BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015407
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 69 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 103
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 77 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 111
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 77 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 111
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 76 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 110
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 76 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 110
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 76 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 110
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSL 233
R + +D KH D++ ++V+GY K K Y AT L
Sbjct: 87 RPLPGKDSKHSDYINANYVDGY----NKAKAYIATQGPL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,614,782
Number of Sequences: 62578
Number of extensions: 453112
Number of successful extensions: 1111
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 7
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)