.4 0.14 4.9E-06 40.5 7.8 69 333-404 7-78 (90)
101 2dzj_A Synaptic glycoprotein S 94.4 0.12 4.3E-06 41.1 7.4 71 334-406 11-86 (88)
102 1wiv_A UBP14, ubiquitin-specif 94.3 0.081 2.8E-06 41.2 5.9 43 8-51 28-70 (73)
103 3rt3_B Ubiquitin-like protein 94.3 0.12 3.9E-06 44.9 7.5 67 333-403 81-148 (159)
104 1dv0_A DNA repair protein HHR2 94.2 0.015 5.2E-07 41.5 1.4 41 9-50 4-44 (47)
105 1wf9_A NPL4 family protein; be 94.2 0.12 4E-06 42.6 7.0 70 334-404 8-90 (107)
106 2cp9_A EF-TS, EF-TSMT, elongat 94.0 0.051 1.7E-06 41.5 4.0 40 9-48 9-48 (64)
107 2daf_A FLJ35834 protein; hypot 93.8 0.26 8.9E-06 41.9 8.5 69 329-401 11-80 (118)
108 2kjr_A CG11242; UBL, ubiquitin 93.8 0.27 9.3E-06 39.8 8.3 73 330-403 12-90 (95)
109 1vej_A Riken cDNA 4931431F19; 93.7 0.12 4.2E-06 40.4 5.8 42 8-50 28-70 (74)
110 2dai_A Ubadc1, ubiquitin assoc 93.7 0.15 5.1E-06 40.7 6.4 44 8-52 28-71 (83)
111 1oqy_A HHR23A, UV excision rep 93.4 0.14 4.7E-06 51.4 7.2 67 333-403 7-77 (368)
112 3u30_A Ubiquitin, linear DI-ub 93.1 0.2 6.7E-06 44.2 6.9 68 332-403 95-163 (172)
113 3u5e_m 60S ribosomal protein L 92.6 0.022 7.6E-07 48.4 0.0 65 335-403 2-67 (128)
114 3ai5_A Yeast enhanced green fl 92.5 0.26 9E-06 48.3 7.5 69 331-403 231-300 (307)
115 2cpw_A CBL-interacting protein 92.4 0.18 6E-06 38.2 4.9 41 10-51 20-61 (64)
116 1vek_A UBP14, ubiquitin-specif 92.3 0.26 8.9E-06 39.3 6.0 44 7-51 27-71 (84)
117 2dag_A Ubiquitin carboxyl-term 92.2 0.24 8.4E-06 38.5 5.6 43 8-51 8-51 (74)
118 1whc_A RSGI RUH-027, UBA/UBX 3 92.2 0.11 3.8E-06 39.3 3.6 42 9-51 9-51 (64)
119 3u5c_f 40S ribosomal protein S 91.6 0.033 1.1E-06 49.2 0.0 65 335-403 2-67 (152)
120 1wz0_A Ubiquitin-like protein 91.6 0.9 3.1E-05 37.4 8.7 65 332-400 23-87 (104)
121 2io0_B Small ubiquitin-related 91.6 0.77 2.6E-05 36.8 8.1 64 333-400 5-68 (91)
122 1wm3_A Ubiquitin-like protein 91.5 0.67 2.3E-05 35.2 7.4 66 334-403 2-68 (72)
123 1wr1_B Ubiquitin-like protein 91.4 0.35 1.2E-05 36.0 5.5 40 8-48 16-56 (58)
124 2bwb_A Ubiquitin-like protein 91.4 0.34 1.2E-05 34.3 5.1 39 8-47 6-45 (46)
125 2dzm_A FAS-associated factor 1 90.9 1 3.5E-05 36.8 8.4 67 334-404 10-77 (100)
126 2io1_B Small ubiquitin-related 90.6 0.57 1.9E-05 37.8 6.4 64 333-400 7-70 (94)
127 3a4r_A Nfatc2-interacting prot 90.0 1.6 5.4E-05 33.8 8.4 65 332-400 6-71 (79)
128 2d07_B Ubiquitin-like protein 90.0 0.87 3E-05 36.5 7.1 65 332-400 16-80 (93)
129 2k8h_A Small ubiquitin protein 89.7 1.4 4.7E-05 36.7 8.3 65 332-400 25-89 (110)
130 2ekk_A UBA domain from E3 ubiq 89.5 0.64 2.2E-05 32.6 5.2 39 8-48 8-46 (47)
131 2al3_A TUG long isoform; TUG U 89.3 0.77 2.6E-05 37.2 6.2 65 335-403 11-76 (90)
132 1wgl_A TOLL-interacting protei 88.4 0.69 2.4E-05 34.5 4.9 41 10-50 10-51 (59)
133 2daj_A KIAA0977 protein, COBL- 88.3 2.5 8.7E-05 33.9 8.3 68 332-400 9-76 (91)
134 2fnj_B Transcription elongatio 88.1 0.74 2.5E-05 39.0 5.6 60 336-399 3-63 (118)
135 1tr8_A Conserved protein (MTH1 87.8 0.71 2.4E-05 38.2 5.1 35 10-44 66-100 (102)
136 1v6e_A Cytoskeleton-associated 87.6 1.9 6.3E-05 34.3 7.4 70 333-403 7-82 (95)
137 2cwb_A Chimera of immunoglobul 86.9 0.75 2.6E-05 38.4 4.8 40 9-48 66-105 (108)
138 2eke_C Ubiquitin-like protein 86.7 2.7 9.1E-05 34.8 8.1 64 332-400 30-93 (106)
139 1otr_A Protein CUE2; protein-p 86.4 1.2 4.2E-05 32.0 5.0 40 9-48 4-44 (49)
140 2kj6_A Tubulin folding cofacto 86.2 2.8 9.5E-05 33.9 7.8 73 330-403 11-90 (97)
141 3kyd_D Small ubiquitin-related 84.7 2.7 9.4E-05 35.3 7.3 66 331-400 38-103 (115)
142 2crn_A Ubash3A protein; compac 84.0 1.6 5.4E-05 32.9 4.9 42 10-52 10-52 (64)
143 2lbc_A Ubiquitin carboxyl-term 83.9 1.6 5.6E-05 36.8 5.6 42 8-50 77-118 (126)
144 2dna_A Unnamed protein product 82.5 2.7 9.3E-05 32.1 5.8 43 9-51 19-61 (67)
145 1wgn_A UBAP1, ubiquitin associ 82.2 2.3 8E-05 32.0 5.1 41 9-50 19-59 (63)
146 2ooa_A E3 ubiquitin-protein li 81.9 3.2 0.00011 30.2 5.6 37 10-47 12-48 (52)
147 1t0y_A Tubulin folding cofacto 81.4 4.5 0.00015 33.7 7.4 71 333-404 6-82 (122)
148 2d9s_A CBL E3 ubiquitin protei 81.1 3.7 0.00013 30.0 5.7 37 11-48 11-47 (53)
149 1vdl_A Ubiquitin carboxyl-term 80.8 3.8 0.00013 32.0 6.0 40 9-48 24-64 (80)
150 3shq_A UBLCP1; phosphatase, hy 80.2 2.8 9.5E-05 41.0 6.5 70 332-404 4-75 (320)
151 2cp8_A NEXT to BRCA1 gene 1 pr 79.2 4 0.00014 29.9 5.4 41 9-49 9-49 (54)
152 2jxx_A Nfatc2-interacting prot 78.5 12 0.0004 30.4 8.7 68 330-401 22-90 (97)
153 2dhy_A CUE domain-containing p 75.7 4.6 0.00016 30.8 5.2 43 8-50 17-60 (67)
154 4ajy_B Transcription elongatio 74.4 4.1 0.00014 34.5 5.0 59 338-400 5-64 (118)
155 2xzm_9 RPS31E; ribosome, trans 74.2 0.64 2.2E-05 42.5 0.0 56 335-394 2-57 (189)
156 2lva_A Ubiquitin carboxyl-term 76.3 0.65 2.2E-05 39.7 0.0 42 8-49 17-59 (129)
157 4b6w_A Tubulin-specific chaper 74.1 5 0.00017 31.5 5.3 68 334-403 3-78 (86)
158 4dbg_A Ranbp-type and C3HC4-ty 72.8 7 0.00024 32.2 6.0 64 332-399 21-88 (105)
159 3tix_A Ubiquitin-like protein 72.4 8.1 0.00028 35.6 6.8 65 331-400 55-119 (207)
160 3jyu_A Ubiquitin carboxyl-term 72.3 15 0.00051 34.0 8.9 58 346-404 154-216 (231)
161 3pge_A SUMO-modified prolifera 71.9 9.3 0.00032 35.0 7.2 65 331-400 27-91 (200)
162 2qho_B E3 ubiquitin-protein li 68.2 13 0.00045 26.7 5.7 46 4-49 4-50 (53)
163 1aip_C EF-TS, elongation facto 67.8 6.9 0.00024 35.9 5.3 40 10-49 4-43 (196)
164 4a3p_A Ubiquitin carboxyl-term 65.1 13 0.00046 33.9 6.8 59 345-404 141-204 (217)
165 1xb2_B EF-TS, elongation facto 64.8 7.1 0.00024 37.8 5.1 38 10-47 5-42 (291)
166 4ae4_A Ubiquitin-associated pr 61.2 13 0.00044 31.2 5.5 37 11-48 78-114 (118)
167 2di0_A Activating signal coint 57.1 31 0.0011 26.6 6.4 44 5-48 9-53 (71)
168 3ivf_A Talin-1; FERM domain, c 54.7 25 0.00086 34.3 7.2 68 330-398 82-156 (371)
169 3ivf_A Talin-1; FERM domain, c 52.6 22 0.00074 34.7 6.3 69 333-403 3-79 (371)
170 3qij_A Protein 4.1; cytoskelet 43.3 26 0.00088 33.3 5.0 63 333-396 17-82 (296)
171 2bps_A YUKD protein; ubiquitin 43.1 63 0.0021 25.2 6.4 69 335-405 6-79 (81)
172 1aua_A Phosphatidylinositol tr 39.4 34 0.0012 32.0 5.2 41 6-46 27-74 (296)
173 1oqy_A HHR23A, UV excision rep 38.0 15 0.00053 36.5 2.6 42 8-50 167-208 (368)
174 2juj_A E3 ubiquitin-protein li 38.0 56 0.0019 24.0 4.8 38 10-48 8-45 (56)
175 1wgr_A Growth factor receptor- 37.9 50 0.0017 26.9 5.2 60 334-394 10-74 (100)
176 3q8g_A CRAL-TRIO domain-contai 35.1 52 0.0018 31.6 5.8 41 6-46 36-83 (320)
177 4dxa_B KREV interaction trappe 33.4 32 0.0011 32.9 3.9 52 330-383 2-55 (322)
178 3pvl_A Myosin VIIA isoform 1; 31.7 72 0.0025 34.0 6.7 45 333-377 263-308 (655)
179 4atu_I Neuronal migration prot 31.0 26 0.00088 35.0 2.9 44 222-270 62-118 (373)
180 2oo9_A E3 ubiquitin-protein li 30.8 1.2E+02 0.004 21.4 5.4 37 10-47 5-41 (46)
181 1p3q_Q VPS9P, vacuolar protein 30.4 29 0.001 25.3 2.3 39 8-46 11-50 (54)
182 1nri_A Hypothetical protein HI 27.9 28 0.00097 33.2 2.5 38 10-47 245-282 (306)
183 1r5l_A Alpha-TTP, protein (alp 27.5 40 0.0014 30.6 3.4 39 8-46 7-55 (262)
184 3au4_A Myosin-X; protein-prote 26.9 72 0.0025 32.8 5.6 45 333-377 216-262 (555)
185 1h4r_A Merlin; FERM, neurofibr 25.8 67 0.0023 30.3 4.8 64 332-398 21-87 (314)
186 2lbc_A Ubiquitin carboxyl-term 25.4 68 0.0023 26.6 4.2 41 10-51 4-45 (126)
187 4ae4_A Ubiquitin-associated pr 25.2 1.2E+02 0.0041 25.2 5.6 41 8-49 7-47 (118)
188 1ef1_A Moesin; membrane, FERM 24.1 73 0.0025 29.6 4.6 63 334-398 2-67 (294)
189 2j9u_A VPS28, vacuolar protein 22.4 43 0.0015 27.2 2.2 23 22-48 72-94 (96)
190 1ufz_A Hypothetical protein BA 22.2 1.5E+02 0.005 23.4 5.2 37 13-49 38-76 (83)
191 2j9w_A VPS28, VPS28-PROV prote 22.0 44 0.0015 27.4 2.2 23 22-48 77-99 (102)
192 1olm_A SEC14-like protein 2; l 20.7 1.3E+02 0.0043 29.4 5.7 42 6-47 9-58 (403)
No 1
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=100.00 E-value=1.5e-35 Score=248.58 Aligned_cols=89 Identities=37% Similarity=0.732 Sum_probs=86.1
Q ss_pred CCceEEEEEecCceeecCCCCCCCCChhhHHHHHHHHcCCCCCcccCCCCCCcEEEEEEccccccccCCCCCCCcccccc
Q 015405 222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVG 301 (407)
Q Consensus 222 ~~~~~~it~w~nGF~VdDGplr~yddP~N~~fL~~I~~G~~P~eL~~~~~~~~V~v~v~D~~~E~y~~p~~~~~~F~G~G 301 (407)
+++.|+||||+|||+|||||||+|+||+|++||++|++|+||.||+++++++.|+|+|+||++|+|++|++++++|+|+|
T Consensus 10 ~~~~~~ltlw~nGFtVdDGplR~ydDP~N~~FL~~I~~G~~P~EL~~~~~~~~V~v~v~d~~~e~y~~p~~~~~~F~G~G 89 (102)
T 1ss6_A 10 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEG 89 (102)
T ss_dssp SCEEEEEEEESSEEEETTSCEEETTCTTTHHHHHHHHHTCCCHHHHTTSCSSCEEEEEEEEETTCCCSSSSSSTTSCSSS
T ss_pred CCceEEEEEecCceEecCCCcccCCCHhHHHHHHHHHhCCCCHHHhcccCCCeEEEEeeeccCccccCCCCcccCCcccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cccCCCCCC
Q 015405 302 RTLGGSDSP 310 (407)
Q Consensus 302 ~~LGs~~p~ 310 (407)
|+||+++|.
T Consensus 90 ~~LGs~~p~ 98 (102)
T 1ss6_A 90 QKLGSTAPQ 98 (102)
T ss_dssp SSGGGCCSS
T ss_pred eECCCCCCC
Confidence 999999874
No 2
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.96 E-value=2e-30 Score=225.82 Aligned_cols=118 Identities=39% Similarity=0.664 Sum_probs=93.3
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCC------CCCCCCcccCCCCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHH
Q 015405 289 EPPKRRSAFQGVGRTLGGSDSPASAALNTA------PSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRF 362 (407)
Q Consensus 289 ~p~~~~~~F~G~G~~LGs~~p~~~~~~~~~------~~~~~~~~vd~~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~f 362 (407)
+||+++++|+|+||||||++|.....+... +.+...+.+|+++++|+|||||+||+|++.|||.+|||+|||+|
T Consensus 2 ~p~~~~~~F~G~G~~Lgs~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~f 81 (127)
T 1s3s_G 2 KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLF 81 (127)
T ss_dssp --------CCSCCCCCCSSCCCCCCCSCTTHHHHHHHHHHHHSCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHH
T ss_pred CCCCCCCCceecCeECCCCCCCCCCCCCCccccccccccCCCccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHH
Confidence 567778999999999999987432110000 00112477899999999999999999999999999999999999
Q ss_pred HHhhCCCC-CCCeEEEecCCCCccCCCccCchhhcCCCCeeEEeeC
Q 015405 363 IDASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 407 (407)
Q Consensus 363 V~~~~~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL~navvvqr~ 407 (407)
|.+++++. ..+|.|+ ++||+|.|+|.++||+||||+|++|||||
T Consensus 82 V~~~~~~~~~~~f~L~-t~fPrk~l~d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 82 IVDARPAMAATSFVLM-TTFPNKELADENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp HHHHCSGGGTSCEEEE-ETTTTEECCSTTCBHHHHTCSSCEEEEEE
T ss_pred HHHhCcCCCCCCeEEe-cCCCCCCCCCCCCcHHHCCCcCceEEEEe
Confidence 99987754 6899999 79999999998999999999999999998
No 3
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=99.95 E-value=8.5e-29 Score=201.59 Aligned_cols=69 Identities=39% Similarity=0.799 Sum_probs=66.9
Q ss_pred CCceEEEEEecCceeecCCCCCCCCChhhHHHHHHHHcCCCCCcccCCCCCCcEEEEEEccccccccCC
Q 015405 222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEP 290 (407)
Q Consensus 222 ~~~~~~it~w~nGF~VdDGplr~yddP~N~~fL~~I~~G~~P~eL~~~~~~~~V~v~v~D~~~E~y~~p 290 (407)
+++.++||||+|||+|||||||+|+||+|++||++|++|+||.||++++++++|+|+|+||++|+|++|
T Consensus 20 ~~v~~~LtlW~nGFtVdDGpLR~ydDP~N~~FL~~I~~G~~P~EL~~~~~~~~V~v~l~d~r~E~Y~~P 88 (88)
T 1vaz_A 20 QDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKP 88 (88)
T ss_dssp SCCEEEEEEETTEEECTTSCEEETTSSTHHHHHHHHHHTCCSSHHHHTTSSSCCEEEEEECTTTSSCCC
T ss_pred CCceEEEEEecCceEecCCCCcCCCCHhHHHHHHHHHcCCCCHHHHcccCCCceEEEeEECCCCccCCc
Confidence 668999999999999999999999999999999999999999999999999999999999999999875
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.78 E-value=5.4e-19 Score=149.81 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=69.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCC--CccCchhhcCCCC-eeEEe
Q 015405 329 ATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIAN-SVVIQ 405 (407)
Q Consensus 329 ~~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~--D~s~TL~eagL~n-avvvq 405 (407)
...++|+||||||||+|++.||+.+|||++||+||..+......+|.|+ ++||+|.|+ |.++||+||||++ ++|++
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~-t~fPrk~l~~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA-TMFPRREFTREDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE-CSSSCCBCCTTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE-cCCCCcCCcccccCCCHHHCCCCCceEEEE
Confidence 3567899999999999999999999999999999998743336899999 799999998 7889999999998 67777
Q ss_pred eC
Q 015405 406 KL 407 (407)
Q Consensus 406 r~ 407 (407)
+|
T Consensus 88 ~~ 89 (109)
T 2dzk_A 88 LP 89 (109)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 5
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.76 E-value=1.4e-18 Score=150.51 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=72.5
Q ss_pred CcccCCCCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccC--CCccCchhhcCCCC-
Q 015405 324 GLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQL--TDLDQTVEQAGIAN- 400 (407)
Q Consensus 324 ~~~vd~~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l--~D~s~TL~eagL~n- 400 (407)
.+.+|+..++|+||||||||+|+++||+.+|||++||+||... .....+|.|+ ++||+|.| +|.++||+||||++
T Consensus 34 ~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~-t~fPrk~l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 34 VEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELL-TNFPRRKLSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp CCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEE-CSSSCCEETSSCSSSCTTTTTCCSS
T ss_pred ccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEe-cCCCCcCCccCCCCCCHHHCCCCCc
Confidence 4678999999999999999999999999999999999999886 2236899999 79999999 57899999999998
Q ss_pred -eeEEeeC
Q 015405 401 -SVVIQKL 407 (407)
Q Consensus 401 -avvvqr~ 407 (407)
++|||++
T Consensus 112 a~Liv~~~ 119 (124)
T 1wj4_A 112 ETVFVQES 119 (124)
T ss_dssp BCCEEEEC
T ss_pred eEEEEEEc
Confidence 5666653
No 6
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.76 E-value=2.3e-18 Score=138.92 Aligned_cols=74 Identities=16% Similarity=0.331 Sum_probs=66.2
Q ss_pred CCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCC--CccCchhhcCCCC-eeEEe
Q 015405 330 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIAN-SVVIQ 405 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~--D~s~TL~eagL~n-avvvq 405 (407)
++|+|+|||||+||+|++.||+.++||++||+||.... ....+|.|+ ++||+|.|+ |.++||+||||++ ++|++
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~-~~~~~f~L~-t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEYKLL-STFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT-CCTTTEEEE-CSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC-CCCCCeEEE-eCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 68999999999999999999999999999999999853 336899999 799999997 8889999999997 55543
No 7
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.71 E-value=1.6e-17 Score=140.60 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCC-CccCchhhcCCCC-eeEE
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT-DLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~-D~s~TL~eagL~n-avvv 404 (407)
.++|+||||||||+|+++||+.+|||++||+||.+.. .....|.|+ ++||+|.|. |.++||+||||.| ++|+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~~~~f~L~-t~fPrk~l~~d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLS-TSFPRRALEVEGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEE-CSSSCCBCCCCSSCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CCCCCeEEE-eCCCCcCCCCCCCCCHHHcCCCCCeEEE
Confidence 6799999999999999999999999999999999762 336899999 799999998 7899999999998 4444
No 8
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.44 E-value=9.6e-14 Score=99.58 Aligned_cols=44 Identities=36% Similarity=0.718 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 6 ~~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
|++++++|.|||+|||+++.+|++||+.++|||+.||+.||+.+
T Consensus 2 M~~~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 2 AEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp TTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 56788999999999999999999999999999999999999864
No 9
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.43 E-value=4.3e-14 Score=101.43 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHHHh
Q 015405 6 AEANSSLINSFVEITSSTK-DEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 6 ~~~~~e~I~qF~~iTgas~-~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
+++++++|.+||+|||++. ++|++||+++||||+.||+.||.
T Consensus 2 ~~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 2 SMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp -CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 3579999999999999996 99999999999999999999984
No 10
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=100.86 Aligned_cols=45 Identities=27% Similarity=0.545 Sum_probs=40.8
Q ss_pred hhh-hH-HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 6 AEA-NS-SLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 6 ~~~-~~-e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
|++ ++ ++|.|||+|||+++.+|++||+.++|||+.||+.||+...
T Consensus 12 m~~~~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 12 MDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp CHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred hhcCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 455 66 8999999999999999999999999999999999997643
No 11
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=99.67 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..++++|.|||+|||+++.+|++||++++|||+.||+.||+.++
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 45688999999999999999999999999999999999998653
No 12
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=100.06 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHhC-CCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 6 AEANSSLINSFVEITS-STKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 6 ~~~~~e~I~qF~~iTg-as~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..+++++|.|||+||| +++.+|++||+.++|||+.||+.||+.++
T Consensus 15 s~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred ChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3568899999999999 99999999999999999999999998754
No 13
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.71 E-value=9.5e-09 Score=99.62 Aligned_cols=43 Identities=21% Similarity=0.493 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
.+++++|+|||+|||+++.+|++||++++|||+.||++||+++
T Consensus 13 ~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~ 55 (270)
T 3bq3_A 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKE 55 (270)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578899999999999999999999999999999999999764
No 14
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.67 E-value=2.5e-08 Score=79.94 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=57.0
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCC--CccCchhhcCCCC-eeEEe
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIAN-SVVIQ 405 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~--D~s~TL~eagL~n-avvvq 405 (407)
+|+||+.+|+.++..|+.++||.+|+.+|.....-....+.|+ .+||+|.|+ |.++||+++||.+ ++|+.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~-~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRIL-VGYPPECLDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCE-ESSCCCCCCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEE-eCCCCcccccCCCCCCHHHcCCCCCCEEEE
Confidence 5899999997664339999999999999998743335678999 799999985 4689999999996 55553
No 15
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.07 E-value=2e-06 Score=85.73 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
...++.+.+|.+|||+++++|++||..++|+||.||+.||+...
T Consensus 43 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~~~ 86 (362)
T 4gew_A 43 MSDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGSEA 86 (362)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCCcc
Confidence 34567899999999999999999999999999999999997654
No 16
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=97.75 E-value=4.3e-05 Score=57.61 Aligned_cols=43 Identities=9% Similarity=0.271 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 6 ~~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
+..+.++|.+|+..||...+-++.+|+.++||++.|+..|-+-
T Consensus 4 s~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 4 SPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999763
No 17
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=97.64 E-value=6.7e-05 Score=56.21 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
..+.++|.+|+..||...+-++.+|+.++||++.|+..|-+-
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999764
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.48 E-value=0.00015 Score=49.58 Aligned_cols=37 Identities=30% Similarity=0.237 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFL 46 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy 46 (407)
.++.|++++++ |.+++.|++.|..++||++.|++-+|
T Consensus 4 ~~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 46789999998 99999999999999999999998764
No 19
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.46 E-value=0.00018 Score=60.06 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
.+.++.|...+++||++++.|+..|..++|||+.||+.+|+..
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999999999764
No 20
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.20 E-value=0.0012 Score=54.77 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCceEEEEEcCC----CCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 331 LPTTSVQLRLAD----GTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 331 ~p~t~IqIRL~d----G~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.+.++|+||+++ |+.+.+.+..++||.+|..-|.....-......|+ |=-|.|.| +.||.+.||.+ ++|
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKiL~D-~~TL~~y~I~~gsti 86 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQLQL-GKTLEEQGVAHNVKA 86 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEECCT-TSBHHHHTCCSSEEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeECCC-CCcHHHcCCCCCCEE
Confidence 457899999999 77899999999999999999988642224456776 66999987 58999999995 544
No 21
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=97.18 E-value=0.00062 Score=51.78 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFL 46 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy 46 (407)
-+++..|+.|+.-||+.+-.||..||--||||..||+.|=
T Consensus 15 ~dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 15 LDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp CCHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 3678889999999999999999999999999999999993
No 22
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.002 Score=49.56 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+|+.+.+.++.+.||++|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL---FKGKALAD-GKRLSDYSIGPNSKL 74 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE---ETTEECCT-TSBGGGGTCCSSBCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 4567889999999999999999999999999987643224566776 66889977 68999999985 443
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.11 E-value=0.0013 Score=49.73 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=52.5
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.++.+.||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987532223456666 67889987 68999999985 444
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.07 E-value=0.0016 Score=49.24 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=52.1
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.++.+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 67 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987532223455666 67889977 58999999985 443
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.03 E-value=0.002 Score=49.98 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.-.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |..|.|.| +.||.+.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKWSTL 70 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 357899999999999999999999999999987632223456676 77899987 58999999985 444
No 26
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=96.99 E-value=0.00062 Score=53.95 Aligned_cols=68 Identities=7% Similarity=0.161 Sum_probs=53.9
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCC-ccCC-CccCchhhcCCCC-eeEE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPP-KQLT-DLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~-k~l~-D~s~TL~eagL~n-avvv 404 (407)
.|+||-++|+..+- +..+.||++|++.|....+.....|.|. ..||+ ++|. +.+.||+++||.+ ..|.
T Consensus 6 ~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~~i~~~~~~l~-~~~~p~~~l~~~~~~~l~~lgl~hGd~l~ 76 (80)
T 2pjh_A 6 IIRVQSPDGVKRIT-ATKRETAATFLKKVAKEFGFQNNGFSVY-INRNKTGEITASSSKSLHLLKIKHGDLLF 76 (80)
T ss_dssp CCEEECSSEEEECC-CCSSCCHHHHHHHHHHHTCCCTTTCCCC-CSCCGGGGSSSCCCCTTTTTCCCTTCCEE
T ss_pred EEEEECCCCCEEEE-cCCcChHHHHHHHHHHHcCCCCCcceEE-ecCCCCCcccCCCCCCHHHcCCCCCCEEE
Confidence 58999999975443 8889999999999998755445678898 79998 6774 4678999999986 4443
No 27
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.93 E-value=0.0022 Score=51.45 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.....|.||..+|+.+.+++..+.||.+|...|.... .....|+ |-.|.|.|.+.||.+.|+.+ ++|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi---~~Gk~L~D~~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI---YQGRLLQDPARTLSSLNITNNCVI 72 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE---ETTEECCCSSCBTTTTTCCTTEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE---ECCEEccCCcCCHHHcCCCCCCEE
Confidence 3457889998999999999999999999999997653 4566777 67899998669999999985 444
No 28
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.86 E-value=0.0033 Score=50.76 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=52.8
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..+.||++|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 5889999999999999999999999999987642223456666 67899987 68999999985 444
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.76 E-value=0.0067 Score=47.45 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
+...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~Gk~L~d-~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE---FQGQVLQD-WLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE---ETTEECCS-SSBHHHHTCCTTEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE---ECCEEccC-CCCHHHCCCCCCCEE
Confidence 4568889999999999999999999999999988643224566776 66788977 58999999985 543
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.68 E-value=0.0041 Score=47.32 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
..|.||. +|+.+.+.+..+.||++|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i~ 71 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSVH 71 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCeEcCC-CCCHHHcCCCCCCEEE
Confidence 4677888 899999999999999999999987532223455666 77899987 48999999985 5443
No 31
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.68 E-value=0.0054 Score=47.17 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
+.-.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 3467899999999999999999999999999987532223456676 67789988 68999999985 443
No 32
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.68 E-value=0.0064 Score=47.49 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |=.+.|.| +.||.+.|+.+ ++|
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i 79 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 79 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 4568999999999999999999999999999987632223445676 56688887 68999999985 544
No 33
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.65 E-value=0.0062 Score=48.42 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=54.8
Q ss_pred CCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 330 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....-.|.||..+|+.+.+++..+.||.+|...|.....-......|+ |=.+.|.| +.||.+.|+.+ ++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 84 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE---ECCeECCC-cCcHHHCCCCCCCEE
Confidence 344668999999999999999999999999999987632223445666 56688887 58999999985 444
No 34
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.65 E-value=0.0063 Score=48.22 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE---SSSSCCCT-TSBHHHHHCSTTCEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 357888999999999999999999999999987642224556676 77889977 58999999985 444
No 35
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.62 E-value=0.005 Score=49.16 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i 68 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 68 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 6889999999999999999999999999987632223445666 77788987 57999999985 443
No 36
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.59 E-value=0.0034 Score=48.67 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
-.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIHNHSAL 70 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETBEECCT-TCBTTTTTCCTTCEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE---ECCeECCC-CCCHHHCCCCCCCEE
Confidence 47899999999999999999999999999987632223456676 66788887 57999999985 443
No 37
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.59 E-value=0.012 Score=46.14 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=53.6
Q ss_pred CceEEEEEcCCC-CEEEE-EcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADG-TRMVA-RFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG-~Rl~~-rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+| +.+.+ .+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLF---YRGKQLEN-GYTLFDYDVGLNDII 76 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE---ETTEECCS-SSBHHHHTCCTTCEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE---ECCeECCC-CCCHHHCCCCCCCEE
Confidence 456889999999 68888 59999999999999988643224556776 56788876 58999999985 443
No 38
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.59 E-value=0.01 Score=47.79 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=52.4
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhC--CCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASR--PGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~--~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..+.||.+|...|.... ... .....|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI---YAGKILND-DTALKEYKIDEKNFV 70 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE---ETTEECCT-TSBGGGGTCCSSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 578999999999999999999999999998752 122 4556776 66899977 58999999985 444
No 39
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.56 E-value=0.009 Score=46.39 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhC--CCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR--PGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~--~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
...|.||..+|+.+.+.+..+.||.+|...|.... ... .....|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~i 75 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFV 75 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE---ETTEECCT-TSBGGGGCCCTTSEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE---ECCEECcC-CCCHHHcCCCCCCEE
Confidence 45788999999999999999999999999998851 222 3455666 66888987 58999999985 444
No 40
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.54 E-value=0.012 Score=47.57 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=55.1
Q ss_pred CCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 330 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
......|.||..+| .+.+.+..+.||.+|...|.....-......|+ |-.|.|.|.+.||.+.|+.+ ++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D~~~tL~~ygI~~gstl 82 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY---YSGIELADDYRNLNEYGITEFSEI 82 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE---ETTEEECCTTSBHHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCEECCCCcccHHHCCCCCCCEE
Confidence 34567899999888 788999999999999999988632224556666 77899988558999999986 443
No 41
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.53 E-value=0.0076 Score=47.59 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCeeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~navv 403 (407)
+.-.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |=.|.|.| +.||.+.|+-+++|
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~d-~~tL~~~~i~g~~i 71 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVI 71 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCeECCC-CCCHHHcCCCCcEE
Confidence 3567899999999999999999999999999987532223445666 66788987 68999999944554
No 42
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.52 E-value=0.0063 Score=46.81 Aligned_cols=67 Identities=9% Similarity=0.217 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.-.|.||..+|+.+.+++..++||.+|.+.|.....-......|+ |-.+.|.| +.||++.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~---~~G~~L~d-~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEeCC-CCCHHHcCCCCCCEE
Confidence 357889999999999999999999999999987632223456676 78999987 48999999985 443
No 43
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0063 Score=49.28 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
...|.||..+|+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 89 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TCBSGGGTCCTTEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 468999999999999999999999999999987632223455676 67788977 58999999985 444
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.40 E-value=0.012 Score=47.03 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||.. |+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI---FTGKILRD-QDILSQRGILDGSTV 83 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE---ETTEECCT-TSCHHHHTCCTTEEE
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-cCCHHHCCCCCCCEE
Confidence 4567888888 99999999999999999999988642224455666 66788876 58999999986 444
No 45
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.39 E-value=0.0077 Score=47.75 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=52.7
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 11 ~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 76 (88)
T 1sif_A 11 QLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 76 (88)
T ss_dssp EEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBSGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 6889999999999999999999999999987632223456676 67889987 68999999985 443
No 46
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.38 E-value=0.0078 Score=47.74 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=52.2
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |=.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~l 67 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 67 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987532223445676 66788987 68999999985 444
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.34 E-value=0.02 Score=46.89 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+|+ +.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKD-PDSLAQCGVRDGLTV 83 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE---ETTEECCT-TSCHHHHTCCTTEEE
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHcCCCCCCEE
Confidence 3567888988885 78899999999999999987532224556776 56788977 68999999986 443
No 48
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.31 E-value=0.0087 Score=48.99 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=54.7
Q ss_pred CCCCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCe
Q 015405 328 DATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 401 (407)
Q Consensus 328 d~~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~na 401 (407)
....+...|-|+...|+.+.+.++.++||++|.+-|.....-....-.|. |=.|.|.| ..||++.++.+.
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLi---f~Gk~LkD-~~TL~dY~I~dg 85 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQ---KGGSVLKD-HISLEDYEVHDQ 85 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBTGGGTCCTT
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEE---eCCEEccC-cCCHHHcCCCCC
Confidence 44567889999999999999999999999999999976532223455676 77789988 589999999963
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.29 E-value=0.013 Score=48.62 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE---ETTEECCS-SCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 3578899999999999999999999999999987632224566776 56788977 68999999985 443
No 50
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.28 E-value=0.013 Score=48.22 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF---FSGRPLTD-KMKFEELKIPKDYVV 90 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE---ETTEECCT-TSHHHHCCCSSSCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 3467899999999999999999999999999987632224556777 66788976 68999999985 544
No 51
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.23 E-value=0.031 Score=47.59 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.+..|.||.. |+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI 98 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI---FAGKILKD-QDTLIQHGIHDGLTV 98 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE---ETTEEEST-TSCGGGTTCSSSEEE
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 4577888888 99999999999999999999987632224556676 66888976 58999999986 444
No 52
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.20 E-value=0.011 Score=47.89 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||..+|+.+.+++..++||.+|...|.....-......|+ |-.+.|.| +.||.+.+|.+ ++|
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi---f~Gk~L~d-~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 88 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTCEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCeEcCC-CCCHHHCCCCCCCEE
Confidence 3567888989999999999999999999999987632224456776 88999987 58999999985 443
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.20 E-value=0.011 Score=45.12 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCEE-EEE-cCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 334 TSVQLRLADGTRM-VAR-FNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 334 t~IqIRL~dG~Rl-~~r-fn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
-.|.||..+|+.+ .+. +..+.||.+|..-|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~---~~g~~L~d-~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF---YRGKQMED-GHTLFDYEVRLNDTI 71 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTTTTTCCTTCEE
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 4688999999985 888 9999999999999987632223455666 66788976 58999999985 444
No 54
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.01 Score=48.97 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=52.4
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..++||.+|...|.....-....-.|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~~i~~g~~i 68 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI---YSGKVLQD-SKTVSECGLKDGDQV 68 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCEECCC-cCCHHHcCCCCCCEE
Confidence 5889999999999999999999999999987532223445676 66889988 68999999985 444
No 55
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.14 E-value=0.01 Score=46.88 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCcc-CCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQ-LTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~-l~D~s~TL~eagL~n-avv 403 (407)
.-+|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |-.|. |+| +.||.+.|+.+ ++|
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~lL~D-~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI---VDGIVILRE-DLTVEQCQIVPTSDI 78 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCCS-SSBHHHHTCCTTSCE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEEecCC-cCCHHHcCCCCCCEE
Confidence 357899999999999999999999999999987632223455666 77888 876 68999999985 444
No 56
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.12 E-value=0.019 Score=45.09 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCeeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~navv 403 (407)
....|.||..+|+.+.+.+..++||.+|...|.....-....-.|+ |=.|.|.| +.||.+.|+-+++|
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~g~~i 83 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVI 83 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCcHHHcCCCCcEE
Confidence 4568999999999999999999999999999987532223345666 67788988 68999999944554
No 57
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.09 E-value=0.016 Score=47.30 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=52.2
Q ss_pred eEEEEEcCCC----CEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015405 334 TSVQLRLADG----TRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 334 t~IqIRL~dG----~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
-.|.||..+| +.+.+.+..+.||.+|...|.....-......|+ |-.|.|.|...||.+.|+.+ ++|+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~gk~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YMEQLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETTEEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECCEECCCCcccHHHCCCCCCCEEE
Confidence 4677888755 6788999999999999999988643223455666 55689988778999999985 5544
No 58
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.04 E-value=0.014 Score=48.59 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.-.|.||..+|+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 467889999999999999999999999999987632223455666 77789987 57999999985 443
No 59
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.99 E-value=0.038 Score=43.82 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCEEEEEcCCC-----CCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHH-----HTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t-----~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
..+|.|+. .|+.+.+.+..+ .||.+|...|.....-....-.|+ |-.|.|.|.++||.+.|+.+ +.|
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~---~~Gk~L~D~~~~L~~~~i~~g~~i 79 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI---FKGKSLKEMETPLSALGIQDGCRV 79 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE---ETTEEECCSSSBHHHHTCCSSEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE---ECCeecCCCcccHHHCCCCCCCEE
Confidence 56788888 588889999985 999999999987642224556776 66899998788999999985 444
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.98 E-value=0.027 Score=46.56 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=54.4
Q ss_pred CceEEEEEcC---CCCEEEEEcCC-CCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLA---DGTRMVARFNH-HHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~---dG~Rl~~rfn~-t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
+...|.||.+ +|+.+.+.+.. ++||.+|...|.....-....-.|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~---~~Gk~L~D-~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS---GKAGFLKD-NMSLAHYNVGAGEIL 98 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE---CSSSBCCT-TSBTTTTTCSSSCEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4578999998 89999999997 9999999999988642224556777 56788877 68999999985 444
No 61
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.98 E-value=0.013 Score=48.83 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC---C------------CCeEEEecCCCCccCCCccCchhhcCC
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS---A------------RNYQLQAMGFPPKQLTDLDQTVEQAGI 398 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~---~------------~~F~L~tt~FP~k~l~D~s~TL~eagL 398 (407)
-+|.|+..+|+.+.+.+..+.||.+|..-|....... . ..|.|+ |..|.|.|++.||++.|+
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li---~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT---SAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE---SSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE---eCCcCccCCcCCHHHcCC
Confidence 6789999999999999999999999999998753110 0 357887 889999877899999999
Q ss_pred CC
Q 015405 399 AN 400 (407)
Q Consensus 399 ~n 400 (407)
.+
T Consensus 85 ~~ 86 (105)
T 1v2y_A 85 RN 86 (105)
T ss_dssp CS
T ss_pred CC
Confidence 96
No 62
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.92 E-value=0.024 Score=47.21 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=52.6
Q ss_pred CceEEEEEcCC----------CCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLAD----------GTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~d----------G~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
+..+|.|++++ |+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~---~~Gk~L~D-~~tL~~y~i~~ 98 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ---YEGIFIKD-SNSLAYYNMAS 98 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE---ETTEEECT-TSBHHHHTCCS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE---ECCEECCC-CCCHHHCCCCC
Confidence 46889999985 67888999999999999999988642224556676 56788876 58999999986
No 63
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.89 E-value=0.022 Score=46.45 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.....|.||..+|+ ..+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKD-PDSLAQCGVRDGLTV 88 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBHHHHTCCTTCEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 34678899998885 78899999999999999987632223445666 66888977 58999999985 443
No 64
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.86 E-value=0.022 Score=46.44 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
....|.||.. |+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gI~~g~~I 91 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI---FAGKILKD-QDTLSQHGIHDGLTV 91 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE---ETTEEECT-TCCTGGGTCCTTCEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHcCCCCCCEE
Confidence 3567888888 88899999999999999999987632223445666 66788976 58999999985 443
No 65
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.84 E-value=0.018 Score=49.74 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCc---------------------------c
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPK---------------------------Q 385 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~k---------------------------~ 385 (407)
-.|.|||+||+...++.+.+.||..+-..|...-.-. ...|.|+ ...|.. .
T Consensus 12 r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLV-RELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEE-EECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred ccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccc-ccccccccccCchhhccccccccchhHHHHHHHH
Confidence 4699999999999999999999999999997753222 3568888 455422 1
Q ss_pred C--------CCccCchhhcCCC-CeeEEee
Q 015405 386 L--------TDLDQTVEQAGIA-NSVVIQK 406 (407)
Q Consensus 386 l--------~D~s~TL~eagL~-navvvqr 406 (407)
| -|.+.||.|-|+. +.+|+.|
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 1 1558999999998 4667665
No 66
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.82 E-value=0.048 Score=43.40 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCC--EEEEEcCCCCCHHHHHHHHHhhCC-CC-CCCeEEEecCCCCccCCCccCchhhc--CCCC
Q 015405 332 PTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRP-GS-ARNYQLQAMGFPPKQLTDLDQTVEQA--GIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~--Rl~~rfn~t~TV~dvr~fV~~~~~-~~-~~~F~L~tt~FP~k~l~D~s~TL~ea--gL~n 400 (407)
....|.||..+|+ .+.+.+..++||.+|...|....+ .. .....|+ |-.|.|.| +.||.+. ++.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi---~~Gk~L~D-~~tL~~~~~~i~~ 76 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI---YSGKLLLD-HQCLRDLLPKQEK 76 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE---ETTEECCS-SSCHHHHSCSSSC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE---ECCEECcC-cCCHHHHhcCCCC
Confidence 3468999999998 566677799999999999998642 22 4566777 67899987 4899999 9986
No 67
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.72 E-value=0.022 Score=47.11 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=55.2
Q ss_pred CCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 330 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
..+...|-|+...|+.+.+.+..++||++|...|.....-....-.|. |..|.|.| ..||.+.|+.+ ++|
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi---~~Gk~L~D-~~TL~dygI~~gstl 95 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK---KWYTIFKD-HVSLGDYEIHDGMNL 95 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCS-SCBHHHHTCCTTEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 345678899999999999999999999999999987632112344555 77999987 68999999986 444
No 68
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.72 E-value=0.021 Score=43.30 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
.++.|++.++ .|-+++.|+.-|..++||++.|++-.|....
T Consensus 9 ~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 9 DEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp CHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4678899887 5999999999999999999999999997654
No 69
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=95.62 E-value=0.002 Score=61.46 Aligned_cols=42 Identities=10% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
.+.++|.+|+..||...+-++.+|+.++||++.|+..|-+-.
T Consensus 197 ~q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 238 (250)
T 1jkg_B 197 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLK 238 (250)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566899999999999999999999999999999999996543
No 70
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.54 E-value=0.019 Score=45.98 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (407)
.++.|++.+++ |.++.+|+.-|..++||++.|++-.|...++
T Consensus 29 ~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 46889999987 9999999999999999999999999987653
No 71
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.031 Score=46.66 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
+.-.|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---WAGKQLED-GRTLSDYNIQRESTL 76 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTTTTTCCSSCEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4557999999999999999999999999999987632223455666 66888976 68999999985 443
No 72
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.49 E-value=0.024 Score=40.71 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
...++.|++.+++ |-+++.|+.-|..++||++.|++-.|..
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4457789999887 9999999999999999999999988863
No 73
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.45 E-value=0.019 Score=44.89 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
...++.|++.+++ |.++++|+.-|..++||++.||+-.|...
T Consensus 27 ~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3457889999985 89999999999999999999999998754
No 74
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.43 E-value=0.098 Score=44.21 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCC--------CCCCeEEEecCCCCccCCCccCchhhcCCC
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPG--------SARNYQLQAMGFPPKQLTDLDQTVEQAGIA 399 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~--------~~~~F~L~tt~FP~k~l~D~s~TL~eagL~ 399 (407)
.....|.||+.+|+.+.+.+..++||.+|...|....+. ......|+ |=.|.|+| +.||.+.++.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI---y~GK~LeD-~~TL~~y~I~ 86 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 86 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE---ETTEEECS-SCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 345788899899999999999999999999999974321 13455676 88899987 5899999985
No 75
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.41 E-value=0.023 Score=45.56 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
..|.||. |+.+.+.+..+.||.+|...|.....-......|+ |-.|.|+| +.||.+.|+.+ ++|
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL---LAGAPLED-EATLGQCGVEALTTL 84 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE---ETTEECCT-TSBHHHHTCCSSCEE
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4555665 88899999999999999999987632223456676 56788976 68999999985 443
No 76
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.37 E-value=0.036 Score=44.52 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (407)
..++.|+|++++ |.++..|+.-|..++||++.|++-.|+...+
T Consensus 20 ~n~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 20 IMSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 347889999995 9999999999999999999999999987654
No 77
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.35 E-value=0.054 Score=44.39 Aligned_cols=69 Identities=7% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCC--EEEEEcCCCCCHHHHHHHHHhhCCCC--CCCeEEEecCCCCccCCCccCchhhc--CCCCeeE
Q 015405 331 LPTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRPGS--ARNYQLQAMGFPPKQLTDLDQTVEQA--GIANSVV 403 (407)
Q Consensus 331 ~p~t~IqIRL~dG~--Rl~~rfn~t~TV~dvr~fV~~~~~~~--~~~F~L~tt~FP~k~l~D~s~TL~ea--gL~navv 403 (407)
.....|.||.++|+ .+.+.+..+.||.+|...|....+.. .....|+ |-.|.|.| +.||.+. ++.+...
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI---y~Gk~L~D-~~tL~~y~~~I~~~~t 95 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV---YSGRLLPD-HLQLKDILRKQDEYHM 95 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE---ETTEEECT-TSBTHHHHTTTCSEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE---ECCEECCC-CCCHHHHhcCCCCCCE
Confidence 34578999999998 56788899999999999999753332 2566787 77899987 5899999 9986433
No 78
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.32 E-value=0.045 Score=44.12 Aligned_cols=68 Identities=7% Similarity=0.082 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
....+|.|++ .|+.+.+.+..+.||.+|..-|.....-....-.|+ |..|.|+| . ||.+.+|.+ +.|+
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~---~~Gk~Ldd-~-tL~~~~i~~g~~i~ 83 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM---YKGLVPED-K-TLREIKVTSGAKIM 83 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB---SSSBCCSS-S-BHHHHCCCTTEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCeeCCc-C-cHHHCCCCCCCEEE
Confidence 3456788885 688889999999999999999987632223344555 88899943 3 999999985 4443
No 79
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.31 E-value=0.053 Score=44.36 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCCEEEE--EcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCccCCCccCchhhcCC-C-CeeEE
Q 015405 331 LPTTSVQLRLADGTRMVA--RFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGI-A-NSVVI 404 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~--rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL-~-navvv 404 (407)
..+..|-||..+|+.+.+ .+..+.||.+|...|....... ...-.|+ |-.|.|.| +.||.+.++ . +++|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL---LKGKVLHD-NLFLSDLKVTPANSTIT 91 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE---ETTEEECT-TCBGGGSCCBTTBCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEE---ECCEECcC-cCCHHHcCcCCCCCEEE
Confidence 456789999999997655 6679999999999993333333 3456676 77899988 589999999 6 45543
No 80
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.28 E-value=0.047 Score=43.02 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
..+..+.+.+ +|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|+
T Consensus 10 ~~~~~~~~~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 10 HSTIKLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGKVLVE-TSTLKQSDVGSGAKLM 79 (85)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE---ETTEECCT-TCBTTTTTCCTTEEEE
T ss_pred CCcEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCeECCC-cCCHHHCCCCCCCEEE
Confidence 3444554444 888899999999999999999987532224556676 66888977 58999999985 5443
No 81
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.28 E-value=0.04 Score=46.96 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=50.1
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~---~~g~~L~d-~~tL~~~~i~~ 63 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQK 63 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCT
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE---ECCeECcC-cccHHHhccCC
Confidence 5789999999999999999999999999987632223445666 66888876 68999999985
No 82
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.19 E-value=0.068 Score=43.90 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=52.3
Q ss_pred ceEEEEEcCCC---CEEEEEcCC---------CCCHHHHHHHHHhhCC-CC-CCC-eEEEecCCCCccCCCccCchhhcC
Q 015405 333 TTSVQLRLADG---TRMVARFNH---------HHTIRDIHRFIDASRP-GS-ARN-YQLQAMGFPPKQLTDLDQTVEQAG 397 (407)
Q Consensus 333 ~t~IqIRL~dG---~Rl~~rfn~---------t~TV~dvr~fV~~~~~-~~-~~~-F~L~tt~FP~k~l~D~s~TL~eag 397 (407)
...|.||..+| ..+.+.|.. +.||.+|...|....+ .. ... ..|+ |-.|.|.| +.||.+.|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi---~~Gk~L~D-~~tL~~y~ 87 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI---YCGRKLKD-DQTLDFYG 87 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE---ETTEECCT-TCBHHHHT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE---ECCeECCC-CCcHHHcC
Confidence 46799999999 788888665 5999999999998753 22 345 5676 77899977 58999999
Q ss_pred CCC-eeE
Q 015405 398 IAN-SVV 403 (407)
Q Consensus 398 L~n-avv 403 (407)
+.+ ++|
T Consensus 88 i~~g~~i 94 (107)
T 1x1m_A 88 IQPGSTV 94 (107)
T ss_dssp CCTTCEE
T ss_pred CCCCCEE
Confidence 985 443
No 83
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.17 E-value=0.0034 Score=47.78 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=48.7
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~gk~L~d-~~tL~~~~i~~ 63 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI---FAGKELPN-HLTVQNCDLEQ 63 (76)
Confidence 4678889999889999999999999999986532113344555 66788877 58999999985
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.17 E-value=0.11 Score=44.73 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCEE-EEEcCCCCCHHHHHHHHHhhCCCC--C-----CCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGTRM-VARFNHHHTIRDIHRFIDASRPGS--A-----RNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl-~~rfn~t~TV~dvr~fV~~~~~~~--~-----~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
....|.||+.+|+.+ .+.|..++||.+|..-|....+.. . ..-.|+ |=.|.|+| +.||.+.++..
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI---y~GK~LeD-~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI---SAGKVLEN-SKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE---ETTEECCT-TSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE---ECCeECcC-CCcHHHcCCCc
Confidence 577899999999988 699999999999999997765432 1 233555 88899988 58999999984
No 85
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.16 E-value=0.032 Score=38.70 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
.++.|++.+++ |-+++.|+.-|..++||++.|++-.|+
T Consensus 4 ~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 35789999885 999999999999999999999988775
No 86
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.12 E-value=0.039 Score=40.26 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 6 AEANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 6 ~~~~~e~I~qF~~iTga-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
....++.|++.+++ |- ++..|+.-|..++||++.||+-.|..
T Consensus 8 e~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 8 EVRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 34456789999887 66 99999999999999999999998875
No 87
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.09 E-value=0.053 Score=43.84 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCEE-EEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015405 332 PTTSVQLRLADGTRM-VARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl-~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
...+|.||+ .|+.+ .+.+..++||.+|...|.....-....-.|+ |..|.|.|. ||.+.||.+ +.|+
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~Gk~L~D~--tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD--DWGNIKMKNGMTVL 74 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETTEECCSS--CCCSCCCCSSCEEE
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCcCCCCC--CHHHCCCCCCCEEE
Confidence 356677775 67788 5999999999999999988632224455666 788999885 999999985 4443
No 88
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.09 E-value=0.046 Score=48.33 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 330 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
..+.-.|.||..+|+.+.++++.++||.+|...|.....-......|+ |-.+.|.| +.||.+.||.+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~---~~g~~L~d-~~tL~~~~i~~ 83 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQK 83 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTGGGTCCT
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCccccc-cCCHhHcCCcc
Confidence 344578999999999999999999999999999987632223345666 66788987 68999999985
No 89
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.043 Score=43.92 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=52.2
Q ss_pred EEEEEcCCCCEEEEE--cCCCCCHHHHHHHH-HhhCCCC-CCCeEEEecCCCCccCCCccCchhhcCC--CCeeEEe
Q 015405 335 SVQLRLADGTRMVAR--FNHHHTIRDIHRFI-DASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGI--ANSVVIQ 405 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~r--fn~t~TV~dvr~fV-~~~~~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL--~navvvq 405 (407)
.|-||..+|+.+.+. +..++||.+|...| ... .+. .....|+ |-.|.|.| +.||.+.++ .+++|.+
T Consensus 3 qI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-~gip~~~QrLi---~~Gk~L~D-~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 3 HLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-KASHISEIKLL---LKGKVLHD-NLFLSDLKVTPANSTITV 74 (87)
T ss_dssp EEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTT-SCSSSTTEEEE---ETTEECCT-TCBHHHHCCCGGGCEEEE
T ss_pred EEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh-cCCChHHEEEE---ECCEECcC-cCCHHHcCCCCCCCEEEE
Confidence 688999999988876 55999999999999 543 333 4567787 77899988 589999999 3566654
No 90
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=94.94 E-value=0.085 Score=45.14 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC--------CCCeEEEecCCCCccCCCccCchhhcCCC
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS--------ARNYQLQAMGFPPKQLTDLDQTVEQAGIA 399 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~--------~~~F~L~tt~FP~k~l~D~s~TL~eagL~ 399 (407)
...|.||+.+|+++.+.|..++||.+|...|....|.. .....|+ |=.|.|+| +.||.+.++.
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI---y~GK~LeD-~~TL~~y~I~ 87 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 87 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE---SSSSEEES-SCBTGGGCCC
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 47789999999999999999999999999998743321 2345666 88899987 5899999997
No 91
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.82 E-value=0.064 Score=45.67 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
...|.|+..+|+.+.+.+..+.||.+|..-|.....-......|+ |..+.|.| +.||.+.|+.+ ++|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~i 143 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 143 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 357889999999999999999999999999987532224556776 67899976 68999999985 443
No 92
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.033 Score=41.98 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (407)
..++.|++.+++ |-+++.|++-|..++||++.|++-.|+..++
T Consensus 8 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 8 PPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 356789999985 9999999999999999999999999987654
No 93
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.72 E-value=0.13 Score=41.35 Aligned_cols=73 Identities=8% Similarity=0.187 Sum_probs=54.0
Q ss_pred CceEEEEEcC---CCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecC---CCCc--cCCCccCchhhcCCCC-ee
Q 015405 332 PTTSVQLRLA---DGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMG---FPPK--QLTDLDQTVEQAGIAN-SV 402 (407)
Q Consensus 332 p~t~IqIRL~---dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~---FP~k--~l~D~s~TL~eagL~n-av 402 (407)
...+|.|+.+ +|..+..||..+.||++|...|...-.-......|. .. +|.+ .|+|++.||..-|+.+ ..
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~-~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS-YESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE-EECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEE-EEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 3577888864 788899999999999999999988643224455665 33 5643 3678889999999986 45
Q ss_pred EEe
Q 015405 403 VIQ 405 (407)
Q Consensus 403 vvq 405 (407)
|.+
T Consensus 87 I~V 89 (97)
T 1wjn_A 87 LLV 89 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 94
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=94.68 E-value=0.093 Score=46.82 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=52.6
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |=.|.|.| +.||.+.|+.+ ++|
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE---ECCccccC-cCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987532224556776 66788987 68999999985 443
No 95
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.64 E-value=0.094 Score=45.49 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=50.5
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCC-CCccCCCccCchhhcCCCC
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~F-P~k~l~D~s~TL~eagL~n 400 (407)
.|.||..+|+.+.+.++.++||.+|..-|.....-....-.|+ .| ..+.|.| +.||.+.|+.+
T Consensus 4 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~--~~~~g~~L~d-~~tL~~y~i~~ 67 (159)
T 3rt3_B 4 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA--VHPSGVALQD-RVPLASQGLGP 67 (159)
T ss_dssp EEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEE--EETTCCBCCT-TSCGGGGTCCT
T ss_pred EEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE--EcCCCCCCCC-CCCHHHcCCCC
Confidence 6889989999999999999999999999987632212344555 27 6889966 68999999985
No 96
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.59 E-value=0.06 Score=39.12 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 7 EANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 7 ~~~~e~I~qF~~iTga-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
...++.|++.+++ |- ++..|+.-|..++||++.||+-.|..
T Consensus 10 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3446789999886 78 99999999999999999999988753
No 97
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.54 E-value=0.065 Score=49.04 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.-.|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI 172 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 172 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TCBGGGGTCCTTCEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE---ECCEECCC-CCCHHHCCCCCCCEE
Confidence 357899999999999999999999999999987532223445676 77899988 68999999985 444
No 98
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.032 Score=45.60 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
..+|.||. +|+.+.+++..+.||.+|...|.....-....-.|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~g~tI 94 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSV 94 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE---ETTEECCT-TSBTTTTTCCTTEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 34677786 888889999999999999999987532223445676 66788987 68999999986 444
No 99
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.45 E-value=0.068 Score=39.25 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 8 ANSSLINSFVEITSST-KDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas-~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..++.|++.+++ |.+ +..+++-|..++||++.||+..|...+
T Consensus 8 ~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 8 HFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 346789999887 884 556799999999999999999997643
No 100
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.43 E-value=0.14 Score=40.53 Aligned_cols=69 Identities=10% Similarity=0.163 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCEEEE-EcCCCCCHHHHHHHHHhhCCCCCCCeEEEecC-CCCccCCCccCchhhcCCCC-eeEE
Q 015405 333 TTSVQLRLADGTRMVA-RFNHHHTIRDIHRFIDASRPGSARNYQLQAMG-FPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~-rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~-FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
..+|.|++ .|+.+.+ .+..+.||.+|..-|.....-....-.|+ -. |-.|.|.| +.||.+.||.+ +.|+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi-~~k~~Gk~L~D-~~~L~~~~i~~g~~l~ 78 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL-GLKVKGKPAEN-DVKLGALKLKPNTKIM 78 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE-SCEETTEECCT-TSBHHHHTCCTTEEEE
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE-eeccCCcCcCC-CCCHHHcCCCCCCEEE
Confidence 45788886 7888888 89999999999999988643224455666 23 55688877 58999999985 4443
No 101
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.41 E-value=0.12 Score=41.10 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCEE--EE-EcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeEEee
Q 015405 334 TSVQLRLADGTRM--VA-RFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVIQK 406 (407)
Q Consensus 334 t~IqIRL~dG~Rl--~~-rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvvqr 406 (407)
-.|-|+...|+.. .+ .+..+.||.+|..-|....... ...-.|. ..+=.|.|.| +.||.+.|+.+ ++|+.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~-~~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR-LDPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE-SSTTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE-ecCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 4577888888775 36 8899999999999998853332 3344565 3344678977 58999999986 666654
No 102
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.33 E-value=0.081 Score=41.17 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (407)
..++.|++.+++ |-++.+|+.-|..++||++.|++-.|+..++
T Consensus 28 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 346789999875 9999999999999999999999999986554
No 103
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.25 E-value=0.12 Score=44.92 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
...|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d-~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 148 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE---ECCeecCC-CCCHHHcCCCCCCEE
Confidence 467889999999999999999999999999986532224556777 66789988 68999999985 443
No 104
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.20 E-value=0.015 Score=41.53 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
.++.|++.+++ |.++..|++-|.+++||++.|++-.|+..+
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 45778888887 999999999999999999999999997643
No 105
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.18 E-value=0.12 Score=42.57 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCEEEEEcC-CCCCHHHHHHHHHhhCCCCCCCeEEEecCC------CCc--cC---CCccCchhhcCCCC-
Q 015405 334 TSVQLRLADGTRMVARFN-HHHTIRDIHRFIDASRPGSARNYQLQAMGF------PPK--QL---TDLDQTVEQAGIAN- 400 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn-~t~TV~dvr~fV~~~~~~~~~~F~L~tt~F------P~k--~l---~D~s~TL~eagL~n- 400 (407)
-.|+||-.+|+. .+.+. .+.||.+|..-|.....-......|..... |.. .| .+.+.||.+.||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 358888899965 56788 899999999999876433334445531122 111 44 45679999999986
Q ss_pred eeEE
Q 015405 401 SVVI 404 (407)
Q Consensus 401 avvv 404 (407)
++|.
T Consensus 87 ~~L~ 90 (107)
T 1wf9_A 87 SMVY 90 (107)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5543
No 106
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.96 E-value=0.051 Score=41.46 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
..++|.+..+.||+....|+.-|+.++|||+.||.-.-..
T Consensus 9 t~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999877544
No 107
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.78 E-value=0.26 Score=41.86 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCCCceEEEEE-cCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCe
Q 015405 329 ATLPTTSVQLR-LADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 401 (407)
Q Consensus 329 ~~~p~t~IqIR-L~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~na 401 (407)
......+|.|. .++|.++++-|..+.||++|.+.|.....-....-.|+ |-.|.|.| +.||++.|+.+.
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI---y~GKiLKD-~eTL~~~gIk~g 80 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR---YSGKILKN-NETLVQHGVKPQ 80 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE---ETTEEECS-SCCHHHHSCCSS
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE---ECCeEcCC-cchHHHcCCCCC
Confidence 34556778887 67888999999999999999999987632113445555 88999988 579999999864
No 108
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=93.76 E-value=0.27 Score=39.77 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=53.8
Q ss_pred CCCceEEEEEcCCCC--EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCc---cCCCccCchhhcCCCC-eeE
Q 015405 330 TLPTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPK---QLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~--Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k---~l~D~s~TL~eagL~n-avv 403 (407)
.....+|.|+..+++ .+.++|..+.||.+|..-|.....-....-.|. ...+.+ .|.+++.||.+.|+.+ ++|
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~-~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQ-VFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEE-EEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEE-EecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 345778899988775 689999999999999999987632224455676 444444 5656679999999986 444
No 109
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.67 E-value=0.12 Score=40.41 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 8 ~~~e~I~qF~~iTga-s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..++.|++.+++ |. ++..+++-|..++||++.||+-.|...+
T Consensus 28 ~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 28 RYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp TSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 456789999987 75 7888899999999999999999997643
No 110
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.66 E-value=0.15 Score=40.70 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAA 52 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~~~ 52 (407)
..++.|++.++ .|-++..|+.-|..++||++.|++-.|+..++.
T Consensus 28 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 28 VDEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 35678999998 599999999999999999999999999876553
No 111
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.39 E-value=0.14 Score=51.45 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhC--CCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR--PGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~--~~~-~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
...|.||..+|+.+.+.+..++||.+|...|.... ... .....|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi---y~GK~L~D-~~tL~dygI~~gstI 77 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE---SSSSEECS-SSBTTTTCCCTTSCE
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE---ECCeecCC-cCCHHHcCCCCCCEE
Confidence 45789999999999999999999999999998742 122 3455666 88999987 58999999985 444
No 112
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.06 E-value=0.2 Score=44.21 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
+...|.||..+|+.+.+++..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D-~~tL~~y~i~~g~tl 163 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 163 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TSBSGGGTCCTTCEE
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE---ECCccCCC-CCcHHHhCCCCCCEE
Confidence 3457888999999999999999999999999987632224566777 66788987 68999999986 444
No 113
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=92.56 E-value=0.022 Score=48.40 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|+| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE---ECCEECCC-CCchhhhccCCCCEE
Confidence 4678889999999999999999999999986522113344555 77889987 68999999985 443
No 114
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=92.47 E-value=0.26 Score=48.27 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.....|.||..+|+.+.+.+..+.||.+|..-|.....-....-.|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi---~~Gk~L~D-~~TLsdygI~~gstL 300 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 300 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---eCCeecCC-CCCHHHcCCCCCCEE
Confidence 45678899999999999999999999999999987632223455676 66889977 68999999985 443
No 115
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.44 E-value=0.18 Score=38.20 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQW-NLDAAVSTFLDNAAA 51 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~w-dLe~Av~~fy~~~~~ 51 (407)
++.|+|.++ .|-++..|+.-|..++| |++.|++-.|+..++
T Consensus 20 e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 20 GSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 357888888 59999999999999999 999999999976543
No 116
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.26 E-value=0.26 Score=39.30 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHc-CCCHHHHHHHHHhcccc
Q 015405 7 EANSSLINSFVEITSSTKDEALFFLESH-QWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 7 ~~~~e~I~qF~~iTgas~~~A~~yLe~~-~wdLe~Av~~fy~~~~~ 51 (407)
...++.|++.++ .|-++..|++-|..+ |||++.|++-.|+..++
T Consensus 27 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 27 VANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 345788999998 499999999999988 59999999999987654
No 117
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.24 E-value=0.24 Score=38.51 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcC-CCHHHHHHHHHhcccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQ-WNLDAAVSTFLDNAAA 51 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~-wdLe~Av~~fy~~~~~ 51 (407)
..++.|++.++ .|-++..|++-|..++ ||++.|++-.|+..++
T Consensus 8 ~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 8 LDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp SCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 45678999999 5999999999999998 5899999999987654
No 118
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.19 E-value=0.11 Score=39.27 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHc-CCCHHHHHHHHHhcccc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESH-QWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~-~wdLe~Av~~fy~~~~~ 51 (407)
.++.|+|.++ .|-++..|++-|..+ +||++.|++-.|+..++
T Consensus 9 ~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 9 ELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 4567999998 599999999999999 79999999999987654
No 119
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=91.61 E-value=0.033 Score=49.19 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.||.+ ++|
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEEccc-cCcHHHcCCCCCCEE
Confidence 4778999999999999999999999999976522113334554 77889987 58999999985 443
No 120
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.59 E-value=0.9 Score=37.40 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
...+|.|+-.+|+.+.+++..++++..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|.+
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 87 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 87 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE---SSSSBCCT-TSCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567888888999999999999999999988766533334577777 88899986 47999999985
No 121
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=91.57 E-value=0.77 Score=36.85 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
..+|.|+-.+|+.+.+++..+.++..|.+.+.....-....+.|+ |=.+.|.+ +.|+++++|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 68 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 68 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 457777878999999999999999999988876543335677777 88899987 47999999985
No 122
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.52 E-value=0.67 Score=35.16 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.+|.|+-.+|+.+.+++..+.+++.|.+.......-....+.|+ |-.+.|.+ +.|.++++|.+ .+|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMEDEDTI 68 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE---ETTEECCT-TCCTTTTTCCTTEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 46788888999999999999999999988766533235677777 78888987 47999999985 444
No 123
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.44 E-value=0.35 Score=35.98 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 8 ~~~e~I~qF~~iTga-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
..++.|++.+++ |- ++..+++-|..++||++.||+..|..
T Consensus 16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 346689999887 75 68888999999999999999998864
No 124
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.35 E-value=0.34 Score=34.28 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 8 ~~~e~I~qF~~iTga-s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
..++.|++.+++ |- ++..++.-|..++||++.||+-.|.
T Consensus 6 ~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 346788999887 75 6788899999999999999998874
No 125
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.92 E-value=1 Score=36.83 Aligned_cols=67 Identities=7% Similarity=0.206 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
..+.|++ .|+.+.+.+..++||.+|..-|.....-....=.|+ .||...|.| +.||.+.+|.+ ++|+
T Consensus 10 ~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi--~~~~gkL~D-~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 10 LDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK--GWKTGDVED-STVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE--CCSSSCCCT-TSBHHHHCCCSEEEEE
T ss_pred EEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE--ccCCCCCCC-cCCHHHcCCCCCCEEE
Confidence 4566666 788889999999999999999986522112222355 567666766 68999999986 4443
No 126
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.58 E-value=0.57 Score=37.78 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
..+|.|+-.+|+.+.+++..+++|..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 70 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 70 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 456777778899999999999999999988876533324567776 88999987 47999999985
No 127
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.05 E-value=1.6 Score=33.80 Aligned_cols=65 Identities=6% Similarity=0.133 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCC-EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~-Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
...+|.|+-.+|+ .+.+++..++++..|.+.+.....-....+.|+ |=.+.|.+ +.|+++++|.+
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~med 71 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF---FDGTKLSG-KELPADLGLES 71 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE---ETTEECCS-CCCHHHHTCCT
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3467888889996 899999999999999988766533234567777 78888887 47999999985
No 128
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=90.02 E-value=0.87 Score=36.51 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
...+|.|+-.+|+.+.+++..++++..|.+.+.....-....+.|+ |=.+.|.+ +.|+++++|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~dl~med 80 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 80 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567777778899999999999999999988766533334566666 88899986 47999999985
No 129
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=89.73 E-value=1.4 Score=36.72 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
...+|.|+-.+|+.+.+++..+.++..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|..
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi---FdG~~L~~-~~Tp~dl~mED 89 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL---FDGTPIDE-TKTPEELGMED 89 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE---SSSCBCCS-SSHHHHHHCSS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567888888999999999999999999988766533234567777 88899987 48999999986
No 130
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.45 E-value=0.64 Score=32.62 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
..++.|++.++ .|-+++.|++-|..++ |++.|++-.|+.
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 8 VNQQQLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SCHHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 35678999998 5999999999999997 999999988753
No 131
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=89.33 E-value=0.77 Score=37.19 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=52.1
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.|-|..++|.|.+++...+.|+.+|.+-....-.-....|.|. |-+|.| |.++.+.=+||-| |.+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk---h~~k~l-DLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK---FQRTVL-DLSLQWRFANLPNNAKL 76 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE---ETTEEE-SSSCBHHHHCCCSSCEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE---eCCEec-cccceeEecCCCCCCEE
Confidence 6889999999999999999999998766555432336789998 557777 6689999999996 543
No 132
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.35 E-value=0.69 Score=34.47 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 10 SSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 10 ~e~I~qF~~iT-gas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
++.|.++.++- +.+..+.+.-|+++++|++.||+..++-..
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 35666666664 899999999999999999999999997543
No 133
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.26 E-value=2.5 Score=33.92 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
-+.+|+|-++--+..++|.+..-++++|+-.|.....-....|.|. ...=..+--|.+.+|.|.||..
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll-~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLL-KDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEE-SCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEe-cCCCCCcccchhcchhhhhhhh
Confidence 5889999999988999999999999999999987654446789998 5555555557789999999986
No 134
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=88.10 E-value=0.74 Score=39.00 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=45.9
Q ss_pred EEEEcCCCC-EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCC
Q 015405 336 VQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIA 399 (407)
Q Consensus 336 IqIRL~dG~-Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~ 399 (407)
|+||.--|+ .+.+.+..++||.+|..-|.....-......|+ |-.|.|+| +.||.+.|+.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi---~~Gk~LeD-~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY---KDDQLLDD-GKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE---ECCeECCC-CCCHHHcCcc
Confidence 556666665 478899999999999999987532113455666 77899977 5899999999
No 135
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=87.79 E-value=0.71 Score=38.17 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVST 44 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~ 44 (407)
.+.|+--|+-||+|.+.|+.-|+.|+|||-.||-.
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~ 100 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMR 100 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 46788889999999999999999999999999853
No 136
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.58 E-value=1.9 Score=34.30 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCC-EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCC-CCcc---CCCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPKQ---LTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~-Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~F-P~k~---l~D~s~TL~eagL~n-avv 403 (407)
..+|.|+-.+.. .+.+++..+.||.+|..-|.....-....-.|. ..- ..+. |.+++.||.+.|+.+ ++|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~-~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELE-LYGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCE-EECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEE-EeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 367788876554 588999999999999999988743224455666 333 2343 545579999999986 444
No 137
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=86.92 E-value=0.75 Score=38.44 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
.++.|++.+++=-.++..++.-|..++||++.||+..|..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3678888888544578999999999999999999999975
No 138
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=86.70 E-value=2.7 Score=34.76 Aligned_cols=64 Identities=8% Similarity=0.194 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
...+|.|+- +|+.+.+++..+.++..|.+.+..........+.|+ |=.+.|.+ +.|.++++|.+
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~---FdG~rl~~-~~Tp~dl~med 93 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 93 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE---ECCeEcCC-CCCHHHcCCCC
Confidence 456677777 899999999999999999988765433224566776 88888886 47999999985
No 139
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=86.41 E-value=1.2 Score=32.00 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=34.3
Q ss_pred hHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 9 NSSLINSFVEI-TSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 9 ~~e~I~qF~~i-Tgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
.++.+.+.+++ -.++..++++-|+.++||++.||+....-
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45667777777 68999999999999999999999998865
No 140
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=86.23 E-value=2.8 Score=33.91 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=51.6
Q ss_pred CCCceEEEEEcCCCC--EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCC-CCc---cCCCccCchhhcCCCC-ee
Q 015405 330 TLPTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPK---QLTDLDQTVEQAGIAN-SV 402 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~--Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~F-P~k---~l~D~s~TL~eagL~n-av 402 (407)
+....+|.|...+.+ .+.++|..+.||++|..-|.....-....-.|. ..= ..+ .|.+++.||.+.++.+ +.
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi-~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALE-LYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEE-EECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEE-EecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 455788888887664 689999999999999999987632224455665 211 113 3556679999999985 44
Q ss_pred E
Q 015405 403 V 403 (407)
Q Consensus 403 v 403 (407)
|
T Consensus 90 I 90 (97)
T 2kj6_A 90 L 90 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 141
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=84.66 E-value=2.7 Score=35.32 Aligned_cols=66 Identities=8% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
....+|.|+-.||..+.+++..+.++.-|.+............+.|+ |=.+.|.+ +.|.++++|-+
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl---FDG~rI~~-~~TP~dL~MED 103 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEE 103 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE---ECCeECCC-CCCHHHcCCCC
Confidence 35667777778999999999999999999987765433335677777 88888887 58999999985
No 142
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.97 E-value=1.6 Score=32.93 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHhccccc
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQW-NLDAAVSTFLDNAAAA 52 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~w-dLe~Av~~fy~~~~~~ 52 (407)
++.|++.++ .|-+++.|++-|..++| |++.|++-.|+..++.
T Consensus 10 e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 10 PSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 346788888 69999999999999875 9999999999876553
No 143
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=83.89 E-value=1.6 Score=36.77 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..++.|.+.+++ |.++..|+.-|..++||++.|++-.|...+
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 356789999985 999999999999999999999999987654
No 144
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.53 E-value=2.7 Score=32.12 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (407)
..+.|+|.+++=-.+.....+-|..+++|++.||+-.|...++
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4557888887544677777999999999999999999987654
No 145
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.22 E-value=2.3 Score=32.03 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..+.|.+.++ .|-++.+|+.-|+.++.|+|.|++=-|...+
T Consensus 19 e~e~V~~Lvs-MGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 19 ERQCVETVVN-MGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHH-HHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3456777664 5899999999999999999999999998754
No 146
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=81.93 E-value=3.2 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
++.|++.|+ .|-+.+.|++-|..++||++.|.+.-.+
T Consensus 12 ~~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMG-EGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467888877 4999999999999999999999876543
No 147
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=81.36 E-value=4.5 Score=33.72 Aligned_cols=71 Identities=10% Similarity=0.196 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCC-EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCC-CCc---cCCCccCchhhcCCCC-eeEE
Q 015405 333 TTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPK---QLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 333 ~t~IqIRL~dG~-Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~F-P~k---~l~D~s~TL~eagL~n-avvv 404 (407)
..+|.|+-..+. .+.++|..+.||++|..-|.....-....-.|. ..= -.+ .|.+++.||.+.||.+ ++|.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~-~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQ-LFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEE-EECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEE-EecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 467778776554 588999999999999999988632224445565 211 123 3445579999999986 5443
No 148
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.10 E-value=3.7 Score=29.97 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 11 SLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 11 e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
..|.+.|+ .|-+.+.|++-|..++||++.|.+...+.
T Consensus 11 ~~I~~L~~-lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 11 SEIERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45888877 49999999999999999999998877654
No 149
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.80 E-value=3.8 Score=32.01 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 9 NSSLINSFVEITSSTK-DEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~-~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
++-+++|..+|||+.. ..-.+-|++.++||..||...-+.
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 4457999999999865 667788999999999999877554
No 150
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=80.23 E-value=2.8 Score=41.04 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecC-CCCccCCCccCchhhcCCCC-eeEE
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMG-FPPKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~-FP~k~l~D~s~TL~eagL~n-avvv 404 (407)
...+|.|+. .|+.+.+.+..+.||++|..-|.....-....=.|+ .. |..|.|.| +.||.+.||.+ +.|+
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi-~~k~~Gk~l~D-~~~L~~~~ik~g~~l~ 75 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL-NLKYKGKTAAD-NVKISALELKPNFKLM 75 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET-TCBSSSSBCCT-TSBTTSSCCC--CEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe-ecccCCcccCc-cccHHHcCCCCCCEEE
Confidence 356888996 788899999999999999999987532212334565 22 77788888 58999999985 4443
No 151
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.21 E-value=4 Score=29.94 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 9 ~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
-..++.|+.+.==.+...-+..|..++|||+.||..-....
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 34478899887667999999999999999999999988654
No 152
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=78.54 E-value=12 Score=30.39 Aligned_cols=68 Identities=9% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCCceEEEEEcCCCC-EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCe
Q 015405 330 TLPTTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 401 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~-Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~na 401 (407)
.....+|.|+-.+|. .+.+++..+.+++-|.+.......-....+.|+ |=...|.. +.|.++++|.+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~---FDG~rI~~-~~TP~dLdMEDg 90 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF---FDGTKLSG-RELPADLGMESG 90 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE---ETTEECCS-CSCHHHHTCCTT
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEcCC-CCCHHHcCCCCC
Confidence 345678888889995 789999999999999887665433334567776 77777875 579999999863
No 153
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.72 E-value=4.6 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 8 ANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 8 ~~~e~I~qF~~iT-gas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..++.+.++.++- ..+..+.+.-|+++++|++.||+..+.-..
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 3466788887775 899999999999999999999999987443
No 154
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=74.37 E-value=4.1 Score=34.45 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=43.2
Q ss_pred EEcCCCC-EEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 338 LRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 338 IRL~dG~-Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
||+.-++ .+.+.+..++||.+|..-|.....-....-.|+ |=.|.|+| +.||.+.|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI---~~Gk~LeD-~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY---KDDQLLDD-GKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE---eCCeECCC-cCCHHHcCCCc
Confidence 4444455 577789999999999999986522112334565 67788977 68999999986
No 155
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=74.24 E-value=0.64 Score=42.50 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchh
Q 015405 335 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVE 394 (407)
Q Consensus 335 ~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~ 394 (407)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|+| +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI---f~GK~LeD-~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV---NNGFIAPN-TELVT 57 (189)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE---ecCeECCC-CCccc
Confidence 4778999999999999999999999999986522113445665 77899987 57887
No 156
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.31 E-value=0.65 Score=39.66 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 8 ANSSLINSFVEITSST-KDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas-~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
..+-+|+|..+|||+. ...=.+-|+++++||..||..+-+..
T Consensus 17 ~~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~ 59 (129)
T 2lva_A 17 QGQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDER 59 (129)
Confidence 4455899999999998 67788899999999999999886543
No 157
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=74.11 E-value=5 Score=31.50 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=44.3
Q ss_pred eEEEEEcC-CCCE-EEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecC-----CCCccCCCccCchhhcCCCC-eeE
Q 015405 334 TSVQLRLA-DGTR-MVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMG-----FPPKQLTDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 334 t~IqIRL~-dG~R-l~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~-----FP~k~l~D~s~TL~eagL~n-avv 403 (407)
.+|.|.-. .+.+ ..+||..+.||.+|..-|.....-....-.|. .- |-.+.++| +.||.+-|+.+ ++|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi-~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQ-LIDDRGITIEKNMAN-DKQLGYYQCRDEFVI 78 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEE-EECTTSCEEESSCCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEE-EecCCCCceeeEcCC-CCCHHHCCCCCCCEE
Confidence 34555533 2334 58999999999999999987532222334454 21 34455555 68999999986 444
No 158
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=72.83 E-value=7 Score=32.24 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=44.0
Q ss_pred CceEEEEEcCC--C--CEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCC
Q 015405 332 PTTSVQLRLAD--G--TRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIA 399 (407)
Q Consensus 332 p~t~IqIRL~d--G--~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~ 399 (407)
...+++|.+.| + ..+.+.+..++||.+|.+-|...-.-....-.|. |-.+.++| +.||.+.|+.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli---~ggkll~D-~~TL~~ygI~ 88 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV---IGQRLARD-QETLHSHGVR 88 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEEECT-TCBTGGGTCC
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe---ccCeEccC-cCcHHHcCCC
Confidence 35677777776 3 4678889999999999999986522112222344 44554445 7899999994
No 159
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=72.39 E-value=8.1 Score=35.59 Aligned_cols=65 Identities=8% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
....+|.|+. +|..+.+++..+.++..|.+............+.|+ |=.+.|.+ +.|.++++|.+
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL---FDGqRI~~-ddTPeDLdMED 119 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL---YDGIEIQA-DQTPEDLDMED 119 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE---ETTEECCS-SCCTTTTTCCT
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE---ECCeecCC-CCCHHHcCCCC
Confidence 3456788875 999999999999999999987766543334567776 77888887 58999999986
No 160
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=72.27 E-value=15 Score=33.96 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=42.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCC-C--CccCCCccCchhhcCCCC-eeEE
Q 015405 346 MVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGF-P--PKQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 346 l~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~F-P--~k~l~D~s~TL~eagL~n-avvv 404 (407)
++++|...+||.+|.+.|...-.-. ...+.|- .-+ . ...|.|.++||++|+|.. .+|+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW-~~~~~~~~~~L~~~~~tl~d~~L~~~Q~il 216 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLW-NKYMSNTYEQLSKLDNTIQDAGLYQGQVLV 216 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEE-ECSSSSSCEECCCTTSBTTTTTCCTTEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEE-EecCCCCHhhhcCCCCCHHHhCCCCCCEEE
Confidence 4588999999999999998863322 3468887 323 2 234667889999999994 5554
No 161
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=71.87 E-value=9.3 Score=35.02 Aligned_cols=65 Identities=8% Similarity=0.177 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015405 331 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 400 (407)
Q Consensus 331 ~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~k~l~D~s~TL~eagL~n 400 (407)
....+|+|+. +|..+.+++..+.++..|.+.......-....+.|+ |=.+.|.+ +.|.+++++-+
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~---FdG~rI~~-~~TP~dL~MEd 91 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 91 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3456788886 999999999999999999987755432224567776 88899987 58999999985
No 162
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=68.16 E-value=13 Score=26.68 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=38.2
Q ss_pred CChhhhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 4 PTAEANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 4 ~~~~~~~e~I~qF~~iT-gas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
|.+-..+++|.|-..+. |-+..+-.+-|..+|-|++.||+..+.-.
T Consensus 4 p~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 4 PASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp CGGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred ccccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 55566788999887765 88999999999999999999999988643
No 163
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=67.83 E-value=6.9 Score=35.89 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
-++|.+..+.||+.--.|+.-|+.++||++.|+.-.-..+
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG 43 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERG 43 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4689999999999999999999999999999998776543
No 164
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=65.08 E-value=13 Score=33.94 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=42.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCC-CC--ccCCCccCchhhcCCCC-eeEE
Q 015405 345 RMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGF-PP--KQLTDLDQTVEQAGIAN-SVVI 404 (407)
Q Consensus 345 Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~F-P~--k~l~D~s~TL~eagL~n-avvv 404 (407)
..+++|...+||.+|+..|...-.-. .+.+.|- .-+ .. ..|++.++||++|+|.. ..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW-~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW-NKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEE-EEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEE-EecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 35788999999999999998863222 2467776 222 22 34567789999999994 5544
No 165
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=64.84 E-value=7.1 Score=37.82 Aligned_cols=38 Identities=18% Similarity=0.016 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
-++|.+..+.||+.--.|+.-|+.++||++.|+.---.
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999987765
No 166
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=61.23 E-value=13 Score=31.20 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 11 SLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 11 e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
++|.+|++ .|-++..|+.-|..+++|++.||+-.|..
T Consensus 78 ~~v~~L~e-MGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKE-MGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45777765 48999999999999999999999998865
No 167
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=57.08 E-value=31 Score=26.55 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=37.9
Q ss_pred ChhhhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 5 TAEANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 5 ~~~~~~e~I~qF~~iT-gas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
+...-+++|.|-..|. .......+..|+.++.|.|.+|+..+++
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 3445667888888886 7888999999999999999999999985
No 168
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=54.72 E-value=25 Score=34.26 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=48.0
Q ss_pred CCCceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCC------ccCCCccCchhhcCC
Q 015405 330 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPP------KQLTDLDQTVEQAGI 398 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~------k~l~D~s~TL~eagL 398 (407)
......|.|+|+||+.+.+++..+.|++||.+-|...-.-. ..-|.|. ..-+. ...-+.+++|.+.+.
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~-~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLV-RELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEE-CCC----------CCCTTSBTGGGTC
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEE-EEecccccchHHHHHhcCchhHhhCC
Confidence 34467899999999999999999999999999998763222 4568887 44432 122255677776554
No 169
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=52.63 E-value=22 Score=34.75 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCC----CCCCeEEEec--CCCCccC-CCccCchhhcCCCC-eeE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPG----SARNYQLQAM--GFPPKQL-TDLDQTVEQAGIAN-SVV 403 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~----~~~~F~L~tt--~FP~k~l-~D~s~TL~eagL~n-avv 403 (407)
..+|.|+++ +.....+|..+.||.|+...|...-++ ....|-|. . ..|.|-. -+...||+..+|.+ +.|
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~-~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLF-LSDDDPKKGIWLEAGKALDYYMLRNGDTM 79 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEE-ECCSSGGGCEECCTTSBGGGGTCCTTCEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEe-ccCCCCCcCEeccCCCCHHHhCCCCCcee
Confidence 357899999 777899999999999999999776554 25678887 4 2344432 24467999999985 444
No 170
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=43.29 E-value=26 Score=33.29 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCC--ccCCCccCchhhc
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPP--KQLTDLDQTVEQA 396 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~--k~l~D~s~TL~ea 396 (407)
...|.|.|+||+.+.+.+..+.|++||.+-|...-.-. ..-|.|. ..-+. +..-|....|.+.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~-~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA-IWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEE-EEEETTEEEECCTTSBHHHH
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEE-EEcCCCccchhccchhHHHh
Confidence 45789999999999999999999999999998763222 3447776 22221 1223445666554
No 171
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=43.07 E-value=63 Score=25.24 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=51.0
Q ss_pred EEEEEc--CCCCEEEEEcCCCCCHHHHHHHHHhhCCCC--CCC-eEEEecCCCCccCCCccCchhhcCCCCeeEEe
Q 015405 335 SVQLRL--ADGTRMVARFNHHHTIRDIHRFIDASRPGS--ARN-YQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQ 405 (407)
Q Consensus 335 ~IqIRL--~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~--~~~-F~L~tt~FP~k~l~D~s~TL~eagL~navvvq 405 (407)
.|-|+| -.|+.+-+|+...+||..|.+-|..+-.-. ..+ |.|. ..=+...|.+ ..+|.+.++.|+-+++
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~ir-v~NK~~~L~~-~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIR-VVNKDKVFSG-ECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEE-EGGGTEEEET-TSBTGGGTCCTTCEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEE-EecCCEEEcC-CCEEeeCCcCCCCEEE
Confidence 466666 688899999999999999999887753222 233 7887 4556666666 5799999999866543
No 172
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=39.36 E-value=34 Score=31.95 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHhC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Q 015405 6 AEANSSLINSFVEITS-------STKDEALFFLESHQWNLDAAVSTFL 46 (407)
Q Consensus 6 ~~~~~e~I~qF~~iTg-------as~~~A~~yLe~~~wdLe~Av~~fy 46 (407)
++.+.+.|++|.+... .+...-.+||.+++||++.|...+-
T Consensus 27 ~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 27 DSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456788999877642 6788999999999999999987763
No 173
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=38.02 E-value=15 Score=36.54 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (407)
..++.|++.|+ .|-+++.|+.-|..++||++.||+-.|..-+
T Consensus 167 ~~~~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip 208 (368)
T 1oqy_A 167 EYETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLLTGIP 208 (368)
T ss_dssp THHHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTTTSST
T ss_pred chHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 36678888887 4999999999999999999999999987533
No 174
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=38.02 E-value=56 Score=23.96 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
++.|.+.|+ .|-|.+.|++-|..++.|++.|.+-..+-
T Consensus 8 e~~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHH-cCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 456887776 59999999999999999999999887764
No 175
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.91 E-value=50 Score=26.88 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhC-CCCCCCeEEEecCCCC----ccCCCccCchh
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR-PGSARNYQLQAMGFPP----KQLTDLDQTVE 394 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~-~~~~~~F~L~tt~FP~----k~l~D~s~TL~ 394 (407)
-.|+|=+.||+-..+-+..++|++||-+.+.... ......|.|+ -..|- |.|+|...-++
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv-E~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV-ECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE-EEETTTTEEEEECSSSCHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE-EecCCCCcEEeccCchhHHH
Confidence 4788999999999999999999999999887543 3337889999 68885 55666554443
No 176
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=35.14 E-value=52 Score=31.58 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHh-------CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015405 6 AEANSSLINSFVEIT-------SSTKDEALFFLESHQWNLDAAVSTFL 46 (407)
Q Consensus 6 ~~~~~e~I~qF~~iT-------gas~~~A~~yLe~~~wdLe~Av~~fy 46 (407)
++.+.+.|+||.+.. -.+...-.+||.+.+||++.|+..+-
T Consensus 36 t~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 36 TKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456778899998875 36788999999999999999988774
No 177
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=33.41 E-value=32 Score=32.93 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCCceEEEEEcCCCCEEEEEcCC--CCCHHHHHHHHHhhCCCCCCCeEEEecCCCC
Q 015405 330 TLPTTSVQLRLADGTRMVARFNH--HHTIRDIHRFIDASRPGSARNYQLQAMGFPP 383 (407)
Q Consensus 330 ~~p~t~IqIRL~dG~Rl~~rfn~--t~TV~dvr~fV~~~~~~~~~~F~L~tt~FP~ 383 (407)
+.|..+|.|-|+||+...+.|.. +.|+++|.+-+.- +.....-|.|. ..-|.
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~lgL-~~~~~~~FaL~-~~~~~ 55 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRL-SQETQQYFTIW-ICSEN 55 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTSSC-CTTGGGGEEEE-EECSS
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHhCc-CccccCeeEEE-EECCc
Confidence 46788999999999999999999 8999999543211 11113458997 45554
No 178
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=31.74 E-value=72 Score=34.01 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQ 377 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~ 377 (407)
...++|+|+||+.+.+.+....|+++|.+.|...-.-. ..-|.|.
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~ 308 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLY 308 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeE
Confidence 45799999999999999999999999999998864322 4578887
No 179
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=30.98 E-value=26 Score=35.03 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=30.6
Q ss_pred CCceEEEEEecCc--------eeecCCCCCCCCChhhHHHHHHHHc---CC--CCCcccCCC
Q 015405 222 ENVSHNITFWRNG--------FTVDDGPLRGMDDPANASFLESIMR---SE--CPRELEPAD 270 (407)
Q Consensus 222 ~~~~~~it~w~nG--------F~VdDGplr~yddP~N~~fL~~I~~---G~--~P~eL~~~~ 270 (407)
++.-..|+||||| |.|.-.-|+.|| .||++|.+ .. +|.-...+|
T Consensus 62 ~~kAKrV~fyrNGD~~f~G~~~~V~~~r~~tfd-----~lL~~lT~~Ls~~v~LP~GVR~i~ 118 (373)
T 4atu_I 62 EKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFD-----ALLADLTRSLSDNINLPQGVRYIY 118 (373)
T ss_dssp --CCEEEEEEESSCSSCCCEEEEECTTTCSSHH-----HHHHHHHHHSCCSSSCTTSCSEEE
T ss_pred CccceEEEEEeCCCCCCCCeEEEECCcccCCHH-----HHHHHHHHHhhccCCCCceeEEEE
Confidence 4567899999999 888886676665 89998764 23 455555555
No 180
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=30.84 E-value=1.2e+02 Score=21.43 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
+..|...++ .|-+.+.|++-|..++.|++.|.+-..+
T Consensus 5 e~~I~~L~s-~Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 5 SSEIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHH-TTBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345666655 4999999999999999999999887654
No 181
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=30.38 E-value=29 Score=25.29 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015405 8 ANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFL 46 (407)
Q Consensus 8 ~~~e~I~qF~~iT-gas~~~A~~yLe~~~wdLe~Av~~fy 46 (407)
.+.+.|+++.++- +.+.++-+.-|++++|+++.||+...
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4667788888875 89999999999999999999998765
No 182
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=27.89 E-value=28 Score=33.15 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
+..+.-.+.+||++.+.|+..|+.+++++-.||-....
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 282 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILS 282 (306)
T ss_dssp HHHHHHHHHHSCCCC-----------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHh
Confidence 33455566789999999999999999999999998754
No 183
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=27.46 E-value=40 Score=30.62 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHh----------CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015405 8 ANSSLINSFVEIT----------SSTKDEALFFLESHQWNLDAAVSTFL 46 (407)
Q Consensus 8 ~~~e~I~qF~~iT----------gas~~~A~~yLe~~~wdLe~Av~~fy 46 (407)
.+.+.|++|.... ..+.....+||.+++||++.|...+-
T Consensus 7 ~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~ 55 (262)
T 1r5l_A 7 LLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLK 55 (262)
T ss_dssp --CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445566666553 25789999999999999999988663
No 184
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=26.94 E-value=72 Score=32.82 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC--CCCeEEE
Q 015405 333 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS--ARNYQLQ 377 (407)
Q Consensus 333 ~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~--~~~F~L~ 377 (407)
...|+|.|+||+.+.+.+..+.|++||.+-|...-.-. ..-|.|.
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~ 262 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALF 262 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEE
Confidence 46899999999999999999999999999998763222 2357887
No 185
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=25.83 E-value=67 Score=30.29 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=44.4
Q ss_pred CceEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCcc--CCCccCchhhcCC
Q 015405 332 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQ--LTDLDQTVEQAGI 398 (407)
Q Consensus 332 p~t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~k~--l~D~s~TL~eagL 398 (407)
....|.|.|+|| .+.+.+..+.|++||.+-|...-.-. ..-|.|. .. .... .-|.+.+|.+.+.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~-~~-~~~~~~wL~~~~~i~~q~~ 87 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQ-YT-IKDTVAWLKMDKKVLDHDV 87 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEE-EE-ETTEEEECCTTSBGGGSSC
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEE-EE-eCCcCeeCCCccCHHHcCC
Confidence 356899999999 67899999999999999987753221 3458887 33 2222 1255567776543
No 186
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=25.42 E-value=68 Score=26.56 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Q 015405 10 SSLINSFVEITSSTKDEALFFLESHQW-NLDAAVSTFLDNAAA 51 (407)
Q Consensus 10 ~e~I~qF~~iTgas~~~A~~yLe~~~w-dLe~Av~~fy~~~~~ 51 (407)
.+.|.+.++ .|-+...|+.-|..+++ |++.|++-.+...++
T Consensus 4 ~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 356777777 89999999999999977 899999988876654
No 187
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=25.23 E-value=1.2e+02 Score=25.18 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 8 ~~~e~I~qF~~iTgas~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
.+.++|.++++ .|-+...|+.-|..++.|.+.|++-.|...
T Consensus 7 ~e~~~v~~l~~-MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 7 SERQCVETVVN-MGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 35678888866 699999999999999999999999998864
No 188
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=24.14 E-value=73 Score=29.61 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCEEEEEcCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCcc--CCCccCchhhcCC
Q 015405 334 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQ--LTDLDQTVEQAGI 398 (407)
Q Consensus 334 t~IqIRL~dG~Rl~~rfn~t~TV~dvr~fV~~~~~~~-~~~F~L~tt~FP~k~--l~D~s~TL~eagL 398 (407)
..|.|.|+||+ +.+.+..+.|++||.+-|...-.-. ..-|.|. ..-+... .-|.+.+|.+.+.
T Consensus 2 i~~~V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~-~~~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 2 ISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQ-YQDTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp EEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEE-EEBTTSCEEECCSSSBGGGSCB
T ss_pred EEEEEEECCce-EEEEECCCCcHHHHHHHHHHHcCCCCcceeEEE-EECCCCceeecccccCHHhhcc
Confidence 47899999994 6799999999999999997752221 3458887 3323322 2255677776643
No 189
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=22.41 E-value=43 Score=27.20 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 22 STKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 22 as~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
.++++||++| +|||.|-+.||..
T Consensus 72 L~e~q~Rqll----fDle~aY~~F~~~ 94 (96)
T 2j9u_A 72 LTETQIRELL----FDLELAYKSFYAL 94 (96)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHH
Confidence 6789999999 7899999999863
No 190
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=22.20 E-value=1.5e+02 Score=23.43 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015405 13 INSFVEITS--STKDEALFFLESHQWNLDAAVSTFLDNA 49 (407)
Q Consensus 13 I~qF~~iTg--as~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (407)
++|-.+|-| +++.+-+.-.=.+++|++.||+.+++..
T Consensus 38 Ld~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~ 76 (83)
T 1ufz_A 38 LDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQD 76 (83)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 677788887 7888888888899999999999999764
No 191
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=21.97 E-value=44 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015405 22 STKDEALFFLESHQWNLDAAVSTFLDN 48 (407)
Q Consensus 22 as~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (407)
.++++||++| +|||.|-+.||..
T Consensus 77 L~e~q~Rqll----fDle~aY~~F~~~ 99 (102)
T 2j9w_A 77 LDDSQVRQML----FDLESAYNAFNRF 99 (102)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHH
Confidence 6789999999 7899999999964
No 192
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=20.66 E-value=1.3e+02 Score=29.43 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHh--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015405 6 AEANSSLINSFVEIT--------SSTKDEALFFLESHQWNLDAAVSTFLD 47 (407)
Q Consensus 6 ~~~~~e~I~qF~~iT--------gas~~~A~~yLe~~~wdLe~Av~~fy~ 47 (407)
.+.+.+.|++|.+.. -.+...-.+||.+++||++.|+..+-.
T Consensus 9 ~~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 9 SPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp CHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 456777888887652 367789999999999999999887643
Done!