Query 015407
Match_columns 407
No_of_seqs 271 out of 1315
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2E-112 4E-117 855.9 35.7 404 1-407 1-408 (408)
2 KOG2288 Galactosyltransferases 100.0 9.9E-75 2.2E-79 545.8 18.5 265 135-407 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 3.2E-50 6.9E-55 425.7 25.4 243 134-402 381-631 (636)
4 KOG2287 Galactosyltransferases 100.0 2.6E-48 5.7E-53 391.2 18.0 240 137-397 94-339 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 6.5E-47 1.4E-51 350.8 17.1 191 152-350 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.1E-31 2.3E-36 267.8 19.7 241 133-400 75-360 (382)
7 PF13334 DUF4094: Domain of un 100.0 1.5E-28 3.2E-33 203.8 7.5 93 16-112 1-94 (95)
8 PF02434 Fringe: Fringe-like; 99.8 4.9E-18 1.1E-22 164.4 12.8 192 138-356 6-209 (252)
9 KOG2246 Galactosyltransferases 99.6 2.2E-15 4.7E-20 152.9 12.7 169 134-349 87-268 (364)
10 PLN03153 hypothetical protein; 99.0 3E-09 6.5E-14 111.0 14.9 183 137-356 121-319 (537)
11 KOG3708 Uncharacterized conser 97.3 0.0012 2.7E-08 69.1 9.7 199 138-396 26-244 (681)
12 PF01755 Glyco_transf_25: Glyc 95.6 0.27 5.9E-06 45.2 13.0 93 142-251 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 94.9 0.56 1.2E-05 43.2 12.8 114 226-345 77-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 94.9 0.76 1.7E-05 46.8 14.8 161 176-345 70-241 (373)
15 cd04192 GT_2_like_e Subfamily 94.3 1.3 2.7E-05 40.4 13.4 167 177-350 29-204 (229)
16 cd02525 Succinoglycan_BP_ExoA 93.8 3.8 8.1E-05 37.8 15.8 160 175-346 30-197 (249)
17 cd02520 Glucosylceramide_synth 93.7 4.3 9.3E-05 36.8 15.6 138 176-349 30-171 (196)
18 cd02510 pp-GalNAc-T pp-GalNAc- 92.8 4.5 9.7E-05 39.5 15.3 127 226-352 74-222 (299)
19 TIGR03469 HonB hopene-associat 92.7 3.5 7.5E-05 42.3 14.9 161 176-343 70-248 (384)
20 PF13506 Glyco_transf_21: Glyc 92.0 0.44 9.4E-06 43.7 6.6 120 220-347 16-144 (175)
21 PRK11204 N-glycosyltransferase 92.0 8.3 0.00018 39.5 16.7 192 138-352 54-257 (420)
22 cd04196 GT_2_like_d Subfamily 91.9 6.3 0.00014 35.3 14.1 177 155-349 11-197 (214)
23 cd06421 CESA_CelA_like CESA_Ce 91.3 6.1 0.00013 36.2 13.6 122 227-354 76-210 (234)
24 PF00535 Glycos_transf_2: Glyc 89.6 5 0.00011 33.8 10.6 132 176-318 27-168 (169)
25 cd06433 GT_2_WfgS_like WfgS an 89.1 15 0.00032 32.2 14.7 112 225-343 65-180 (202)
26 cd06439 CESA_like_1 CESA_like_ 88.5 9.7 0.00021 35.5 12.7 121 226-352 100-226 (251)
27 cd06532 Glyco_transf_25 Glycos 87.8 7.6 0.00016 33.5 10.5 117 142-324 2-119 (128)
28 cd04187 DPM1_like_bac Bacteria 87.6 4.8 0.0001 35.6 9.5 135 175-320 28-164 (181)
29 cd04186 GT_2_like_c Subfamily 86.8 18 0.00039 30.6 14.5 87 230-348 69-158 (166)
30 cd06423 CESA_like CESA_like is 86.5 11 0.00024 31.5 10.9 95 225-319 68-170 (180)
31 cd04195 GT2_AmsE_like GT2_AmsE 85.4 14 0.00031 32.9 11.5 116 226-350 71-196 (201)
32 cd04184 GT2_RfbC_Mx_like Myxoc 83.4 32 0.0007 30.6 16.6 111 226-345 74-189 (202)
33 PF13632 Glyco_trans_2_3: Glyc 83.2 3.7 8E-05 36.9 6.6 117 238-358 1-127 (193)
34 PRK14583 hmsR N-glycosyltransf 82.8 65 0.0014 33.6 17.9 191 138-350 75-276 (444)
35 cd04185 GT_2_like_b Subfamily 82.7 35 0.00076 30.5 13.6 100 224-354 69-172 (202)
36 cd06435 CESA_NdvC_like NdvC_li 80.6 46 0.00099 30.6 13.2 118 226-349 73-203 (236)
37 cd06427 CESA_like_2 CESA_like_ 79.7 38 0.00083 31.6 12.5 121 226-349 75-206 (241)
38 cd06420 GT2_Chondriotin_Pol_N 79.2 12 0.00026 32.7 8.4 97 226-343 70-166 (182)
39 cd02526 GT2_RfbF_like RfbF is 78.2 50 0.0011 30.2 12.6 128 225-354 66-203 (237)
40 TIGR03111 glyc2_xrt_Gpos1 puta 78.1 40 0.00087 35.2 13.2 129 225-356 121-268 (439)
41 cd04179 DPM_DPG-synthase_like 77.9 15 0.00033 32.1 8.7 136 176-319 28-167 (185)
42 PRK10714 undecaprenyl phosphat 76.3 48 0.001 33.3 12.6 135 175-320 37-174 (325)
43 cd06437 CESA_CaSu_A2 Cellulose 75.8 66 0.0014 29.6 14.2 121 226-352 78-210 (232)
44 PF04646 DUF604: Protein of un 75.7 4.4 9.5E-05 39.7 4.8 52 304-355 12-67 (255)
45 cd06442 DPM1_like DPM1_like re 72.6 62 0.0013 29.2 11.5 92 227-319 70-167 (224)
46 COG1215 Glycosyltransferases, 72.0 81 0.0018 32.0 13.4 164 177-350 85-260 (439)
47 cd02522 GT_2_like_a GT_2_like_ 67.6 43 0.00094 30.2 9.3 107 227-345 64-175 (221)
48 COG1216 Predicted glycosyltran 66.4 41 0.0009 33.0 9.5 137 204-343 55-206 (305)
49 cd02514 GT13_GLCNAC-TI GT13_GL 65.1 26 0.00057 35.7 7.9 83 224-318 86-174 (334)
50 TIGR03030 CelA cellulose synth 64.4 1.1E+02 0.0024 34.3 13.3 134 220-357 214-360 (713)
51 PF10111 Glyco_tranf_2_2: Glyc 62.9 1.5E+02 0.0033 28.7 15.1 164 174-345 32-210 (281)
52 cd04191 Glucan_BSP_ModH Glucan 62.9 1.4E+02 0.003 28.9 12.2 119 218-344 77-218 (254)
53 cd06434 GT2_HAS Hyaluronan syn 61.4 61 0.0013 29.6 9.1 153 176-345 28-201 (235)
54 PLN02726 dolichyl-phosphate be 60.7 1.5E+02 0.0032 27.8 16.9 156 176-348 40-211 (243)
55 cd04190 Chitin_synth_C C-termi 58.5 17 0.00036 34.5 4.9 114 233-346 71-211 (244)
56 TIGR01556 rhamnosyltran L-rham 51.1 62 0.0013 31.0 7.6 35 226-261 65-99 (281)
57 cd04188 DPG_synthase DPG_synth 50.3 1.6E+02 0.0036 26.4 10.0 88 175-270 29-118 (211)
58 PHA01631 hypothetical protein 49.7 44 0.00096 30.9 5.8 92 204-321 39-133 (176)
59 COG4092 Predicted glycosyltran 48.7 73 0.0016 31.9 7.5 82 172-258 34-117 (346)
60 KOG2547 Ceramide glucosyltrans 46.4 18 0.00039 37.5 3.1 27 235-261 170-196 (431)
61 cd00761 Glyco_tranf_GTA_type G 46.2 1.5E+02 0.0033 23.7 13.6 34 226-259 68-101 (156)
62 PF03071 GNT-I: GNT-I family; 43.7 3.5E+02 0.0076 28.8 12.2 84 226-321 178-272 (434)
63 PF04508 Pox_A_type_inc: Viral 43.0 30 0.00066 21.5 2.5 19 93-111 3-21 (23)
64 PRK10018 putative glycosyl tra 38.9 3.9E+02 0.0084 26.2 12.4 35 226-260 76-110 (279)
65 cd06913 beta3GnTL1_like Beta 1 37.3 3.1E+02 0.0068 24.7 11.0 44 227-270 76-119 (219)
66 cd06438 EpsO_like EpsO protein 34.9 3.2E+02 0.0068 24.0 9.9 89 225-317 70-169 (183)
67 PRK05454 glucosyltransferase M 34.6 5E+02 0.011 29.3 12.3 199 135-349 121-350 (691)
68 PRK14716 bacteriophage N4 adso 29.9 7.4E+02 0.016 26.8 14.7 110 235-349 158-283 (504)
69 PF03452 Anp1: Anp1; InterPro 28.3 4.7E+02 0.01 26.0 9.6 87 174-261 54-168 (269)
70 PF03742 PetN: PetN ; InterPr 24.0 84 0.0018 20.7 2.3 23 15-37 4-26 (29)
71 PLN03181 glycosyltransferase; 23.6 5.5E+02 0.012 27.4 9.4 92 154-248 108-211 (453)
72 PLN03182 xyloglucan 6-xylosylt 23.2 4.1E+02 0.0088 28.2 8.4 94 154-248 105-210 (429)
73 PF06072 Herpes_US9: Alphaherp 22.8 80 0.0017 24.3 2.4 17 20-36 42-58 (60)
74 PF13704 Glyco_tranf_2_4: Glyc 21.7 3.5E+02 0.0076 21.3 6.4 72 174-252 16-88 (97)
75 PF04666 Glyco_transf_54: N-Ac 20.5 6.1E+02 0.013 25.5 8.9 22 235-256 169-190 (297)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.7e-112 Score=855.93 Aligned_cols=404 Identities=90% Similarity=1.433 Sum_probs=376.6
Q ss_pred CCccccc-ccCCCCccchhHHHHHHHHHHHhHHHhcccCCCCccCccccchhhhhHhHhhhccCCCCccc---ccchhcc
Q 015407 1 MSLKSKG-ELTSRSVVSQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTTAMEAEKLKLVSEGCNPRL---LQQKVVR 76 (407)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 76 (407)
||.|+|| ++.+|+.||+||+++||++|||+|++||+|||..||..+..+++++.++++++++++|+.++ +++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~ 77 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEV---K 77 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhcccccccccccccc---c
Confidence 8999999 77899999999999999999999999999999999999988888899999999999999776 332 4
Q ss_pred CCcchhhhchHhhHHHHHhhhhhHHHHHHHHHHHHhhhhcccCCCCCcccccccCCCCCCCeeEEEEEECCCCCHHHHHH
Q 015407 77 HDSKDIFGEVFKTHNAIQTLDKTISNLEMELAAARAAQESILSGSPLSEDLKKTESSGKRRYLMVVGINTAFSSRKRRDS 156 (407)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llI~V~Sa~~~~~rR~a 156 (407)
+++++||++|++||+|||+|+|+|+.||||||+|++.|..+.++.|.++.....+...+++++|||+|+|+|+|++||++
T Consensus 78 ~~~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~A 157 (408)
T PLN03193 78 RDSKDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDS 157 (408)
T ss_pred cchhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHH
Confidence 68999999999999999999999999999999999977666776666533333345567889999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCc
Q 015407 157 VRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDA 236 (407)
Q Consensus 157 IR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a 236 (407)
||+|||++++.+.+++...+++++||||++.++++.++++|++|+++|+|||++||+|+|.|||+||+++|+||.+++++
T Consensus 158 IR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dA 237 (408)
T PLN03193 158 VRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDA 237 (408)
T ss_pred HHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCC
Confidence 99999998877777777899999999999987677899999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHH
Q 015407 237 DFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAA 316 (407)
Q Consensus 237 ~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~ 316 (407)
+||||+|||+|||+++|+.+|..++.++++|+|||+++|++.+++.|||+|++|+||++++.|||||+|+|||||+|+|+
T Consensus 238 kF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~ 317 (408)
T PLN03193 238 DFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLAS 317 (408)
T ss_pred eEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHH
Confidence 99999999999999999999998877789999999999887778889999999999988999999999999999999999
Q ss_pred HHHHhccccCCCCCchHHHHHHHhcCCCeeecCCCcccCCCCCcccccccCCcccccccccccccCCCHHHHHHHHHHcc
Q 015407 317 YISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWTCSGICRSADRIKEVHRRCG 396 (407)
Q Consensus 317 ~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~id~~~f~~~~~~~cewk~~~~~~c~~~~~~~csgic~s~~~m~~vH~~~~ 396 (407)
+|+.+...++.|++|||++|+||++|+|+|+||++|||+++|+|+||+++|++|+++|||+|||+|+|++||+++|++|+
T Consensus 318 ~I~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~ 397 (408)
T PLN03193 318 YISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCG 397 (408)
T ss_pred HHHhChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccC
Q 015407 397 EGENALWSATF 407 (407)
Q Consensus 397 ~~~~~~w~~~~ 407 (407)
|+++|+|+++|
T Consensus 398 ~~~~~~~~~~~ 408 (408)
T PLN03193 398 EGENALWSATF 408 (408)
T ss_pred CCcccceeecC
Confidence 99999999987
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-75 Score=545.77 Aligned_cols=265 Identities=68% Similarity=1.150 Sum_probs=257.0
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecC-CC
Q 015407 135 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-HV 213 (407)
Q Consensus 135 ~~~~~llI~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld-~~ 213 (407)
+++++++|+|.|++++.+||+++|+||++.++.+++++.+.+|.++||||+ .+.+++++++|++|+++|+|+|++| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999999999999999999999999 4567899999999999999999999 99
Q ss_pred ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccCcccccC
Q 015407 214 EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFG 293 (407)
Q Consensus 214 DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fg 293 (407)
|+|.+|+.||+++|.+|..+|+++||+|+|||+|||++.|...|++++.+|++|||||++|||+.+|++|||||+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeeecCCCcccCCCCCcccccccCCccccc
Q 015407 294 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVAS 373 (407)
Q Consensus 294 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~id~~~f~~~~~~~cewk~~~~~~c~~~ 373 (407)
|.++ |+||+.|++|+||++|+.+|++|+..++.|.+|||++|.||+||+|+|+||+++||+++ |++++++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 9777 99999999999999999999999999999999999999999999999999999999874 78899999999
Q ss_pred ccccccccCCCHHHHHHHHHHcccCccccccccC
Q 015407 374 FDWTCSGICRSADRIKEVHRRCGEGENALWSATF 407 (407)
Q Consensus 374 ~~~~csgic~s~~~m~~vH~~~~~~~~~~w~~~~ 407 (407)
|+|+|||+|+++.||.++|++|+++..+.|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999998765
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.2e-50 Score=425.69 Aligned_cols=243 Identities=23% Similarity=0.346 Sum_probs=208.0
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCC
Q 015407 134 GKRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHV 213 (407)
Q Consensus 134 ~~~~~~llI~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~ 213 (407)
++++++|||+|+|+|+|++||+|||+|||+.. ...+.+++++|++|.+.+ +.++.+|++|+++|+||||+||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~-----~~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYD-----AVRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhcccc-----ccCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEEeee
Confidence 35679999999999999999999999999863 123456999999999863 57889999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeecc-CcccccCCCccccCccccc
Q 015407 214 EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKS-GPVLNQKGVRYHEPEYWKF 292 (407)
Q Consensus 214 DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~-gpv~r~~~~Kw~~p~~w~f 292 (407)
|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++.. ..|+|++.+|||+|.+.|
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey- 532 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW- 532 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC-
Confidence 999999999999999999999999999999999999999999998776667899999864 578899999999997666
Q ss_pred CCCCCCCCCCCCCCeeeecHHHHHHHHHhc--cccCCCCCchHHHHHHHh-----cCCCeeecCCCcccCCCCCcccccc
Q 015407 293 GEAGNRYFRHATGQLYAISKDLAAYISINQ--HVLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCEWKAQ 365 (407)
Q Consensus 293 gd~~~~Yp~y~~G~gYvLS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~l~V~~id~~~f~~~~~~~cewk~~ 365 (407)
|.+.|||||+|+|||||+|+|++|+.+. ..++.|++||||+|+|+. |+.+++.++.+||+.. |.
T Consensus 533 --p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~---C~---- 603 (636)
T PLN03133 533 --PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEG---CK---- 603 (636)
T ss_pred --CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCc---CC----
Confidence 7889999999999999999999998764 578999999999999985 6778888988997532 32
Q ss_pred cCCcccccccccccccCCCHHHHHHHHHHcccCcccc
Q 015407 366 AGNICVASFDWTCSGICRSADRIKEVHRRCGEGENAL 402 (407)
Q Consensus 366 ~~~~c~~~~~~~csgic~s~~~m~~vH~~~~~~~~~~ 402 (407)
.+.++++ -.+|+.|..+|+...++..+-
T Consensus 604 ~~~i~~H---------~~sP~eM~~lW~~l~~~~~~~ 631 (636)
T PLN03133 604 DGYVVAH---------YQSPREMLCLWQKLQEGKRAT 631 (636)
T ss_pred CCeEEEe---------cCCHHHHHHHHHHHhccCCCC
Confidence 1123322 246899999999987765443
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-48 Score=391.19 Aligned_cols=240 Identities=22% Similarity=0.300 Sum_probs=206.2
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccc
Q 015407 137 RYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 216 (407)
Q Consensus 137 ~~~llI~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY 216 (407)
.++++|+|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .++..|.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999852 4577899999999987544 6689999999999999999999999
Q ss_pred cchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHhhc-CCCCCeeEEeec-cCcccccCCCccccCcccccC
Q 015407 217 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMK-SGPVLNQKGVRYHEPEYWKFG 293 (407)
Q Consensus 217 ~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVni~~L~~~L~~~-~~~~~lYiG~~~-~gpv~r~~~~Kw~~p~~w~fg 293 (407)
.|||+||++++.|+.. |++++|++|+|||+|||+++|+.+|..+ .+.+.+|.|.+. ..+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999997 8999999999999999999999999999 788899999975 4689999999999998777
Q ss_pred CCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcC-CCeeecCCCcccCCC--CCcccccccCCcc
Q 015407 294 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL-DVEHIDDRRLCCGTP--PDCEWKAQAGNIC 370 (407)
Q Consensus 294 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l-~V~~id~~~f~~~~~--~~cewk~~~~~~c 370 (407)
+...|||||+|+||++|+++|+.|+.++..++.+++|||++|+|++.. |++++++..|..... ..|.|+. -
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~---~-- 319 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRD---L-- 319 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccc---e--
Confidence 778999999999999999999999999999999999999999999876 999998877544321 2343321 0
Q ss_pred cccccccccccCCCHHHHHHHHHHccc
Q 015407 371 VASFDWTCSGICRSADRIKEVHRRCGE 397 (407)
Q Consensus 371 ~~~~~~~csgic~s~~~m~~vH~~~~~ 397 (407)
+.| .-.++..|..+++.+..
T Consensus 320 ---~~~----H~~~p~e~~~~w~~~~~ 339 (349)
T KOG2287|consen 320 ---LAV----HRLSPNEMIYLWKKLKD 339 (349)
T ss_pred ---EEE----ecCCHHHHHHHHHHhhc
Confidence 001 11226777788877665
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=6.5e-47 Score=350.76 Aligned_cols=191 Identities=29% Similarity=0.378 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHH
Q 015407 152 KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAV 231 (407)
Q Consensus 152 ~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~ 231 (407)
+||++||+||++... ....+++++||+|.+++++..++..|.+|+++|+|||++||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999852 235899999999999865667888899999999999999999999999999999999999
Q ss_pred h-cCCcceEEEeCCceEecHHHHHHHHhhc--CCC-CCeeEEeeccCcccccCCCccccCcccccCCCCCCCCCCCCCCe
Q 015407 232 S-LWDADFYVKVDDDVHVNIATLGQTLVRH--RSK-PRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQL 307 (407)
Q Consensus 232 ~-~~~a~f~lKvDDDvfVni~~L~~~L~~~--~~~-~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~g 307 (407)
+ |++++|++|+|||+|||+++|.++|... ... ..+|.+++..++|+|++.+|||+|+..| +.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 7 6679999999999999999999999987 233 3455555677889999999999998777 7789999999999
Q ss_pred eeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeeecCC
Q 015407 308 YAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDR 350 (407)
Q Consensus 308 YvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~id~~ 350 (407)
|+||+++|+.|+.++..++.+++|||++|+|+.+++|+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999874
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.98 E-value=1.1e-31 Score=267.79 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=179.0
Q ss_pred CCCCCeeEEEEEECCCCC--HHHHHHHHHHHHhhhhhh-hhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeee
Q 015407 133 SGKRRYLMVVGINTAFSS--RKRRDSVRATWMLQGEKR-KRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMR 209 (407)
Q Consensus 133 ~~~~~~~llI~V~Sa~~~--~~rR~aIR~TW~~~~~~l-~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ 209 (407)
...+..++++||.|..++ +.||++.|+||.+...-. +...-...+.++|++|.+++.+-..+.+|.+|+++|+|||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 456789999999999998 899999999999987532 22222445778999999998777999999999999999999
Q ss_pred cCC------------------CccccchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEe
Q 015407 210 LDH------------------VEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC 270 (407)
Q Consensus 210 ld~------------------~DsY~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~ 270 (407)
+|| .|++.|+|+||+++|+||.+ |++++|++|+|||+|||++++++.|... ++..+|+|.
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 999 77778899999999999997 7799999999999999999999999655 456699998
Q ss_pred eccC-cccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccc--c---------------CCCCCch
Q 015407 271 MKSG-PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHV--L---------------HKYANED 332 (407)
Q Consensus 271 ~~~g-pv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~--l---------------~~~~~ED 332 (407)
+... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+.+||
T Consensus 234 v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ED 295 (382)
T PTZ00210 234 YNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYED 295 (382)
T ss_pred eCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchH
Confidence 6431 111 12479999999999999999999986432 2 2358999
Q ss_pred HHHHHHH-hcCCCeee--cCCCcccCCCCCcccccccCCcccc--cccccccccCCCHHHHHHHHHHcccCcc
Q 015407 333 VSLGSWF-IGLDVEHI--DDRRLCCGTPPDCEWKAQAGNICVA--SFDWTCSGICRSADRIKEVHRRCGEGEN 400 (407)
Q Consensus 333 V~vG~~l-~~l~V~~i--d~~~f~~~~~~~cewk~~~~~~c~~--~~~~~csgic~s~~~m~~vH~~~~~~~~ 400 (407)
+.+|.|+ .++.-+.. -....|.+... +. ..|.+ .++.-|-.-|+. +.=..+|.+.+....
T Consensus 296 iMvG~vLr~~~k~~~l~~V~~~~c~Fhd~------~~-~~~~~~v~~~sVvvHhike-~dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 296 VMVGMILREKVVYRNLISVEMGRCHFHNA------GK-FGVRKSVRNMSVVIHHIQE-ADYEMLMDYFPEGVI 360 (382)
T ss_pred HHHHHHHHHhcCcCceeeeccccccceec------CC-CCCccccccceEEEEecCH-HHHHHHHHHhcCCCC
Confidence 9999999 44443321 12344444311 11 11211 122234445554 466677777777543
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=1.5e-28 Score=203.81 Aligned_cols=93 Identities=66% Similarity=1.079 Sum_probs=84.4
Q ss_pred chhHHHHHHHHHHHhHHHhcccCCCCccCccccchhh-hhHhHhhhccCCCCcccccchhccCCcchhhhchHhhHHHHH
Q 015407 16 SQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTTA-MEAEKLKLVSEGCNPRLLQQKVVRHDSKDIFGEVFKTHNAIQ 94 (407)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (407)
|+||+++||++|||+|+|||||||..||+.+....+. ..++++++++++|++++. ++.+++++|++|++||+|||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~----~~~~~~di~~eV~kTh~aIq 76 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKL----KESDQRDIMGEVSKTHEAIQ 76 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhcccccccccccccccccccc----ccCCccchhHHHHHHHHHHH
Confidence 6799999999999999999999999999888775444 678999999999998772 35789999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 015407 95 TLDKTISNLEMELAAARA 112 (407)
Q Consensus 95 ~~~~~i~~le~~l~~~~~ 112 (407)
+|||+||+||||||+||+
T Consensus 77 ~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 77 SLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999996
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.76 E-value=4.9e-18 Score=164.45 Aligned_cols=192 Identities=18% Similarity=0.228 Sum_probs=99.1
Q ss_pred eeEEEEEECCCCCHH-HHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccc
Q 015407 138 YLMVVGINTAFSSRK-RRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 216 (407)
Q Consensus 138 ~~llI~V~Sa~~~~~-rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY 216 (407)
-.|+|+|+|++++.+ |-.+|++||++.+.. + .|+....+ +..|..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDAE------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCcc------ccccccc--cccccccCCCcchh
Confidence 468999999998655 569999999998742 1 34322211 2333333 23345555555544
Q ss_pred cchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeecc-CcccccCCCccccCcccccCC
Q 015407 217 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKS-GPVLNQKGVRYHEPEYWKFGE 294 (407)
Q Consensus 217 ~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~-gpv~r~~~~Kw~~p~~w~fgd 294 (407)
...+++.++.+.+... ..+++|++++|||+||++++|..+|..+++..++|+|+... .+...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4444444444444322 35889999999999999999999999999999999998642 22210000000000
Q ss_pred CCCCCCCCC-CCCeeeecHHHHHHHHHh---ccccCCC----CCchHHHHHHHhc-CCCeeecCCCcccCC
Q 015407 295 AGNRYFRHA-TGQLYAISKDLAAYISIN---QHVLHKY----ANEDVSLGSWFIG-LDVEHIDDRRLCCGT 356 (407)
Q Consensus 295 ~~~~Yp~y~-~G~gYvLS~dla~~I~~~---~~~l~~~----~~EDV~vG~~l~~-l~V~~id~~~f~~~~ 356 (407)
...-..|+ +|+||+||+.++++|... ....... ..||+.+|.|+.. |||..++.+.|+...
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~ 209 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHL 209 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SS
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccC
Confidence 11222344 689999999999999542 2222222 4899999999988 999999998887643
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.2e-15 Score=152.86 Aligned_cols=169 Identities=23% Similarity=0.313 Sum_probs=130.8
Q ss_pred CCCCeeEEEEEECCCCCHHHH-HHHHHHHHhhhhhhhhcccCCcEEEEEEe---ecCCCCCCchHHHHHHHHhhcCCeee
Q 015407 134 GKRRYLMVVGINTAFSSRKRR-DSVRATWMLQGEKRKRLEEEKGIIMRFVI---GHSATSGGILDRAIEAEDRKHGDFMR 209 (407)
Q Consensus 134 ~~~~~~llI~V~Sa~~~~~rR-~aIR~TW~~~~~~l~~l~~~~~v~v~Fvv---G~s~~~~~~~~~~L~~E~~~~~DIL~ 209 (407)
..++..+++.|.|.+.+...| +++-+||++.++. ..|+- +... ..+. .|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~-~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFP-TVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCc-eee
Confidence 467789999999999877655 7999999999852 23443 3221 1222 337
Q ss_pred cCCCccccchhHHHHHHHHHHHh--cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccC
Q 015407 210 LDHVEGYLELSAKTKIYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP 287 (407)
Q Consensus 210 ld~~DsY~nLt~Kt~~~~~wa~~--~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p 287 (407)
.+..|+|+++..||..+|+++.. ..+++|++|+|||||+.++||..+|..+++.+.+|+|+... -|.
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~~- 209 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SYF- 209 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------ccc-
Confidence 88999999999999999999985 35999999999999999999999999999999999998521 011
Q ss_pred cccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhc-----cccCCCC--CchHHHHHHHhcCCCeeecC
Q 015407 288 EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ-----HVLHKYA--NEDVSLGSWFIGLDVEHIDD 349 (407)
Q Consensus 288 ~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~-----~~l~~~~--~EDV~vG~~l~~l~V~~id~ 349 (407)
.+.| ..+|+||++|+++.+.+++.. .....+. .||+-+|.||+.+||...|.
T Consensus 210 --------~~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 210 --------QNGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred --------cccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 1122 137999999999998887642 2333444 99999999999999987765
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.05 E-value=3e-09 Score=111.04 Aligned_cols=183 Identities=19% Similarity=0.161 Sum_probs=113.6
Q ss_pred CeeEEEEEECCCCCH-HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCcc
Q 015407 137 RYLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEG 215 (407)
Q Consensus 137 ~~~llI~V~Sa~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~Ds 215 (407)
--.++++|.+..+.. +|+..|+.+|.+.. -. -++|+.....+. ..+.. --- +.+. .|+
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~--------~r--g~v~ld~~~~~~--~~~~~-------~P~-i~is-~d~ 179 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQ--------MR--GHVWLEEQVSPE--EGDDS-------LPP-IMVS-EDT 179 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCccc--------ce--eEEEecccCCCC--CCcCC-------CCC-EEeC-CCc
Confidence 357889998888766 56689999998752 11 234544332110 00000 000 1110 111
Q ss_pred ----cc---chhHHHHH--HHHHHHh--cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCcc
Q 015407 216 ----YL---ELSAKTKI--YFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY 284 (407)
Q Consensus 216 ----Y~---nLt~Kt~~--~~~wa~~--~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw 284 (407)
|. +......+ +...+.. .++++||+++|||+|+.+++|+..|..+++....|+|.....
T Consensus 180 s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~---------- 249 (537)
T PLN03153 180 SRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES---------- 249 (537)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc----------
Confidence 22 22222111 2333332 589999999999999999999999999999999999975210
Q ss_pred ccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhcc-ccCCC---CCchHHHHHHHhcCCCeeecCCCcccCC
Q 015407 285 HEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH-VLHKY---ANEDVSLGSWFIGLDVEHIDDRRLCCGT 356 (407)
Q Consensus 285 ~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~-~l~~~---~~EDV~vG~~l~~l~V~~id~~~f~~~~ 356 (407)
....-+| .|--.-+|+||+||+.+++.|..... ....| .-+|.-+|.|+..+||...++++|+...
T Consensus 250 -~~qn~~f-----~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D 319 (537)
T PLN03153 250 -HSANSYF-----SHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWD 319 (537)
T ss_pred -ccccccc-----ccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccc
Confidence 0000011 11111389999999999999987532 22222 4588899999999999998888887754
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0012 Score=69.09 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=118.0
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCcccc
Q 015407 138 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 217 (407)
Q Consensus 138 ~~llI~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~ 217 (407)
-+|+++|+|. ..---+|-+|=+..-. ++-|+++.+.-. .|.-++..+--|.
T Consensus 26 Erl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d 76 (681)
T KOG3708|consen 26 ERLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYD 76 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCccc
Confidence 3456666662 1444566666665421 456777765421 1222233233333
Q ss_pred chhHHHH-HHHHHHHh--cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccCcccccCC
Q 015407 218 ELSAKTK-IYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGE 294 (407)
Q Consensus 218 nLt~Kt~-~~~~wa~~--~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd 294 (407)
.-..|+. +.+++..+ .-++||++-+-||+|||...|+.++.......++|+|.-- + . |
T Consensus 77 ~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~-------------~----~-g- 137 (681)
T KOG3708|consen 77 LRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA-------------E----D-G- 137 (681)
T ss_pred cCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh-------------h----C-c-
Confidence 3334443 34555554 3489999999999999999999999988888899999310 0 0 0
Q ss_pred CCCCCCCCC-CCCeeeecHHHHHHHHHhccccC---CCCCchHHHHHHHh---cCCCeeecC--CCcccC--CCC----C
Q 015407 295 AGNRYFRHA-TGQLYAISKDLAAYISINQHVLH---KYANEDVSLGSWFI---GLDVEHIDD--RRLCCG--TPP----D 359 (407)
Q Consensus 295 ~~~~Yp~y~-~G~gYvLS~dla~~I~~~~~~l~---~~~~EDV~vG~~l~---~l~V~~id~--~~f~~~--~~~----~ 359 (407)
.+ . | .|.||+||+.++..+-.|-.-.. .-.-.|+.+|.|+. +++.++.|. +++... +|. .
T Consensus 138 s~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~ 212 (681)
T KOG3708|consen 138 SG-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSI 212 (681)
T ss_pred cC-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccc
Confidence 11 1 5 48999999999999987643222 22567899999994 566555443 122221 222 4
Q ss_pred cccccccCCccccccccccc--ccCCCHHHHHHHHHHcc
Q 015407 360 CEWKAQAGNICVASFDWTCS--GICRSADRIKEVHRRCG 396 (407)
Q Consensus 360 cewk~~~~~~c~~~~~~~cs--gic~s~~~m~~vH~~~~ 396 (407)
.||++.. .|. +.+ .-..+++.|-.+|++..
T Consensus 213 ~e~~~s~------aFr-~A~tv~pv~~p~d~yrLH~yfs 244 (681)
T KOG3708|consen 213 PEWEGSP------AFR-SALTVHPVLSPADMYRLHKYFS 244 (681)
T ss_pred hhhcCCh------HHh-hhhccCccCCHHHHHHHHHHHH
Confidence 5675211 121 111 12256788988888753
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.63 E-value=0.27 Score=45.19 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=51.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecC-----CCccc
Q 015407 142 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-----HVEGY 216 (407)
Q Consensus 142 I~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld-----~~DsY 216 (407)
|.|.|-+.+.+||+.|.+..... ++.+.|+-+..... ++. ......+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 45667788899999998877643 44566776665421 111 01111121111110 11111
Q ss_pred cchhHHHHHHHHHHHhcCCcceEEEeCCceEecHH
Q 015407 217 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 251 (407)
Q Consensus 217 ~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~ 251 (407)
-.=.+-.+..++-+++. +.+|.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11133445566666643 67999999999999965
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.94 E-value=0.56 Score=43.19 Aligned_cols=114 Identities=13% Similarity=0.012 Sum_probs=56.5
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhc-CCCCCeeEEeecc--CcccccCC-----CccccCcccccCCCCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMKS--GPVLNQKG-----VRYHEPEYWKFGEAGN 297 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~-~~~~~lYiG~~~~--gpv~r~~~-----~Kw~~p~~w~fgd~~~ 297 (407)
.++++.+..+.+|++.+|||+.+.++-|..++... .+.-.+..|.+.. +...-... ..|+... ..+.....
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 44666665679999999999999999988888776 3322333333311 11000000 0111100 01111111
Q ss_pred CCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCe
Q 015407 298 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 345 (407)
Q Consensus 298 ~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~ 345 (407)
..++.|++.++.+++++.+-.-.. ....||..++.-+...|..
T Consensus 156 --~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 156 --VAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred --eeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 134579999999999998853222 4456999999888655544
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.89 E-value=0.76 Score=46.83 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=83.8
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcCC--eeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 253 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~D--IL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L 253 (407)
.+.++|+...+++ .....+++=.+.|.+ +..+. ...-.....|.-...+ +.+..+.+|++.+|+|+.+.++-|
T Consensus 70 ~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 3677777665432 222223322345655 32221 1111223356655444 445568999999999999999999
Q ss_pred HHHHhhcCCCCCe-eEEeeccCcccccCC--------CccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccc
Q 015407 254 GQTLVRHRSKPRV-YIGCMKSGPVLNQKG--------VRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHV 324 (407)
Q Consensus 254 ~~~L~~~~~~~~l-YiG~~~~gpv~r~~~--------~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~ 324 (407)
...+.... .+++ .+++...+.+..... .-++.|.... .... .-+.+|.|+.+++.+++.+.+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~- 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMV-ARAL-GRARFCFGATMALRRATLEAIGGLAA- 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHH-HHhc-cCCccccChhhheeHHHHHHcCChHH-
Confidence 88887763 3332 223321110000000 0011111000 0000 11345789999999999988753222
Q ss_pred cCCCCCchHHHHHHHhcCCCe
Q 015407 325 LHKYANEDVSLGSWFIGLDVE 345 (407)
Q Consensus 325 l~~~~~EDV~vG~~l~~l~V~ 345 (407)
+.....||+.+|.-+...|.+
T Consensus 221 ~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 221 LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hcccchHHHHHHHHHHHcCCe
Confidence 122336999999988655543
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.27 E-value=1.3 Score=40.42 Aligned_cols=167 Identities=16% Similarity=-0.001 Sum_probs=84.0
Q ss_pred EEEEEEeecCCCCCCchHHHHH-HHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015407 177 IIMRFVIGHSATSGGILDRAIE-AEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 255 (407)
Q Consensus 177 v~v~FvvG~s~~~~~~~~~~L~-~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~ 255 (407)
+.++.|-..+.+ .....+. .....+..+..++..+ -.|. -|. ..++++....+.+|++.+|+|..+.++-|..
T Consensus 29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 666666655432 2233343 2222233455555443 1222 222 3455666666899999999999999988888
Q ss_pred HHhhcCCC-CCeeEEeeccCcc---ccc-CCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCC
Q 015407 256 TLVRHRSK-PRVYIGCMKSGPV---LNQ-KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYAN 330 (407)
Q Consensus 256 ~L~~~~~~-~~lYiG~~~~gpv---~r~-~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~ 330 (407)
++...... ..++.|.....+. ... ....+.....-..+.....++..+.|+++++++++.+.+---... .....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-ccccc
Confidence 88755332 2344443221100 000 000000000000000122455567899999999999887433222 22346
Q ss_pred chHHHHHHH--hcC-CCeeecCC
Q 015407 331 EDVSLGSWF--IGL-DVEHIDDR 350 (407)
Q Consensus 331 EDV~vG~~l--~~l-~V~~id~~ 350 (407)
||..++.-+ .+. .+..+.++
T Consensus 182 eD~~~~~~~~~~g~~~~~~~~~~ 204 (229)
T cd04192 182 GDDELLLAKVASKYPKVAYLKNP 204 (229)
T ss_pred CCHHHHHHHHHhCCCCEEEeeCc
Confidence 776665433 455 45555443
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.80 E-value=3.8 Score=37.79 Aligned_cols=160 Identities=12% Similarity=-0.019 Sum_probs=80.4
Q ss_pred CcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015407 175 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 254 (407)
Q Consensus 175 ~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~ 254 (407)
..+.++.|-+.+.+ .....++...+++..+....-.+. ... .+++.+.+....+|++.+|||..+.++-|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 35566666655532 233444444444333433332211 111 346666665689999999999999988888
Q ss_pred HHHhhcCCCC-CeeEEeecc---Ccccc---c-CCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccC
Q 015407 255 QTLVRHRSKP-RVYIGCMKS---GPVLN---Q-KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 326 (407)
Q Consensus 255 ~~L~~~~~~~-~lYiG~~~~---gpv~r---~-~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~ 326 (407)
..+......+ .+..|.... ++... . ....+.....+... ....+-.++.|++.++++++.+.+..... .
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRG-GAVKIGYVDTVHHGAYRREVFEKVGGFDE--S 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccc-cccccccccccccceEEHHHHHHhCCCCc--c
Confidence 8886554323 233344321 11100 0 00000000000000 00010114567888899999887643222 2
Q ss_pred CCCCchHHHHHHHhcCCCee
Q 015407 327 KYANEDVSLGSWFIGLDVEH 346 (407)
Q Consensus 327 ~~~~EDV~vG~~l~~l~V~~ 346 (407)
....||..++.-+...|.+.
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 23579999987665555443
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.68 E-value=4.3 Score=36.81 Aligned_cols=138 Identities=19% Similarity=0.119 Sum_probs=79.2
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcC--CeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHG--DFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 253 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~--DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L 253 (407)
.+.+++|...+.+ .....+++-...|. ++..+...... ....|.. .+..+.+....+|++..|+|+.+.++-|
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 3677787766642 22233443344454 33222211111 1223432 2344555567999999999999998888
Q ss_pred HHHHhhcCCCCCeeEEeeccCcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchH
Q 015407 254 GQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDV 333 (407)
Q Consensus 254 ~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV 333 (407)
..++.... .+.+ |.+.+ .++.|++.++.+++.+.+---.. ...+..||.
T Consensus 105 ~~l~~~~~-~~~~--~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLM-DPGV--GLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHhh-CCCC--CeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 88776542 2221 22110 04678999999999988743321 222347999
Q ss_pred HHHHHHhcCC--CeeecC
Q 015407 334 SLGSWFIGLD--VEHIDD 349 (407)
Q Consensus 334 ~vG~~l~~l~--V~~id~ 349 (407)
.++.-+...| +...++
T Consensus 154 ~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 154 FLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred HHHHHHHHcCCeEEEcch
Confidence 9998886555 444444
No 18
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.83 E-value=4.5 Score=39.47 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=69.2
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEe-ecc--Ccccc--cC------------CCccccC-
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC-MKS--GPVLN--QK------------GVRYHEP- 287 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~-~~~--gpv~r--~~------------~~Kw~~p- 287 (407)
+.+.+.+....+|++..|+|+.+..+-|..++......+...+|. +.. +.-.. .. ...|...
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 344444445789999999999999888877776654333333332 110 00000 00 0011110
Q ss_pred ccc-ccCC-CCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHH--HHHhcCCCeeecCCCc
Q 015407 288 EYW-KFGE-AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLG--SWFIGLDVEHIDDRRL 352 (407)
Q Consensus 288 ~~w-~fgd-~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG--~~l~~l~V~~id~~~f 352 (407)
..+ .... +.....++++|++.++++++...+---...+..+..||+-+. .|..|..+..+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v 222 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRV 222 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEE
Confidence 000 0000 012234567899999999999988544444555567998775 4446666555444333
No 19
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=92.74 E-value=3.5 Score=42.26 Aligned_cols=161 Identities=17% Similarity=0.095 Sum_probs=80.3
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcC---CeeecCCCccccchhHHHH---HHHHHHHh-cCCcceEEEeCCceEe
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHG---DFMRLDHVEGYLELSAKTK---IYFATAVS-LWDADFYVKVDDDVHV 248 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~---DIL~ld~~DsY~nLt~Kt~---~~~~wa~~-~~~a~f~lKvDDDvfV 248 (407)
.+.+++|-..|.+ + ....+++-.+++. .+..+...+.-.+-.-|.. .+++.|.. ..+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 4677777766643 1 2222222122333 3444432221122234432 24444432 2348999999999999
Q ss_pred cHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCcccc-----------CcccccCCCCCCCCCCCCCCeeeecHHHHHH
Q 015407 249 NIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE-----------PEYWKFGEAGNRYFRHATGQLYAISKDLAAY 317 (407)
Q Consensus 249 ni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~-----------p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~ 317 (407)
.++.|.+.++.....+...++.+..... .....+... |-.|. .+ .......+.|++.++++++.+.
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~~ 223 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC-ESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALER 223 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC-CCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHHH
Confidence 9988888887654322222222210000 000000000 10111 01 1122344679999999999988
Q ss_pred HHHhccccCCCCCchHHHHHHHhcCC
Q 015407 318 ISINQHVLHKYANEDVSLGSWFIGLD 343 (407)
Q Consensus 318 I~~~~~~l~~~~~EDV~vG~~l~~l~ 343 (407)
+---..... ...||+.++.-+...|
T Consensus 224 vGGf~~~~~-~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 224 IGGIAAIRG-ALIDDCTLAAAVKRSG 248 (384)
T ss_pred cCCHHHHhh-CcccHHHHHHHHHHcC
Confidence 733222112 2479999998886543
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.05 E-value=0.44 Score=43.69 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCcc--cc-------Cccc
Q 015407 220 SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY--HE-------PEYW 290 (407)
Q Consensus 220 t~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw--~~-------p~~w 290 (407)
..|+-..........+.++++..|+|+.|+++-|.+++.......--.+.++..+ ....+-| .+ +.-+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRG---VPARGFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccc---cCCcCHHHHHHHHHHhHHHHHH
Confidence 3555554443332368999999999999999999888876643111122222111 0011111 01 1111
Q ss_pred ccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCeee
Q 015407 291 KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHI 347 (407)
Q Consensus 291 ~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~~i 347 (407)
. .-...+++.|+.+++.+++++.+--- ..+..+--||..+|..+...|.+.+
T Consensus 93 ~----a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 93 Q----ALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred H----HhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 1 01246779999999999999876321 2234467999999999987776654
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.96 E-value=8.3 Score=39.52 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=98.3
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCcccc
Q 015407 138 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 217 (407)
Q Consensus 138 ~~llI~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~ 217 (407)
+.+-|+|.+.-.. +.|+++-.+-.. . ......++.|-..+. +...+.+++..+++..+..++..+
T Consensus 54 p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~~--- 118 (420)
T PRK11204 54 PGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLAE--- 118 (420)
T ss_pred CCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcCC---
Confidence 4566666653322 446665544321 1 112344444433332 233344544455566565555333
Q ss_pred chhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccC----ccc---
Q 015407 218 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EYW--- 290 (407)
Q Consensus 218 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p----~~w--- 290 (407)
|.. |. ..++.+.+..+.+|++..|+|..+..+.|...+......+++ |.+...+...+.. .+... ++.
T Consensus 119 n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~~~~ 193 (420)
T PRK11204 119 NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFSSII 193 (420)
T ss_pred CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHHHhh
Confidence 222 32 345666666689999999999999999998888776433432 3322211111111 01000 000
Q ss_pred ---ccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeecCCCc
Q 015407 291 ---KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRL 352 (407)
Q Consensus 291 ---~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id~~~f 352 (407)
+........+...+|.+.++.++++..+--- -+....||+-++.-+. |..+...++..-
T Consensus 194 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~---~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~ 257 (420)
T PRK11204 194 GLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW---STDMITEDIDISWKLQLRGWDIRYEPRALC 257 (420)
T ss_pred hHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC---CCCcccchHHHHHHHHHcCCeEEeccccEE
Confidence 0000000112235788899999998876321 1223579999988775 444555555433
No 22
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.93 E-value=6.3 Score=35.32 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=88.7
Q ss_pred HHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcC-CeeecCCCccccchhHHHHHHHHHHHhc
Q 015407 155 DSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVSL 233 (407)
Q Consensus 155 ~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~-DIL~ld~~DsY~nLt~Kt~~~~~wa~~~ 233 (407)
+.|.++.-+... . ....+.+++|-..+.+ .....+++-..++. .+.......+. ... ..+..+...
T Consensus 11 ~~l~~~l~sl~~----q-~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILA----Q-TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHh----C-cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHHh
Confidence 567777766531 1 1225677777655432 22233333334443 33333333222 122 223334455
Q ss_pred CCcceEEEeCCceEecHHHHHHHHhh-cC-CCCCeeEEeec----cCcccccCC--CccccCcccccCCCCCCCCCCCCC
Q 015407 234 WDADFYVKVDDDVHVNIATLGQTLVR-HR-SKPRVYIGCMK----SGPVLNQKG--VRYHEPEYWKFGEAGNRYFRHATG 305 (407)
Q Consensus 234 ~~a~f~lKvDDDvfVni~~L~~~L~~-~~-~~~~lYiG~~~----~gpv~r~~~--~Kw~~p~~w~fgd~~~~Yp~y~~G 305 (407)
...+|++..|+|..+.++.|..++.. .. +...++.|.+. .+.+..... .....+..-. ..........|
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 154 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTG 154 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCC
Confidence 68999999999999998888888876 22 22233334321 111111100 0000000000 00012234578
Q ss_pred CeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcC-CCeeecC
Q 015407 306 QLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL-DVEHIDD 349 (407)
Q Consensus 306 ~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l-~V~~id~ 349 (407)
++.++.+++++.+....... ...||.++...+... .+..++.
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 99999999998875433322 467888877666543 3444443
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.34 E-value=6.1 Score=36.16 Aligned_cols=122 Identities=12% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCee-E-Eeec--c-Ccc---cccCC--CccccCc-ccccCCC
Q 015407 227 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-I-GCMK--S-GPV---LNQKG--VRYHEPE-YWKFGEA 295 (407)
Q Consensus 227 ~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lY-i-G~~~--~-gpv---~r~~~--~Kw~~p~-~w~fgd~ 295 (407)
+..+.+..+.+|++.+|+|+++.++.|..++......+++. + |... . ... .+... ...+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 44555555899999999999999998888887664334321 2 2111 1 000 00000 0000000 000 0
Q ss_pred CCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeecCCCccc
Q 015407 296 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHIDDRRLCC 354 (407)
Q Consensus 296 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~V~~id~~~f~~ 354 (407)
......++.|++.++++++++.+---. ..+..||..++.-+... .+..+++.....
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~ 210 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAG 210 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccccc
Confidence 011244578999999999998864321 23458999999888554 455556554433
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.56 E-value=5 Score=33.83 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=64.3
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 255 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~ 255 (407)
.+.+++|-..+. +.....+.+-.+....+..+...+.. .+. ..+..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-ccc----ccccccccccceeEEEEeCCCceEcHHHHHH
Confidence 456666655442 23334443333324455555444433 222 3334444445667999999999999887777
Q ss_pred HHhhcCC-CCCeeEEeec-c-Cc---ccccCCC-ccccC---cccccCCCCCCCCCCCCCCeeeecHHHHHHH
Q 015407 256 TLVRHRS-KPRVYIGCMK-S-GP---VLNQKGV-RYHEP---EYWKFGEAGNRYFRHATGQLYAISKDLAAYI 318 (407)
Q Consensus 256 ~L~~~~~-~~~lYiG~~~-~-gp---v~r~~~~-Kw~~p---~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I 318 (407)
++..... ...+.+|... . .. ....... .+... .... ....-.+++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNN---IRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHT---THSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHh---hhcCCcccccccEEEEEHHHHHhh
Confidence 6665543 3345555532 1 11 1100000 01111 1111 112334457888999999988764
No 25
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.12 E-value=15 Score=32.23 Aligned_cols=112 Identities=13% Similarity=-0.051 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcC--CCCCeeEEeec--cCcccccCCCccccCcccccCCCCCCCC
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK--SGPVLNQKGVRYHEPEYWKFGEAGNRYF 300 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~--~~~~lYiG~~~--~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp 300 (407)
..++.+.+..+.+|++.+|+|..+..+.+...+.... +...+..|... .+... ....+...+. .. ......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPF-LD---KFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcch-hh---hHHhhc
Confidence 3455555556889999999999999998888873332 23345555432 11110 0010100011 00 111233
Q ss_pred CCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 015407 301 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 343 (407)
Q Consensus 301 ~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 343 (407)
.+..|++.++++++.+.+-.-...+ ...||..+..-+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g 180 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAG 180 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcC
Confidence 4456788899999998874322112 2457887766554444
No 26
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=88.52 E-value=9.7 Score=35.51 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCC-CCCeeEEeecc-CcccccCCCc--cccCcccccCCCCCCCCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS-KPRVYIGCMKS-GPVLNQKGVR--YHEPEYWKFGEAGNRYFR 301 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~-~~~lYiG~~~~-gpv~r~~~~K--w~~p~~w~fgd~~~~Yp~ 301 (407)
.++.+.+....+|++.+|+|+.+..+-|.+.+..... ...+..|.... .+........ |.....+..-......+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 3455555556799999999999998888887777642 22233333211 1100000000 000000000000011233
Q ss_pred CCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeecCCCc
Q 015407 302 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRL 352 (407)
Q Consensus 302 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~id~~~f 352 (407)
.+.|+++++.+++.. ..-.....||..++.-+...| +..+++...
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~ 226 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAVA 226 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccEE
Confidence 467777878887766 112223479999988886555 444444433
No 27
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=87.79 E-value=7.6 Score=33.47 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=65.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCC-eeecCCCccccchh
Q 015407 142 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELS 220 (407)
Q Consensus 142 I~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~D-IL~ld~~DsY~nLt 220 (407)
|.|.+-+...+||+.+++.-... ++.+.|+-|.....- ....+......+.. ....+..-+--.-.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~~--~~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKDL--SEEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEeccccccC--CHHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 34567788899999999855433 456667776653211 11111111110000 00001111111112
Q ss_pred HHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccCcccccCCCCCCCC
Q 015407 221 AKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYF 300 (407)
Q Consensus 221 ~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp 300 (407)
+-.+..++-+++ .+.++.+-..||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------- 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------
Confidence 333344444444 366899999999988876
Q ss_pred CCCCCCeeeecHHHHHHHHHhccc
Q 015407 301 RHATGQLYAISKDLAAYISINQHV 324 (407)
Q Consensus 301 ~y~~G~gYvLS~dla~~I~~~~~~ 324 (407)
+..+|++|+..|+++......
T Consensus 99 ---~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ---GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ---CceEEEeCHHHHHHHHHhCCC
Confidence 347899999999999986644
No 28
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=87.63 E-value=4.8 Score=35.64 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=72.9
Q ss_pred CcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015407 175 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 254 (407)
Q Consensus 175 ~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~ 254 (407)
..+.++.|-+.+.+ .....+.....++..+..++....+. | -.+++.+......+|++.+|+|.....+.|.
T Consensus 28 ~~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGSTD---RTLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 34566666655542 22233444444555565555443322 1 1344445555567999999999999988888
Q ss_pred HHHhhcCCCCCeeEEeecc--CcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHH
Q 015407 255 QTLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISI 320 (407)
Q Consensus 255 ~~L~~~~~~~~lYiG~~~~--gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~ 320 (407)
.+++.......+.+|.... .+....-..+.+......+ .....+...|+.+++++++++.+..
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 8887654445666665431 1110000001110000000 1133445678889999999998764
No 29
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.80 E-value=18 Score=30.61 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=55.6
Q ss_pred HHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCe-eEEeeccCcccccCCCccccCcccccCCCCCCCCCCCCCCee
Q 015407 230 AVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLY 308 (407)
Q Consensus 230 a~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~l-YiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gY 308 (407)
+.+..+.+|++..|||..+..+.+..++......+.+ .++.. +.|++.
T Consensus 69 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~ 117 (166)
T cd04186 69 GIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFL 117 (166)
T ss_pred HHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeE
Confidence 3344489999999999999998888887654322221 11111 568899
Q ss_pred eecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeec
Q 015407 309 AISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHID 348 (407)
Q Consensus 309 vLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id 348 (407)
++++++++.+-.-...... ..||..+..-+. |..+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 118 LVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred eeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEcc
Confidence 9999988876432222222 568998876664 44444433
No 30
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.51 E-value=11 Score=31.51 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCC--eeEEeecc---C-cccccC-CCccccCccccc-CCCC
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMKS---G-PVLNQK-GVRYHEPEYWKF-GEAG 296 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~--lYiG~~~~---g-pv~r~~-~~Kw~~p~~w~f-gd~~ 296 (407)
..++++.+..+.+|++.+|+|..+....|..++......+. +..|.... . ...... ..++........ +...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 44555555569999999999999998888877555433332 22233221 1 011000 001111100000 0001
Q ss_pred CCCCCCCCCCeeeecHHHHHHHH
Q 015407 297 NRYFRHATGQLYAISKDLAAYIS 319 (407)
Q Consensus 297 ~~Yp~y~~G~gYvLS~dla~~I~ 319 (407)
..+...+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988754
No 31
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.44 E-value=14 Score=32.95 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=61.9
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCC--CeeEEeecc--CcccccCCCccccCc----ccccCCCCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP--RVYIGCMKS--GPVLNQKGVRYHEPE----YWKFGEAGN 297 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~--~lYiG~~~~--gpv~r~~~~Kw~~p~----~w~fgd~~~ 297 (407)
+++.+....+.+|++..|+|.++.++.|...+......+ .++.|.+.. ..... ...+. .|. ...+..
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~--- 145 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFAR--- 145 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhc---
Confidence 345555556899999999999999998888887653333 344444321 10000 00000 111 001100
Q ss_pred CCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeecCC
Q 015407 298 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 350 (407)
Q Consensus 298 ~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id~~ 350 (407)
.--+ ..|+..++.+.+...+-.-. .....||..+...+. |..+.++++.
T Consensus 146 ~~~~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 146 RRSP-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred cCCC-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 0011 24566677777766542211 225799999988774 5555555443
No 32
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=83.43 E-value=32 Score=30.56 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=59.6
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcC--CCCCeeEEeecc---CcccccCCCccccCcccccCCCCCCCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMKS---GPVLNQKGVRYHEPEYWKFGEAGNRYF 300 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~--~~~~lYiG~~~~---gpv~r~~~~Kw~~p~~w~fgd~~~~Yp 300 (407)
+++++.+....+|++..|+|..+..+.|...++... ++..+..+.... ..... ..++.+. |.. ...+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WSP---DLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CCH---HHhhh
Confidence 455555556789999999999999998888887652 222333222110 00000 0111111 110 00111
Q ss_pred CCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCe
Q 015407 301 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 345 (407)
Q Consensus 301 ~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~ 345 (407)
.-+.|++-+++++++..+---.. .....||.-++.-+...|.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~--~~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFRE--GFEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCc--CcccchhHHHHHHHHhccce
Confidence 12345566789988887643221 12357999888777555443
No 33
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=83.21 E-value=3.7 Score=36.93 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=67.3
Q ss_pred eEEEeCCceEecHHHHHHHHhhcCCCCCeeEE--eeccCcccccCCCccccCcc-c---c--cCCCCCCCCCCCCCCeee
Q 015407 238 FYVKVDDDVHVNIATLGQTLVRHRSKPRVYIG--CMKSGPVLNQKGVRYHEPEY-W---K--FGEAGNRYFRHATGQLYA 309 (407)
Q Consensus 238 f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG--~~~~gpv~r~~~~Kw~~p~~-w---~--fgd~~~~Yp~y~~G~gYv 309 (407)
|++-+|+|+.+..+-|...+.... .+++-+. ..... .....-.++..-++ + . ........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999998888887665 3332222 12110 00000011111110 0 0 000112346678899999
Q ss_pred ecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeecCCCcccCCCC
Q 015407 310 ISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCCGTPP 358 (407)
Q Consensus 310 LS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id~~~f~~~~~~ 358 (407)
+++++++.+.--. -..+..||..++.=+. |..+..+++....+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999874222 1334579999987664 556777777755555443
No 34
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=82.82 E-value=65 Score=33.62 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=96.6
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCcccc
Q 015407 138 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 217 (407)
Q Consensus 138 ~~llI~V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~ 217 (407)
+.+-|+|.+.-.. ..|++|-.+-.+ . .-..+.+++|...+. +...+.+++..+++..+......+
T Consensus 75 p~vsViIP~yNE~----~~i~~~l~sll~----q-~yp~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~--- 139 (444)
T PRK14583 75 PLVSILVPCFNEG----LNARETIHAALA----Q-TYTNIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH--- 139 (444)
T ss_pred CcEEEEEEeCCCH----HHHHHHHHHHHc----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---
Confidence 4566666654332 234555433211 1 112466655554443 223344444445565554443222
Q ss_pred chhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCC---CccccCcccc-cC
Q 015407 218 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKG---VRYHEPEYWK-FG 293 (407)
Q Consensus 218 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~---~Kw~~p~~w~-fg 293 (407)
|.. |. .+++.+....+.+|++..|.|..+..+.|...+......+++ |.+...+..++.. .+....++.. ++
T Consensus 140 n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~ 215 (444)
T PRK14583 140 NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIG 215 (444)
T ss_pred CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHH
Confidence 222 32 355666666689999999999999999998888765333332 3332222221111 1111001000 00
Q ss_pred C--C-CCC--CCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeecCC
Q 015407 294 E--A-GNR--YFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDR 350 (407)
Q Consensus 294 d--~-~~~--Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~id~~ 350 (407)
. + ... -+..++|.+.++.+++++.+---. +....||.-+|.-+...| +...++.
T Consensus 216 ~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~~~i~ED~dl~~rl~~~G~~i~~~p~a 276 (444)
T PRK14583 216 LIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---PDMITEDIDISWKLQLKHWSVFFEPRG 276 (444)
T ss_pred HHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---CCcccccHHHHHHHHHcCCeEEEeecc
Confidence 0 0 000 112357888999999988763222 223479999998886544 4444443
No 35
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.70 E-value=35 Score=30.50 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCC--eeEEeeccCcccccCCCccccCcccccCCCCCCCCC
Q 015407 224 KIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFR 301 (407)
Q Consensus 224 ~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~--lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~ 301 (407)
-.++++|. ..+.+|++..|||..+..+-|..++.... .+. ++.|.. +.. .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~------------------~~~--~~----- 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLV------------------LDP--DG----- 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEeccee------------------EcC--CC-----
Confidence 34566665 56889999999999999887777666553 222 211111 000 01
Q ss_pred CCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeecCCCccc
Q 015407 302 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCC 354 (407)
Q Consensus 302 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id~~~f~~ 354 (407)
.+++.++.+++++.+--..... ....||+.++.-+. |..+ ...+..+.+
T Consensus 122 --~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h 172 (202)
T cd04185 122 --SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGI-YVPDAVVVH 172 (202)
T ss_pred --ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcE-EecceEEEE
Confidence 3456789999988764322222 23579999987775 4444 444444443
No 36
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.63 E-value=46 Score=30.57 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=63.6
Q ss_pred HHHHHHhc--CCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccC------cccc-cCCCC
Q 015407 226 YFATAVSL--WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP------EYWK-FGEAG 296 (407)
Q Consensus 226 ~~~wa~~~--~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p------~~w~-fgd~~ 296 (407)
++.++.+. .+.+|++..|+|+.+.++.|..++.... .+.+ |.+......++....++.. ..++ .+.+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666553 2479999999999999999999887664 3332 2221100011111111100 0000 00000
Q ss_pred -CC-CCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeecC
Q 015407 297 -NR-YFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHIDD 349 (407)
Q Consensus 297 -~~-Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~V~~id~ 349 (407)
.. -..++.|.+.++++++...+---. ..+..||+-++.=+... .+...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~---~~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWD---EWCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCC---CccccchHHHHHHHHHCCcEEEEcch
Confidence 00 012357888999999998874322 22358999998766544 4444443
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=79.73 E-value=38 Score=31.59 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=65.8
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCC-CCe-eEEe-eccCcccccCCCccccCcccc-cC-----CCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSK-PRV-YIGC-MKSGPVLNQKGVRYHEPEYWK-FG-----EAG 296 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~-~~l-YiG~-~~~gpv~r~~~~Kw~~p~~w~-fg-----d~~ 296 (407)
+++.+.+....+|++.+|+|+.+.++.|...+...... +.+ ++|. +...........+.+..+++. |+ -..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556665678999999999999999999888766422 332 2222 111000000000111000000 00 000
Q ss_pred CCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeecC
Q 015407 297 NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHIDD 349 (407)
Q Consensus 297 ~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~V~~id~ 349 (407)
...+..++|++.++++++++.+---.. ....||..++.=+... .+..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123334678889999999988743221 2347999998776544 4444443
No 38
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.24 E-value=12 Score=32.75 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=57.8
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccCcccccCCCCCCCCCCCCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATG 305 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G 305 (407)
.++.+.+....+|++..|+|..+..+-|...++...+ .....|... +.... . . .....|
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~~------~-~-~~~~~~ 128 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNEK------L-T-ERGIRG 128 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------ecccc------c-c-eeEecc
Confidence 3445555568899999999999998888888776632 222223211 00000 0 0 023457
Q ss_pred CeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 015407 306 QLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 343 (407)
Q Consensus 306 ~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 343 (407)
+.+++.+..+..+.--......+..||+-++.=+...|
T Consensus 129 ~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 129 CNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred ceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 77888888777543322333334589999887776555
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=78.19 E-value=50 Score=30.21 Aligned_cols=128 Identities=13% Similarity=0.009 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHH---hhcCCCCCe-eEEeeccCcccccCCCccccCccc---ccCC-CC
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTL---VRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYW---KFGE-AG 296 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L---~~~~~~~~l-YiG~~~~gpv~r~~~~Kw~~p~~w---~fgd-~~ 296 (407)
.+++.|... +++|++..|+|+.+.++.|..++ ......+.+ .+|+.............+.....+ .... ..
T Consensus 66 ~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (237)
T cd02526 66 IGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEG 144 (237)
T ss_pred HHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCC
Confidence 455554432 78999999999999998888885 333233332 223321000000000000000000 0000 00
Q ss_pred CCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeecCCCccc
Q 015407 297 NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLCC 354 (407)
Q Consensus 297 ~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~id~~~f~~ 354 (407)
..-..++.|++.++++++.+.+---...+ .+..||+.++.-+...| +..+++....+
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h 203 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKH 203 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEe
Confidence 11122345778889999888864322222 13578999887775444 54555444433
No 40
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=78.11 E-value=40 Score=35.18 Aligned_cols=129 Identities=10% Similarity=0.130 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCee--EEeeccCc-ccccCCCc--cccCc--------ccc
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY--IGCMKSGP-VLNQKGVR--YHEPE--------YWK 291 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lY--iG~~~~gp-v~r~~~~K--w~~p~--------~w~ 291 (407)
.+++++.+..+.+|++..|+|..+..+.|.+.+......+.+- .|.....+ ........ +.... .+.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 3556666667899999999999999999998887764334332 23332111 00000000 01100 000
Q ss_pred cCC---CCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHh---cCCCeeecCCCcccCC
Q 015407 292 FGE---AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI---GLDVEHIDDRRLCCGT 356 (407)
Q Consensus 292 fgd---~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~l~V~~id~~~f~~~~ 356 (407)
.+. .....+..++|++.++.++++..+---. ...-.||..++.=+. +-.+....+..++..+
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~ 268 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFYVDP 268 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEEEEC
Confidence 000 0001122357888888888877643211 223489999986442 3344445555555433
No 41
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=77.94 E-value=15 Score=32.10 Aligned_cols=136 Identities=9% Similarity=-0.022 Sum_probs=69.6
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 255 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~ 255 (407)
...++.+-..+. +.....+..-..++..+..+...+... .-.++..+.+....+|++..|+|..+.++.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555554443 223344444455565554444444332 113445555555669999999999999999888
Q ss_pred HHhh-cCCCCCeeEEeecc-CcccccC-CCccccCc-ccccCCCCCCCCCCCCCCeeeecHHHHHHHH
Q 015407 256 TLVR-HRSKPRVYIGCMKS-GPVLNQK-GVRYHEPE-YWKFGEAGNRYFRHATGQLYAISKDLAAYIS 319 (407)
Q Consensus 256 ~L~~-~~~~~~lYiG~~~~-gpv~r~~-~~Kw~~p~-~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~ 319 (407)
++.. ......+..|.... ......+ ..++.... .+.+..-...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 33344555565321 1000000 00000000 0000000111223356888899999999986
No 42
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=76.25 E-value=48 Score=33.26 Aligned_cols=135 Identities=8% Similarity=0.033 Sum_probs=69.7
Q ss_pred CcEEEEEEeecCCCCCCchHHHHHHHHhhcCC-eeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015407 175 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 253 (407)
Q Consensus 175 ~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~D-IL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L 253 (407)
..+.+++|-..|.+ +. ...+++-.+.+++ ++......++. |. .++..+.+..+.+|++.+|.|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~D--~T-~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSSD--NS-AEMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCCC--cH-HHHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 45788888776653 22 2223322333443 44333333332 11 12333344457899999999999999999
Q ss_pred HHHHhhcCCCCCeeEEeecc--CcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHH
Q 015407 254 GQTLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISI 320 (407)
Q Consensus 254 ~~~L~~~~~~~~lYiG~~~~--gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~ 320 (407)
..+++.......+..|.... .+..+.-.++.+.--...+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88887764333444443321 2222222222211100011 12344443333 35899999999854
No 43
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=75.83 E-value=66 Score=29.61 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=61.7
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCcccc-----Cccccc-----CCC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE-----PEYWKF-----GEA 295 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~-----p~~w~f-----gd~ 295 (407)
.++.+.+..+.+|++.+|.|+.+.++.|...+... ..+. +|++.......++...|.. +..+.+ +..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 34555565689999999999999999988855433 2333 2332211111111111110 000000 000
Q ss_pred CCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeecCCCc
Q 015407 296 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRL 352 (407)
Q Consensus 296 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~id~~~f 352 (407)
.......+.|++-++.+++...+---. .....||+.++.-+...| +..+++...
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~~~v 210 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDDVVV 210 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEecccee
Confidence 011111235666678888877763211 123579999987775444 555554443
No 44
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=75.68 E-value=4.4 Score=39.69 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCCeeeecHHHHHHHHHhcc-cc---CCCCCchHHHHHHHhcCCCeeecCCCcccC
Q 015407 304 TGQLYAISKDLAAYISINQH-VL---HKYANEDVSLGSWFIGLDVEHIDDRRLCCG 355 (407)
Q Consensus 304 ~G~gYvLS~dla~~I~~~~~-~l---~~~~~EDV~vG~~l~~l~V~~id~~~f~~~ 355 (407)
+|+|++||..||+.|..... .+ +.+.--|--+..|+..++|....+++|+..
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~ 67 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQM 67 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeE
Confidence 89999999999999998532 22 333457999999998888776666666653
No 45
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=72.62 E-value=62 Score=29.23 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=50.5
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHhh-cCCCCCeeEEee-ccCcccccCCCcc--ccC--cccccCCCCCCCC
Q 015407 227 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVR-HRSKPRVYIGCM-KSGPVLNQKGVRY--HEP--EYWKFGEAGNRYF 300 (407)
Q Consensus 227 ~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~-~~~~~~lYiG~~-~~gpv~r~~~~Kw--~~p--~~w~fgd~~~~Yp 300 (407)
++.+.+....+|++.+|+|..+.++.|..++.. ..+...+..|.. ...... .....+ +.+ ..+........-.
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKV 148 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 333333345699999999999999988888876 344455555542 211111 000000 000 0000000001123
Q ss_pred CCCCCCeeeecHHHHHHHH
Q 015407 301 RHATGQLYAISKDLAAYIS 319 (407)
Q Consensus 301 ~y~~G~gYvLS~dla~~I~ 319 (407)
++++|++.++++++++.+.
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 4577888899999999987
No 46
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.00 E-value=81 Score=32.02 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=93.2
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHH
Q 015407 177 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 256 (407)
Q Consensus 177 v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~ 256 (407)
+.+..|...+. +..-+.+.+-..++++.+.+...+ .+...| ..++.++....+.++++..|-|+.+..+.|.+.
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~~--~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYPE--KKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEecc--ccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 56666665332 234444555556665444444220 111222 346667776667999999999999999999999
Q ss_pred HhhcCCCCCe-eEEeec--cCcccccCCCccccCcc-------cccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccC
Q 015407 257 LVRHRSKPRV-YIGCMK--SGPVLNQKGVRYHEPEY-------WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 326 (407)
Q Consensus 257 L~~~~~~~~l-YiG~~~--~gpv~r~~~~Kw~~p~~-------w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~ 326 (407)
+......+.. +.|... .++.......+-..-++ +... ........+.|...++.+++++.+- ....
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~ 234 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA-SKGGLISFLSGSSSAFRRSALEEVG---GWLE 234 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhC---CCCC
Confidence 9887544333 333321 10000000000000000 0000 1123567789999999999999876 2234
Q ss_pred CCCCchHHHHHHHhc--CCCeeecCC
Q 015407 327 KYANEDVSLGSWFIG--LDVEHIDDR 350 (407)
Q Consensus 327 ~~~~EDV~vG~~l~~--l~V~~id~~ 350 (407)
..--||..++..+.. ..+..+++.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc
Confidence 445799999999864 445566554
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.61 E-value=43 Score=30.19 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=58.3
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeec----c-CcccccCCCccccCcccccCCCCCCCCC
Q 015407 227 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMK----S-GPVLNQKGVRYHEPEYWKFGEAGNRYFR 301 (407)
Q Consensus 227 ~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~----~-gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~ 301 (407)
++.+......+|++.+|+|..+..+.|..++...... ...+|... . +...+....++.... .....+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 135 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLRS-------RLFGLP 135 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhccccee-------cccCCC
Confidence 3444444568999999999999988888876655433 33344321 1 111000000111111 001112
Q ss_pred CCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCCCe
Q 015407 302 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 345 (407)
Q Consensus 302 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~V~ 345 (407)
.++.+.++++++...+-.-... +..||.-++.=+...|-.
T Consensus 136 -~~~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 136 -YGDQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred -cCCceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCE
Confidence 2456788999988776433222 278999887666555533
No 48
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=66.38 E-value=41 Score=33.05 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=73.2
Q ss_pred cCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCee-EEee-cc--Ccc---
Q 015407 204 HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-IGCM-KS--GPV--- 276 (407)
Q Consensus 204 ~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lY-iG~~-~~--gpv--- 276 (407)
+.++..+...++.- ...=.-..++.|....+ +|++-.++|+.+..+-|.++|+.....+... .|.. .. ++.
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~-~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGD-DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCC-cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67777765544322 01101145555554322 2999999999999999999998776544333 3332 11 110
Q ss_pred cccC-----CCcc-ccCcccccCC--CCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC
Q 015407 277 LNQK-----GVRY-HEPEYWKFGE--AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 343 (407)
Q Consensus 277 ~r~~-----~~Kw-~~p~~w~fgd--~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~ 343 (407)
.+.. ...| +.+..-.-.+ +...+..+++|++.++++++.+.+---.. --....||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 0000 0111 1111000000 01112225789999999999999866222 1223799999987665444
No 49
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=65.07 E-value=26 Score=35.71 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCcceEEEeCCceEecHH---HHHHHHhhcCCCCCeeEEeeccCcccccCCCccc---cCcccccCCCCC
Q 015407 224 KIYFATAVSLWDADFYVKVDDDVHVNIA---TLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYH---EPEYWKFGEAGN 297 (407)
Q Consensus 224 ~~~~~wa~~~~~a~f~lKvDDDvfVni~---~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~---~p~~w~fgd~~~ 297 (407)
+.++.|+.+..++++++.+|||..+.++ -+.+.|......++++ |+.+- .+.+.+.. .|+..|+.
T Consensus 86 k~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~---NdnG~~~~~~~~~~~lyrs---- 156 (334)
T cd02514 86 KWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAW---NDNGKEHFVDDTPSLLYRT---- 156 (334)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEee---ccCCcccccCCCcceEEEe----
Confidence 3467777665689999999999999998 4466666665556654 33210 01111111 13333322
Q ss_pred CCCCCCCCCeeeecHHHHHHH
Q 015407 298 RYFRHATGQLYAISKDLAAYI 318 (407)
Q Consensus 298 ~Yp~y~~G~gYvLS~dla~~I 318 (407)
.|+.|.|.++.+++-+.+
T Consensus 157 ---~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 ---DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ---cCCCchHHHHHHHHHHHh
Confidence 356789999999998887
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=64.36 E-value=1.1e+02 Score=34.33 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCe-eEEeec---c-CcccccCCCccccCcc--ccc
Q 015407 220 SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMK---S-GPVLNQKGVRYHEPEY--WKF 292 (407)
Q Consensus 220 t~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~l-YiG~~~---~-gpv~r~~~~Kw~~p~~--w~f 292 (407)
..|.- .++.+.+..+.+|++..|.|+.+..+-|...+......+++ .+++.. + .+..++-......|.+ .++
T Consensus 214 ~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~ 292 (713)
T TIGR03030 214 HAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFY 292 (713)
T ss_pred CCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHH
Confidence 34533 35666666789999999999999999988888665334443 222111 1 1111110000001100 000
Q ss_pred CC--CCC--CCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcCC--CeeecCCCcccCCC
Q 015407 293 GE--AGN--RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLCCGTP 357 (407)
Q Consensus 293 gd--~~~--~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l~--V~~id~~~f~~~~~ 357 (407)
+. ++. .-..++.|.+.++.++++..+---. .....||..++.-+...| +...++.......|
T Consensus 293 ~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p 360 (713)
T TIGR03030 293 GLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP 360 (713)
T ss_pred HHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 00 000 0123567899999999998763211 122479999999886554 45566665554444
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=62.92 E-value=1.5e+02 Score=28.72 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=88.4
Q ss_pred CCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCe-e-ecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHH
Q 015407 174 EKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-M-RLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 251 (407)
Q Consensus 174 ~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DI-L-~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~ 251 (407)
...+.+++|-+.+.. .....|.+-.+.++-+ + ..+.....-+.+ .+.+-+.+....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 456777777665532 3345566666666655 2 222222122222 234445555699999999999999999
Q ss_pred HHHHHHh---hcCCCC-CeeEE-eeccCc-----ccccCCCcccc--CcccccCCCCCCCC-CCCCCCeeeecHHHHHHH
Q 015407 252 TLGQTLV---RHRSKP-RVYIG-CMKSGP-----VLNQKGVRYHE--PEYWKFGEAGNRYF-RHATGQLYAISKDLAAYI 318 (407)
Q Consensus 252 ~L~~~L~---~~~~~~-~lYiG-~~~~gp-----v~r~~~~Kw~~--p~~w~fgd~~~~Yp-~y~~G~gYvLS~dla~~I 318 (407)
.|...+. .....+ .++++ +..-.. ........|.. -+... ....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999988 333222 33332 221110 10000001100 00000 00011111 223569999999998887
Q ss_pred HHhccccCCCCCchHHHHHHHhcCCCe
Q 015407 319 SINQHVLHKYANEDVSLGSWFIGLDVE 345 (407)
Q Consensus 319 ~~~~~~l~~~~~EDV~vG~~l~~l~V~ 345 (407)
----.....+..||.-++.=|...+..
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCc
Confidence 655555666789999998767655544
No 52
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=62.86 E-value=1.4e+02 Score=28.94 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHhc-CCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCC---cc-------cc
Q 015407 218 ELSAKTKIYFATAVSL-WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---RY-------HE 286 (407)
Q Consensus 218 nLt~Kt~~~~~wa~~~-~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~---Kw-------~~ 286 (407)
|.-.|+-..-...... .+.+|++-.|.|+.+.++-|..++......+++ |-+.......+..+ ++ +.
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~v--g~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRA--GIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCE--EEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 3344544433333222 478999999999999999999998776433442 33221000111111 10 00
Q ss_pred C------cccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhcc-----cc-CCCCCchHHHHHHHhcCCC
Q 015407 287 P------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH-----VL-HKYANEDVSLGSWFIGLDV 344 (407)
Q Consensus 287 p------~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~-----~l-~~~~~EDV~vG~~l~~l~V 344 (407)
| ..|. ..-.+|.|...++.++++..+..... -. ...-.||..+|..+...|-
T Consensus 155 ~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ 218 (254)
T cd04191 155 PVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGW 218 (254)
T ss_pred HHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCC
Confidence 0 0121 11235679999999998877543211 11 2245899999998865553
No 53
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=61.35 E-value=61 Score=29.59 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=78.3
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 255 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~ 255 (407)
...+++|...+. +.....+ .+...+..+.... .+. .-|.. .+..+....+.+|++.+|+|+.+..+.|..
T Consensus 28 ~~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 345666665443 2222333 3345566655553 221 12332 334444445899999999999999999988
Q ss_pred HHhhcCCCCCeeEEeeccCcccccC-CCccc------cC-------cccccCCCCCCCCCCCCCCeeeecHHHHHHHHHh
Q 015407 256 TLVRHRSKPRVYIGCMKSGPVLNQK-GVRYH------EP-------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 321 (407)
Q Consensus 256 ~L~~~~~~~~lYiG~~~~gpv~r~~-~~Kw~------~p-------~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~ 321 (407)
.+.... .+.+ |.+......... ...|. .. ..... . .-...++|+..++.+++++.+.-.
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~G~~~~~rr~~l~~~~~~ 170 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY---D-GGVPCLSGRTAAYRTEILKDFLFL 170 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh---C-CCEEEccCcHHHHHHHHHhhhhhH
Confidence 887775 3432 222110000000 01110 00 00000 0 011235677888888888765432
Q ss_pred ccc-------cCCCCCchHHHHHHHhcCCCe
Q 015407 322 QHV-------LHKYANEDVSLGSWFIGLDVE 345 (407)
Q Consensus 322 ~~~-------l~~~~~EDV~vG~~l~~l~V~ 345 (407)
... .+....||..++.-+...|.+
T Consensus 171 ~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 171 EEFTNETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred HHhhhhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 111 234568999998877655443
No 54
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=60.68 E-value=1.5e+02 Score=27.75 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=78.7
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcCC--eeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 253 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~D--IL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L 253 (407)
.+.+++|-..|++ .....+.+-.++|++ +.......+. ... .+++.+....+.+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 5677777765542 223333333344543 2222222211 111 24444444457899999999999999988
Q ss_pred HHHHhhcCC-CCCeeEEeec--cCcccccCCCccc---cCc------ccccCCCCCCCCCCCCCCeeeecHHHHHHHHHh
Q 015407 254 GQTLVRHRS-KPRVYIGCMK--SGPVLNQKGVRYH---EPE------YWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 321 (407)
Q Consensus 254 ~~~L~~~~~-~~~lYiG~~~--~gpv~r~~~~Kw~---~p~------~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~ 321 (407)
..++..... ...+..|... .+.. .+..|. .+. .+.+ +. .-....|++.++++++++.+...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~---~~-~~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLL---WP-GVSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHh---CC-CCCcCCCcccceeHHHHHHHHhh
Confidence 888865532 3455556421 1100 000110 000 0111 11 11235788889999999998643
Q ss_pred ccccCCCCCchHHHHHHH--hcCCCeeec
Q 015407 322 QHVLHKYANEDVSLGSWF--IGLDVEHID 348 (407)
Q Consensus 322 ~~~l~~~~~EDV~vG~~l--~~l~V~~id 348 (407)
... ..| ..|+-+...+ .|..+..++
T Consensus 185 ~~~-~~~-~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 185 VVS-KGY-VFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred ccC-CCc-EEehHHHHHHHHcCCcEEEeC
Confidence 322 122 2345454444 455555443
No 55
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=58.54 E-value=17 Score=34.47 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=61.8
Q ss_pred cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCe--eEEeecc-Cc---cc-ccCCCccccCcc-cccCCCCCCCCCCCC
Q 015407 233 LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV--YIGCMKS-GP---VL-NQKGVRYHEPEY-WKFGEAGNRYFRHAT 304 (407)
Q Consensus 233 ~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~l--YiG~~~~-gp---v~-r~~~~Kw~~p~~-w~fgd~~~~Yp~y~~ 304 (407)
..+.+|++.+|.|+.+..+.|..++......+++ ..|.+.. ++ .+ +-...-|..... .......-.+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 3589999999999999999988888766434443 2233211 10 00 000000000000 000001113455678
Q ss_pred CCeeeecHHHHHHHHHhcc----------cc-------CCCCCchHHHHHHHhcC--CCee
Q 015407 305 GQLYAISKDLAAYISINQH----------VL-------HKYANEDVSLGSWFIGL--DVEH 346 (407)
Q Consensus 305 G~gYvLS~dla~~I~~~~~----------~l-------~~~~~EDV~vG~~l~~l--~V~~ 346 (407)
|+++++.+++++.+..... .+ .....||..++..+... .+..
T Consensus 151 G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 151 GCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred CceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 9999999998877532211 00 12357999998888544 4555
No 56
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=51.11 E-value=62 Score=31.00 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=27.5
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcC
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR 261 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~ 261 (407)
++++|.+ .+++|++..|||+.+..+.|..+++...
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 5566654 3789999999999999888887776553
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=50.28 E-value=1.6e+02 Score=26.45 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=51.5
Q ss_pred CcEEEEEEeecCCCCCCchHHHHHHHHhhcCCe-eecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHH
Q 015407 175 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-MRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 253 (407)
Q Consensus 175 ~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DI-L~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L 253 (407)
..+.++.|-+.|.+ .....+++..++++.. ..+....+. ... .++..+.+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 35677777666542 2334444444556554 223222221 111 23333444446799999999999999999
Q ss_pred HHHHhh-cCCCCCeeEEe
Q 015407 254 GQTLVR-HRSKPRVYIGC 270 (407)
Q Consensus 254 ~~~L~~-~~~~~~lYiG~ 270 (407)
..++.. ......+.+|.
T Consensus 101 ~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 101 EKLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHHHHHHhccCCcEEEEE
Confidence 988876 33344566675
No 58
>PHA01631 hypothetical protein
Probab=49.65 E-value=44 Score=30.85 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred cCCeeecCCCccccchhHHHHHHHHHHHh---cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccC
Q 015407 204 HGDFMRLDHVEGYLELSAKTKIYFATAVS---LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQK 280 (407)
Q Consensus 204 ~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~---~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~ 280 (407)
+.+|+...--..++.+. ....+..+.+ .-+-|.++.+|.|++|+.-. .. .+++.++.=|... +
T Consensus 39 ~~~Ii~~~t~~e~Rr~R--IAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiPA---~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWLR--IAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYWL---Y--- 104 (176)
T ss_pred CCceEEecccchhHHHH--HHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeeee---e---
Confidence 55666665322233332 2223333433 35778888999999998532 11 2333444444321 1
Q ss_pred CCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHh
Q 015407 281 GVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 321 (407)
Q Consensus 281 ~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~ 321 (407)
.| |.+.+-+||.|.-|++.+..+..+...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 11 233566899999999999999988653
No 59
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=48.66 E-value=73 Score=31.88 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=60.3
Q ss_pred ccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCc--cccchhHHHHHHHHHHHhcCCcceEEEeCCceEec
Q 015407 172 EEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVE--GYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVN 249 (407)
Q Consensus 172 ~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~D--sY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVn 249 (407)
....++.++|+-|.+ ..++.|..=.....-++.+|+.+ .+..-+.-...+..|+++.++.++++..|-|+|..
T Consensus 34 ts~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S 108 (346)
T COG4092 34 TSSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGS 108 (346)
T ss_pred cccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEecccccc
Confidence 345677788887764 35666766666677777777543 44433444556778888878999999999999999
Q ss_pred HHHHHHHHh
Q 015407 250 IATLGQTLV 258 (407)
Q Consensus 250 i~~L~~~L~ 258 (407)
.++..++|.
T Consensus 109 ~dnF~k~l~ 117 (346)
T COG4092 109 SDNFAKMLS 117 (346)
T ss_pred HHHHHHHHH
Confidence 999999883
No 60
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=46.44 E-value=18 Score=37.51 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.6
Q ss_pred CcceEEEeCCceEecHHHHHHHHhhcC
Q 015407 235 DADFYVKVDDDVHVNIATLGQTLVRHR 261 (407)
Q Consensus 235 ~a~f~lKvDDDvfVni~~L~~~L~~~~ 261 (407)
.+||++..|||+++.++.+..+-....
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~ 196 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMM 196 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhh
Confidence 567999999999999999999887654
No 61
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=46.17 E-value=1.5e+02 Score=23.69 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=25.7
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhh
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVR 259 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~ 259 (407)
.+..+....+.+|++.+|+|..+.++.+...+..
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 3444544458999999999999999888876443
No 62
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=43.69 E-value=3.5e+02 Score=28.78 Aligned_cols=84 Identities=12% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHH----hcCCcceEEEeCCceEecHHHHHHHHhhc---CCCCCeeEEeeccCcccccCCCccc----cCcccccCC
Q 015407 226 YFATAV----SLWDADFYVKVDDDVHVNIATLGQTLVRH---RSKPRVYIGCMKSGPVLNQKGVRYH----EPEYWKFGE 294 (407)
Q Consensus 226 ~~~wa~----~~~~a~f~lKvDDDvfVni~~L~~~L~~~---~~~~~lYiG~~~~gpv~r~~~~Kw~----~p~~w~fgd 294 (407)
=++||. ...+++.++-+.||.-+-++=+.-+.... ...+.+| |+.+ ..+.+.... .|+..|..|
T Consensus 178 HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~--ciSa---wNdnG~~~~~~~~~~~~lyRsd 252 (434)
T PF03071_consen 178 HYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLW--CISA---WNDNGKEHFVDDSRPSLLYRSD 252 (434)
T ss_dssp HHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEE--EEES-----TT-BGGGS-TT-TT-EEEES
T ss_pred HHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeE--EEEc---cccCCccccccCCCccceEecc
Confidence 344554 34578999999999999887655444332 1245665 4321 001111111 133333221
Q ss_pred CCCCCCCCCCCCeeeecHHHHHHHHHh
Q 015407 295 AGNRYFRHATGQLYAISKDLAAYISIN 321 (407)
Q Consensus 295 ~~~~Yp~y~~G~gYvLS~dla~~I~~~ 321 (407)
|..|-|++|++++-..+...
T Consensus 253 -------ffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 253 -------FFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp -------S---SSEEEEHHHHHHHGGG
T ss_pred -------cCCchHHHhhHHHHHhhccc
Confidence 34589999999999876543
No 63
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=43.00 E-value=30 Score=21.55 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=15.4
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 015407 93 IQTLDKTISNLEMELAAAR 111 (407)
Q Consensus 93 ~~~~~~~i~~le~~l~~~~ 111 (407)
+..+..+|++||.+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567888999999998765
No 64
>PRK10018 putative glycosyl transferase; Provisional
Probab=38.89 E-value=3.9e+02 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhc
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH 260 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~ 260 (407)
+.+.+.+....+|++..|+|..+.++.|..++...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34445555689999999999999998888777654
No 65
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=37.33 E-value=3.1e+02 Score=24.73 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=31.6
Q ss_pred HHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEe
Q 015407 227 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC 270 (407)
Q Consensus 227 ~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~ 270 (407)
...+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34455556889999999999999988877665554334445565
No 66
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=34.92 E-value=3.2e+02 Score=24.03 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=51.0
Q ss_pred HHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccC----cc----cc--cC
Q 015407 225 IYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EY----WK--FG 293 (407)
Q Consensus 225 ~~~~wa~~-~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p----~~----w~--fg 293 (407)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|+.... ++...|.-. .+ +. .+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444431 246899999999999999888888877654455556654211 111112100 00 00 00
Q ss_pred CCCCCCCCCCCCCeeeecHHHHHH
Q 015407 294 EAGNRYFRHATGQLYAISKDLAAY 317 (407)
Q Consensus 294 d~~~~Yp~y~~G~gYvLS~dla~~ 317 (407)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122335689999999999988
No 67
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=34.63 E-value=5e+02 Score=29.28 Aligned_cols=199 Identities=14% Similarity=0.057 Sum_probs=101.5
Q ss_pred CCCeeEEEEEECCCCCHH-HHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCch--HHHHHHHHhhcC---Cee
Q 015407 135 KRRYLMVVGINTAFSSRK-RRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGIL--DRAIEAEDRKHG---DFM 208 (407)
Q Consensus 135 ~~~~~llI~V~Sa~~~~~-rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~--~~~L~~E~~~~~---DIL 208 (407)
...+.+.|+|.+.-...+ -+..|+.+..+-.. ......+.+ |++..+.+++-.. ..++.+=.++|+ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 445667777777554443 34678888865421 111224454 8887654322111 011111133343 333
Q ss_pred ecCCCccccchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCC---cc
Q 015407 209 RLDHVEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---RY 284 (407)
Q Consensus 209 ~ld~~DsY~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~---Kw 284 (407)
...-. .|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+++......|+ +|-+...+...+..+ ++
T Consensus 196 yr~R~---~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~ 270 (691)
T PRK05454 196 YRRRR---RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARL 270 (691)
T ss_pred EEECC---cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHH
Confidence 32222 2333455544444332 246799999999999999999999976543444 244432222111111 00
Q ss_pred -------ccC------cccccCCCCCCCCCCCCCCeeeecHHHHHHHHHh------ccccCCCCCchHHHHHHHhc--CC
Q 015407 285 -------HEP------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN------QHVLHKYANEDVSLGSWFIG--LD 343 (407)
Q Consensus 285 -------~~p------~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~------~~~l~~~~~EDV~vG~~l~~--l~ 343 (407)
|-+ ..|..+ .+ ...|...++.++....+..- ...-...--||...|..+.. -.
T Consensus 271 qqf~~~~y~~~~~~G~~~w~~~-~g-----~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gyr 344 (691)
T PRK05454 271 QQFATRVYGPLFAAGLAWWQGG-EG-----NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWG 344 (691)
T ss_pred HHHHHHHHHHHHHhhhhhhccC-cc-----ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCE
Confidence 000 012211 01 12477778888877665311 11112345789999999864 45
Q ss_pred CeeecC
Q 015407 344 VEHIDD 349 (407)
Q Consensus 344 V~~id~ 349 (407)
|..+++
T Consensus 345 V~~~pd 350 (691)
T PRK05454 345 VWLAPD 350 (691)
T ss_pred EEEcCc
Confidence 666666
No 68
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=29.94 E-value=7.4e+02 Score=26.77 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=59.2
Q ss_pred CcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEe-eccCcccccCCCcc----ccCcccc-cC-C-C---CCCCCCCC
Q 015407 235 DADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC-MKSGPVLNQKGVRY----HEPEYWK-FG-E-A---GNRYFRHA 303 (407)
Q Consensus 235 ~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~-~~~gpv~r~~~~Kw----~~p~~w~-fg-d-~---~~~Yp~y~ 303 (407)
++++++..|-|..+.++.|..+- ...+...+ +.. +...+ .+...| |.-+... +. + + .-.-+-.+
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~-VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~ 232 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYN-YLLPRHDF-VQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPS 232 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHH-hhcCCCCE-EecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 46999999999999999987543 33233321 111 11100 111111 1000000 00 0 0 00122336
Q ss_pred CCCeeeecHHHHHHHHHhc---cccCCCCCchHHHHHHHhcCC--CeeecC
Q 015407 304 TGQLYAISKDLAAYISINQ---HVLHKYANEDVSLGSWFIGLD--VEHIDD 349 (407)
Q Consensus 304 ~G~gYvLS~dla~~I~~~~---~~l~~~~~EDV~vG~~l~~l~--V~~id~ 349 (407)
.|.++++++++++.+.... ..-...--||.-+|.-+...| +...++
T Consensus 233 ~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ 283 (504)
T PRK14716 233 AGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRV 283 (504)
T ss_pred CCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 8999999999999985422 122335689999998886544 444443
No 69
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=28.32 E-value=4.7e+02 Score=26.02 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=52.9
Q ss_pred CCcEEEEEEeecCCCCCCchHHHHHHHH----------hhcCCeeec--CCCcc-------cc-----chhHHHHHHH-H
Q 015407 174 EKGIIMRFVIGHSATSGGILDRAIEAED----------RKHGDFMRL--DHVEG-------YL-----ELSAKTKIYF-A 228 (407)
Q Consensus 174 ~~~v~v~FvvG~s~~~~~~~~~~L~~E~----------~~~~DIL~l--d~~Ds-------Y~-----nLt~Kt~~~~-~ 228 (407)
...|.+-|+++.+.. ++.....|+++. ..|+.|.++ ||.+. .+ ..-.+.++-. +
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 456889999998863 233334444333 345555444 45432 11 1122222211 1
Q ss_pred HHHh---cCCcceEEEeCCceEecHHHHHHHHhhcC
Q 015407 229 TAVS---LWDADFYVKVDDDVHVNIATLGQTLVRHR 261 (407)
Q Consensus 229 wa~~---~~~a~f~lKvDDDvfVni~~L~~~L~~~~ 261 (407)
|+.. .+..+|++-.|-|+.-.++.|++.|-.++
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 3221 35899999999999999999999998875
No 70
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=24.00 E-value=84 Score=20.68 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHhHHHhccc
Q 015407 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (407)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (407)
++--|+.++.+|+|-..+.|-||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999999887
No 71
>PLN03181 glycosyltransferase; Provisional
Probab=23.59 E-value=5.5e+02 Score=27.37 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCC----C-CC-chHHHHHHH---HhhcCCeee-cC-CCc-cccchhH
Q 015407 154 RDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSAT----S-GG-ILDRAIEAE---DRKHGDFMR-LD-HVE-GYLELSA 221 (407)
Q Consensus 154 R~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~----~-~~-~~~~~L~~E---~~~~~DIL~-ld-~~D-sY~nLt~ 221 (407)
=++-|+.|.+... ....+.+=+|+.|.|..+. + ++ .+.+.+++- +++||=-+. .+ ..+ .+..-..
T Consensus 108 wD~kR~~Wl~~~p---~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHP---SFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 4566778887532 1222344467777776522 1 22 233333321 456663333 22 223 5666777
Q ss_pred HHHHHHHHHHhcCCcceEEEeCCceEe
Q 015407 222 KTKIYFATAVSLWDADFYVKVDDDVHV 248 (407)
Q Consensus 222 Kt~~~~~wa~~~~~a~f~lKvDDDvfV 248 (407)
|..+.-.-+.+.++++|+.-+|.|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 877776666678999999999999887
No 72
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=23.15 E-value=4.1e+02 Score=28.18 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCC-----CC-chHHHHHHH---HhhcCCeeecCC---CccccchhH
Q 015407 154 RDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATS-----GG-ILDRAIEAE---DRKHGDFMRLDH---VEGYLELSA 221 (407)
Q Consensus 154 R~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~-----~~-~~~~~L~~E---~~~~~DIL~ld~---~DsY~nLt~ 221 (407)
=++-|+.|........... ...-+++.|.|..+.+ ++ .+.+.+++- ++.||=-+..+. .+.......
T Consensus 105 wd~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~Wa 183 (429)
T PLN03182 105 WDEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWA 183 (429)
T ss_pred HHHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchh
Confidence 3555777877532111111 1334777888776542 11 233333331 456664444442 223455677
Q ss_pred HHHHHHHHHHhcCCcceEEEeCCceEe
Q 015407 222 KTKIYFATAVSLWDADFYVKVDDDVHV 248 (407)
Q Consensus 222 Kt~~~~~wa~~~~~a~f~lKvDDDvfV 248 (407)
|.-+..+.+.+.++++|+.=+|.|+++
T Consensus 184 KlpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 184 KLPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 888887777788999999999999887
No 73
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=22.75 E-value=80 Score=24.27 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHhcc
Q 015407 20 TFLLCLGCFCAGMLFTN 36 (407)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (407)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45889999999988763
No 74
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=21.72 E-value=3.5e+02 Score=21.26 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=38.6
Q ss_pred CCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHh-cCCcceEEEeCCceEecHHH
Q 015407 174 EKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIAT 252 (407)
Q Consensus 174 ~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDvfVni~~ 252 (407)
..|+..++|+-..++ +.....| . .+.++-...+...|..-... ....+.+.+ ..+++|++.+|-|=|+.++.
T Consensus 16 ~lG~d~i~i~d~~s~--D~t~~~l-~---~~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 16 ALGVDHIYIYDDGST--DGTREIL-R---ALPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred HcCCCEEEEEECCCC--ccHHHHH-H---hCCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 345665555543322 1222222 2 23455555555556433333 223333333 35899999999999987754
No 75
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=20.47 E-value=6.1e+02 Score=25.47 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=17.1
Q ss_pred CcceEEEeCCceEecHHHHHHH
Q 015407 235 DADFYVKVDDDVHVNIATLGQT 256 (407)
Q Consensus 235 ~a~f~lKvDDDvfVni~~L~~~ 256 (407)
.++||+-..||+.....=+...
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i 190 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRI 190 (297)
T ss_pred cCCeEEEecCCeEechhHHHHH
Confidence 6789999999999887644433
Done!